Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0184260 | XP_003589021.1 | 93.238 | 281 | 6 | 1 | 1 | 268 | 1 | 281 | 0.0 | 526 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0184260 | sp|Q7FRS8|CNBLA_ARATH | 60.700 | 257 | 78 | 2 | 9 | 265 | 20 | 253 | 2.85e-104 | 306 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0184260 | G7IB88 | 93.238 | 281 | 6 | 1 | 1 | 268 | 1 | 281 | 0.0 | 526 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0098610 | Msa0184260 | 0.894036 | 3.596566e-75 | -8.615850e-47 |
| Msa0184260 | Msa1128350 | 0.801360 | 9.342220e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0184260 | MtrunA17_Chr1g0151621 | 90.672 | 268 | 6 | 1 | 1 | 268 | 1 | 249 | 3.88e-176 | 485 |
| Msa0184260 | MtrunA17_Chr8g0341941 | 54.864 | 257 | 93 | 3 | 12 | 264 | 14 | 251 | 3.62e-87 | 260 |
| Msa0184260 | MtrunA17_Chr4g0076551 | 66.667 | 180 | 60 | 0 | 86 | 265 | 44 | 223 | 1.46e-84 | 252 |
| Msa0184260 | MtrunA17_Chr5g0446931 | 65.574 | 183 | 63 | 0 | 86 | 268 | 43 | 225 | 1.96e-84 | 252 |
| Msa0184260 | MtrunA17_Chr3g0102821 | 66.667 | 180 | 60 | 0 | 86 | 265 | 43 | 222 | 2.31e-84 | 251 |
| Msa0184260 | MtrunA17_Chr4g0055421 | 54.585 | 229 | 80 | 2 | 36 | 264 | 2 | 206 | 4.22e-79 | 238 |
| Msa0184260 | MtrunA17_Chr2g0290771 | 61.326 | 181 | 70 | 0 | 85 | 265 | 7 | 187 | 1.17e-78 | 236 |
| Msa0184260 | MtrunA17_Chr8g0388331 | 61.667 | 180 | 69 | 0 | 86 | 265 | 28 | 207 | 1.85e-77 | 233 |
| Msa0184260 | MtrunA17_Chr8g0346911 | 58.011 | 181 | 76 | 0 | 86 | 266 | 51 | 231 | 1.99e-72 | 221 |
| Msa0184260 | MtrunA17_Chr2g0290751 | 60.000 | 165 | 66 | 0 | 86 | 250 | 46 | 210 | 2.72e-68 | 210 |
| Msa0184260 | MtrunA17_Chr2g0290781 | 55.556 | 180 | 80 | 0 | 86 | 265 | 48 | 227 | 1.84e-67 | 209 |
| Msa0184260 | MtrunA17_Chr2g0290761 | 59.394 | 165 | 67 | 0 | 86 | 250 | 46 | 210 | 8.19e-67 | 206 |
| Msa0184260 | MtrunA17_Chr4g0063121 | 44.633 | 177 | 78 | 1 | 88 | 264 | 7 | 163 | 2.74e-47 | 157 |
| Msa0184260 | MtrunA17_Chr3g0126801 | 66.667 | 96 | 32 | 0 | 170 | 265 | 6 | 101 | 1.75e-42 | 141 |
| Msa0184260 | MtrunA17_Chr3g0126811 | 67.073 | 82 | 27 | 0 | 86 | 167 | 29 | 110 | 3.06e-32 | 115 |
| Msa0184260 | MtrunA17_Chr5g0399921 | 60.920 | 87 | 34 | 0 | 87 | 173 | 28 | 114 | 8.31e-28 | 103 |
| Msa0184260 | MtrunA17_Chr8g0388321 | 43.697 | 119 | 42 | 2 | 78 | 187 | 62 | 164 | 5.86e-22 | 89.7 |
| Msa0184260 | MtrunA17_Chr8g0388311 | 49.296 | 71 | 36 | 0 | 190 | 260 | 1 | 71 | 1.50e-20 | 83.6 |
| Msa0184260 | MtrunA17_Chr5g0399931 | 55.556 | 72 | 32 | 0 | 190 | 261 | 1 | 72 | 8.78e-20 | 81.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0184260 | AT4G33000.2 | 60.153 | 261 | 81 | 2 | 5 | 265 | 6 | 243 | 1.54e-105 | 306 |
| Msa0184260 | AT4G33000.1 | 60.700 | 257 | 78 | 2 | 9 | 265 | 20 | 253 | 2.90e-105 | 306 |
| Msa0184260 | AT5G24270.5 | 68.927 | 177 | 55 | 0 | 85 | 261 | 6 | 182 | 1.31e-85 | 254 |
| Msa0184260 | AT5G24270.4 | 67.778 | 180 | 58 | 0 | 86 | 265 | 32 | 211 | 2.04e-84 | 252 |
| Msa0184260 | AT5G24270.1 | 67.778 | 180 | 58 | 0 | 86 | 265 | 32 | 211 | 2.04e-84 | 252 |
| Msa0184260 | AT5G24270.2 | 67.778 | 180 | 58 | 0 | 86 | 265 | 32 | 211 | 2.04e-84 | 252 |
| Msa0184260 | AT4G26570.1 | 66.111 | 180 | 61 | 0 | 86 | 265 | 43 | 222 | 3.56e-84 | 251 |
| Msa0184260 | AT4G26570.2 | 64.674 | 184 | 61 | 1 | 86 | 265 | 43 | 226 | 5.38e-82 | 246 |
| Msa0184260 | AT5G55990.1 | 65.556 | 180 | 62 | 0 | 86 | 265 | 43 | 222 | 7.14e-82 | 246 |
| Msa0184260 | AT5G55990.2 | 65.556 | 180 | 62 | 0 | 86 | 265 | 43 | 222 | 7.14e-82 | 246 |
| Msa0184260 | AT5G47100.1 | 64.444 | 180 | 64 | 0 | 86 | 265 | 28 | 207 | 2.99e-79 | 238 |
| Msa0184260 | AT1G64480.2 | 62.222 | 180 | 68 | 0 | 86 | 265 | 32 | 211 | 2.08e-78 | 236 |
| Msa0184260 | AT1G64480.3 | 62.222 | 180 | 68 | 0 | 86 | 265 | 32 | 211 | 2.08e-78 | 236 |
| Msa0184260 | AT1G64480.1 | 62.222 | 180 | 68 | 0 | 86 | 265 | 32 | 211 | 2.08e-78 | 236 |
| Msa0184260 | AT4G17615.4 | 53.478 | 230 | 83 | 2 | 36 | 265 | 2 | 207 | 1.80e-77 | 234 |
| Msa0184260 | AT4G17615.1 | 53.478 | 230 | 83 | 2 | 36 | 265 | 2 | 207 | 1.80e-77 | 234 |
| Msa0184260 | AT4G17615.5 | 53.478 | 230 | 83 | 2 | 36 | 265 | 2 | 207 | 1.80e-77 | 234 |
| Msa0184260 | AT4G33000.5 | 56.604 | 212 | 69 | 2 | 5 | 216 | 6 | 194 | 8.34e-75 | 227 |
| Msa0184260 | AT4G33000.4 | 57.143 | 210 | 67 | 2 | 5 | 214 | 6 | 192 | 1.23e-74 | 226 |
| Msa0184260 | AT4G33000.6 | 57.143 | 210 | 67 | 2 | 5 | 214 | 6 | 192 | 1.23e-74 | 226 |
| Msa0184260 | AT1G64480.4 | 62.651 | 166 | 62 | 0 | 86 | 251 | 32 | 197 | 7.48e-72 | 219 |
| Msa0184260 | AT4G17615.3 | 51.351 | 222 | 84 | 2 | 36 | 257 | 2 | 199 | 4.48e-69 | 214 |
| Msa0184260 | AT5G24270.3 | 64.286 | 154 | 55 | 0 | 108 | 261 | 7 | 160 | 3.33e-68 | 209 |
| Msa0184260 | AT4G16350.2 | 54.190 | 179 | 78 | 1 | 86 | 264 | 41 | 215 | 2.10e-64 | 201 |
| Msa0184260 | AT4G16350.1 | 54.190 | 179 | 78 | 1 | 86 | 264 | 41 | 215 | 2.10e-64 | 201 |
| Msa0184260 | AT4G17615.2 | 60.131 | 153 | 61 | 0 | 114 | 266 | 14 | 166 | 2.15e-62 | 194 |
| Msa0184260 | AT4G26560.1 | 48.936 | 188 | 83 | 2 | 91 | 265 | 23 | 210 | 5.50e-58 | 184 |
| Msa0184260 | AT4G01420.1 | 47.399 | 173 | 91 | 0 | 89 | 261 | 30 | 202 | 2.49e-52 | 169 |
| Msa0184260 | AT5G47100.2 | 63.281 | 128 | 47 | 0 | 86 | 213 | 28 | 155 | 8.43e-52 | 167 |
| Msa0184260 | AT4G33000.3 | 52.439 | 164 | 55 | 2 | 5 | 168 | 6 | 146 | 7.41e-49 | 159 |
| Msa0184260 | AT4G01420.2 | 47.239 | 163 | 86 | 0 | 89 | 251 | 30 | 192 | 2.40e-48 | 159 |
