AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1128350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1128350 MtrunA17_Chr7g0270441 94.783 115 6 0 1 115 1 115 1.11e-75 224
Msa1128350 MtrunA17_Chr2g0324021 82.609 115 19 1 1 115 1 114 2.09e-63 193
Msa1128350 MtrunA17_Chr7g0270461 92.784 97 7 0 5 101 45 141 1.28e-59 180
Msa1128350 MtrunA17_Chr7g0270451 69.912 113 33 1 1 113 1 112 5.06e-52 164
Msa1128350 MtrunA17_Chr7g0266981 57.009 107 46 0 4 110 11 117 1.59e-35 122
Msa1128350 MtrunA17_Chr4g0044111 56.075 107 47 0 4 110 11 117 5.63e-35 121
Msa1128350 MtrunA17_Chr6g0459281 57.407 108 45 1 5 111 12 119 3.67e-34 119
Msa1128350 MtrunA17_Chr6g0459261 54.630 108 48 1 5 111 24 131 7.17e-34 118
Msa1128350 MtrunA17_Chr6g0459331 56.075 107 46 1 5 110 12 118 7.74e-34 118
Msa1128350 MtrunA17_Chr6g0459271 53.704 108 49 1 5 111 12 119 2.34e-33 117
Msa1128350 MtrunA17_Chr6g0459351 54.054 111 50 1 2 111 9 119 8.31e-33 115
Msa1128350 MtrunA17_Chr7g0266891 56.190 105 46 0 6 110 7 111 1.17e-32 115
Msa1128350 MtrunA17_Chr6g0459301 51.304 115 51 2 1 110 5 119 1.16e-31 112
Msa1128350 MtrunA17_Chr7g0267011 51.887 106 51 0 4 109 6 111 6.86e-31 108
Msa1128350 MtrunA17_Chr4g0026001 51.887 106 51 0 4 109 12 117 2.01e-30 109
Msa1128350 MtrunA17_Chr4g0044131 52.830 106 50 0 4 109 6 111 2.91e-30 109
Msa1128350 MtrunA17_Chr7g0244061 53.509 114 50 2 2 113 25 137 5.44e-30 108
Msa1128350 MtrunA17_Chr7g0252031 52.252 111 51 2 4 113 33 142 1.01e-29 108
Msa1128350 MtrunA17_Chr4g0025971 51.852 108 52 0 4 111 12 119 1.33e-29 107
Msa1128350 MtrunA17_Chr4g0025981 48.696 115 57 1 7 119 42 156 4.24e-29 107
Msa1128350 MtrunA17_Chr3g0084871 47.500 120 60 2 4 120 14 133 3.81e-28 103
Msa1128350 MtrunA17_Chr4g0040371 47.500 120 57 3 1 119 14 128 7.47e-27 100
Msa1128350 MtrunA17_Chr7g0268591 42.727 110 62 1 4 113 31 139 4.84e-25 95.9
Msa1128350 MtrunA17_Chr7g0267001 52.439 82 39 0 4 85 6 87 2.57e-21 85.5
Msa1128350 MtrunA17_Chr7g0266991 43.925 107 43 1 4 110 23 112 5.93e-20 81.6
Msa1128350 MtrunA17_Chr7g0247011 38.202 89 51 2 11 95 9 97 1.03e-11 60.1
Msa1128350 MtrunA17_Chr6g0459341 70.455 44 12 1 2 44 9 52 1.17e-11 57.0
Msa1128350 MtrunA17_Chr3g0118511 39.080 87 50 1 9 92 3 89 3.73e-11 58.5
Msa1128350 MtrunA17_Chr8g0349741 36.957 92 53 1 9 95 7 98 7.28e-11 57.8
Msa1128350 MtrunA17_Chr4g0045041 34.021 97 53 1 8 93 6 102 7.93e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1128350 AT2G47140.1 57.391 115 48 1 1 115 1 114 1.22e-40 135
Msa1128350 AT3G29260.1 53.043 115 53 1 1 115 1 114 6.54e-37 126
