Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1129900 | XP_003626470.1 | 97.297 | 222 | 6 | 0 | 1 | 222 | 5 | 226 | 8.83e-159 | 448 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1129900 | sp|Q8VYF7|WHY2_ARATH | 57.983 | 238 | 84 | 4 | 1 | 222 | 1 | 238 | 7.23e-90 | 267 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1129900 | G7L2W4 | 97.297 | 222 | 6 | 0 | 1 | 222 | 5 | 226 | 4.22e-159 | 448 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1129900 | TF | Whirly |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0184090 | Msa1129900 | 0.975179 | 1.764049e-139 | -8.615850e-47 |
| Msa1129900 | Msa1430210 | 0.974053 | 1.753970e-137 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1129900 | MtrunA17_Chr7g0274781 | 97.297 | 222 | 6 | 0 | 1 | 222 | 5 | 226 | 8.12e-163 | 448 |
| Msa1129900 | MtrunA17_Chr5g0416091 | 39.894 | 188 | 109 | 2 | 37 | 222 | 76 | 261 | 2.73e-47 | 156 |
| Msa1129900 | MtrunA17_Chr8g0362331 | 40.244 | 164 | 96 | 1 | 37 | 198 | 75 | 238 | 4.12e-47 | 156 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1129900 | AT1G71260.1 | 57.983 | 238 | 84 | 4 | 1 | 222 | 1 | 238 | 7.35e-91 | 267 |
| Msa1129900 | AT2G02740.1 | 42.408 | 191 | 100 | 4 | 39 | 222 | 81 | 268 | 1.11e-51 | 168 |
| Msa1129900 | AT1G14410.1 | 40.838 | 191 | 96 | 3 | 42 | 222 | 80 | 263 | 1.72e-51 | 167 |
Find 71 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTGCGTTGCCACACATTA+TGG | 0.228816 | 7_3:+81913589 | Msa1129900:intron |
| TGGATTGATAATACACAAAA+TGG | 0.253128 | 7_3:-81913754 | None:intergenic |
| CCACATACCATCCTAGTCTT+TGG | 0.268936 | 7_3:-81913774 | None:intergenic |
| GCTTGCTTCCTTCATCTTCC+AGG | 0.275752 | 7_3:+81910722 | Msa1129900:CDS |
| TTGCCCTTGTAAACAGAATA+AGG | 0.288907 | 7_3:-81911011 | None:intergenic |
| AAAATTTGTGAGTTCATCTT+TGG | 0.301520 | 7_3:-81913662 | None:intergenic |
| TTGAGATTTGAGATATTCAT+AGG | 0.312010 | 7_3:+81913964 | Msa1129900:three_prime_UTR |
| AGGAACACTAAAATTCTCTT+TGG | 0.325050 | 7_3:-81912664 | None:intergenic |
| ATGAGTTTCATGCCTGCTAT+TGG | 0.341936 | 7_3:+81911387 | Msa1129900:CDS |
| GAAAGAATTCACATGAATCT+TGG | 0.354145 | 7_3:-81912240 | None:intergenic |
| AAAGAATTCACATGAATCTT+GGG | 0.363397 | 7_3:-81912239 | None:intergenic |
| AAATATTATAGAATTTCATT+TGG | 0.366650 | 7_3:-81913999 | None:intergenic |
| TGAGTTTCATGCCTGCTATT+GGG | 0.372914 | 7_3:+81911388 | Msa1129900:CDS |
| GCAAACTCAGCAGTTGTAAC+AGG | 0.373789 | 7_3:-81912684 | None:intergenic |
| AGGCATGAAACTCATCATTA+TGG | 0.404570 | 7_3:-81911379 | None:intergenic |
| GTGAAACAGGAATCATCTAT+TGG | 0.407409 | 7_3:+81910823 | Msa1129900:intron |
| TTTGCGTTGCCACACATTAT+GGG | 0.408601 | 7_3:+81913590 | Msa1129900:CDS |
| AGCAGAATAGTTGTTATTTG+TGG | 0.411050 | 7_3:-81910876 | None:intergenic |
| TACTGTTGGAAAATATGAAA+TGG | 0.421099 | 7_3:+81913709 | Msa1129900:three_prime_UTR |
| TGCTCCTTATTCTGTTTACA+AGG | 0.424645 | 7_3:+81911007 | Msa1129900:CDS |
| GTTGCCACACATTATGGGTT+GGG | 0.425766 | 7_3:+81913595 | Msa1129900:CDS |
| AACCGACTTCAGTAGCTGAT+AGG | 0.440719 | 7_3:-81912198 | None:intergenic |
| CGTTGCCACACATTATGGGT+TGG | 0.443320 | 7_3:+81913594 | Msa1129900:CDS |
| ATATACCTTGATTTCATTGA+GGG | 0.447907 | 7_3:-81912268 | None:intergenic |
| GTAAATTGTAATATTTAAGA+AGG | 0.449316 | 7_3:+81913807 | Msa1129900:three_prime_UTR |
| GTCGGTTCTTTGATAGCCAT+TGG | 0.458218 | 7_3:+81912214 | Msa1129900:CDS |
