Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098610 | sp|Q7FRS8|CNBLA_ARATH | 59.690 | 258 | 80 | 2 | 9 | 266 | 20 | 253 | 1.06e-101 | 300 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098610 | G7IB88 | 91.489 | 282 | 10 | 2 | 1 | 269 | 1 | 281 | 0.0 | 511 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005090 | Msa0098610 | 0.882757 | 7.970615e-71 | -8.615850e-47 |
| Msa0053150 | Msa0098610 | 0.936410 | 1.815045e-97 | -8.615850e-47 |
| Msa0098610 | Msa0098640 | 0.881683 | 1.957511e-70 | -8.615850e-47 |
| Msa0098610 | Msa0184260 | 0.894036 | 3.596566e-75 | -8.615850e-47 |
| Msa0098610 | Msa1082760 | 0.818498 | 1.900149e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098610 | MtrunA17_Chr1g0151621 | 89.219 | 269 | 9 | 1 | 1 | 269 | 1 | 249 | 2.64e-173 | 478 |
| Msa0098610 | MtrunA17_Chr8g0341941 | 54.651 | 258 | 93 | 3 | 12 | 265 | 14 | 251 | 2.39e-85 | 255 |
| Msa0098610 | MtrunA17_Chr4g0076551 | 66.111 | 180 | 61 | 0 | 90 | 269 | 47 | 226 | 1.73e-83 | 249 |
| Msa0098610 | MtrunA17_Chr5g0446931 | 66.111 | 180 | 61 | 0 | 90 | 269 | 46 | 225 | 2.27e-83 | 249 |
| Msa0098610 | MtrunA17_Chr3g0102821 | 67.232 | 177 | 58 | 0 | 90 | 266 | 46 | 222 | 2.61e-83 | 249 |
| Msa0098610 | MtrunA17_Chr4g0055421 | 64.205 | 176 | 63 | 0 | 90 | 265 | 31 | 206 | 1.76e-77 | 234 |
| Msa0098610 | MtrunA17_Chr2g0290771 | 58.065 | 186 | 78 | 0 | 84 | 269 | 5 | 190 | 5.20e-77 | 231 |
| Msa0098610 | MtrunA17_Chr8g0388331 | 60.674 | 178 | 70 | 0 | 90 | 267 | 31 | 208 | 5.31e-75 | 227 |
| Msa0098610 | MtrunA17_Chr8g0346911 | 48.276 | 232 | 118 | 1 | 36 | 267 | 2 | 231 | 2.92e-71 | 219 |
| Msa0098610 | MtrunA17_Chr2g0290751 | 60.494 | 162 | 64 | 0 | 90 | 251 | 49 | 210 | 3.08e-67 | 207 |
| Msa0098610 | MtrunA17_Chr2g0290781 | 55.367 | 177 | 79 | 0 | 90 | 266 | 51 | 227 | 6.57e-66 | 205 |
| Msa0098610 | MtrunA17_Chr2g0290761 | 59.877 | 162 | 65 | 0 | 90 | 251 | 49 | 210 | 8.59e-66 | 204 |
| Msa0098610 | MtrunA17_Chr4g0063121 | 44.318 | 176 | 78 | 1 | 90 | 265 | 8 | 163 | 2.17e-46 | 154 |
| Msa0098610 | MtrunA17_Chr3g0126801 | 66.667 | 96 | 32 | 0 | 171 | 266 | 6 | 101 | 2.58e-42 | 140 |
| Msa0098610 | MtrunA17_Chr3g0126811 | 67.089 | 79 | 26 | 0 | 90 | 168 | 32 | 110 | 9.73e-31 | 111 |
| Msa0098610 | MtrunA17_Chr5g0399921 | 60.000 | 85 | 34 | 0 | 90 | 174 | 30 | 114 | 2.40e-26 | 99.8 |
| Msa0098610 | MtrunA17_Chr8g0388321 | 46.296 | 108 | 33 | 2 | 90 | 188 | 73 | 164 | 6.51e-21 | 87.0 |
| Msa0098610 | MtrunA17_Chr8g0388311 | 49.296 | 71 | 36 | 0 | 191 | 261 | 1 | 71 | 1.76e-20 | 83.2 |
| Msa0098610 | MtrunA17_Chr5g0399931 | 55.556 | 72 | 32 | 0 | 191 | 262 | 1 | 72 | 1.10e-19 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098610 | AT4G33000.2 | 59.160 | 262 | 83 | 2 | 5 | 266 | 6 | 243 | 4.95e-103 | 300 |
| Msa0098610 | AT4G33000.1 | 59.690 | 258 | 80 | 2 | 9 | 266 | 20 | 253 | 1.08e-102 | 300 |
| Msa0098610 | AT5G24270.5 | 67.232 | 177 | 58 | 0 | 86 | 262 | 6 | 182 | 1.27e-83 | 249 |
| Msa0098610 | AT4G26570.1 | 66.667 | 177 | 59 | 0 | 90 | 266 | 46 | 222 | 4.49e-83 | 249 |
| Msa0098610 | AT5G24270.4 | 68.786 | 173 | 54 | 0 | 90 | 262 | 35 | 207 | 6.28e-83 | 248 |
| Msa0098610 | AT5G24270.1 | 68.786 | 173 | 54 | 0 | 90 | 262 | 35 | 207 | 6.28e-83 | 248 |
| Msa0098610 | AT5G24270.2 | 68.786 | 173 | 54 | 0 | 90 | 262 | 35 | 207 | 6.28e-83 | 248 |
| Msa0098610 | AT4G26570.2 | 65.193 | 181 | 59 | 1 | 90 | 266 | 46 | 226 | 7.47e-81 | 243 |
| Msa0098610 | AT5G55990.1 | 65.730 | 178 | 61 | 0 | 90 | 267 | 46 | 223 | 8.15e-81 | 243 |
| Msa0098610 | AT5G55990.2 | 65.730 | 178 | 61 | 0 | 90 | 267 | 46 | 223 | 8.15e-81 | 243 |
| Msa0098610 | AT5G47100.1 | 64.972 | 177 | 62 | 0 | 90 | 266 | 31 | 207 | 3.68e-78 | 236 |