Msa1128350 AT2G47130.1 53.043 115 53 1 1 115 1 114 1.18e-36 125
Msa1128350 AT3G29250.2 53.913 115 52 1 1 115 1 114 1.22e-36 125
Msa1128350 AT3G29250.3 53.913 115 52 1 1 115 37 150 1.87e-36 126
Msa1128350 AT3G29250.1 53.097 113 52 1 3 115 41 152 1.73e-35 123
Msa1128350 AT2G47120.1 52.174 115 54 1 1 115 1 114 7.86e-35 120
Msa1128350 AT2G47120.2 52.252 111 52 1 5 115 6 115 4.64e-34 119
Msa1128350 AT3G26760.1 44.348 115 62 2 2 115 32 145 2.48e-26 99.8
Msa1128350 AT3G26770.1 44.444 117 62 3 4 119 39 153 3.03e-25 97.1
Msa1128350 AT3G51680.1 48.276 116 54 2 4 113 30 145 3.97e-25 96.7
Msa1128350 AT4G03140.1 44.860 107 58 1 4 110 76 181 5.57e-25 97.1
Msa1128350 AT3G42960.1 47.500 120 52 4 2 118 4 115 8.93e-23 90.1
Msa1128350 AT1G52340.1 41.441 111 61 1 4 110 16 126 2.96e-22 89.0
Msa1128350 AT1G49670.2 32.759 116 62 2 8 112 6 116 2.07e-11 60.1
Msa1128350 AT1G49670.1 32.759 116 62 2 8 112 6 116 2.41e-11 59.7

Find 40 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTGTGTTGAAAGCAAATA+TGG 0.276834 7_3:-80238614 Msa1128350:three_prime_UTR
AGCAGATATCAATGATGAAT+TGG 0.283540 7_3:-80238925 Msa1128350:CDS
AATCATCAATGTCGAGAAAA+AGG 0.290314 7_3:-80239252 Msa1128350:intron
GTTTGCTCTGTATCTTGTAT+AGG 0.300964 7_3:+80239308 None:intergenic
GTGAAGACATTCGTGGAAAA+TGG 0.309291 7_3:-80238963 Msa1128350:CDS
CACCAAGTTGCTACAACAAT+TGG 0.313612 7_3:-80238900 Msa1128350:CDS
TTACAGCTAGTAAAATATAT+TGG 0.325435 7_3:+80238689 None:intergenic
TTCGAATCTTCTTTAAATCT+AGG 0.352038 7_3:+80238642 None:intergenic
GTTGCTAAACATAATGTCTA+AGG 0.368211 7_3:+80238788 None:intergenic
ATGATTAAATGAGCTACCTT+TGG 0.372736 7_3:+80239269 None:intergenic
TTATCATAGGTTGGAGGGTA+AGG 0.422520 7_3:-80239030 Msa1128350:intron
GAACCTTTCAAACAAACAAA+AGG 0.428306 7_3:+80239375 None:intergenic
GCAGATATCAATGATGAATT+GGG 0.463215 7_3:-80238924 Msa1128350:CDS
ACCCAATTGTTGTAGCAACT+TGG 0.467514 7_3:+80238898 None:intergenic
TTTAGCAACGCTGGAATTGA+AGG 0.468853 7_3:-80238774 Msa1128350:CDS
CGAATGTCATAAATTATTGA+CGG 0.469693 7_3:-80239510 None:intergenic
CACGAATGTCTTCACTGTCT+CGG 0.471132 7_3:+80238971 None:intergenic
ACCAAGTTGCTACAACAATT+GGG 0.482213 7_3:-80238899 Msa1128350:CDS
GACATTATGTTTAGCAACGC+TGG 0.491704 7_3:-80238783 Msa1128350:CDS
GGTAAGGTTGCTATAGTGAC+TGG 0.496701 7_3:-80239014 Msa1128350:CDS
ACTCGTTTCTCGCTTCCATA+CGG 0.509467 7_3:+80238356 None:intergenic
AACCTTTCAAACAAACAAAA+GGG 0.512153 7_3:+80239376 None:intergenic
AGTTGCTACAACAATTGGGT+TGG 0.551015 7_3:-80238895 Msa1128350:CDS
ATAAATTATTGACGGTAATG+TGG 0.560621 7_3:-80239502 None:intergenic