| TTCTTATGCTGCAGTAATGC+TGG | 0.463315 | 7_3:+81912450 | Msa1129900:intron |
| TTGGGGAGCGCAAATATGAC+TGG | 0.493872 | 7_3:+81911406 | Msa1129900:CDS |
| GCAGTAATGCTGGTCAAGTA+AGG | 0.498490 | 7_3:+81912460 | Msa1129900:intron |
| AATAACAACTATTCTGCTAA+AGG | 0.500782 | 7_3:+81910881 | Msa1129900:CDS |
| TGAGATTTGAGATATTCATA+GGG | 0.512047 | 7_3:+81913965 | Msa1129900:three_prime_UTR |
| GAGTTTCATGCCTGCTATTG+GGG | 0.513089 | 7_3:+81911389 | Msa1129900:CDS |
| ATTGGAAGTTCTTTCCGCTA+GGG | 0.516317 | 7_3:+81910841 | Msa1129900:CDS |
| ATGACCCCTCAATGAAATCA+AGG | 0.516531 | 7_3:+81912263 | Msa1129900:CDS |
| TTGAAAGCTGACTGTCCCAC+TGG | 0.516551 | 7_3:-81913639 | None:intergenic |
| AATAGACAGTGTCACACATA+CGG | 0.516634 | 7_3:-81913943 | None:intergenic |
| ATTTGAGATATTCATAGGGG+TGG | 0.523214 | 7_3:+81913969 | Msa1129900:three_prime_UTR |
| TGGAATTGACAGCACAAAGA+AGG | 0.524145 | 7_3:-81913734 | None:intergenic |
| AATATACCTTGATTTCATTG+AGG | 0.524866 | 7_3:-81912269 | None:intergenic |
| TGCAACAAGAGGCACTTAGT+TGG | 0.525081 | 7_3:-81914032 | None:intergenic |
| GCCCTATCAGCTACTGAAGT+CGG | 0.527679 | 7_3:+81912196 | Msa1129900:CDS |
| ACCGACTTCAGTAGCTGATA+GGG | 0.538316 | 7_3:-81912197 | None:intergenic |
| AGGGAGTACCTGGAAGATGA+AGG | 0.540073 | 7_3:-81910730 | None:intergenic |
| TATTTGCGCTCCCCAATAGC+AGG | 0.541622 | 7_3:-81911399 | None:intergenic |
| TATTGGAAGTTCTTTCCGCT+AGG | 0.545874 | 7_3:+81910840 | Msa1129900:CDS |
| TTACTTTAGTATGCAACAAG+AGG | 0.546089 | 7_3:-81914043 | None:intergenic |
| ACAAAGTAGCCATTGCTATG+AGG | 0.558527 | 7_3:-81912501 | None:intergenic |
| ACATGAATCTTGGGGACCAA+TGG | 0.561311 | 7_3:-81912230 | None:intergenic |
| CCAAAGACTAGGATGGTATG+TGG | 0.561736 | 7_3:+81913774 | Msa1129900:three_prime_UTR |
| TGGGAAAAGTGAGTTACTGT+TGG | 0.566690 | 7_3:+81913695 | Msa1129900:exon |
| TCAATTAAGCCTCATAGCAA+TGG | 0.569726 | 7_3:+81912492 | Msa1129900:CDS |
| TTTAAGAAGGAAGCATGAGA+AGG | 0.571675 | 7_3:+81913820 | Msa1129900:three_prime_UTR |
| ACAAGAGGCACTTAGTTGGA+TGG | 0.574290 | 7_3:-81914028 | None:intergenic |
| ACATCCAACTTAGTAAAAGT+AGG | 0.596084 | 7_3:-81911062 | None:intergenic |
| GAGATTTGAGATATTCATAG+GGG | 0.608018 | 7_3:+81913966 | Msa1129900:three_prime_UTR |
| GCTCCTTATTCTGTTTACAA+GGG | 0.608711 | 7_3:+81911008 | Msa1129900:CDS |
| ATTCTCTTTGGTATTTAACA+CGG | 0.610530 | 7_3:-81912652 | None:intergenic |
| TATACCTTGATTTCATTGAG+GGG | 0.613978 | 7_3:-81912267 | None:intergenic |
| ATAGACAGTGTCACACATAC+GGG | 0.614266 | 7_3:-81913942 | None:intergenic |
| TAACTAATCAGCAGTCCAGT+GGG | 0.621978 | 7_3:+81913624 | Msa1129900:CDS |
| TATCAATCCAAAGACTAGGA+TGG | 0.631463 | 7_3:+81913767 | Msa1129900:three_prime_UTR |
| GTATTATCAATCCAAAGACT+AGG | 0.633141 | 7_3:+81913763 | Msa1129900:three_prime_UTR |
| AAGAATTCACATGAATCTTG+GGG | 0.637953 | 7_3:-81912238 | None:intergenic |
| AAAGAGGCATACACTGCAAG+CGG | 0.640513 | 7_3:-81912718 | None:intergenic |
| TGGGGAGCGCAAATATGACT+GGG | 0.642764 | 7_3:+81911407 | Msa1129900:CDS |
| CTAACTAATCAGCAGTCCAG+TGG | 0.653328 | 7_3:+81913623 | Msa1129900:CDS |
| TTAGTAAAAGTAGGAAGACA+AGG | 0.653333 | 7_3:-81911053 | None:intergenic |
| CGATCCCAACCCATAATGTG+TGG | 0.655749 | 7_3:-81913599 | None:intergenic |
| GTGTTCAATTCAAAATGTCG+AGG | 0.671963 | 7_3:-81910616 | None:intergenic |
| GCTCTTGTTGTTGATCGTCG+CGG | 0.693088 | 7_3:+81911354 | Msa1129900:CDS |