Find 62 sgRNAs with CRISPR-Local
Find 335 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCAAGTAAGCTTGTCTTTA+AGG | 0.023685 | 1_4:-73581804 | Msa0184260:three_prime_UTR |
| GTAGATTATGTTTCTGTTTA+TGG | 0.035791 | 1_4:+73587697 | Msa0184270:intron |
| CATGAAAACTTGGTGGCTTT+AGG | 0.228877 | 1_4:+73582006 | None:intergenic |
| TAATCAAACCTATGAATTAT+AGG | 0.236206 | 1_4:+73581934 | None:intergenic |
| CTAGCCTCTATGATCGAAAT+TGG | 0.270825 | 1_4:+73587576 | Msa0184270:intron |
| ATGAAAACTTGGTGGCTTTA+GGG | 0.270974 | 1_4:+73582007 | None:intergenic |
| GGATTGGTTATTGCTGTAAA+TGG | 0.273428 | 1_4:-73582097 | Msa0184260:three_prime_UTR |
| CGGTCACTCTTTATGTATAA+TGG | 0.295450 | 1_4:+73581872 | None:intergenic |
| CAGGATGTATCTAGAGGAAT+AGG | 0.310364 | 1_4:-73587425 | Msa0184260:CDS |
| CTCTATGACCTGAGACAAAC+AGG | 0.330842 | 1_4:-73583509 | Msa0184260:CDS |
| TGGCTTTAGGGTATGATTGC+AGG | 0.351457 | 1_4:+73582019 | None:intergenic |
| GCCACTCATAGCTGTCTTTG+AGG | 0.377672 | 1_4:-73587378 | Msa0184260:CDS |
| ATTTGTAGCCTATAATTCAT+AGG | 0.385610 | 1_4:-73581942 | Msa0184260:three_prime_UTR |
| GTCTATTTGATGCAAATGAT+TGG | 0.395529 | 1_4:-73582118 | Msa0184260:three_prime_UTR |
| TTAAAGACAAGCTTACTTGC+GGG | 0.410464 | 1_4:+73581806 | None:intergenic |
| AAGAAGGGTTATGATGGTTA+TGG | 0.412803 | 1_4:+73587609 | Msa0184270:intron |
| AGGATGTATCTAGAGGAATA+GGG | 0.424974 | 1_4:-73587424 | Msa0184260:CDS |
| GAACAAAAGCATACAATCAT+TGG | 0.430568 | 1_4:+73581894 | None:intergenic |
| GCACTATTTCAAACCCCAAA+TGG | 0.446613 | 1_4:-73584078 | Msa0184260:CDS |
| GTAAAATCAGCAAAGAAGAT+TGG | 0.453764 | 1_4:-73582811 | Msa0184260:CDS |
| CAATAAACCCTGTTTGTCTC+AGG | 0.457501 | 1_4:+73583501 | None:intergenic |
| TTGGTTTCAGGTGAAGCAAA+TGG | 0.479980 | 1_4:-73583008 | Msa0184260:intron |
| TTGTTATTTGATAATGATGA+TGG | 0.481087 | 1_4:-73587031 | Msa0184260:intron |
| AAACACCTACAGCATATTGT+TGG | 0.483900 | 1_4:+73587055 | None:intergenic |
| TAGGCTACAAATATTTCTGT+TGG | 0.488335 | 1_4:+73581953 | None:intergenic |
| ACATACAAAACATGAAAACT+TGG | 0.489189 | 1_4:+73581996 | None:intergenic |
| AATTGGTGATGATGATAAGA+AGG | 0.490633 | 1_4:+73587593 | Msa0184270:intron |
| TTTCACTAAAATTAAAGTGT+GGG | 0.502088 | 1_4:-73581709 | Msa0184260:three_prime_UTR |
| CATCCATTGGGGCATAAGGA+TGG | 0.505415 | 1_4:+73583649 | None:intergenic |
| TACATCTGGTTTCTTGAGCA+AGG | 0.512152 | 1_4:+73587264 | None:intergenic |
| TTTCCATCCTTATGCCCCAA+TGG | 0.516605 | 1_4:-73583652 | Msa0184260:CDS |
| AGTAGCTCTGTAATTGATGA+TGG | 0.519726 | 1_4:-73584245 | Msa0184260:CDS |
| TTTGATGCAAATGATTGGAT+TGG | 0.520524 | 1_4:-73582113 | Msa0184260:three_prime_UTR |
| ATTTCACTAAAATTAAAGTG+TGG | 0.529768 | 1_4:-73581710 | Msa0184260:three_prime_UTR |
| ACTACTGAACTCACTTCCTC+TGG | 0.532385 | 1_4:+73583476 | None:intergenic |
| TACAAAACATGAAAACTTGG+TGG | 0.533813 | 1_4:+73581999 | None:intergenic |
| GTCATGTTCTTCAAGAGAGA+CGG | 0.538874 | 1_4:+73582767 | None:intergenic |
| TAAATAAAGTTAAATACACT+TGG | 0.562418 | 1_4:+73581778 | None:intergenic |
| TCTTGAAGCTATTGTTGACA+AGG | 0.562525 | 1_4:-73582939 | Msa0184260:intron |
| GCTGTAAATGGTAACAACAT+TGG | 0.565233 | 1_4:-73582085 | Msa0184260:three_prime_UTR |
| GATGATAAGAAGGGTTATGA+TGG | 0.576539 | 1_4:+73587603 | Msa0184270:intron |
| ATTGGTGATGATGATAAGAA+GGG | 0.577485 | 1_4:+73587594 | Msa0184270:intron |
| TACAGGGGAATGAGTAGGCA+TGG | 0.577752 | 1_4:+73587541 | Msa0184270:intron |
| TCTGATTTGAAAATAAAACT+AGG | 0.584623 | 1_4:+73582171 | None:intergenic |
| AATTTGCTGACAAACAATCA+TGG | 0.588998 | 1_4:-73582061 | Msa0184260:three_prime_UTR |
| AAAGTTACAGGGGAATGAGT+AGG | 0.590893 | 1_4:+73587536 | Msa0184270:intron |
| CTTAAAGACAAGCTTACTTG+CGG | 0.597953 | 1_4:+73581805 | None:intergenic |
| ATCACCAATTTCGATCATAG+AGG | 0.600338 | 1_4:-73587580 | Msa0184260:five_prime_UTR |
| GGATGTATCTAGAGGAATAG+GGG | 0.600419 | 1_4:-73587423 | Msa0184260:CDS |
| TATATCCAACAATATGCTGT+AGG | 0.601683 | 1_4:-73587060 | Msa0184260:CDS |
| ATTCCACAGGATGTATCTAG+AGG | 0.601973 | 1_4:-73587431 | Msa0184260:intron |
| AAACATAATCTACATAGGAA+AGG | 0.604565 | 1_4:-73587687 | Msa0184260:five_prime_UTR |
| AACAGAAACATAATCTACAT+AGG | 0.605114 | 1_4:-73587692 | Msa0184260:five_prime_UTR |
| GATGGAAAACACTGAGCGCG+TGG | 0.605651 | 1_4:+73583667 | None:intergenic |
| GACGTTGATCAAGACAATGA+TGG | 0.607782 | 1_4:-73582833 | Msa0184260:CDS |
| AACAGGGTTTATTGAGCCAG+AGG | 0.608476 | 1_4:-73583492 | Msa0184260:CDS |
| ATCATTGTCTTGATCAACGT+CGG | 0.634735 | 1_4:+73582835 | None:intergenic |
| TGATGATGGCTTGATTCACA+AGG | 0.635403 | 1_4:-73584231 | Msa0184260:intron |
| ACCTCAAAGACAGCTATGAG+TGG | 0.672289 | 1_4:+73587377 | None:intergenic |
| AATAAAACTAGGAAACGCAG+TGG | 0.710414 | 1_4:+73582182 | None:intergenic |
| TCTATGACCTGAGACAAACA+GGG | 0.757678 | 1_4:-73583508 | Msa0184260:CDS |
| TTCACTTGAAGATGTCACTG+CGG | 0.763080 | 1_4:+73581852 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGAAAATGTAATAGAAA+TGG | + | chr1_4:73584754-73584773 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTCTTTCAATTGT+AGG | - | chr1_4:73585288-73585307 | Msa0184260:intron | 15.0% |
| !!! | ATTTTTGATGAAAAAAGAAA+CGG | - | chr1_4:73585689-73585708 | Msa0184260:intron | 15.0% |
| !!! | TAAAATTTTAAAGACTTTAG+AGG | + | chr1_4:73587164-73587183 | None:intergenic | 15.0% |
| !! | TAAATAAAGTTAAATACACT+TGG | + | chr1_4:73587628-73587647 | Msa0184270:intron | 15.0% |
| !! | AATGAATTAGAAAAATGAGT+AGG | + | chr1_4:73581900-73581919 | None:intergenic | 20.0% |