GTTGTGTTGAAAGCAAATAT+GGG 0.562968 7_3:-80238613 Msa1128350:three_prime_UTR
CGAGACAGTGAAGACATTCG+TGG 0.564162 7_3:-80238970 Msa1128350:CDS
TTATACTCAAAGTATCCGTA+TGG 0.571836 7_3:-80238371 Msa1128350:three_prime_UTR
GGAAACAGTAGCTTTCGCAT+TGG 0.572052 7_3:-80238823 Msa1128350:CDS
ATTTCAGAATTCAAAGCCAA+AGG 0.578099 7_3:-80239285 Msa1128350:five_prime_UTR
TTTACTAGCTGTAATAAATG+TGG 0.579734 7_3:-80238680 Msa1128350:exon
TTGAGTATAAGTTTGTATGA+CGG 0.581613 7_3:+80238384 None:intergenic
GTAAGGTTGCTATAGTGACT+GGG 0.597391 7_3:-80239013 Msa1128350:CDS
CATCTCTCACATCACAATGG+TGG 0.624448 7_3:+80238859 None:intergenic
TTTCATCTCTCACATCACAA+TGG 0.636508 7_3:+80238856 None:intergenic
AGCAACGCTGGAATTGAAGG+TGG 0.637971 7_3:-80238771 Msa1128350:CDS
TAAGTAAAACTGTCGACTTG+TGG 0.646836 7_3:-80238494 Msa1128350:three_prime_UTR
ACAAACAAAAGGGAAAAGAG+AGG 0.663817 7_3:+80239386 None:intergenic
TAAGGTTGCTATAGTGACTG+GGG 0.680742 7_3:-80239012 Msa1128350:CDS
AAGGTTGCTATAGTGACTGG+GGG 0.716926 7_3:-80239011 Msa1128350:CDS
GAATGAATTTGACAACAACA+TGG 0.719541 7_3:-80238718 Msa1128350:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCTTAATTAATTTTATCAT+AGG - chr7_3:80238822-80238841 Msa1128350:CDS 10.0%
!!! ATCTTAATTAATTTTATCAT+AGG - chr7_3:80238822-80238841 Msa1128350:CDS 10.0%
!!! TTTTCCCTTTAAATAAAATT+AGG - chr7_3:80238515-80238534 Msa1128350:three_prime_UTR 15.0%
!!! TAATTAATTTTATCATAGGT+TGG - chr7_3:80238826-80238845 Msa1128350:CDS 15.0%
!!! TATAAATAGTAGTTTTTCAT+AGG - chr7_3:80239441-80239460 Msa1128350:five_prime_UTR 15.0%
!!! TTTTCCCTTTAAATAAAATT+AGG - chr7_3:80238515-80238534 Msa1128350:three_prime_UTR 15.0%
!!! TAATTAATTTTATCATAGGT+TGG - chr7_3:80238826-80238845 Msa1128350:CDS 15.0%
!!! TATAAATAGTAGTTTTTCAT+AGG - chr7_3:80239441-80239460 Msa1128350:five_prime_UTR 15.0%
!!! AGTGTTATATTTTGAATGAA+TGG + chr7_3:80238412-80238431 None:intergenic 20.0%
!!! GCTTCCTAATTTTATTTAAA+GGG + chr7_3:80238522-80238541 None:intergenic 20.0%
!!! AGCTTCCTAATTTTATTTAA+AGG + chr7_3:80238523-80238542 None:intergenic 20.0%
!!! GATTTAACCTTTTTGAAAAT+TGG - chr7_3:80238696-80238715 Msa1128350:CDS 20.0%
!! TTATTAGGATATATTCATGT+GGG + chr7_3:80238742-80238761 None:intergenic 20.0%
!! TTACAGCTAGTAAAATATAT+TGG + chr7_3:80239179-80239198 None:intergenic 20.0%
!!! AGTGTTATATTTTGAATGAA+TGG + chr7_3:80238412-80238431 None:intergenic 20.0%
!!! GCTTCCTAATTTTATTTAAA+GGG + chr7_3:80238522-80238541 None:intergenic 20.0%
!!! AGCTTCCTAATTTTATTTAA+AGG + chr7_3:80238523-80238542 None:intergenic 20.0%
!!! GATTTAACCTTTTTGAAAAT+TGG - chr7_3:80238696-80238715 Msa1128350:CDS 20.0%