| GGCAGTAGAGAAATCCCTAG+CGG | 0.738730 | 7_3:-81910855 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATTATAGAATTTCATT+TGG | - | chr7_3:81914002-81914021 | None:intergenic | 10.0% |
| !! | TATTAATGAATGAAAAATTG+GGG | - | chr7_3:81910649-81910668 | None:intergenic | 15.0% |
| !! | CTATTAATGAATGAAAAATT+GGG | - | chr7_3:81910650-81910669 | None:intergenic | 15.0% |
| !! | AAAACATTGTTTAAATACTA+TGG | + | chr7_3:81911633-81911652 | Msa1129900:intron | 15.0% |
| !! | AATGATAATAAAAGAAAGTT+TGG | - | chr7_3:81913003-81913022 | None:intergenic | 15.0% |
| !! | GTAAATTGTAATATTTAAGA+AGG | + | chr7_3:81913807-81913826 | Msa1129900:three_prime_UTR | 15.0% |
| !! | GCTATTAATGAATGAAAAAT+TGG | - | chr7_3:81910651-81910670 | None:intergenic | 20.0% |
| !! | TGTTATTATTATTGTGAAAC+AGG | + | chr7_3:81910810-81910829 | Msa1129900:intron | 20.0% |
| !!! | ATTTTTATGCTTACATTGAT+TGG | + | chr7_3:81910937-81910956 | Msa1129900:intron | 20.0% |
| !! | AGGAATGTATTTAAATGATT+AGG | - | chr7_3:81911100-81911119 | None:intergenic | 20.0% |
| !! | AAGAAAGAAGAAAGAATAAA+AGG | - | chr7_3:81911457-81911476 | None:intergenic | 20.0% |
| !! | TCTCTATTACAAAATAAGAA+AGG | - | chr7_3:81912033-81912052 | None:intergenic | 20.0% |
| !! | TCAACAAACAAAAAAACTAA+TGG | - | chr7_3:81912390-81912409 | None:intergenic | 20.0% |
| !!! | TTTTAATACATTGGGTATTT+GGG | + | chr7_3:81912561-81912580 | Msa1129900:intron | 20.0% |
| !! | TAAAAATGTTGAATCAAGTT+TGG | - | chr7_3:81913151-81913170 | None:intergenic | 20.0% |
| ! | ATAACAGAGAAATTGAAAGA+AGG | - | chr7_3:81910770-81910789 | None:intergenic | 25.0% |
| ! | AATAACAACTATTCTGCTAA+AGG | + | chr7_3:81910881-81910900 | Msa1129900:CDS | 25.0% |
| ! | ATATTATATGCTTCACTTTC+AGG | + | chr7_3:81910963-81910982 | Msa1129900:intron | 25.0% |
| ! | GAATAAGCTATTTGTATAAG+CGG | - | chr7_3:81911245-81911264 | None:intergenic | 25.0% |
| ! | ATAAGTTGTTTATCCAAACA+TGG | + | chr7_3:81911280-81911299 | Msa1129900:intron | 25.0% |
| ! | ATTACAAGTTTACAAAGTAG+TGG | + | chr7_3:81911661-81911680 | Msa1129900:intron | 25.0% |
| !!! | TTAAGAGCATTTTATTGTCT+CGG | + | chr7_3:81911936-81911955 | Msa1129900:intron | 25.0% |
| ! | TAAAAGTTGAAAACATGAAG+CGG | - | chr7_3:81912006-81912025 | None:intergenic | 25.0% |
| ! | AGAATAACATATTGTCAACT+TGG | + | chr7_3:81912050-81912069 | Msa1129900:intron | 25.0% |
| ! | AAAGAATTCACATGAATCTT+GGG | - | chr7_3:81912242-81912261 | None:intergenic | 25.0% |
| ! | ATATACCTTGATTTCATTGA+GGG | - | chr7_3:81912271-81912290 | None:intergenic | 25.0% |
| ! | AATATACCTTGATTTCATTG+AGG | - | chr7_3:81912272-81912291 | None:intergenic | 25.0% |
| ! | TCTCTCATGAGATAATTAAT+TGG | - | chr7_3:81912325-81912344 | None:intergenic | 25.0% |
| ! | GTCACTAATTAACTTTCAAA+TGG | - | chr7_3:81912420-81912439 | None:intergenic | 25.0% |
| !! | TTGTTCACCTTTTAATACAT+TGG | + | chr7_3:81912552-81912571 | Msa1129900:intron | 25.0% |
| !! | TGTTCACCTTTTAATACATT+GGG | + | chr7_3:81912553-81912572 | Msa1129900:intron | 25.0% |
| ! | CAAATACCCAATGTATTAAA+AGG | - | chr7_3:81912562-81912581 | None:intergenic | 25.0% |
| !! | CTTTTAATACATTGGGTATT+TGG | + | chr7_3:81912560-81912579 | Msa1129900:intron | 25.0% |
| ! | ATTCTCTTTGGTATTTAACA+CGG | - | chr7_3:81912655-81912674 | None:intergenic | 25.0% |
| ! | TGTCTTAAATAACAATGAAG+TGG | + | chr7_3:81912823-81912842 | Msa1129900:intron | 25.0% |