| !! | AAAGTGGAAAATAATTGAAA+TGG | + | chr1_4:73582201-73582220 | None:intergenic | 20.0% |
| !!! | ATTTCAATTATTTTCCACTT+TGG | - | chr1_4:73582200-73582219 | Msa0184260:intron | 20.0% |
| !!! | TTGTTATTTGATAATGATGA+TGG | - | chr1_4:73582372-73582391 | Msa0184260:intron | 20.0% |
| !! | AACAATAACAAATTGTTCAA+CGG | + | chr1_4:73583781-73583800 | None:intergenic | 20.0% |
| !! | TGTAAGAATAAGAAAAACAA+AGG | + | chr1_4:73583905-73583924 | None:intergenic | 20.0% |
| !!! | AGAAAACTGATTTTGTTTTA+TGG | - | chr1_4:73583925-73583944 | Msa0184260:intron | 20.0% |
| !! | TATAATCTATTTGAAGATTC+TGG | + | chr1_4:73584007-73584026 | None:intergenic | 20.0% |
| !!! | ATAATTTCTGGTTCTATTAT+CGG | + | chr1_4:73584198-73584217 | None:intergenic | 20.0% |
| !!! | TCTATTACATTTTCAAAACT+AGG | - | chr1_4:73584756-73584775 | Msa0184260:intron | 20.0% |
| !!! | TTAAGTTTGTTAGTTTAGTT+AGG | + | chr1_4:73584876-73584895 | None:intergenic | 20.0% |
| !! | TATCATTAGAGATATATTGT+TGG | + | chr1_4:73584942-73584961 | None:intergenic | 20.0% |
| !! | TACAATTTCATCTACAATAT+AGG | + | chr1_4:73585423-73585442 | None:intergenic | 20.0% |
| !! | TAGATGAAATTGTATTGTAA+TGG | - | chr1_4:73585429-73585448 | Msa0184260:intron | 20.0% |
| !! | GTATATTTGAACATAAATCA+TGG | + | chr1_4:73586122-73586141 | None:intergenic | 20.0% |
| !! | AAATATACACTTGAAAATTG+TGG | - | chr1_4:73586134-73586153 | Msa0184260:intron | 20.0% |
| !! | ATTGGTTAATGAAAATAACA+AGG | + | chr1_4:73586219-73586238 | None:intergenic | 20.0% |
| !!! | TTATTTTCATTAACCAATCA+CGG | - | chr1_4:73586221-73586240 | Msa0184260:intron | 20.0% |
| !!! | TCAAAATTGTTGTTGAAATT+TGG | - | chr1_4:73586280-73586299 | Msa0184260:intron | 20.0% |
| !!! | TATTAAGTGTTTGATTTACT+TGG | - | chr1_4:73586376-73586395 | Msa0184260:intron | 20.0% |
| !!! | ATTTTTGCATACTTCAAATA+AGG | + | chr1_4:73586666-73586685 | None:intergenic | 20.0% |
| !! | TATCAATGATTGATATTGTA+TGG | - | chr1_4:73587052-73587071 | Msa0184260:CDS | 20.0% |
| !! | TATATTGAAATGTTAACCAT+TGG | - | chr1_4:73587096-73587115 | Msa0184260:intron | 20.0% |
| !!! | TCTGATTTGAAAATAAAACT+AGG | + | chr1_4:73587235-73587254 | None:intergenic | 20.0% |
| !!! | TAGTTTTATTTTCAAATCAG+AGG | - | chr1_4:73587234-73587253 | Msa0184260:intron | 20.0% |
| !! | TAATCAAACCTATGAATTAT+AGG | + | chr1_4:73587472-73587491 | None:intergenic | 20.0% |
| !! | ATTTCACTAAAATTAAAGTG+TGG | - | chr1_4:73587693-73587712 | Msa0184260:five_prime_UTR | 20.0% |
| !! | TTTCACTAAAATTAAAGTGT+GGG | - | chr1_4:73587694-73587713 | Msa0184260:five_prime_UTR | 20.0% |
| !! | GTAGATTATGTTTCTGTTTA+TGG | + | chr1_4:73581709-73581728 | None:intergenic | 25.0% |
| ! | AACAGAAACATAATCTACAT+AGG | - | chr1_4:73581711-73581730 | Msa0184260:three_prime_UTR | 25.0% |
| ! | AAACATAATCTACATAGGAA+AGG | - | chr1_4:73581716-73581735 | Msa0184260:three_prime_UTR | 25.0% |
| ! | AATTAGAAAAATGAGTAGGT+AGG | + | chr1_4:73581896-73581915 | None:intergenic | 25.0% |
| !!! | GATTTTTGAGTGTGAAAATT+GGG | + | chr1_4:73582092-73582111 | None:intergenic | 25.0% |
| !!! | AGATTTTTGAGTGTGAAAAT+TGG | + | chr1_4:73582093-73582112 | None:intergenic | 25.0% |
| ! | AATGGAAATCATTGAATGAA+GGG | + | chr1_4:73582183-73582202 | None:intergenic | 25.0% |
| ! | AAATGGAAATCATTGAATGA+AGG | + | chr1_4:73582184-73582203 | None:intergenic | 25.0% |
| !! | TTTTACTGAGGATGAAAAAA+TGG | + | chr1_4:73582262-73582281 | None:intergenic | 25.0% |
| !! | CATTGTTTACTATTTTACTG+AGG | + | chr1_4:73582274-73582293 | None:intergenic | 25.0% |
| ! | CTCAGTAAAATAGTAAACAA+TGG | - | chr1_4:73582272-73582291 | Msa0184260:intron | 25.0% |
| !! | TGTTTAAAACTTTATGCAAG+TGG | - | chr1_4:73582517-73582536 | Msa0184260:intron | 25.0% |
| !! | GTTTAAAACTTTATGCAAGT+GGG | - | chr1_4:73582518-73582537 | Msa0184260:intron | 25.0% |
| !! | TTTAAAACTTTATGCAAGTG+GGG | - | chr1_4:73582519-73582538 | Msa0184260:intron | 25.0% |
| !! | TCCCAAAATTACATTTTAGA+GGG | - | chr1_4:73582678-73582697 | Msa0184260:intron | 25.0% |
| !!! | CTTGTCCTATAGTTTTATAT+GGG | - | chr1_4:73582783-73582802 | Msa0184260:CDS | 25.0% |
| ! | TGACATTCATTATAATGTTG+AGG | - | chr1_4:73583743-73583762 | Msa0184260:intron | 25.0% |
| ! | GACATTCATTATAATGTTGA+GGG | - | chr1_4:73583744-73583763 | Msa0184260:intron | 25.0% |
| !! | TGGTAACTAACTTTAAGAAA+TGG | + | chr1_4:73583987-73584006 | None:intergenic | 25.0% |
| ! | TCAAATTATAGAGAATTGCT+TGG | + | chr1_4:73584127-73584146 | None:intergenic | 25.0% |
| !!! | TTGAAACTTAGAAGTATCAT+TGG | + | chr1_4:73584650-73584669 | None:intergenic | 25.0% |
| ! | AAATAAATCAGTGACAGAAA+TGG | + | chr1_4:73584695-73584714 | None:intergenic | 25.0% |
| !! | TTACATTTTCAAAACTAGGT+CGG | - | chr1_4:73584760-73584779 | Msa0184260:intron | 25.0% |
| ! | ACTTTGATTAACAAAAGCTT+TGG | - | chr1_4:73584990-73585009 | Msa0184260:intron | 25.0% |
| !!! | AAAGCTTTGGTTTGAATAAT+TGG | - | chr1_4:73585003-73585022 | Msa0184260:intron | 25.0% |
| ! | ACTTTGATTAACAAAAGCTT+TGG | - | chr1_4:73584990-73585009 | Msa0184260:intron | 25.0% |
| !!! | AAAGCTTTGGTTTGAATAAT+TGG | - | chr1_4:73585003-73585022 | Msa0184260:intron | 25.0% |
| !!! | TTTTTTCTTTCAATTGTAGG+TGG | - | chr1_4:73585291-73585310 | Msa0184260:intron | 25.0% |
| !! | AAAAAGATTTTCTCCATTTG+GGG | + | chr1_4:73585341-73585360 | None:intergenic | 25.0% |
| !! | GAAAAAGATTTTCTCCATTT+GGG | + | chr1_4:73585342-73585361 | None:intergenic | 25.0% |
| !! | AGAAAAAGATTTTCTCCATT+TGG | + | chr1_4:73585343-73585362 | None:intergenic | 25.0% |