!! TTATTAGGATATATTCATGT+GGG + chr7_3:80238742-80238761 None:intergenic 20.0%
!! TTACAGCTAGTAAAATATAT+TGG + chr7_3:80239179-80239198 None:intergenic 20.0%
! AACCTTTCAAACAAACAAAA+GGG + chr7_3:80238492-80238511 None:intergenic 25.0%
! CAAAATTTCACCTAATAAGA+TGG + chr7_3:80238674-80238693 None:intergenic 25.0%
! CTTATTAGGATATATTCATG+TGG + chr7_3:80238743-80238762 None:intergenic 25.0%
! CATGTAGTAATGTTCTTATT+AGG + chr7_3:80238757-80238776 None:intergenic 25.0%
! TGTATTCATGCAACATAAAT+AGG + chr7_3:80238792-80238811 None:intergenic 25.0%
!!! TTAATTTTATCATAGGTTGG+AGG - chr7_3:80238829-80238848 Msa1128350:CDS 25.0%
!!! TAATTTTATCATAGGTTGGA+GGG - chr7_3:80238830-80238849 Msa1128350:CDS 25.0%
! TTTACTAGCTGTAATAAATG+TGG - chr7_3:80239185-80239204 Msa1128350:intron 25.0%
! TTCGAATCTTCTTTAAATCT+AGG + chr7_3:80239226-80239245 None:intergenic 25.0%
!! TAGTTTTTCATAGGAAAAAC+AGG - chr7_3:80239450-80239469 Msa1128350:five_prime_UTR 25.0%
! TTGAGTATAAGTTTGTATGA+CGG + chr7_3:80239484-80239503 None:intergenic 25.0%
! AACCTTTCAAACAAACAAAA+GGG + chr7_3:80238492-80238511 None:intergenic 25.0%
! CAAAATTTCACCTAATAAGA+TGG + chr7_3:80238674-80238693 None:intergenic 25.0%
! CTTATTAGGATATATTCATG+TGG + chr7_3:80238743-80238762 None:intergenic 25.0%
! CATGTAGTAATGTTCTTATT+AGG + chr7_3:80238757-80238776 None:intergenic 25.0%
! TGTATTCATGCAACATAAAT+AGG + chr7_3:80238792-80238811 None:intergenic 25.0%
!!! TTAATTTTATCATAGGTTGG+AGG - chr7_3:80238829-80238848 Msa1128350:CDS 25.0%
!!! TAATTTTATCATAGGTTGGA+GGG - chr7_3:80238830-80238849 Msa1128350:CDS 25.0%
! TTTACTAGCTGTAATAAATG+TGG - chr7_3:80239185-80239204 Msa1128350:intron 25.0%
! TTCGAATCTTCTTTAAATCT+AGG + chr7_3:80239226-80239245 None:intergenic 25.0%
!! TAGTTTTTCATAGGAAAAAC+AGG - chr7_3:80239450-80239469 Msa1128350:five_prime_UTR 25.0%
! TTGAGTATAAGTTTGTATGA+CGG + chr7_3:80239484-80239503 None:intergenic 25.0%
!! TTCCCTTTTGTTTGTTTGAA+AGG - chr7_3:80238487-80238506 Msa1128350:three_prime_UTR 30.0%
GAACCTTTCAAACAAACAAA+AGG + chr7_3:80238493-80238512 None:intergenic 30.0%
ATTTCAGAATTCAAAGCCAA+AGG - chr7_3:80238580-80238599 Msa1128350:three_prime_UTR 30.0%
ATGATTAAATGAGCTACCTT+TGG + chr7_3:80238599-80238618 None:intergenic 30.0%
AATCATCAATGTCGAGAAAA+AGG - chr7_3:80238613-80238632 Msa1128350:three_prime_UTR 30.0%
AGCAGATATCAATGATGAAT+TGG - chr7_3:80238940-80238959 Msa1128350:CDS 30.0%
GCAGATATCAATGATGAATT+GGG - chr7_3:80238941-80238960 Msa1128350:CDS 30.0%
GTTGCTAAACATAATGTCTA+AGG + chr7_3:80239080-80239099 None:intergenic 30.0%
GAATGAATTTGACAACAACA+TGG - chr7_3:80239147-80239166 Msa1128350:intron 30.0%