| !! | TTACACTTTTATTGTCATTC+CGG | + | chr7_3:81913203-81913222 | Msa1129900:intron | 25.0% |
| !!! | TTTTGTTTTCAGGTAATGAT+TGG | + | chr7_3:81913265-81913284 | Msa1129900:intron | 25.0% |
| ! | TTCAAAAATTGCAGTTAACT+AGG | - | chr7_3:81913406-81913425 | None:intergenic | 25.0% |
| !! | TTAAAAGCACAAGTATGATT+GGG | - | chr7_3:81913524-81913543 | None:intergenic | 25.0% |
| !! | ATTAAAAGCACAAGTATGAT+TGG | - | chr7_3:81913525-81913544 | None:intergenic | 25.0% |
| ! | AAAATTTGTGAGTTCATCTT+TGG | - | chr7_3:81913665-81913684 | None:intergenic | 25.0% |
| ! | TACTGTTGGAAAATATGAAA+TGG | + | chr7_3:81913709-81913728 | Msa1129900:three_prime_UTR | 25.0% |
| !! | TGGATTGATAATACACAAAA+TGG | - | chr7_3:81913757-81913776 | None:intergenic | 25.0% |
| ! | AAGCAGAAAAAGAATAAACA+AGG | - | chr7_3:81913892-81913911 | None:intergenic | 25.0% |
| !! | TTGAGATTTGAGATATTCAT+AGG | + | chr7_3:81913964-81913983 | Msa1129900:three_prime_UTR | 25.0% |
| !! | TGAGATTTGAGATATTCATA+GGG | + | chr7_3:81913965-81913984 | Msa1129900:three_prime_UTR | 25.0% |
| !! | AGCAGAATAGTTGTTATTTG+TGG | - | chr7_3:81910879-81910898 | None:intergenic | 30.0% |
| TTAGTAAAAGTAGGAAGACA+AGG | - | chr7_3:81911056-81911075 | None:intergenic | 30.0% | |
| !! | TCTTCCTACTTTTACTAAGT+TGG | + | chr7_3:81911058-81911077 | Msa1129900:CDS | 30.0% |
| ACATCCAACTTAGTAAAAGT+AGG | - | chr7_3:81911065-81911084 | None:intergenic | 30.0% | |
| ! | AAATACATTCCTTTTTACGC+TGG | + | chr7_3:81911108-81911127 | Msa1129900:intron | 30.0% |
| ! | ATTTCCATTTGTTACAGTCT+GGG | + | chr7_3:81911331-81911350 | Msa1129900:intron | 30.0% |
| AATTGTGTTTACGTCTATTG+TGG | + | chr7_3:81911565-81911584 | Msa1129900:intron | 30.0% | |
| TTAAATACTACAGTTGTAGC+AGG | + | chr7_3:81911750-81911769 | Msa1129900:intron | 30.0% | |
| AAGAGTTTAAAGAGACATGA+GGG | - | chr7_3:81911918-81911937 | None:intergenic | 30.0% | |
| TAAGAGTTTAAAGAGACATG+AGG | - | chr7_3:81911919-81911938 | None:intergenic | 30.0% | |
| !!! | TAAGAGCATTTTATTGTCTC+GGG | + | chr7_3:81911937-81911956 | Msa1129900:intron | 30.0% |
| AACTTCCGAAACAATGTATT+AGG | - | chr7_3:81912076-81912095 | None:intergenic | 30.0% | |
| AAGTTCTACTTGATACTTGT+AGG | + | chr7_3:81912091-81912110 | Msa1129900:intron | 30.0% | |
| AAGAATTCACATGAATCTTG+GGG | - | chr7_3:81912241-81912260 | None:intergenic | 30.0% | |
| GAAAGAATTCACATGAATCT+TGG | - | chr7_3:81912243-81912262 | None:intergenic | 30.0% | |
| TATACCTTGATTTCATTGAG+GGG | - | chr7_3:81912270-81912289 | None:intergenic | 30.0% | |
| GTATATTTCACGATTCTCTA+GGG | + | chr7_3:81912285-81912304 | Msa1129900:intron | 30.0% | |
| ATCTCATGAGAGAACTATAT+AGG | + | chr7_3:81912332-81912351 | Msa1129900:intron | 30.0% | |
| AGGAACACTAAAATTCTCTT+TGG | - | chr7_3:81912667-81912686 | None:intergenic | 30.0% | |
| GTGTAACGTAATGACATAAT+GGG | - | chr7_3:81912766-81912785 | None:intergenic | 30.0% | |
| TACACCTTTCACAAGTTATA+TGG | + | chr7_3:81912781-81912800 | Msa1129900:intron | 30.0% | |
| ! | ATCATTGTTCTTTCTAGCAT+TGG | + | chr7_3:81912865-81912884 | Msa1129900:intron | 30.0% |
| ! | ATCATTGTTCTTTCTAGCAT+TGG | + | chr7_3:81912865-81912884 | Msa1129900:intron | 30.0% |
| CCTGAAAACAAAACAATAGT+CGG | - | chr7_3:81913258-81913277 | None:intergenic | 30.0% | |
| TCCAGAATCAGATAAAATAG+GGG | - | chr7_3:81913501-81913520 | None:intergenic | 30.0% | |
| GTCCAGAATCAGATAAAATA+GGG | - | chr7_3:81913502-81913521 | None:intergenic | 30.0% | |