| Msa0098610 | AT4G17615.4 | 52.814 | 231 | 84 | 2 | 36 | 266 | 2 | 207 | 5.08e-76 | 230 |
| Msa0098610 | AT4G17615.1 | 52.814 | 231 | 84 | 2 | 36 | 266 | 2 | 207 | 5.08e-76 | 230 |
| Msa0098610 | AT4G17615.5 | 52.814 | 231 | 84 | 2 | 36 | 266 | 2 | 207 | 5.08e-76 | 230 |
| Msa0098610 | AT1G64480.2 | 61.236 | 178 | 69 | 0 | 90 | 267 | 35 | 212 | 5.54e-76 | 230 |
| Msa0098610 | AT1G64480.3 | 61.236 | 178 | 69 | 0 | 90 | 267 | 35 | 212 | 5.54e-76 | 230 |
| Msa0098610 | AT1G64480.1 | 61.236 | 178 | 69 | 0 | 90 | 267 | 35 | 212 | 5.54e-76 | 230 |
| Msa0098610 | AT4G33000.5 | 55.399 | 213 | 71 | 2 | 5 | 217 | 6 | 194 | 3.34e-72 | 221 |
| Msa0098610 | AT4G33000.4 | 55.924 | 211 | 69 | 2 | 5 | 215 | 6 | 192 | 5.12e-72 | 219 |
| Msa0098610 | AT4G33000.6 | 55.924 | 211 | 69 | 2 | 5 | 215 | 6 | 192 | 5.12e-72 | 219 |
| Msa0098610 | AT1G64480.4 | 61.963 | 163 | 62 | 0 | 90 | 252 | 35 | 197 | 2.05e-69 | 213 |
| Msa0098610 | AT5G24270.3 | 64.286 | 154 | 55 | 0 | 109 | 262 | 7 | 160 | 4.38e-68 | 209 |
| Msa0098610 | AT4G17615.3 | 60.947 | 169 | 66 | 0 | 90 | 258 | 31 | 199 | 1.17e-67 | 210 |
| Msa0098610 | AT4G17615.2 | 60.131 | 153 | 61 | 0 | 115 | 267 | 14 | 166 | 3.12e-62 | 194 |
| Msa0098610 | AT4G16350.2 | 53.409 | 176 | 78 | 1 | 90 | 265 | 44 | 215 | 4.30e-62 | 195 |
| Msa0098610 | AT4G16350.1 | 53.409 | 176 | 78 | 1 | 90 | 265 | 44 | 215 | 4.30e-62 | 195 |
| Msa0098610 | AT4G26560.1 | 48.936 | 188 | 83 | 2 | 92 | 266 | 23 | 210 | 7.14e-58 | 184 |
| Msa0098610 | AT4G01420.1 | 47.399 | 173 | 91 | 0 | 90 | 262 | 30 | 202 | 2.71e-52 | 169 |
| Msa0098610 | AT5G47100.2 | 64.000 | 125 | 45 | 0 | 90 | 214 | 31 | 155 | 1.07e-50 | 164 |
| Msa0098610 | AT4G01420.2 | 47.239 | 163 | 86 | 0 | 90 | 252 | 30 | 192 | 2.70e-48 | 159 |
| Msa0098610 | AT4G33000.3 | 50.909 | 165 | 57 | 2 | 5 | 169 | 6 | 146 | 2.32e-46 | 152 |
Find 62 sgRNAs with CRISPR-Local
Find 336 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCAAGTAAGCTTGTCTTTA+AGG | 0.023685 | 1_3:-4623987 | Msa0098610:three_prime_UTR |
| GTAGATTATGTTTCTGTTTA+TGG | 0.035791 | 1_3:+4629878 | Msa0098620:intron |
| CATGAAAACTTGGTGGCTTT+AGG | 0.228877 | 1_3:+4624189 | None:intergenic |
| TAATCAAACCTATGAATTAT+AGG | 0.236206 | 1_3:+4624117 | None:intergenic |
| CTAGCCTCTATGATCGAAAT+TGG | 0.270825 | 1_3:+4629757 | Msa0098620:intron |
| ATGAAAACTTGGTGGCTTTA+GGG | 0.270974 | 1_3:+4624190 | None:intergenic |
| GGATTGGTTATTGCTGTAAA+TGG | 0.273428 | 1_3:-4624280 | Msa0098610:three_prime_UTR |
| CGGTCACTCTTTATGTATAA+TGG | 0.295450 | 1_3:+4624055 | None:intergenic |
| CAGGATGTATCTAGAGGAAT+AGG | 0.310364 | 1_3:-4629606 | Msa0098610:CDS |
| CTCTATGACCTGAGACAAAC+AGG | 0.330842 | 1_3:-4625692 | Msa0098610:CDS |
| TGGCTTTAGGGTATGATTGC+AGG | 0.351457 | 1_3:+4624202 | None:intergenic |
| GCCACTCATAGCTGTCTTTG+AGG | 0.377672 | 1_3:-4629559 | Msa0098610:CDS |
| ATTTGTAGCCTATAATTCAT+AGG | 0.385610 | 1_3:-4624125 | Msa0098610:three_prime_UTR |
| GTCTATTTGAGGCAAATGAT+TGG | 0.407101 | 1_3:-4624301 | Msa0098610:three_prime_UTR |
| TTAAAGACAAGCTTACTTGC+GGG | 0.410464 | 1_3:+4623989 | None:intergenic |
| AAGAAGGGTTATGATGGTTA+TGG | 0.412803 | 1_3:+4629790 | Msa0098620:intron |
| AGGATGTATCTAGAGGAATA+GGG | 0.424974 | 1_3:-4629605 | Msa0098610:CDS |
| GAACAAAAGCATACAATCAT+TGG | 0.430568 | 1_3:+4624077 | None:intergenic |
| GCACTATTTCAAACCCCAAA+TGG | 0.446613 | 1_3:-4626261 | Msa0098610:CDS |
| GTAAAATCAGCAAAGAAGAT+TGG | 0.453764 | 1_3:-4624994 | Msa0098610:CDS |
| CAATAAACCCTGTTTGTCTC+AGG | 0.457501 | 1_3:+4625684 | None:intergenic |
| TTGGTTTCAGGTGAAGCAAA+TGG | 0.479980 | 1_3:-4625191 | Msa0098610:intron |
| TTGTTATTTGATAATGATGA+TGG | 0.481087 | 1_3:-4629212 | Msa0098610:CDS |
| AAACACCTACAGCATATTGT+TGG | 0.483900 | 1_3:+4629236 | None:intergenic |