TGTTGTGTTGAAAGCAAATA+TGG - chr7_3:80239251-80239270 Msa1128350:intron 30.0%
GTTGTGTTGAAAGCAAATAT+GGG - chr7_3:80239252-80239271 Msa1128350:intron 30.0%
! TTATACTCAAAGTATCCGTA+TGG - chr7_3:80239494-80239513 Msa1128350:five_prime_UTR 30.0%
!! TTCCCTTTTGTTTGTTTGAA+AGG - chr7_3:80238487-80238506 Msa1128350:three_prime_UTR 30.0%
GAACCTTTCAAACAAACAAA+AGG + chr7_3:80238493-80238512 None:intergenic 30.0%
ATTTCAGAATTCAAAGCCAA+AGG - chr7_3:80238580-80238599 Msa1128350:three_prime_UTR 30.0%
ATGATTAAATGAGCTACCTT+TGG + chr7_3:80238599-80238618 None:intergenic 30.0%
AATCATCAATGTCGAGAAAA+AGG - chr7_3:80238613-80238632 Msa1128350:three_prime_UTR 30.0%
AGCAGATATCAATGATGAAT+TGG - chr7_3:80238940-80238959 Msa1128350:CDS 30.0%
GCAGATATCAATGATGAATT+GGG - chr7_3:80238941-80238960 Msa1128350:CDS 30.0%
GTTGCTAAACATAATGTCTA+AGG + chr7_3:80239080-80239099 None:intergenic 30.0%
GAATGAATTTGACAACAACA+TGG - chr7_3:80239147-80239166 Msa1128350:intron 30.0%
TGTTGTGTTGAAAGCAAATA+TGG - chr7_3:80239251-80239270 Msa1128350:intron 30.0%
GTTGTGTTGAAAGCAAATAT+GGG - chr7_3:80239252-80239271 Msa1128350:intron 30.0%
! TTATACTCAAAGTATCCGTA+TGG - chr7_3:80239494-80239513 Msa1128350:five_prime_UTR 30.0%
! GAAAAGAGAGGCTTTTCAAT+GGG + chr7_3:80238470-80238489 None:intergenic 35.0%
ACAAACAAAAGGGAAAAGAG+AGG + chr7_3:80238482-80238501 None:intergenic 35.0%
GTTTGCTCTGTATCTTGTAT+AGG + chr7_3:80238560-80238579 None:intergenic 35.0%
CTAACACTCACCATCTTATT+AGG - chr7_3:80238661-80238680 Msa1128350:three_prime_UTR 35.0%
! TGTGAGGCCAATTTTCAAAA+AGG + chr7_3:80238706-80238725 None:intergenic 35.0%
ACCAAGTTGCTACAACAATT+GGG - chr7_3:80238966-80238985 Msa1128350:CDS 35.0%
TTTCATCTCTCACATCACAA+TGG + chr7_3:80239012-80239031 None:intergenic 35.0%
GAGAGATGAAAAACAAGTTG+AGG - chr7_3:80239021-80239040 Msa1128350:CDS 35.0%
GCTTTCGCATTGGAAAAATA+TGG - chr7_3:80239052-80239071 Msa1128350:intron 35.0%
! TTCGATAAAGCAGTTTTCGA+AGG - chr7_3:80239294-80239313 Msa1128350:five_prime_UTR 35.0%
!! TAAGTAAAACTGTCGACTTG+TGG - chr7_3:80239371-80239390 Msa1128350:five_prime_UTR 35.0%
! GAAAAGAGAGGCTTTTCAAT+GGG + chr7_3:80238470-80238489 None:intergenic 35.0%
ACAAACAAAAGGGAAAAGAG+AGG + chr7_3:80238482-80238501 None:intergenic 35.0%
GTTTGCTCTGTATCTTGTAT+AGG + chr7_3:80238560-80238579 None:intergenic 35.0%
CTAACACTCACCATCTTATT+AGG - chr7_3:80238661-80238680 Msa1128350:three_prime_UTR 35.0%
! TGTGAGGCCAATTTTCAAAA+AGG + chr7_3:80238706-80238725 None:intergenic 35.0%
ACCAAGTTGCTACAACAATT+GGG - chr7_3:80238966-80238985 Msa1128350:CDS 35.0%