| !! | AAATGGAGAAAATCTTTTTC+TGG | - | chr1_4:73585342-73585361 | Msa0184260:intron | 25.0% |
| ! | GCATTATAATATGCTTTGAT+CGG | - | chr1_4:73585547-73585566 | Msa0184260:intron | 25.0% |
| ! | TTAACACATTAGTACATTCA+TGG | + | chr1_4:73585640-73585659 | None:intergenic | 25.0% |
| ! | AAATTCCATGTTTCTTCTAT+AGG | - | chr1_4:73585658-73585677 | Msa0184260:intron | 25.0% |
| ! | AAAAACCTATAGAAGAAACA+TGG | + | chr1_4:73585666-73585685 | None:intergenic | 25.0% |
| !!! | AGTCTATTTTTTCATCCATT+GGG | + | chr1_4:73585769-73585788 | None:intergenic | 25.0% |
| ! | AACTGCAAAATTATCATCAT+GGG | + | chr1_4:73585865-73585884 | None:intergenic | 25.0% |
| ! | AGGTTAAGGAATATAATTTC+AGG | - | chr1_4:73586025-73586044 | Msa0184260:intron | 25.0% |
| ! | CACACAATTTAGACAATTAA+TGG | + | chr1_4:73586076-73586095 | None:intergenic | 25.0% |
| !!! | AATGGTTATAGCTATTTTGA+TGG | - | chr1_4:73586413-73586432 | Msa0184260:intron | 25.0% |
| ! | CAATGAGTTATATTGTTTAC+AGG | - | chr1_4:73586519-73586538 | Msa0184260:intron | 25.0% |
| ! | ATAAGTGTTTATGCTATAAG+CGG | + | chr1_4:73586768-73586787 | None:intergenic | 25.0% |
| ! | TCAGAATAGCTTATGAAAAT+AGG | + | chr1_4:73586867-73586886 | None:intergenic | 25.0% |
| ! | AAATAAGCCGAAACAATTTA+TGG | - | chr1_4:73586898-73586917 | Msa0184260:intron | 25.0% |
| ! | ACATACAAAACATGAAAACT+TGG | + | chr1_4:73587410-73587429 | None:intergenic | 25.0% |
| !! | TTCATGTTTTGTATGTTTGA+AGG | - | chr1_4:73587414-73587433 | Msa0184260:CDS | 25.0% |
| ! | ATTTGTAGCCTATAATTCAT+AGG | - | chr1_4:73587461-73587480 | Msa0184260:intron | 25.0% |
| !! | ATTGGTGATGATGATAAGAA+GGG | + | chr1_4:73581812-73581831 | None:intergenic | 30.0% |
| !! | AATTGGTGATGATGATAAGA+AGG | + | chr1_4:73581813-73581832 | None:intergenic | 30.0% |
| TAGGTAGGTAAAAAGTTACA+GGG | + | chr1_4:73581881-73581900 | None:intergenic | 30.0% | |
| ATGAAATGAGTAGTTACATC+TGG | + | chr1_4:73582156-73582175 | None:intergenic | 30.0% | |
| ATGGAAATCATTGAATGAAG+GGG | + | chr1_4:73582182-73582201 | None:intergenic | 30.0% | |
| GTAAAATAGTAAACAATGGC+AGG | - | chr1_4:73582276-73582295 | Msa0184260:intron | 30.0% | |
| TATATCCAACAATATGCTGT+AGG | - | chr1_4:73582343-73582362 | Msa0184260:intron | 30.0% | |
| !! | ATAATGATGATGGTATGTAC+AGG | - | chr1_4:73582382-73582401 | Msa0184260:intron | 30.0% |
| ACCATAATAATTGATCACGT+TGG | - | chr1_4:73582427-73582446 | Msa0184260:intron | 30.0% | |
| TCCAACGTGATCAATTATTA+TGG | + | chr1_4:73582431-73582450 | None:intergenic | 30.0% | |
| TTAATAGACCATATCAAAGC+TGG | + | chr1_4:73582552-73582571 | None:intergenic | 30.0% | |
| TACAATAAAGTTGAGCAGTT+AGG | + | chr1_4:73582580-73582599 | None:intergenic | 30.0% | |
| ! | CTCCCAAAATTACATTTTAG+AGG | - | chr1_4:73582677-73582696 | Msa0184260:intron | 30.0% |
| !!! | CCCCTCTAAAATGTAATTTT+GGG | + | chr1_4:73582682-73582701 | None:intergenic | 30.0% |
| !! | CCCAAAATTACATTTTAGAG+GGG | - | chr1_4:73582679-73582698 | Msa0184260:intron | 30.0% |
| !!! | ACCCCTCTAAAATGTAATTT+TGG | + | chr1_4:73582683-73582702 | None:intergenic | 30.0% |
| TAGAAATCAAGGCCTTTAAA+GGG | + | chr1_4:73582761-73582780 | None:intergenic | 30.0% | |
| TTAGAAATCAAGGCCTTTAA+AGG | + | chr1_4:73582762-73582781 | None:intergenic | 30.0% | |
| !!! | GCTTGTCCTATAGTTTTATA+TGG | - | chr1_4:73582782-73582801 | Msa0184260:CDS | 30.0% |
| !!! | TCCTATAGTTTTATATGGGA+TGG | - | chr1_4:73582787-73582806 | Msa0184260:CDS | 30.0% |
| TCCATCCCATATAAAACTAT+AGG | + | chr1_4:73582791-73582810 | None:intergenic | 30.0% | |
| GAAAAGAGGTTATATCATGT+GGG | + | chr1_4:73582873-73582892 | None:intergenic | 30.0% | |
| AGGGTTATATTGTATATTGC+TGG | + | chr1_4:73582912-73582931 | None:intergenic | 30.0% | |
| ACAATATAACCCTTGTCTTT+AGG | - | chr1_4:73582919-73582938 | Msa0184260:intron | 30.0% | |
| AATCGAAGAAGAGATTTAAC+GGG | + | chr1_4:73583063-73583082 | None:intergenic | 30.0% | |
| GAATCGAAGAAGAGATTTAA+CGG | + | chr1_4:73583064-73583083 | None:intergenic | 30.0% | |
| TTAAATCTCTTCTTCGATTC+AGG | - | chr1_4:73583064-73583083 | Msa0184260:intron | 30.0% | |
| TGTTGTCCAAATGATAGTAA+GGG | + | chr1_4:73583305-73583324 | None:intergenic | 30.0% | |
| TTGTTGTCCAAATGATAGTA+AGG | + | chr1_4:73583306-73583325 | None:intergenic | 30.0% | |
| CAATTCAACTGACACTTATA+AGG | - | chr1_4:73583536-73583555 | Msa0184260:intron | 30.0% | |
| ATTGTGAGAATTCTAAGTGT+GGG | - | chr1_4:73583597-73583616 | Msa0184260:intron | 30.0% | |
| TGTTATTGTTTCACTTGATC+TGG | - | chr1_4:73583791-73583810 | Msa0184260:intron | 30.0% | |
| GTTATTGTTTCACTTGATCT+GGG | - | chr1_4:73583792-73583811 | Msa0184260:intron | 30.0% | |
| AACCAGAAATTATATACGCT+GGG | - | chr1_4:73584205-73584224 | Msa0184260:intron | 30.0% | |
| ! | AATTCAGAAAAAAGTGCACT+TGG | + | chr1_4:73584598-73584617 | None:intergenic | 30.0% |
| ! | ATTTCGTTTTCCTCTTCTTT+TGG | - | chr1_4:73584615-73584634 | Msa0184260:intron | 30.0% |
| TCACAAGGTAAGATCATATT+TGG | - | chr1_4:73585187-73585206 | Msa0184260:intron | 30.0% | |
| ! | TGAATGCAAGTTTTTCACAT+AGG | - | chr1_4:73585220-73585239 | Msa0184260:intron | 30.0% |
| ! | GAATGCAAGTTTTTCACATA+GGG | - | chr1_4:73585221-73585240 | Msa0184260:intron | 30.0% |
| !!! | GTTCCTATATTTTTTAGCCA+TGG | - | chr1_4:73585377-73585396 | Msa0184260:intron | 30.0% |
| ATGCCATGGCTAAAAAATAT+AGG | + | chr1_4:73585383-73585402 | None:intergenic | 30.0% | |
| TAACATGAAGAAATATGCCA+TGG | + | chr1_4:73585397-73585416 | None:intergenic | 30.0% | |
| !!! | GTCTATTTTTTCATCCATTG+GGG | + | chr1_4:73585768-73585787 | None:intergenic | 30.0% |