| TAGGCTACAAATATTTCTGT+TGG | 0.488335 | 1_3:+4624136 | None:intergenic |
| ACATACAAAACATGAAAACT+TGG | 0.489189 | 1_3:+4624179 | None:intergenic |
| AATTGGTGATGATGATAAGA+AGG | 0.490633 | 1_3:+4629774 | Msa0098620:intron |
| TTTGAGGCAAATGATTGGAT+TGG | 0.494507 | 1_3:-4624296 | Msa0098610:three_prime_UTR |
| TTTCACTAAAATTAAAGTGT+GGG | 0.502088 | 1_3:-4623892 | Msa0098610:three_prime_UTR |
| CATCCATTGGGGCATAAGGA+TGG | 0.505415 | 1_3:+4625832 | None:intergenic |
| TACATCTGGTTTCTTGAGCA+AGG | 0.512152 | 1_3:+4629445 | None:intergenic |
| TTTCCATCCTTATGCCCCAA+TGG | 0.516605 | 1_3:-4625835 | Msa0098610:CDS |
| AGTAGCTCTGTAATTGATGA+TGG | 0.519726 | 1_3:-4626428 | Msa0098610:CDS |
| ATTTCACTAAAATTAAAGTG+TGG | 0.529768 | 1_3:-4623893 | Msa0098610:three_prime_UTR |
| TACAAAACATGAAAACTTGG+TGG | 0.533813 | 1_3:+4624182 | None:intergenic |
| GTCATGTTCTTCAAGAGAGA+CGG | 0.538874 | 1_3:+4624950 | None:intergenic |
| ACTACTGAACTCACTTCCTC+TGG | 0.539821 | 1_3:+4625659 | None:intergenic |
| TAAATAAAGTTAAATACACT+TGG | 0.562418 | 1_3:+4623961 | None:intergenic |
| TCTTGAAGCTATTGTTGACA+AGG | 0.562525 | 1_3:-4625122 | Msa0098610:intron |
| GCTGTAAATGGTAACAACAT+TGG | 0.565233 | 1_3:-4624268 | Msa0098610:three_prime_UTR |
| GATGATAAGAAGGGTTATGA+TGG | 0.576539 | 1_3:+4629784 | Msa0098620:intron |
| ATTGGTGATGATGATAAGAA+GGG | 0.577485 | 1_3:+4629775 | Msa0098620:intron |
| TACAGGGGAATGAGTAGGCA+TGG | 0.577752 | 1_3:+4629722 | Msa0098620:intron |
| TCTGATTTGAAAATAAAACT+AGG | 0.584623 | 1_3:+4624354 | None:intergenic |
| AATTTGCTGACAAACAATCA+TGG | 0.588998 | 1_3:-4624244 | Msa0098610:three_prime_UTR |
| AAAGTTACAGGGGAATGAGT+AGG | 0.590893 | 1_3:+4629717 | Msa0098620:intron |
| CTTAAAGACAAGCTTACTTG+CGG | 0.597953 | 1_3:+4623988 | None:intergenic |
| ATCACCAATTTCGATCATAG+AGG | 0.600338 | 1_3:-4629761 | Msa0098610:five_prime_UTR |
| GGATGTATCTAGAGGAATAG+GGG | 0.600419 | 1_3:-4629604 | Msa0098610:CDS |
| TATATCCAACAATATGCTGT+AGG | 0.601683 | 1_3:-4629241 | Msa0098610:CDS |
| ATTCCACAGGATGTATCTAG+AGG | 0.601973 | 1_3:-4629612 | Msa0098610:intron |
| AAACATAATCTACATAGGAA+AGG | 0.604565 | 1_3:-4629868 | Msa0098610:five_prime_UTR |
| AACAGAAACATAATCTACAT+AGG | 0.605114 | 1_3:-4629873 | Msa0098610:five_prime_UTR |
| GATGGAAAACACTGAGCGCG+TGG | 0.605651 | 1_3:+4625850 | None:intergenic |
| GACGTTGATCAAGACAATGA+TGG | 0.607782 | 1_3:-4625016 | Msa0098610:CDS |
| AACAGGGTTTATTGAGCCAG+AGG | 0.608476 | 1_3:-4625675 | Msa0098610:CDS |
| ATCATTGTCTTGATCAACGT+CGG | 0.634735 | 1_3:+4625018 | None:intergenic |
| TGATGATGGCTTGATTCACA+AGG | 0.635403 | 1_3:-4626414 | Msa0098610:intron |
| ACCTCAAAGACAGCTATGAG+TGG | 0.672289 | 1_3:+4629558 | None:intergenic |
| AATAAAACTAGGAAACGCAG+TGG | 0.710414 | 1_3:+4624365 | None:intergenic |
| TCTATGACCTGAGACAAACA+GGG | 0.757678 | 1_3:-4625691 | Msa0098610:CDS |
| TTCACTTGAAGATGTCACTG+CGG | 0.763080 | 1_3:+4624035 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGAAAATGTAATAGAAA+TGG | + | chr1_3:4626936-4626955 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTCTTTCAATTGT+AGG | - | chr1_3:4627469-4627488 | Msa0098610:intron | 15.0% |
| !!! | ATTTTTGATGAAAAAAGAAA+CGG | - | chr1_3:4627870-4627889 | Msa0098610:intron | 15.0% |
| !!! | TAAAATTTTAAAGACTTTAG+AGG | + | chr1_3:4629345-4629364 | None:intergenic | 15.0% |
| !! | TAAATAAAGTTAAATACACT+TGG | + | chr1_3:4629809-4629828 | Msa0098620:intron | 15.0% |
| !! | AATGAATTAGAAAAATGAGT+AGG | + | chr1_3:4624083-4624102 | None:intergenic | 20.0% |
| !! | AAAGTGGAAAATAATTGAAA+TGG | + | chr1_3:4624384-4624403 | None:intergenic | 20.0% |
| !!! | ATTTCAATTATTTTCCACTT+TGG | - | chr1_3:4624383-4624402 | Msa0098610:intron | 20.0% |