| ! | GAACTCACAAATTTTAGACT+TGG | + | chr7_3:81913670-81913689 | Msa1129900:CDS | 30.0% |
| ! | ACAAATTTTAGACTTGGAGT+GGG | + | chr7_3:81913676-81913695 | Msa1129900:CDS | 30.0% |
| GTATTATCAATCCAAAGACT+AGG | + | chr7_3:81913763-81913782 | Msa1129900:three_prime_UTR | 30.0% | |
| !! | TTTCTGCTTTTGTTTACTTC+AGG | + | chr7_3:81913903-81913922 | Msa1129900:three_prime_UTR | 30.0% |
| ! | GAGATTTGAGATATTCATAG+GGG | + | chr7_3:81913966-81913985 | Msa1129900:three_prime_UTR | 30.0% |
| GAAAGAAGGAAAGAGATTGT+AGG | - | chr7_3:81910756-81910775 | None:intergenic | 35.0% | |
| GTGAAACAGGAATCATCTAT+TGG | + | chr7_3:81910823-81910842 | Msa1129900:intron | 35.0% | |
| TGCTCCTTATTCTGTTTACA+AGG | + | chr7_3:81911007-81911026 | Msa1129900:CDS | 35.0% | |
| GCTCCTTATTCTGTTTACAA+GGG | + | chr7_3:81911008-81911027 | Msa1129900:CDS | 35.0% | |
| TTGCCCTTGTAAACAGAATA+AGG | - | chr7_3:81911014-81911033 | None:intergenic | 35.0% | |
| AAAAACCAACCAGCGTAAAA+AGG | - | chr7_3:81911120-81911139 | None:intergenic | 35.0% | |
| !!! | TTTTACGCTGGTTGGTTTTT+AGG | + | chr7_3:81911120-81911139 | Msa1129900:intron | 35.0% |
| !!! | TTTACGCTGGTTGGTTTTTA+GGG | + | chr7_3:81911121-81911140 | Msa1129900:intron | 35.0% |
| !!! | GTTGGTTTTTAGGGTTTGTT+TGG | + | chr7_3:81911130-81911149 | Msa1129900:intron | 35.0% |
| ! | CAGATTAGTTAGACCATGTT+TGG | - | chr7_3:81911296-81911315 | None:intergenic | 35.0% |
| ! | CATTTCCATTTGTTACAGTC+TGG | + | chr7_3:81911330-81911349 | Msa1129900:intron | 35.0% |
| ! | TTTCCATTTGTTACAGTCTG+GGG | + | chr7_3:81911332-81911351 | Msa1129900:intron | 35.0% |
| AGGCATGAAACTCATCATTA+TGG | - | chr7_3:81911382-81911401 | None:intergenic | 35.0% | |
| CGAAGATTGATCATGAAGTT+CGG | + | chr7_3:81911540-81911559 | Msa1129900:intron | 35.0% | |
| ! | GAGAAAAGATCTGTTGACTA+TGG | - | chr7_3:81911895-81911914 | None:intergenic | 35.0% |
| AGAGTTTAAAGAGACATGAG+GGG | - | chr7_3:81911917-81911936 | None:intergenic | 35.0% | |
| CTTGGCCTAATACATTGTTT+CGG | + | chr7_3:81912068-81912087 | Msa1129900:intron | 35.0% | |
| TTCTACTTGATACTTGTAGG+AGG | + | chr7_3:81912094-81912113 | Msa1129900:intron | 35.0% | |
| GGTATATTTCACGATTCTCT+AGG | + | chr7_3:81912284-81912303 | Msa1129900:intron | 35.0% | |
| !! | TCTCTAGGGTTAGTAATTGA+TGG | + | chr7_3:81912299-81912318 | Msa1129900:intron | 35.0% |
| TCAATTAAGCCTCATAGCAA+TGG | + | chr7_3:81912492-81912511 | Msa1129900:CDS | 35.0% | |
| AAGAGGGAGACAAAATCATA+AGG | - | chr7_3:81912614-81912633 | None:intergenic | 35.0% | |
| TTAACAACAGCTGTCAAAGA+GGG | - | chr7_3:81912630-81912649 | None:intergenic | 35.0% | |
| TGAGAAACTAAGCAGAAAAG+AGG | - | chr7_3:81912737-81912756 | None:intergenic | 35.0% | |
| GGTGTAACGTAATGACATAA+TGG | - | chr7_3:81912767-81912786 | None:intergenic | 35.0% | |
| ! | AGGACCATATAACTTGTGAA+AGG | - | chr7_3:81912788-81912807 | None:intergenic | 35.0% |
| AGACATGAAAAGCAGAAACT+AGG | - | chr7_3:81912808-81912827 | None:intergenic | 35.0% | |
| !! | TTGTTCTTTCTAGCATTGGT+AGG | + | chr7_3:81912869-81912888 | Msa1129900:intron | 35.0% |
| !! | TGTTCTTTCTAGCATTGGTA+GGG | + | chr7_3:81912870-81912889 | Msa1129900:intron | 35.0% |
| !! | TTGTTCTTTCTAGCATTGGT+AGG | + | chr7_3:81912869-81912888 | Msa1129900:intron | 35.0% |
| !! | TGTTCTTTCTAGCATTGGTA+GGG | + | chr7_3:81912870-81912889 | Msa1129900:intron | 35.0% |
| ! | TTTTATTGTCATTCCGGAAC+TGG | + | chr7_3:81913209-81913228 | Msa1129900:intron | 35.0% |