| !!! | CAGTCTATTTTTTCATCCAT+TGG | + | chr1_4:73585770-73585789 | None:intergenic | 30.0% |
| CAACTGCAAAATTATCATCA+TGG | + | chr1_4:73585866-73585885 | None:intergenic | 30.0% | |
| !! | GGTTAATTTTGGCAAGTATA+AGG | - | chr1_4:73586005-73586024 | Msa0184260:intron | 30.0% |
| ! | TTTTGGCAAGTATAAGGTTA+AGG | - | chr1_4:73586011-73586030 | Msa0184260:intron | 30.0% |
| ! | CTGTGTTTAATTGTGTTGAT+TGG | - | chr1_4:73586173-73586192 | Msa0184260:intron | 30.0% |
| ! | TGTTTGATTTACTTGGTTTC+AGG | - | chr1_4:73586383-73586402 | Msa0184260:intron | 30.0% |
| GTAAAATCAGCAAAGAAGAT+TGG | - | chr1_4:73586592-73586611 | Msa0184260:intron | 30.0% | |
| TGACATGCCATAAATTGTTT+CGG | + | chr1_4:73586908-73586927 | None:intergenic | 30.0% | |
| TCAGTAGAAAAGCTCAAATA+AGG | - | chr1_4:73586976-73586995 | Msa0184260:intron | 30.0% | |
| TAATGAAGTGAGAAAACCAA+TGG | + | chr1_4:73587115-73587134 | None:intergenic | 30.0% | |
| !! | TTTATTTTCAAATCAGAGGC+TGG | - | chr1_4:73587238-73587257 | Msa0184260:intron | 30.0% |
| GTCTATTTGATGCAAATGAT+TGG | - | chr1_4:73587285-73587304 | Msa0184260:CDS | 30.0% | |
| TTTGATGCAAATGATTGGAT+TGG | - | chr1_4:73587290-73587309 | Msa0184260:CDS | 30.0% | |
| !! | AATTTGCTGACAAACAATCA+TGG | - | chr1_4:73587342-73587361 | Msa0184260:CDS | 30.0% |
| TACAAAACATGAAAACTTGG+TGG | + | chr1_4:73587407-73587426 | None:intergenic | 30.0% | |
| ! | TAGGCTACAAATATTTCTGT+TGG | + | chr1_4:73587453-73587472 | None:intergenic | 30.0% |
| ! | GAACAAAAGCATACAATCAT+TGG | + | chr1_4:73587512-73587531 | None:intergenic | 30.0% |
| AAGAAGGGTTATGATGGTTA+TGG | + | chr1_4:73581797-73581816 | None:intergenic | 35.0% | |
| GATGATAAGAAGGGTTATGA+TGG | + | chr1_4:73581803-73581822 | None:intergenic | 35.0% | |
| ATCACCAATTTCGATCATAG+AGG | - | chr1_4:73581823-73581842 | Msa0184260:three_prime_UTR | 35.0% | |
| AGGTAGGTAAAAAGTTACAG+GGG | + | chr1_4:73581880-73581899 | None:intergenic | 35.0% | |
| GTAGGTAGGTAAAAAGTTAC+AGG | + | chr1_4:73581882-73581901 | None:intergenic | 35.0% | |
| !!! | TGCATGTTTTTTGATTCCAC+AGG | - | chr1_4:73581959-73581978 | Msa0184260:three_prime_UTR | 35.0% |
| AGGATGTATCTAGAGGAATA+GGG | - | chr1_4:73581979-73581998 | Msa0184260:three_prime_UTR | 35.0% | |
| TGGAAATCATTGAATGAAGG+GGG | + | chr1_4:73582181-73582200 | None:intergenic | 35.0% | |
| !! | TTGTATTGATTGAGCCAAAG+TGG | + | chr1_4:73582217-73582236 | None:intergenic | 35.0% |
| AAACACCTACAGCATATTGT+TGG | + | chr1_4:73582351-73582370 | None:intergenic | 35.0% | |
| GAGTTAATGTACCCCTTTAA+AGG | - | chr1_4:73582746-73582765 | Msa0184260:intron | 35.0% | |
| ! | AGAAATCAAGGCCTTTAAAG+GGG | + | chr1_4:73582760-73582779 | None:intergenic | 35.0% |
| TAGGACAAGCTTAGAAATCA+AGG | + | chr1_4:73582772-73582791 | None:intergenic | 35.0% | |
| GGAAAAGAGGTTATATCATG+TGG | + | chr1_4:73582874-73582893 | None:intergenic | 35.0% | |
| TGGTTGAAACCTAAAGACAA+GGG | + | chr1_4:73582931-73582950 | None:intergenic | 35.0% | |
| ATCGAAGAAGAGATTTAACG+GGG | + | chr1_4:73583062-73583081 | None:intergenic | 35.0% | |
| ACTAAGGTGTAGTTTCACAA+AGG | + | chr1_4:73583130-73583149 | None:intergenic | 35.0% | |
| ATTCTCAATTAAATGGCGCA+TGG | + | chr1_4:73583259-73583278 | None:intergenic | 35.0% | |
| ATGCCGGATTCTCAATTAAA+TGG | + | chr1_4:73583266-73583285 | None:intergenic | 35.0% | |
| TGATAGCTGAAAGTTTCAAG+TGG | + | chr1_4:73583486-73583505 | None:intergenic | 35.0% | |
| CTTGAAACTTTCAGCTATCA+TGG | - | chr1_4:73583486-73583505 | Msa0184260:intron | 35.0% | |
| ! | GGCAATTTCAACTTCAAGTT+TGG | - | chr1_4:73583507-73583526 | Msa0184260:CDS | 35.0% |
| TTCAACTGACACTTATAAGG+TGG | - | chr1_4:73583539-73583558 | Msa0184260:intron | 35.0% | |
| CATTGTGAGAATTCTAAGTG+TGG | - | chr1_4:73583596-73583615 | Msa0184260:intron | 35.0% | |
| TCCTATTGTTCCTCTTCATT+TGG | - | chr1_4:73583650-73583669 | Msa0184260:CDS | 35.0% | |
| TCCAAATGAAGAGGAACAAT+AGG | + | chr1_4:73583654-73583673 | None:intergenic | 35.0% | |
| TTCCTCTTCATTTGGACTTT+GGG | - | chr1_4:73583658-73583677 | Msa0184260:CDS | 35.0% | |
| ! | TGGACTTTGGGGAATATTAT+TGG | - | chr1_4:73583670-73583689 | Msa0184260:CDS | 35.0% |
| TGGGGAATATTATTGGAATG+CGG | - | chr1_4:73583677-73583696 | Msa0184260:CDS | 35.0% | |
| TATGGCAGATGATGAAATTC+AGG | - | chr1_4:73583943-73583962 | Msa0184260:intron | 35.0% | |
| ATGGCAGATGATGAAATTCA+GGG | - | chr1_4:73583944-73583963 | Msa0184260:intron | 35.0% | |
| GAACCAGAAATTATATACGC+TGG | - | chr1_4:73584204-73584223 | Msa0184260:intron | 35.0% | |
| AACCCAGCGTATATAATTTC+TGG | + | chr1_4:73584210-73584229 | None:intergenic | 35.0% | |
| TAAACTTTCAACGTAAACCC+TGG | + | chr1_4:73584237-73584256 | None:intergenic | 35.0% | |
| CTTGAGGATAAGGTTTCAAA+AGG | + | chr1_4:73584267-73584286 | None:intergenic | 35.0% | |
| !!! | CTTTTGAAACCTTATCCTCA+AGG | - | chr1_4:73584265-73584284 | Msa0184260:CDS | 35.0% |
| ! | CCTTCTTTTATGAGTGATAG+TGG | + | chr1_4:73584492-73584511 | None:intergenic | 35.0% |
| CCACTATCACTCATAAAAGA+AGG | - | chr1_4:73584489-73584508 | Msa0184260:intron | 35.0% | |
| AATGAAAACTCAAGTCCACA+AGG | + | chr1_4:73584538-73584557 | None:intergenic | 35.0% | |
| !!! | TTTTCCTCTTCTTTTGGTTC+TGG | - | chr1_4:73584621-73584640 | Msa0184260:intron | 35.0% |
| ! | TGCACAACTTTTGTATGACA+AGG | - | chr1_4:73584722-73584741 | Msa0184260:intron | 35.0% |
| ! | GCACAACTTTTGTATGACAA+GGG | - | chr1_4:73584723-73584742 | Msa0184260:intron | 35.0% |
| ! | CACAACTTTTGTATGACAAG+GGG | - | chr1_4:73584724-73584743 | Msa0184260:intron | 35.0% |