| !!! | TTGTTATTTGATAATGATGA+TGG | - | chr1_3:4624555-4624574 | Msa0098610:intron | 20.0% |
| !! | AACAATAACAAATTGTTCAA+CGG | + | chr1_3:4625964-4625983 | None:intergenic | 20.0% |
| !! | TGTAAGAATAAGAAAAACAA+AGG | + | chr1_3:4626088-4626107 | None:intergenic | 20.0% |
| !!! | AGAAAACTGATTTTGTTTTA+TGG | - | chr1_3:4626108-4626127 | Msa0098610:intron | 20.0% |
| !! | TATAATCTATTTGAAGATTC+TGG | + | chr1_3:4626190-4626209 | None:intergenic | 20.0% |
| !!! | ATAATTTCTGGTTCTATTAT+CGG | + | chr1_3:4626381-4626400 | None:intergenic | 20.0% |
| !!! | TCTATTACATTTTCAAAACT+AGG | - | chr1_3:4626938-4626957 | Msa0098610:intron | 20.0% |
| !!! | TTAAGTTTGTTAGTTTAGTT+AGG | + | chr1_3:4627058-4627077 | None:intergenic | 20.0% |
| !! | TATCATTAGAGATATATTGT+TGG | + | chr1_3:4627124-4627143 | None:intergenic | 20.0% |
| !! | TACAATTTCATCTACAATAT+AGG | + | chr1_3:4627604-4627623 | None:intergenic | 20.0% |
| !! | TAGATGAAATTGTATTGTAA+TGG | - | chr1_3:4627610-4627629 | Msa0098610:intron | 20.0% |
| !! | GTATATTTGAACATAAATCA+TGG | + | chr1_3:4628303-4628322 | None:intergenic | 20.0% |
| !! | AAATATACACTTGAAAATTG+TGG | - | chr1_3:4628315-4628334 | Msa0098610:intron | 20.0% |
| !! | ATTGGTTAATGAAAATAACA+AGG | + | chr1_3:4628400-4628419 | None:intergenic | 20.0% |
| !!! | TTATTTTCATTAACCAATCA+CGG | - | chr1_3:4628402-4628421 | Msa0098610:intron | 20.0% |
| !!! | TCAAAATTGTTGTTGAAATT+TGG | - | chr1_3:4628461-4628480 | Msa0098610:intron | 20.0% |
| !!! | TATTAAGTGTTTGATTTACT+TGG | - | chr1_3:4628557-4628576 | Msa0098610:intron | 20.0% |
| !!! | ATTTTTGCATACTTCAAATA+AGG | + | chr1_3:4628847-4628866 | None:intergenic | 20.0% |
| !! | TATCAATGATTGATATTGTA+TGG | - | chr1_3:4629233-4629252 | Msa0098610:CDS | 20.0% |
| !! | TATATTGAAATGTTAACCAT+TGG | - | chr1_3:4629277-4629296 | Msa0098610:intron | 20.0% |
| !!! | TCTGATTTGAAAATAAAACT+AGG | + | chr1_3:4629416-4629435 | None:intergenic | 20.0% |
| !!! | TAGTTTTATTTTCAAATCAG+AGG | - | chr1_3:4629415-4629434 | Msa0098610:intron | 20.0% |
| !!! | AATGTTTTATTGTCTATTTG+AGG | - | chr1_3:4629455-4629474 | Msa0098610:CDS | 20.0% |
| !! | TAATCAAACCTATGAATTAT+AGG | + | chr1_3:4629653-4629672 | None:intergenic | 20.0% |
| !! | ATTTCACTAAAATTAAAGTG+TGG | - | chr1_3:4629874-4629893 | Msa0098610:five_prime_UTR | 20.0% |
| !! | TTTCACTAAAATTAAAGTGT+GGG | - | chr1_3:4629875-4629894 | Msa0098610:five_prime_UTR | 20.0% |
| !! | GTAGATTATGTTTCTGTTTA+TGG | + | chr1_3:4623892-4623911 | None:intergenic | 25.0% |
| ! | AACAGAAACATAATCTACAT+AGG | - | chr1_3:4623894-4623913 | Msa0098610:three_prime_UTR | 25.0% |
| ! | AAACATAATCTACATAGGAA+AGG | - | chr1_3:4623899-4623918 | Msa0098610:three_prime_UTR | 25.0% |
| ! | AATTAGAAAAATGAGTAGGT+AGG | + | chr1_3:4624079-4624098 | None:intergenic | 25.0% |
| !!! | GATTTTTGAGTGTGAAAATT+GGG | + | chr1_3:4624275-4624294 | None:intergenic | 25.0% |
| !!! | AGATTTTTGAGTGTGAAAAT+TGG | + | chr1_3:4624276-4624295 | None:intergenic | 25.0% |
| ! | AATGGAAATCATTGAATGAA+GGG | + | chr1_3:4624366-4624385 | None:intergenic | 25.0% |
| ! | AAATGGAAATCATTGAATGA+AGG | + | chr1_3:4624367-4624386 | None:intergenic | 25.0% |
| !! | TTTTACTGAGGATGAAAAAA+TGG | + | chr1_3:4624445-4624464 | None:intergenic | 25.0% |
| !! | CATTGTTTACTATTTTACTG+AGG | + | chr1_3:4624457-4624476 | None:intergenic | 25.0% |
| ! | CTCAGTAAAATAGTAAACAA+TGG | - | chr1_3:4624455-4624474 | Msa0098610:intron | 25.0% |
| !! | TGTTTAAAACTTTATGCAAG+TGG | - | chr1_3:4624700-4624719 | Msa0098610:intron | 25.0% |
| !! | GTTTAAAACTTTATGCAAGT+GGG | - | chr1_3:4624701-4624720 | Msa0098610:intron | 25.0% |
| !! | TTTAAAACTTTATGCAAGTG+GGG | - | chr1_3:4624702-4624721 | Msa0098610:intron | 25.0% |
| !! | TCCCAAAATTACATTTTAGA+GGG | - | chr1_3:4624861-4624880 | Msa0098610:intron | 25.0% |