| !!! | CCGACTATTGTTTTGTTTTC+AGG | + | chr7_3:81913255-81913274 | Msa1129900:intron | 35.0% |
| CATATACGCGAGTTAATCAT+AGG | - | chr7_3:81913325-81913344 | None:intergenic | 35.0% | |
| ! | ACTGCAATTTTTGAATGCGT+TGG | + | chr7_3:81913411-81913430 | Msa1129900:intron | 35.0% |
| AATCAGATAAAATAGGGGGT+GGG | - | chr7_3:81913496-81913515 | None:intergenic | 35.0% | |
| CCAGAATCAGATAAAATAGG+GGG | - | chr7_3:81913500-81913519 | None:intergenic | 35.0% | |
| GGTCCAGAATCAGATAAAAT+AGG | - | chr7_3:81913503-81913522 | None:intergenic | 35.0% | |
| ! | CACAAATTTTAGACTTGGAG+TGG | + | chr7_3:81913675-81913694 | Msa1129900:CDS | 35.0% |
| TATCAATCCAAAGACTAGGA+TGG | + | chr7_3:81913767-81913786 | Msa1129900:three_prime_UTR | 35.0% | |
| ! | TTTAAGAAGGAAGCATGAGA+AGG | + | chr7_3:81913820-81913839 | Msa1129900:three_prime_UTR | 35.0% |
| AATAGACAGTGTCACACATA+CGG | - | chr7_3:81913946-81913965 | None:intergenic | 35.0% | |
| ! | ATTTGAGATATTCATAGGGG+TGG | + | chr7_3:81913969-81913988 | Msa1129900:three_prime_UTR | 35.0% |
| GAAGGAAAGAGATTGTAGGA+GGG | - | chr7_3:81910752-81910771 | None:intergenic | 40.0% | |
| AGAAGGAAAGAGATTGTAGG+AGG | - | chr7_3:81910753-81910772 | None:intergenic | 40.0% | |
| TATTGGAAGTTCTTTCCGCT+AGG | + | chr7_3:81910840-81910859 | Msa1129900:CDS | 40.0% | |
| ATTGGAAGTTCTTTCCGCTA+GGG | + | chr7_3:81910841-81910860 | Msa1129900:CDS | 40.0% | |
| ! | ACATTCCTTTTTACGCTGGT+TGG | + | chr7_3:81911112-81911131 | Msa1129900:intron | 40.0% |
| ATGAGTTTCATGCCTGCTAT+TGG | + | chr7_3:81911387-81911406 | Msa1129900:CDS | 40.0% | |
| TGAGTTTCATGCCTGCTATT+GGG | + | chr7_3:81911388-81911407 | Msa1129900:CDS | 40.0% | |
| CACAATTGACAGAACTCTCA+TGG | - | chr7_3:81911710-81911729 | None:intergenic | 40.0% | |
| ATGACCCCTCAATGAAATCA+AGG | + | chr7_3:81912263-81912282 | Msa1129900:CDS | 40.0% | |
| TTCTTATGCTGCAGTAATGC+TGG | + | chr7_3:81912450-81912469 | Msa1129900:intron | 40.0% | |
| ACAAAGTAGCCATTGCTATG+AGG | - | chr7_3:81912504-81912523 | None:intergenic | 40.0% | |
| CTACTTTGTCTCTCTGTGTA+AGG | + | chr7_3:81912515-81912534 | Msa1129900:intron | 40.0% | |
| GTTAACAACAGCTGTCAAAG+AGG | - | chr7_3:81912631-81912650 | None:intergenic | 40.0% | |
| TGCTAAATGGTACGTACACT+AGG | - | chr7_3:81912925-81912944 | None:intergenic | 40.0% | |
| ACTCGCGTATATGAAGTTTC+AGG | + | chr7_3:81913332-81913351 | Msa1129900:intron | 40.0% | |
| CCAGCGAAGTTAAAAAACCA+GGG | - | chr7_3:81913446-81913465 | None:intergenic | 40.0% | |
| ACCAGCGAAGTTAAAAAACC+AGG | - | chr7_3:81913447-81913466 | None:intergenic | 40.0% | |
| ATCAGATAAAATAGGGGGTG+GGG | - | chr7_3:81913495-81913514 | None:intergenic | 40.0% | |
| GAATCAGATAAAATAGGGGG+TGG | - | chr7_3:81913497-81913516 | None:intergenic | 40.0% | |
| ! | CCCCCTATTTTATCTGATTC+TGG | + | chr7_3:81913497-81913516 | Msa1129900:intron | 40.0% |
| TTTGCGTTGCCACACATTAT+GGG | + | chr7_3:81913590-81913609 | Msa1129900:CDS | 40.0% | |
| TAACTAATCAGCAGTCCAGT+GGG | + | chr7_3:81913624-81913643 | Msa1129900:CDS | 40.0% | |
| TGGGAAAAGTGAGTTACTGT+TGG | + | chr7_3:81913695-81913714 | Msa1129900:exon | 40.0% | |
| TGGAATTGACAGCACAAAGA+AGG | - | chr7_3:81913737-81913756 | None:intergenic | 40.0% | |
| ATAGACAGTGTCACACATAC+GGG | - | chr7_3:81913945-81913964 | None:intergenic | 40.0% | |
| TAAGCGCTCGTGAAACTCAT+TGG | + | chr7_3:81911195-81911214 | Msa1129900:intron | 45.0% | |