| ! | ACAACTTTTGTATGACAAGG+GGG | - | chr1_4:73584725-73584744 | Msa0184260:intron | 35.0% |
| GGAGTTATGTAGTTACAAGT+TGG | + | chr1_4:73584921-73584940 | None:intergenic | 35.0% | |
| ! | AGTAGCTCTGTAATTGATGA+TGG | - | chr1_4:73585158-73585177 | Msa0184260:intron | 35.0% |
| !!! | CAAAACAGTTGCTGATTTTG+AGG | - | chr1_4:73585506-73585525 | Msa0184260:intron | 35.0% |
| CATCATTGGAAGAATCACAA+TGG | + | chr1_4:73585617-73585636 | None:intergenic | 35.0% | |
| TAGTACATTCATGGCATCAT+TGG | + | chr1_4:73585631-73585650 | None:intergenic | 35.0% | |
| ! | TTCAGTTGAAGACAGTCTTT+TGG | - | chr1_4:73585794-73585813 | Msa0184260:intron | 35.0% |
| ACATCAAATTTCGACAACAG+TGG | - | chr1_4:73585984-73586003 | Msa0184260:intron | 35.0% | |
| ! | TCGACAACAGTGGTTAATTT+TGG | - | chr1_4:73585994-73586013 | Msa0184260:intron | 35.0% |
| AGTTAATTACGTTCCGTGAT+TGG | + | chr1_4:73586237-73586256 | None:intergenic | 35.0% | |
| TTATAATGCCTAAAGCGATG+CGG | + | chr1_4:73586346-73586365 | None:intergenic | 35.0% | |
| TCTTGAAGCTATTGTTGACA+AGG | - | chr1_4:73586464-73586483 | Msa0184260:intron | 35.0% | |
| ATCATTGTCTTGATCAACGT+CGG | + | chr1_4:73586571-73586590 | None:intergenic | 35.0% | |
| TGTATGCGAATTGTTCACTT+TGG | + | chr1_4:73586720-73586739 | None:intergenic | 35.0% | |
| ACAATTCGCATACAAACTTG+TGG | - | chr1_4:73586726-73586745 | Msa0184260:intron | 35.0% | |
| ! | GGTTTTCTCACTTCATTAAG+AGG | - | chr1_4:73587117-73587136 | Msa0184260:intron | 35.0% |
| AATAAAACTAGGAAACGCAG+TGG | + | chr1_4:73587224-73587243 | None:intergenic | 35.0% | |
| !! | GGATTGGTTATTGCTGTAAA+TGG | - | chr1_4:73587306-73587325 | Msa0184260:CDS | 35.0% |
| GCTGTAAATGGTAACAACAT+TGG | - | chr1_4:73587318-73587337 | Msa0184260:CDS | 35.0% | |
| ! | ATGAAAACTTGGTGGCTTTA+GGG | + | chr1_4:73587399-73587418 | None:intergenic | 35.0% |
| CGGTCACTCTTTATGTATAA+TGG | + | chr1_4:73587534-73587553 | Msa0184270:intron | 35.0% | |
| TTAAAGACAAGCTTACTTGC+GGG | + | chr1_4:73587600-73587619 | Msa0184270:intron | 35.0% | |
| CTTAAAGACAAGCTTACTTG+CGG | + | chr1_4:73587601-73587620 | Msa0184270:intron | 35.0% | |
| CTAGCCTCTATGATCGAAAT+TGG | + | chr1_4:73581830-73581849 | None:intergenic | 40.0% | |
| AAAGTTACAGGGGAATGAGT+AGG | + | chr1_4:73581870-73581889 | None:intergenic | 40.0% | |
| ATTCCACAGGATGTATCTAG+AGG | - | chr1_4:73581972-73581991 | Msa0184260:three_prime_UTR | 40.0% | |
| ATTCCTCTAGATACATCCTG+TGG | + | chr1_4:73581978-73581997 | None:intergenic | 40.0% | |
| CAGGATGTATCTAGAGGAAT+AGG | - | chr1_4:73581978-73581997 | Msa0184260:three_prime_UTR | 40.0% | |
| GGATGTATCTAGAGGAATAG+GGG | - | chr1_4:73581980-73581999 | Msa0184260:three_prime_UTR | 40.0% | |
| !! | GTTTTTGTCTTTGCTGTCAC+AGG | - | chr1_4:73582047-73582066 | Msa0184260:three_prime_UTR | 40.0% |
| ! | TACATCTGGTTTCTTGAGCA+AGG | + | chr1_4:73582142-73582161 | None:intergenic | 40.0% |
| GGAAATCATTGAATGAAGGG+GGG | + | chr1_4:73582180-73582199 | None:intergenic | 40.0% | |
| ! | GTTTGAAGCCAGCTTTGATA+TGG | - | chr1_4:73582541-73582560 | Msa0184260:intron | 40.0% |
| ATATGGGATGGAAGCTGAAA+TGG | - | chr1_4:73582799-73582818 | Msa0184260:CDS | 40.0% | |
| CAAATCTGTTGTGGGAAAAG+AGG | + | chr1_4:73582887-73582906 | None:intergenic | 40.0% | |
| GTGGTTGAAACCTAAAGACA+AGG | + | chr1_4:73582932-73582951 | None:intergenic | 40.0% | |
| !! | TTTTCAATGCTGTGTCGTTG+TGG | + | chr1_4:73582951-73582970 | None:intergenic | 40.0% |
| GTTTCACAAAGGCTTGATCA+GGG | + | chr1_4:73583119-73583138 | None:intergenic | 40.0% | |
| AGTTTCACAAAGGCTTGATC+AGG | + | chr1_4:73583120-73583139 | None:intergenic | 40.0% | |
| ! | TTCGTGTTGCTGATCTACTA+AGG | + | chr1_4:73583146-73583165 | None:intergenic | 40.0% |
| ATTAAATGGCGCATGGAGTA+AGG | + | chr1_4:73583252-73583271 | None:intergenic | 40.0% | |
| GCGCCATTTAATTGAGAATC+CGG | - | chr1_4:73583260-73583279 | Msa0184260:intron | 40.0% | |
| ATAGTAAGGGTCGATGGAAA+AGG | + | chr1_4:73583292-73583311 | None:intergenic | 40.0% | |
| CAAATGATAGTAAGGGTCGA+TGG | + | chr1_4:73583298-73583317 | None:intergenic | 40.0% | |
| CATCGACCCTTACTATCATT+TGG | - | chr1_4:73583296-73583315 | Msa0184260:intron | 40.0% | |
| CAACAAAGATTGCTCTCGTA+TGG | - | chr1_4:73583320-73583339 | Msa0184260:intron | 40.0% | |
| AAAGATTGCTCTCGTATGGT+TGG | - | chr1_4:73583324-73583343 | Msa0184260:intron | 40.0% | |
| CCAGTACTCTCTATATGCAT+CGG | + | chr1_4:73583391-73583410 | None:intergenic | 40.0% | |
| !! | GAGAGTACTGGTTTCGTTTA+TGG | - | chr1_4:73583400-73583419 | Msa0184260:intron | 40.0% |
| AACTGACACTTATAAGGTGG+TGG | - | chr1_4:73583542-73583561 | Msa0184260:intron | 40.0% | |
| TCTGTTGATGTGGATGGTAA+CGG | + | chr1_4:73583572-73583591 | None:intergenic | 40.0% | |
| ACAATGCTTCTCTGTTGATG+TGG | + | chr1_4:73583582-73583601 | None:intergenic | 40.0% | |
| ! | TAAGTGTGGGTGATAACGTT+TGG | - | chr1_4:73583610-73583629 | Msa0184260:intron | 40.0% |
| GTTCCTCTTCATTTGGACTT+TGG | - | chr1_4:73583657-73583676 | Msa0184260:CDS | 40.0% | |
| TCCTCTTCATTTGGACTTTG+GGG | - | chr1_4:73583659-73583678 | Msa0184260:CDS | 40.0% | |
| AATGCGGATGTGTATTTGAG+TGG | - | chr1_4:73583693-73583712 | Msa0184260:CDS | 40.0% | |
| !!! | GATGAAGTATCGTTTTCCGT+TGG | - | chr1_4:73584043-73584062 | Msa0184260:intron | 40.0% |
| CTTATCCTCAAGGTTGAAGT+CGG | - | chr1_4:73584275-73584294 | Msa0184260:CDS | 40.0% | |
| TTATCCTCAAGGTTGAAGTC+GGG | - | chr1_4:73584276-73584295 | Msa0184260:CDS | 40.0% | |
| TCGAGCTTGAGGAAAAGAAA+AGG | - | chr1_4:73584368-73584387 | Msa0184260:intron | 40.0% | |