| !!! | CTTGTCCTATAGTTTTATAT+GGG | - | chr1_3:4624966-4624985 | Msa0098610:CDS | 25.0% |
| ! | TGACATTCATTATAATGTTG+AGG | - | chr1_3:4625926-4625945 | Msa0098610:intron | 25.0% |
| ! | GACATTCATTATAATGTTGA+GGG | - | chr1_3:4625927-4625946 | Msa0098610:intron | 25.0% |
| !! | TGGTAACTAACTTTAAGAAA+TGG | + | chr1_3:4626170-4626189 | None:intergenic | 25.0% |
| ! | TCAAATTATAGAGAATTGCT+TGG | + | chr1_3:4626310-4626329 | None:intergenic | 25.0% |
| !!! | TTGAAACTTAGAAGTATCAT+TGG | + | chr1_3:4626832-4626851 | None:intergenic | 25.0% |
| ! | AAATAAATCAGTGACAGAAA+TGG | + | chr1_3:4626877-4626896 | None:intergenic | 25.0% |
| !! | TTACATTTTCAAAACTAGGT+CGG | - | chr1_3:4626942-4626961 | Msa0098610:intron | 25.0% |
| ! | ACTTTGATTAACAAAAGCTT+TGG | - | chr1_3:4627172-4627191 | Msa0098610:intron | 25.0% |
| !!! | AAAGCTTTGGTTTGAATAAT+TGG | - | chr1_3:4627185-4627204 | Msa0098610:intron | 25.0% |
| ! | ACTTTGATTAACAAAAGCTT+TGG | - | chr1_3:4627172-4627191 | Msa0098610:intron | 25.0% |
| !!! | AAAGCTTTGGTTTGAATAAT+TGG | - | chr1_3:4627185-4627204 | Msa0098610:intron | 25.0% |
| !!! | TTTTTTCTTTCAATTGTAGG+TGG | - | chr1_3:4627472-4627491 | Msa0098610:intron | 25.0% |
| !! | AAAAAGATTTTCTCCATTTG+GGG | + | chr1_3:4627522-4627541 | None:intergenic | 25.0% |
| !! | GAAAAAGATTTTCTCCATTT+GGG | + | chr1_3:4627523-4627542 | None:intergenic | 25.0% |
| !! | AGAAAAAGATTTTCTCCATT+TGG | + | chr1_3:4627524-4627543 | None:intergenic | 25.0% |
| !! | AAATGGAGAAAATCTTTTTC+TGG | - | chr1_3:4627523-4627542 | Msa0098610:intron | 25.0% |
| ! | GCATTATAATATGCTTTGAT+CGG | - | chr1_3:4627728-4627747 | Msa0098610:intron | 25.0% |
| ! | TTAACACATTAGTACATTCA+TGG | + | chr1_3:4627821-4627840 | None:intergenic | 25.0% |
| ! | AAATTCCATGTTTCTTCTAT+AGG | - | chr1_3:4627839-4627858 | Msa0098610:intron | 25.0% |
| ! | AAAAACCTATAGAAGAAACA+TGG | + | chr1_3:4627847-4627866 | None:intergenic | 25.0% |
| !!! | AGTCTATTTTTTCATCCATT+GGG | + | chr1_3:4627950-4627969 | None:intergenic | 25.0% |
| ! | AACTGCAAAATTATCATCAT+GGG | + | chr1_3:4628046-4628065 | None:intergenic | 25.0% |
| ! | AGGTTAAGGAATATAATTTC+AGG | - | chr1_3:4628206-4628225 | Msa0098610:intron | 25.0% |
| ! | CACACAATTTAGACAATTAA+TGG | + | chr1_3:4628257-4628276 | None:intergenic | 25.0% |
| !!! | AATGGTTATAGCTATTTTGA+TGG | - | chr1_3:4628594-4628613 | Msa0098610:intron | 25.0% |
| ! | CAATGAGTTATATTGTTTAC+AGG | - | chr1_3:4628700-4628719 | Msa0098610:intron | 25.0% |
| ! | ATAAGTGTTTATGCTATAAG+CGG | + | chr1_3:4628949-4628968 | None:intergenic | 25.0% |
| ! | TCAGAATAGCTTATGAAAAT+AGG | + | chr1_3:4629048-4629067 | None:intergenic | 25.0% |
| ! | AAATAAGCCGAAACAATTTA+TGG | - | chr1_3:4629079-4629098 | Msa0098610:intron | 25.0% |
| ! | ACATACAAAACATGAAAACT+TGG | + | chr1_3:4629591-4629610 | None:intergenic | 25.0% |
| !! | TTCATGTTTTGTATGTTTGA+AGG | - | chr1_3:4629595-4629614 | Msa0098610:CDS | 25.0% |
| ! | ATTTGTAGCCTATAATTCAT+AGG | - | chr1_3:4629642-4629661 | Msa0098610:intron | 25.0% |
| !! | ATTGGTGATGATGATAAGAA+GGG | + | chr1_3:4623995-4624014 | None:intergenic | 30.0% |
| !! | AATTGGTGATGATGATAAGA+AGG | + | chr1_3:4623996-4624015 | None:intergenic | 30.0% |
| TAGGTAGGTAAAAAGTTACA+GGG | + | chr1_3:4624064-4624083 | None:intergenic | 30.0% | |
| ATGAAATGAGTAGTTACATC+TGG | + | chr1_3:4624339-4624358 | None:intergenic | 30.0% | |
| ATGGAAATCATTGAATGAAG+GGG | + | chr1_3:4624365-4624384 | None:intergenic | 30.0% | |
| GTAAAATAGTAAACAATGGC+AGG | - | chr1_3:4624459-4624478 | Msa0098610:intron | 30.0% | |
| TATATCCAACAATATGCTGT+AGG | - | chr1_3:4624526-4624545 | Msa0098610:intron | 30.0% | |
| !! | ATAATGATGATGGTATGTAC+AGG | - | chr1_3:4624565-4624584 | Msa0098610:intron | 30.0% |