| GAGTTTCATGCCTGCTATTG+GGG | + | chr7_3:81911389-81911408 | Msa1129900:CDS | 45.0% | |
| GGACTATGCTATGCTCGTTT+AGG | + | chr7_3:81911682-81911701 | Msa1129900:intron | 45.0% | |
| ! | ACCGACTTCAGTAGCTGATA+GGG | - | chr7_3:81912200-81912219 | None:intergenic | 45.0% |
| ! | AACCGACTTCAGTAGCTGAT+AGG | - | chr7_3:81912201-81912220 | None:intergenic | 45.0% |
| ! | GTCGGTTCTTTGATAGCCAT+TGG | + | chr7_3:81912214-81912233 | Msa1129900:CDS | 45.0% |
| ACATGAATCTTGGGGACCAA+TGG | - | chr7_3:81912233-81912252 | None:intergenic | 45.0% | |
| GCAGTAATGCTGGTCAAGTA+AGG | + | chr7_3:81912460-81912479 | Msa1129900:intron | 45.0% | |
| GCAAACTCAGCAGTTGTAAC+AGG | - | chr7_3:81912687-81912706 | None:intergenic | 45.0% | |
| ! | AAAGAGGCATACACTGCAAG+CGG | - | chr7_3:81912721-81912740 | None:intergenic | 45.0% |
| !! | TCTTTCTAGCATTGGTAGGG+AGG | + | chr7_3:81912873-81912892 | Msa1129900:intron | 45.0% |
| TACGTACCATTTAGCAACGC+AGG | + | chr7_3:81912929-81912948 | Msa1129900:intron | 45.0% | |
| ACAAGTCCTGCGTTGCTAAA+TGG | - | chr7_3:81912938-81912957 | None:intergenic | 45.0% | |
| CAGGACTTGTCATGCAACAT+TGG | + | chr7_3:81912948-81912967 | Msa1129900:intron | 45.0% | |
| !! | TCTTTCTAGCATTGGTAGGG+AGG | + | chr7_3:81912873-81912892 | Msa1129900:intron | 45.0% |
| GCGTTGCTAAATGGTACACT+AGG | - | chr7_3:81913077-81913096 | None:intergenic | 45.0% | |
| AGTGTACCATTTAGCAACGC+AGG | + | chr7_3:81913077-81913096 | Msa1129900:intron | 45.0% | |
| ACAAGTCCTGCGTTGCTAAA+TGG | - | chr7_3:81912938-81912957 | None:intergenic | 45.0% | |
| CAGGACTTGTCATGCAACAT+TGG | + | chr7_3:81912948-81912967 | Msa1129900:intron | 45.0% | |
| TATGCCATGTCTGGTCAAGT+TGG | + | chr7_3:81913232-81913251 | Msa1129900:intron | 45.0% | |
| !!! | CCCTGGTTTTTTAACTTCGC+TGG | + | chr7_3:81913443-81913462 | Msa1129900:intron | 45.0% |
| GTTTGCGTTGCCACACATTA+TGG | + | chr7_3:81913589-81913608 | Msa1129900:intron | 45.0% | |
| GTTGCCACACATTATGGGTT+GGG | + | chr7_3:81913595-81913614 | Msa1129900:CDS | 45.0% | |
| CTAACTAATCAGCAGTCCAG+TGG | + | chr7_3:81913623-81913642 | Msa1129900:CDS | 45.0% | |
| ! | CCACATACCATCCTAGTCTT+TGG | - | chr7_3:81913777-81913796 | None:intergenic | 45.0% |
| CCAAAGACTAGGATGGTATG+TGG | + | chr7_3:81913774-81913793 | Msa1129900:three_prime_UTR | 45.0% | |
| !! | ACAAGAGGCACTTAGTTGGA+TGG | - | chr7_3:81914031-81914050 | None:intergenic | 45.0% |
| GCTTGCTTCCTTCATCTTCC+AGG | + | chr7_3:81910722-81910741 | Msa1129900:CDS | 50.0% | |
| !! | AGGGAGTACCTGGAAGATGA+AGG | - | chr7_3:81910733-81910752 | None:intergenic | 50.0% |
| !! | AGATTGTAGGAGGGAGTACC+TGG | - | chr7_3:81910743-81910762 | None:intergenic | 50.0% |
| GGCAGTAGAGAAATCCCTAG+CGG | - | chr7_3:81910858-81910877 | None:intergenic | 50.0% | |
| GAGCCCCAGACTGTAACAAA+TGG | - | chr7_3:81911338-81911357 | None:intergenic | 50.0% | |
| !! | GCTCTTGTTGTTGATCGTCG+CGG | + | chr7_3:81911354-81911373 | Msa1129900:CDS | 50.0% |
| TATTTGCGCTCCCCAATAGC+AGG | - | chr7_3:81911402-81911421 | None:intergenic | 50.0% | |
| ! | TTGGGGAGCGCAAATATGAC+TGG | + | chr7_3:81911406-81911425 | Msa1129900:CDS | 50.0% |
| ! | TGGGGAGCGCAAATATGACT+GGG | + | chr7_3:81911407-81911426 | Msa1129900:CDS | 50.0% |
| TGTATCGTAGCAGAGCGAGT+GGG | - | chr7_3:81911795-81911814 | None:intergenic | 50.0% | |
| GCCCTATCAGCTACTGAAGT+CGG | + | chr7_3:81912196-81912215 | Msa1129900:CDS | 50.0% | |