TTTCATCTCTCACATCACAA+TGG + chr7_3:80239012-80239031 None:intergenic 35.0%
GAGAGATGAAAAACAAGTTG+AGG - chr7_3:80239021-80239040 Msa1128350:CDS 35.0%
GCTTTCGCATTGGAAAAATA+TGG - chr7_3:80239052-80239071 Msa1128350:intron 35.0%
! TTCGATAAAGCAGTTTTCGA+AGG - chr7_3:80239294-80239313 Msa1128350:five_prime_UTR 35.0%
!! TAAGTAAAACTGTCGACTTG+TGG - chr7_3:80239371-80239390 Msa1128350:five_prime_UTR 35.0%
! GGAAAAGAGAGGCTTTTCAA+TGG + chr7_3:80238471-80238490 None:intergenic 40.0%
GGGTTTCACACTATTATGTG+AGG + chr7_3:80238722-80238741 None:intergenic 40.0%
! TTATCATAGGTTGGAGGGTA+AGG - chr7_3:80238835-80238854 Msa1128350:CDS 40.0%
GTAAGGTTGCTATAGTGACT+GGG - chr7_3:80238852-80238871 Msa1128350:CDS 40.0%
TAAGGTTGCTATAGTGACTG+GGG - chr7_3:80238853-80238872 Msa1128350:CDS 40.0%
GTGAAGACATTCGTGGAAAA+TGG - chr7_3:80238902-80238921 Msa1128350:CDS 40.0%
CACCAAGTTGCTACAACAAT+TGG - chr7_3:80238965-80238984 Msa1128350:CDS 40.0%
ACCCAATTGTTGTAGCAACT+TGG + chr7_3:80238970-80238989 None:intergenic 40.0%
AGTTGCTACAACAATTGGGT+TGG - chr7_3:80238970-80238989 Msa1128350:CDS 40.0%
GACATTATGTTTAGCAACGC+TGG - chr7_3:80239082-80239101 Msa1128350:intron 40.0%
TTTAGCAACGCTGGAATTGA+AGG - chr7_3:80239091-80239110 Msa1128350:intron 40.0%
! GATAAAGCAGTTTTCGAAGG+TGG - chr7_3:80239297-80239316 Msa1128350:five_prime_UTR 40.0%
! GGAAAAGAGAGGCTTTTCAA+TGG + chr7_3:80238471-80238490 None:intergenic 40.0%
GGGTTTCACACTATTATGTG+AGG + chr7_3:80238722-80238741 None:intergenic 40.0%
! TTATCATAGGTTGGAGGGTA+AGG - chr7_3:80238835-80238854 Msa1128350:CDS 40.0%
GTAAGGTTGCTATAGTGACT+GGG - chr7_3:80238852-80238871 Msa1128350:CDS 40.0%
TAAGGTTGCTATAGTGACTG+GGG - chr7_3:80238853-80238872 Msa1128350:CDS 40.0%
GTGAAGACATTCGTGGAAAA+TGG - chr7_3:80238902-80238921 Msa1128350:CDS 40.0%
CACCAAGTTGCTACAACAAT+TGG - chr7_3:80238965-80238984 Msa1128350:CDS 40.0%
ACCCAATTGTTGTAGCAACT+TGG + chr7_3:80238970-80238989 None:intergenic 40.0%
AGTTGCTACAACAATTGGGT+TGG - chr7_3:80238970-80238989 Msa1128350:CDS 40.0%
GACATTATGTTTAGCAACGC+TGG - chr7_3:80239082-80239101 Msa1128350:intron 40.0%
TTTAGCAACGCTGGAATTGA+AGG - chr7_3:80239091-80239110 Msa1128350:intron 40.0%
! GATAAAGCAGTTTTCGAAGG+TGG - chr7_3:80239297-80239316 Msa1128350:five_prime_UTR 40.0%
GAGTGTTAGACGCAAGAGTA+AGG + chr7_3:80238650-80238669 None:intergenic 45.0%
GGTAAGGTTGCTATAGTGAC+TGG - chr7_3:80238851-80238870 Msa1128350:CDS 45.0%
AAGGTTGCTATAGTGACTGG+GGG - chr7_3:80238854-80238873 Msa1128350:CDS 45.0%
CACGAATGTCTTCACTGTCT+CGG + chr7_3:80238897-80238916 None:intergenic 45.0%
CATCTCTCACATCACAATGG+TGG + chr7_3:80239009-80239028 None:intergenic 45.0%