| ACCATAATAATTGATCACGT+TGG | - | chr1_3:4624610-4624629 | Msa0098610:intron | 30.0% | |
| TCCAACGTGATCAATTATTA+TGG | + | chr1_3:4624614-4624633 | None:intergenic | 30.0% | |
| TTAATAGACCATATCAAAGC+TGG | + | chr1_3:4624735-4624754 | None:intergenic | 30.0% | |
| TACAATAAAGTTGAGCAGTT+AGG | + | chr1_3:4624763-4624782 | None:intergenic | 30.0% | |
| ! | CTCCCAAAATTACATTTTAG+AGG | - | chr1_3:4624860-4624879 | Msa0098610:intron | 30.0% |
| !!! | CCCCTCTAAAATGTAATTTT+GGG | + | chr1_3:4624865-4624884 | None:intergenic | 30.0% |
| !! | CCCAAAATTACATTTTAGAG+GGG | - | chr1_3:4624862-4624881 | Msa0098610:intron | 30.0% |
| !!! | ACCCCTCTAAAATGTAATTT+TGG | + | chr1_3:4624866-4624885 | None:intergenic | 30.0% |
| TAGAAATCAAGGCCTTTAAA+GGG | + | chr1_3:4624944-4624963 | None:intergenic | 30.0% | |
| TTAGAAATCAAGGCCTTTAA+AGG | + | chr1_3:4624945-4624964 | None:intergenic | 30.0% | |
| !!! | GCTTGTCCTATAGTTTTATA+TGG | - | chr1_3:4624965-4624984 | Msa0098610:CDS | 30.0% |
| !!! | TCCTATAGTTTTATATGGGA+TGG | - | chr1_3:4624970-4624989 | Msa0098610:CDS | 30.0% |
| TCCATCCCATATAAAACTAT+AGG | + | chr1_3:4624974-4624993 | None:intergenic | 30.0% | |
| GAAAAGAGGTTATATCATGT+GGG | + | chr1_3:4625056-4625075 | None:intergenic | 30.0% | |
| AGGGTTATATTGTATATTGC+TGG | + | chr1_3:4625095-4625114 | None:intergenic | 30.0% | |
| ACAATATAACCCTTGTCTTT+AGG | - | chr1_3:4625102-4625121 | Msa0098610:intron | 30.0% | |
| AATCGAAGAAGAGATTTAAC+GGG | + | chr1_3:4625246-4625265 | None:intergenic | 30.0% | |
| GAATCGAAGAAGAGATTTAA+CGG | + | chr1_3:4625247-4625266 | None:intergenic | 30.0% | |
| TTAAATCTCTTCTTCGATTC+AGG | - | chr1_3:4625247-4625266 | Msa0098610:intron | 30.0% | |
| TGTTGTCCAAATGATAGTAA+GGG | + | chr1_3:4625488-4625507 | None:intergenic | 30.0% | |
| TTGTTGTCCAAATGATAGTA+AGG | + | chr1_3:4625489-4625508 | None:intergenic | 30.0% | |
| CAATTCAACTGACACTTATA+AGG | - | chr1_3:4625719-4625738 | Msa0098610:intron | 30.0% | |
| ATTGTGAGAATTCTAAGTGT+GGG | - | chr1_3:4625780-4625799 | Msa0098610:intron | 30.0% | |
| TGTTATTGTTTCACTTGATC+TGG | - | chr1_3:4625974-4625993 | Msa0098610:intron | 30.0% | |
| GTTATTGTTTCACTTGATCT+GGG | - | chr1_3:4625975-4625994 | Msa0098610:intron | 30.0% | |
| AACCAGAAATTATATACGCT+GGG | - | chr1_3:4626388-4626407 | Msa0098610:intron | 30.0% | |
| ! | AATTCAGAAAAAAGTGCACT+TGG | + | chr1_3:4626780-4626799 | None:intergenic | 30.0% |
| ! | ATTTCGTTTTCCTCTTCTTT+TGG | - | chr1_3:4626797-4626816 | Msa0098610:intron | 30.0% |
| TCACAAGGTAAGATCATATT+TGG | - | chr1_3:4627368-4627387 | Msa0098610:intron | 30.0% | |
| ! | TGAATGCAAGTTTTTCACAT+AGG | - | chr1_3:4627401-4627420 | Msa0098610:intron | 30.0% |
| ! | GAATGCAAGTTTTTCACATA+GGG | - | chr1_3:4627402-4627421 | Msa0098610:intron | 30.0% |
| !!! | GTTCCTATATTTTTTAGCCA+TGG | - | chr1_3:4627558-4627577 | Msa0098610:intron | 30.0% |
| ATGCCATGGCTAAAAAATAT+AGG | + | chr1_3:4627564-4627583 | None:intergenic | 30.0% | |
| TAACATGAAGAAATATGCCA+TGG | + | chr1_3:4627578-4627597 | None:intergenic | 30.0% | |
| !!! | GTCTATTTTTTCATCCATTG+GGG | + | chr1_3:4627949-4627968 | None:intergenic | 30.0% |
| !!! | CAGTCTATTTTTTCATCCAT+TGG | + | chr1_3:4627951-4627970 | None:intergenic | 30.0% |
| CAACTGCAAAATTATCATCA+TGG | + | chr1_3:4628047-4628066 | None:intergenic | 30.0% | |
| !! | GGTTAATTTTGGCAAGTATA+AGG | - | chr1_3:4628186-4628205 | Msa0098610:intron | 30.0% |
| ! | TTTTGGCAAGTATAAGGTTA+AGG | - | chr1_3:4628192-4628211 | Msa0098610:intron | 30.0% |
| ! | CTGTGTTTAATTGTGTTGAT+TGG | - | chr1_3:4628354-4628373 | Msa0098610:intron | 30.0% |
| ! | TGTTTGATTTACTTGGTTTC+AGG | - | chr1_3:4628564-4628583 | Msa0098610:intron | 30.0% |
| GTAAAATCAGCAAAGAAGAT+TGG | - | chr1_3:4628773-4628792 | Msa0098610:intron | 30.0% | |