| CAGACATGGCATACCAGTTC+CGG | - | chr7_3:81913225-81913244 | None:intergenic | 50.0% | |
| ! | TGCGTTGGTCTGTTATTCCC+TGG | + | chr7_3:81913426-81913445 | Msa1129900:intron | 50.0% |
| CGTTGCCACACATTATGGGT+TGG | + | chr7_3:81913594-81913613 | Msa1129900:CDS | 50.0% | |
| CGATCCCAACCCATAATGTG+TGG | - | chr7_3:81913602-81913621 | None:intergenic | 50.0% | |
| TTGAAAGCTGACTGTCCCAC+TGG | - | chr7_3:81913642-81913661 | None:intergenic | 50.0% | |
| GTGTATCGTAGCAGAGCGAG+TGG | - | chr7_3:81911796-81911815 | None:intergenic | 55.0% | |
| ! | ACCACGCAAGCAAGCTTGCT+GGG | - | chr7_3:81911968-81911987 | None:intergenic | 55.0% |
| CGGAACTGGTATGCCATGTC+TGG | + | chr7_3:81913223-81913242 | Msa1129900:intron | 55.0% | |
| TCGGCCAACTTGACCAGACA+TGG | - | chr7_3:81913239-81913258 | None:intergenic | 55.0% | |
| GACCACGCAAGCAAGCTTGC+TGG | - | chr7_3:81911969-81911988 | None:intergenic | 60.0% | |
| ! | GCAAGCTTGCTTGCGTGGTC+AGG | + | chr7_3:81911969-81911988 | Msa1129900:intron | 60.0% |
| ! | GCCCAGCAAGCTTGCTTGCG+TGG | + | chr7_3:81911964-81911983 | Msa1129900:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 81910618 | 81914050 | 81910618 | ID=Msa1129900;Name=Msa1129900 |
| chr7_3 | mRNA | 81910618 | 81914050 | 81910618 | ID=Msa1129900-mRNA-1;Parent=Msa1129900;Name=Msa1129900-mRNA-1;_AED=0.07;_eAED=0.07;_QI=88|1|1|1|1|1|8|344|222 |
| chr7_3 | exon | 81910618 | 81910743 | 81910618 | ID=Msa1129900-mRNA-1:exon:23957;Parent=Msa1129900-mRNA-1 |
| chr7_3 | exon | 81910832 | 81910902 | 81910832 | ID=Msa1129900-mRNA-1:exon:23958;Parent=Msa1129900-mRNA-1 |
| chr7_3 | exon | 81910985 | 81911082 | 81910985 | ID=Msa1129900-mRNA-1:exon:23959;Parent=Msa1129900-mRNA-1 |
| chr7_3 | exon | 81911348 | 81911440 | 81911348 | ID=Msa1129900-mRNA-1:exon:23960;Parent=Msa1129900-mRNA-1 |
| chr7_3 | exon | 81912190 | 81912284 | 81912190 | ID=Msa1129900-mRNA-1:exon:23961;Parent=Msa1129900-mRNA-1 |
| chr7_3 | exon | 81912464 | 81912531 | 81912464 | ID=Msa1129900-mRNA-1:exon:23962;Parent=Msa1129900-mRNA-1 |
| chr7_3 | exon | 81912640 | 81912728 | 81912640 | ID=Msa1129900-mRNA-1:exon:23963;Parent=Msa1129900-mRNA-1 |
| chr7_3 | exon | 81913590 | 81914050 | 81913590 | ID=Msa1129900-mRNA-1:exon:23964;Parent=Msa1129900-mRNA-1 |
| chr7_3 | five_prime_UTR | 81910618 | 81910705 | 81910618 | ID=Msa1129900-mRNA-1:five_prime_utr;Parent=Msa1129900-mRNA-1 |
| chr7_3 | CDS | 81910706 | 81910743 | 81910706 | ID=Msa1129900-mRNA-1:cds;Parent=Msa1129900-mRNA-1 |
| chr7_3 | CDS | 81910832 | 81910902 | 81910832 | ID=Msa1129900-mRNA-1:cds;Parent=Msa1129900-mRNA-1 |
| chr7_3 | CDS | 81910985 | 81911082 | 81910985 | ID=Msa1129900-mRNA-1:cds;Parent=Msa1129900-mRNA-1 |
| chr7_3 | CDS | 81911348 | 81911440 | 81911348 | ID=Msa1129900-mRNA-1:cds;Parent=Msa1129900-mRNA-1 |
| chr7_3 | CDS | 81912190 | 81912284 | 81912190 | ID=Msa1129900-mRNA-1:cds;Parent=Msa1129900-mRNA-1 |
| chr7_3 | CDS | 81912464 | 81912531 | 81912464 | ID=Msa1129900-mRNA-1:cds;Parent=Msa1129900-mRNA-1 |
| chr7_3 | CDS | 81912640 | 81912728 | 81912640 | ID=Msa1129900-mRNA-1:cds;Parent=Msa1129900-mRNA-1 |
| chr7_3 | CDS | 81913590 | 81913706 | 81913590 | ID=Msa1129900-mRNA-1:cds;Parent=Msa1129900-mRNA-1 |
| chr7_3 | three_prime_UTR | 81913707 | 81914050 | 81913707 | ID=Msa1129900-mRNA-1:three_prime_utr;Parent=Msa1129900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