| !! | TGATGATGGCTTGATTCACA+AGG | - | chr1_4:73585172-73585191 | Msa0184260:intron | 40.0% |
| GCACTATTTCAAACCCCAAA+TGG | - | chr1_4:73585325-73585344 | Msa0184260:intron | 40.0% | |
| GAGGAACTAACATAGCGAAA+TGG | - | chr1_4:73585525-73585544 | Msa0184260:intron | 40.0% | |
| ! | TTTTCATCCATTGGGGCATA+AGG | + | chr1_4:73585761-73585780 | None:intergenic | 40.0% |
| TCTATGACCTGAGACAAACA+GGG | - | chr1_4:73585895-73585914 | Msa0184260:intron | 40.0% | |
| CAATAAACCCTGTTTGTCTC+AGG | + | chr1_4:73585905-73585924 | None:intergenic | 40.0% | |
| ! | TTGGTTTCAGGTGAAGCAAA+TGG | - | chr1_4:73586395-73586414 | Msa0184260:intron | 40.0% |
| ATTGTCTGCAGACAAAGTGA+AGG | + | chr1_4:73586546-73586565 | None:intergenic | 40.0% | |
| GACGTTGATCAAGACAATGA+TGG | - | chr1_4:73586570-73586589 | Msa0184260:intron | 40.0% | |
| GTCATGTTCTTCAAGAGAGA+CGG | + | chr1_4:73586639-73586658 | None:intergenic | 40.0% | |
| ! | AAGCTATTCTGAAGAGTGTG+TGG | - | chr1_4:73586875-73586894 | Msa0184260:intron | 40.0% |
| TCAAATAAGGCAATGCAGAC+AGG | - | chr1_4:73586989-73587008 | Msa0184260:intron | 40.0% | |
| !! | TGTCACTTTGTCATCTTCCA+GGG | - | chr1_4:73587192-73587211 | Msa0184260:intron | 40.0% |
| ! | CATGAAAACTTGGTGGCTTT+AGG | + | chr1_4:73587400-73587419 | None:intergenic | 40.0% |
| TTCACTTGAAGATGTCACTG+CGG | + | chr1_4:73587554-73587573 | Msa0184270:intron | 40.0% | |
| CGCAAGTAAGCTTGTCTTTA+AGG | - | chr1_4:73587599-73587618 | Msa0184260:five_prime_UTR | 40.0% | |
| ACCTCAAAGACAGCTATGAG+TGG | + | chr1_4:73582029-73582048 | None:intergenic | 45.0% | |
| TGCTGGTGCAAATCTGTTGT+GGG | + | chr1_4:73582895-73582914 | None:intergenic | 45.0% | |
| TTGCTGGTGCAAATCTGTTG+TGG | + | chr1_4:73582896-73582915 | None:intergenic | 45.0% | |
| GAGTCATAGACGCAACTGAT+TGG | + | chr1_4:73582987-73583006 | None:intergenic | 45.0% | |
| TCAGGTGTGTCAGTAAGTCT+TGG | - | chr1_4:73583082-73583101 | Msa0184260:intron | 45.0% | |
| TCGATGGAAAAGGTGAATGC+CGG | + | chr1_4:73583282-73583301 | None:intergenic | 45.0% | |
| ! | CCGATGCATATAGAGAGTAC+TGG | - | chr1_4:73583388-73583407 | Msa0184260:intron | 45.0% |
| GTTTATGGAACCCAGTAACC+AGG | - | chr1_4:73583415-73583434 | Msa0184260:intron | 45.0% | |
| CAGATGTTGTCCTGGTTACT+GGG | + | chr1_4:73583428-73583447 | None:intergenic | 45.0% | |
| AAATGTCGCAGATGTTGTCC+TGG | + | chr1_4:73583436-73583455 | None:intergenic | 45.0% | |
| AGGACAACATCTGCGACATT+TGG | - | chr1_4:73583435-73583454 | Msa0184260:intron | 45.0% | |
| CTGTTGATGTGGATGGTAAC+GGG | + | chr1_4:73583571-73583590 | None:intergenic | 45.0% | |
| TGCTTCTCTGTTGATGTGGA+TGG | + | chr1_4:73583578-73583597 | None:intergenic | 45.0% | |
| TCCCCAAAGTCCAAATGAAG+AGG | + | chr1_4:73583663-73583682 | None:intergenic | 45.0% | |
| ATTTGAGTGGCACACTGAAC+TGG | - | chr1_4:73583706-73583725 | Msa0184260:CDS | 45.0% | |
| !! | ACACCAACTGTTGGTTCAGT+AGG | + | chr1_4:73583870-73583889 | None:intergenic | 45.0% |
| ! | TGAACCAACAGTTGGTGTGT+TGG | - | chr1_4:73583872-73583891 | Msa0184260:intron | 45.0% |
| ! | GAACCAACAGTTGGTGTGTT+GGG | - | chr1_4:73583873-73583892 | Msa0184260:intron | 45.0% |
| ! | AACCAACAGTTGGTGTGTTG+GGG | - | chr1_4:73583874-73583893 | Msa0184260:intron | 45.0% |
| GCAGATGATGAAATTCAGGG+TGG | - | chr1_4:73583947-73583966 | Msa0184260:intron | 45.0% | |
| AATTCAGGGTGGAAGAGTCT+TGG | - | chr1_4:73583958-73583977 | Msa0184260:intron | 45.0% | |
| CCATCCTCAGAAAGAAGCAA+CGG | + | chr1_4:73584071-73584090 | None:intergenic | 45.0% | |
| ATATACGCTGGGTTTCAACC+AGG | - | chr1_4:73584216-73584235 | Msa0184260:intron | 45.0% | |
| TATACGCTGGGTTTCAACCA+GGG | - | chr1_4:73584217-73584236 | Msa0184260:intron | 45.0% | |
| CGACTTCAACCTTGAGGATA+AGG | + | chr1_4:73584277-73584296 | None:intergenic | 45.0% | |
| !! | AACAGTTGGTGAGGCAACTT+GGG | + | chr1_4:73584331-73584350 | None:intergenic | 45.0% |
| ! | ACAAGACAGAACAGTTGGTG+AGG | + | chr1_4:73584340-73584359 | None:intergenic | 45.0% |
| CAGTGACAAGACAGAACAGT+TGG | + | chr1_4:73584345-73584364 | None:intergenic | 45.0% | |
| TGTCACTGTATTCGAGCTTG+AGG | - | chr1_4:73584357-73584376 | Msa0184260:intron | 45.0% | |
| CTCTGATGTACACAACCTTG+TGG | - | chr1_4:73584520-73584539 | Msa0184260:intron | 45.0% | |
| GTGACCAGAACCAAAAGAAG+AGG | + | chr1_4:73584628-73584647 | None:intergenic | 45.0% | |
| TTTCCATCCTTATGCCCCAA+TGG | - | chr1_4:73585751-73585770 | Msa0184260:intron | 45.0% | |
| CTCTATGACCTGAGACAAAC+AGG | - | chr1_4:73585894-73585913 | Msa0184260:intron | 45.0% | |
| AACAGGGTTTATTGAGCCAG+AGG | - | chr1_4:73585911-73585930 | Msa0184260:intron | 45.0% | |
| ACTACTGAACTCACTTCCTC+TGG | + | chr1_4:73585930-73585949 | None:intergenic | 45.0% | |
| !! | GTGTCACTTTGTCATCTTCC+AGG | - | chr1_4:73587191-73587210 | Msa0184260:intron | 45.0% |
| !! | TGGCTTTAGGGTATGATTGC+AGG | + | chr1_4:73587387-73587406 | None:intergenic | 45.0% |
| !! | AAACAATAATAATAAATATA+AGG | + | chr1_4:73582502-73582521 | None:intergenic | 5.0% |
| TACAGGGGAATGAGTAGGCA+TGG | + | chr1_4:73581865-73581884 | None:intergenic | 50.0% | |
| GCCACTCATAGCTGTCTTTG+AGG | - | chr1_4:73582025-73582044 | Msa0184260:three_prime_UTR | 50.0% | |
| TGCGTCTATGACTCTATCGC+CGG | - | chr1_4:73582993-73583012 | Msa0184260:CDS | 50.0% | |
| ATATCGTCAGAGAGGACCAC+CGG | + | chr1_4:73583015-73583034 | None:intergenic | 50.0% | |
| CAGCGATGATATCGTCAGAG+AGG | + | chr1_4:73583023-73583042 | None:intergenic | 50.0% | |
| CTCTGACGATATCATCGCTG+AGG | - | chr1_4:73583023-73583042 | Msa0184260:intron | 50.0% | |