| TGACATGCCATAAATTGTTT+CGG | + | chr1_3:4629089-4629108 | None:intergenic | 30.0% | |
| TCAGTAGAAAAGCTCAAATA+AGG | - | chr1_3:4629157-4629176 | Msa0098610:intron | 30.0% | |
| TAATGAAGTGAGAAAACCAA+TGG | + | chr1_3:4629296-4629315 | None:intergenic | 30.0% | |
| !! | TTTATTTTCAAATCAGAGGC+TGG | - | chr1_3:4629419-4629438 | Msa0098610:intron | 30.0% |
| !! | AATTTGCTGACAAACAATCA+TGG | - | chr1_3:4629523-4629542 | Msa0098610:CDS | 30.0% |
| TACAAAACATGAAAACTTGG+TGG | + | chr1_3:4629588-4629607 | None:intergenic | 30.0% | |
| ! | TAGGCTACAAATATTTCTGT+TGG | + | chr1_3:4629634-4629653 | None:intergenic | 30.0% |
| ! | GAACAAAAGCATACAATCAT+TGG | + | chr1_3:4629693-4629712 | None:intergenic | 30.0% |
| AAGAAGGGTTATGATGGTTA+TGG | + | chr1_3:4623980-4623999 | None:intergenic | 35.0% | |
| GATGATAAGAAGGGTTATGA+TGG | + | chr1_3:4623986-4624005 | None:intergenic | 35.0% | |
| ATCACCAATTTCGATCATAG+AGG | - | chr1_3:4624006-4624025 | Msa0098610:three_prime_UTR | 35.0% | |
| AGGTAGGTAAAAAGTTACAG+GGG | + | chr1_3:4624063-4624082 | None:intergenic | 35.0% | |
| GTAGGTAGGTAAAAAGTTAC+AGG | + | chr1_3:4624065-4624084 | None:intergenic | 35.0% | |
| !!! | TGCATGTTTTTTGATTCCAC+AGG | - | chr1_3:4624142-4624161 | Msa0098610:three_prime_UTR | 35.0% |
| AGGATGTATCTAGAGGAATA+GGG | - | chr1_3:4624162-4624181 | Msa0098610:three_prime_UTR | 35.0% | |
| TGGAAATCATTGAATGAAGG+GGG | + | chr1_3:4624364-4624383 | None:intergenic | 35.0% | |
| !! | TTGTATTGATTGAGCCAAAG+TGG | + | chr1_3:4624400-4624419 | None:intergenic | 35.0% |
| AAACACCTACAGCATATTGT+TGG | + | chr1_3:4624534-4624553 | None:intergenic | 35.0% | |
| GAGTTAATGTACCCCTTTAA+AGG | - | chr1_3:4624929-4624948 | Msa0098610:intron | 35.0% | |
| ! | AGAAATCAAGGCCTTTAAAG+GGG | + | chr1_3:4624943-4624962 | None:intergenic | 35.0% |
| TAGGACAAGCTTAGAAATCA+AGG | + | chr1_3:4624955-4624974 | None:intergenic | 35.0% | |
| GGAAAAGAGGTTATATCATG+TGG | + | chr1_3:4625057-4625076 | None:intergenic | 35.0% | |
| TGGTTGAAACCTAAAGACAA+GGG | + | chr1_3:4625114-4625133 | None:intergenic | 35.0% | |
| ATCGAAGAAGAGATTTAACG+GGG | + | chr1_3:4625245-4625264 | None:intergenic | 35.0% | |
| ACTAAGGTGTAGTTTCACAA+AGG | + | chr1_3:4625313-4625332 | None:intergenic | 35.0% | |
| ATTCTCAATTAAATGGCGCA+TGG | + | chr1_3:4625442-4625461 | None:intergenic | 35.0% | |
| ATGCCGGATTCTCAATTAAA+TGG | + | chr1_3:4625449-4625468 | None:intergenic | 35.0% | |
| TGATAGCTGAAAGTTTCAAG+TGG | + | chr1_3:4625669-4625688 | None:intergenic | 35.0% | |
| CTTGAAACTTTCAGCTATCA+TGG | - | chr1_3:4625669-4625688 | Msa0098610:intron | 35.0% | |
| ! | GGCAATTTCAACTTCAAGTT+TGG | - | chr1_3:4625690-4625709 | Msa0098610:CDS | 35.0% |
| TTCAACTGACACTTATAAGG+TGG | - | chr1_3:4625722-4625741 | Msa0098610:intron | 35.0% | |
| CATTGTGAGAATTCTAAGTG+TGG | - | chr1_3:4625779-4625798 | Msa0098610:intron | 35.0% | |
| TCCTATTGTTCCTCTTCATT+TGG | - | chr1_3:4625833-4625852 | Msa0098610:CDS | 35.0% | |
| TCCAAATGAAGAGGAACAAT+AGG | + | chr1_3:4625837-4625856 | None:intergenic | 35.0% | |
| TTCCTCTTCATTTGGACTTT+GGG | - | chr1_3:4625841-4625860 | Msa0098610:CDS | 35.0% | |
| ! | TGGACTTTGGGGAATATTAT+TGG | - | chr1_3:4625853-4625872 | Msa0098610:CDS | 35.0% |
| TGGGGAATATTATTGGAATG+CGG | - | chr1_3:4625860-4625879 | Msa0098610:CDS | 35.0% | |
| TATGGCAGATGATGAAATTC+AGG | - | chr1_3:4626126-4626145 | Msa0098610:intron | 35.0% | |
| ATGGCAGATGATGAAATTCA+GGG | - | chr1_3:4626127-4626146 | Msa0098610:intron | 35.0% | |
| GAACCAGAAATTATATACGC+TGG | - | chr1_3:4626387-4626406 | Msa0098610:intron | 35.0% | |
| AACCCAGCGTATATAATTTC+TGG | + | chr1_3:4626393-4626412 | None:intergenic | 35.0% | |
| TAAACTTTCAACGTAAACCC+TGG | + | chr1_3:4626420-4626439 | None:intergenic | 35.0% | |