GGAAACAGTAGCTTTCGCAT+TGG - chr7_3:80239042-80239061 Msa1128350:intron 45.0%
GAGTGTTAGACGCAAGAGTA+AGG + chr7_3:80238650-80238669 None:intergenic 45.0%
GGTAAGGTTGCTATAGTGAC+TGG - chr7_3:80238851-80238870 Msa1128350:CDS 45.0%
AAGGTTGCTATAGTGACTGG+GGG - chr7_3:80238854-80238873 Msa1128350:CDS 45.0%
CACGAATGTCTTCACTGTCT+CGG + chr7_3:80238897-80238916 None:intergenic 45.0%
CATCTCTCACATCACAATGG+TGG + chr7_3:80239009-80239028 None:intergenic 45.0%
GGAAACAGTAGCTTTCGCAT+TGG - chr7_3:80239042-80239061 Msa1128350:intron 45.0%
CGAGACAGTGAAGACATTCG+TGG - chr7_3:80238895-80238914 Msa1128350:CDS 50.0%
AGCAACGCTGGAATTGAAGG+TGG - chr7_3:80239094-80239113 Msa1128350:intron 50.0%
CGAGACAGTGAAGACATTCG+TGG - chr7_3:80238895-80238914 Msa1128350:CDS 50.0%
AGCAACGCTGGAATTGAAGG+TGG - chr7_3:80239094-80239113 Msa1128350:intron 50.0%
ATAGTGACTGGGGGAGCAAG+CGG - chr7_3:80238863-80238882 Msa1128350:CDS 55.0%
ATAGTGACTGGGGGAGCAAG+CGG - chr7_3:80238863-80238882 Msa1128350:CDS 55.0%
ACTGGGGGAGCAAGCGGAAT+AGG - chr7_3:80238869-80238888 Msa1128350:CDS 60.0%
ACTGGGGGAGCAAGCGGAAT+AGG - chr7_3:80238869-80238888 Msa1128350:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 80238369 80239518 80238369 ID=Msa1128350;Name=Msa1128350
chr7_3 mRNA 80238369 80239518 80238369 ID=Msa1128350-mRNA-1;Parent=Msa1128350;Name=Msa1128350-mRNA-1;_AED=0.00;_eAED=0.00;_QI=252|1|1|1|1|1|2|326|120
chr7_3 exon 80238369 80239043 80238369 ID=Msa1128350-mRNA-1:exon:22888;Parent=Msa1128350-mRNA-1
chr7_3 exon 80239253 80239518 80239253 ID=Msa1128350-mRNA-1:exon:22887;Parent=Msa1128350-mRNA-1
chr7_3 five_prime_UTR 80239267 80239518 80239267 ID=Msa1128350-mRNA-1:five_prime_utr;Parent=Msa1128350-mRNA-1
chr7_3 CDS 80239253 80239266 80239253 ID=Msa1128350-mRNA-1:cds;Parent=Msa1128350-mRNA-1
chr7_3 CDS 80238695 80239043 80238695 ID=Msa1128350-mRNA-1:cds;Parent=Msa1128350-mRNA-1
chr7_3 three_prime_UTR 80238369 80238694 80238369 ID=Msa1128350-mRNA-1:three_prime_utr;Parent=Msa1128350-mRNA-1
Gene Sequence

>Msa1128350

ATGTCGAGAAAAAGGTTGGAGGGTAAGGTTGCTATAGTGACTGGGGGAGCAAGCGGAATAGGAGCCGAGACAGTGAAGACATTCGTGGAAAATGGAGCATTTGTAGTCATAGCAGATATCAATGATGAATTGGGTCACCAAGTTGCTACAACAATTGGGTTGGACAAAGTGAGTTACCACCATTGTGATGTGAGAGATGAAAAACAAGTTGAGGAAACAGTAGCTTTCGCATTGGAAAAATATGGAACCTTAGACATTATGTTTAGCAACGCTGGAATTGAAGGTGGTATGTGTAGCAGCATACTAGAATTTGATCTGAATGAATTTGACAACAACATGGTGTTAGCCAATATATTTTACTAG

Protein sequence

>Msa1128350

MSRKRLEGKVAIVTGGASGIGAETVKTFVENGAFVVIADINDELGHQVATTIGLDKVSYHHCDVRDEKQVEETVAFALEKYGTLDIMFSNAGIEGGMCSSILEFDLNEFDNNMVLANIFY*