| CAAAGGCTTGATCAGGGATG+AGG | + | chr1_4:73583113-73583132 | None:intergenic | 50.0% | |
| CACATCACAGATCTCACACC+AGG | - | chr1_4:73583192-73583211 | Msa0184260:intron | 50.0% | |
| CGTATGGTTGGCACATGCAA+TGG | - | chr1_4:73583336-73583355 | Msa0184260:intron | 50.0% | |
| GCAGATGTTGTCCTGGTTAC+TGG | + | chr1_4:73583429-73583448 | None:intergenic | 50.0% | |
| ! | AATCAGTACTTGCTGCCTCG+TGG | - | chr1_4:73583828-73583847 | Msa0184260:intron | 50.0% |
| GGAACTTCCTCAAAACCACG+AGG | + | chr1_4:73583846-73583865 | None:intergenic | 50.0% | |
| !! | CCAACTGTTGGTTCAGTAGG+TGG | + | chr1_4:73583867-73583886 | None:intergenic | 50.0% |
| CCACCTACTGAACCAACAGT+TGG | - | chr1_4:73583864-73583883 | Msa0184260:intron | 50.0% | |
| ! | ACCAACAGTTGGTGTGTTGG+GGG | - | chr1_4:73583875-73583894 | Msa0184260:intron | 50.0% |
| GAAAGAAGCAACGGCACCAA+CGG | + | chr1_4:73584062-73584081 | None:intergenic | 50.0% | |
| ! | CCGTTGCTTCTTTCTGAGGA+TGG | - | chr1_4:73584068-73584087 | Msa0184260:CDS | 50.0% |
| GTTTCCCGACTTCAACCTTG+AGG | + | chr1_4:73584283-73584302 | None:intergenic | 50.0% | |
| GTCGGGAAACTGCTACTGAA+TGG | - | chr1_4:73584293-73584312 | Msa0184260:CDS | 50.0% | |
| !! | GAACAGTTGGTGAGGCAACT+TGG | + | chr1_4:73584332-73584351 | None:intergenic | 50.0% |
| CATCCATTGGGGCATAAGGA+TGG | + | chr1_4:73585757-73585776 | None:intergenic | 50.0% | |
| CACATAAGCCGCATCGCTTT+AGG | - | chr1_4:73586335-73586354 | Msa0184260:intron | 50.0% | |
| AAACGCAGTGGTGATATCCC+TGG | + | chr1_4:73587212-73587231 | None:intergenic | 50.0% | |
| GTCTATGACTCTATCGCCGG+TGG | - | chr1_4:73582996-73583015 | Msa0184260:CDS | 55.0% | |
| TGGCGCATGGAGTAAGGAAC+AGG | + | chr1_4:73583246-73583265 | None:intergenic | 55.0% | |
| !! | CTTGCTGCCTCGTGGTTTTG+AGG | - | chr1_4:73583836-73583855 | Msa0184260:intron | 55.0% |
| ! | CCAACAGTTGGTGTGTTGGG+GGG | - | chr1_4:73583876-73583895 | Msa0184260:intron | 55.0% |
| !! | GGTGCCGTTGCTTCTTTCTG+AGG | - | chr1_4:73584064-73584083 | Msa0184260:CDS | 55.0% |
| TGAGGCAACTTGGGAGGACA+AGG | + | chr1_4:73584322-73584341 | None:intergenic | 55.0% | |
| !! | AGTTGGTGAGGCAACTTGGG+AGG | + | chr1_4:73584328-73584347 | None:intergenic | 55.0% |
| TCGCTGACGATGCATCAGCT+TGG | - | chr1_4:73584461-73584480 | Msa0184260:intron | 55.0% | |
| CGCTGACGATGCATCAGCTT+GGG | - | chr1_4:73584462-73584481 | Msa0184260:intron | 55.0% | |
| GCTGACGATGCATCAGCTTG+GGG | - | chr1_4:73584463-73584482 | Msa0184260:intron | 55.0% | |
| GATGGAAAACACTGAGCGCG+TGG | + | chr1_4:73585739-73585758 | None:intergenic | 55.0% | |
| TCTCACACCAGGCGACTCGT+CGG | - | chr1_4:73583203-73583222 | Msa0184260:intron | 60.0% | |
| CCCCCCAACACACCAACTGT+TGG | + | chr1_4:73583879-73583898 | None:intergenic | 60.0% | |
| CTGTCATCCGACGAGTCGCC+TGG | + | chr1_4:73583213-73583232 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 73581697 | 73587728 | 73581697 | ID=Msa0184260;Name=Msa0184260 |
| chr1_4 | mRNA | 73581697 | 73587728 | 73581697 | ID=Msa0184260-mRNA-1;Parent=Msa0184260;Name=Msa0184260-mRNA-1;_AED=0.12;_eAED=0.12;_QI=167|0.77|0.9|1|0.88|0.9|10|461|268 |
| chr1_4 | exon | 73581697 | 73582212 | 73581697 | ID=Msa0184260-mRNA-1:exon:25035;Parent=Msa0184260-mRNA-1 |
| chr1_4 | exon | 73582752 | 73582864 | 73582752 | ID=Msa0184260-mRNA-1:exon:25034;Parent=Msa0184260-mRNA-1 |
| chr1_4 | exon | 73582940 | 73583020 | 73582940 | ID=Msa0184260-mRNA-1:exon:25033;Parent=Msa0184260-mRNA-1 |
| chr1_4 | exon | 73583490 | 73583542 | 73583490 | ID=Msa0184260-mRNA-1:exon:25032;Parent=Msa0184260-mRNA-1 |
| chr1_4 | exon | 73583637 | 73583745 | 73583637 | ID=Msa0184260-mRNA-1:exon:25031;Parent=Msa0184260-mRNA-1 |
| chr1_4 | exon | 73584056 | 73584115 | 73584056 | ID=Msa0184260-mRNA-1:exon:25030;Parent=Msa0184260-mRNA-1 |
| chr1_4 | exon | 73584232 | 73584314 | 73584232 | ID=Msa0184260-mRNA-1:exon:25029;Parent=Msa0184260-mRNA-1 |
| chr1_4 | exon | 73587032 | 73587088 | 73587032 | ID=Msa0184260-mRNA-1:exon:25028;Parent=Msa0184260-mRNA-1 |
| chr1_4 | exon | 73587267 | 73587444 | 73587267 | ID=Msa0184260-mRNA-1:exon:25027;Parent=Msa0184260-mRNA-1 |
| chr1_4 | exon | 73587544 | 73587728 | 73587544 | ID=Msa0184260-mRNA-1:exon:25026;Parent=Msa0184260-mRNA-1 |
| chr1_4 | five_prime_UTR | 73587562 | 73587728 | 73587562 | ID=Msa0184260-mRNA-1:five_prime_utr;Parent=Msa0184260-mRNA-1 |
| chr1_4 | CDS | 73587544 | 73587561 | 73587544 | ID=Msa0184260-mRNA-1:cds;Parent=Msa0184260-mRNA-1 |
| chr1_4 | CDS | 73587267 | 73587444 | 73587267 | ID=Msa0184260-mRNA-1:cds;Parent=Msa0184260-mRNA-1 |
| chr1_4 | CDS | 73587032 | 73587088 | 73587032 | ID=Msa0184260-mRNA-1:cds;Parent=Msa0184260-mRNA-1 |
| chr1_4 | CDS | 73584232 | 73584314 | 73584232 | ID=Msa0184260-mRNA-1:cds;Parent=Msa0184260-mRNA-1 |
| chr1_4 | CDS | 73584056 | 73584115 | 73584056 | ID=Msa0184260-mRNA-1:cds;Parent=Msa0184260-mRNA-1 |
| chr1_4 | CDS | 73583637 | 73583745 | 73583637 | ID=Msa0184260-mRNA-1:cds;Parent=Msa0184260-mRNA-1 |
| chr1_4 | CDS | 73583490 | 73583542 | 73583490 | ID=Msa0184260-mRNA-1:cds;Parent=Msa0184260-mRNA-1 |
| chr1_4 | CDS | 73582940 | 73583020 | 73582940 | ID=Msa0184260-mRNA-1:cds;Parent=Msa0184260-mRNA-1 |
| chr1_4 | CDS | 73582752 | 73582864 | 73582752 | ID=Msa0184260-mRNA-1:cds;Parent=Msa0184260-mRNA-1 |
| chr1_4 | CDS | 73582158 | 73582212 | 73582158 | ID=Msa0184260-mRNA-1:cds;Parent=Msa0184260-mRNA-1 |
| chr1_4 | three_prime_UTR | 73581697 | 73582157 | 73581697 | ID=Msa0184260-mRNA-1:three_prime_utr;Parent=Msa0184260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