| CTTGAGGATAAGGTTTCAAA+AGG | + | chr1_3:4626450-4626469 | None:intergenic | 35.0% | |
| !!! | CTTTTGAAACCTTATCCTCA+AGG | - | chr1_3:4626448-4626467 | Msa0098610:CDS | 35.0% |
| ! | CCTTCTTTTATGAGTGATAG+TGG | + | chr1_3:4626675-4626694 | None:intergenic | 35.0% |
| CCACTATCACTCATAAAAGA+AGG | - | chr1_3:4626672-4626691 | Msa0098610:intron | 35.0% | |
| AATGAAAACTCAAGTCCACA+AGG | + | chr1_3:4626721-4626740 | None:intergenic | 35.0% | |
| !!! | TTTTCCTCTTCTTTTGGTTC+TGG | - | chr1_3:4626803-4626822 | Msa0098610:intron | 35.0% |
| ! | TGCACAACTTTTGTATGACA+AGG | - | chr1_3:4626904-4626923 | Msa0098610:intron | 35.0% |
| ! | GCACAACTTTTGTATGACAA+GGG | - | chr1_3:4626905-4626924 | Msa0098610:intron | 35.0% |
| ! | CACAACTTTTGTATGACAAG+GGG | - | chr1_3:4626906-4626925 | Msa0098610:intron | 35.0% |
| ! | ACAACTTTTGTATGACAAGG+GGG | - | chr1_3:4626907-4626926 | Msa0098610:intron | 35.0% |
| GGAGTTATGTAGTTACAAGT+TGG | + | chr1_3:4627103-4627122 | None:intergenic | 35.0% | |
| ! | AGTAGCTCTGTAATTGATGA+TGG | - | chr1_3:4627339-4627358 | Msa0098610:intron | 35.0% |
| !!! | CAAAACAGTTGCTGATTTTG+AGG | - | chr1_3:4627687-4627706 | Msa0098610:intron | 35.0% |
| CATCATTGGAAGAATCACAA+TGG | + | chr1_3:4627798-4627817 | None:intergenic | 35.0% | |
| TAGTACATTCATGGCATCAT+TGG | + | chr1_3:4627812-4627831 | None:intergenic | 35.0% | |
| ! | TTCAGTTGAAGACAGTCTTT+TGG | - | chr1_3:4627975-4627994 | Msa0098610:intron | 35.0% |
| ACATCAAATTTCGACAACAG+TGG | - | chr1_3:4628165-4628184 | Msa0098610:intron | 35.0% | |
| ! | TCGACAACAGTGGTTAATTT+TGG | - | chr1_3:4628175-4628194 | Msa0098610:intron | 35.0% |
| AGTTAATTACGTTCCGTGAT+TGG | + | chr1_3:4628418-4628437 | None:intergenic | 35.0% | |
| TTATAATGCCTAAAGCGATG+CGG | + | chr1_3:4628527-4628546 | None:intergenic | 35.0% | |
| TCTTGAAGCTATTGTTGACA+AGG | - | chr1_3:4628645-4628664 | Msa0098610:intron | 35.0% | |
| ATCATTGTCTTGATCAACGT+CGG | + | chr1_3:4628752-4628771 | None:intergenic | 35.0% | |
| TGTATGCGAATTGTTCACTT+TGG | + | chr1_3:4628901-4628920 | None:intergenic | 35.0% | |
| ACAATTCGCATACAAACTTG+TGG | - | chr1_3:4628907-4628926 | Msa0098610:intron | 35.0% | |
| ! | GGTTTTCTCACTTCATTAAG+AGG | - | chr1_3:4629298-4629317 | Msa0098610:intron | 35.0% |
| AATAAAACTAGGAAACGCAG+TGG | + | chr1_3:4629405-4629424 | None:intergenic | 35.0% | |
| ! | GTCTATTTGAGGCAAATGAT+TGG | - | chr1_3:4629466-4629485 | Msa0098610:CDS | 35.0% |
| ! | TTTGAGGCAAATGATTGGAT+TGG | - | chr1_3:4629471-4629490 | Msa0098610:CDS | 35.0% |
| !! | GGATTGGTTATTGCTGTAAA+TGG | - | chr1_3:4629487-4629506 | Msa0098610:CDS | 35.0% |
| GCTGTAAATGGTAACAACAT+TGG | - | chr1_3:4629499-4629518 | Msa0098610:CDS | 35.0% | |
| ! | ATGAAAACTTGGTGGCTTTA+GGG | + | chr1_3:4629580-4629599 | None:intergenic | 35.0% |
| CGGTCACTCTTTATGTATAA+TGG | + | chr1_3:4629715-4629734 | Msa0098620:intron | 35.0% | |
| TTAAAGACAAGCTTACTTGC+GGG | + | chr1_3:4629781-4629800 | Msa0098620:intron | 35.0% | |
| CTTAAAGACAAGCTTACTTG+CGG | + | chr1_3:4629782-4629801 | Msa0098620:intron | 35.0% | |
| CTAGCCTCTATGATCGAAAT+TGG | + | chr1_3:4624013-4624032 | None:intergenic | 40.0% | |
| AAAGTTACAGGGGAATGAGT+AGG | + | chr1_3:4624053-4624072 | None:intergenic | 40.0% | |
| ATTCCACAGGATGTATCTAG+AGG | - | chr1_3:4624155-4624174 | Msa0098610:three_prime_UTR | 40.0% | |
| ATTCCTCTAGATACATCCTG+TGG | + | chr1_3:4624161-4624180 | None:intergenic | 40.0% | |
| CAGGATGTATCTAGAGGAAT+AGG | - | chr1_3:4624161-4624180 | Msa0098610:three_prime_UTR | 40.0% | |
| GGATGTATCTAGAGGAATAG+GGG | - | chr1_3:4624163-4624182 | Msa0098610:three_prime_UTR | 40.0% | |
| !! | GTTTTTGTCTTTGCTGTCAC+AGG | - | chr1_3:4624230-4624249 | Msa0098610:three_prime_UTR | 40.0% |
| ! | TACATCTGGTTTCTTGAGCA+AGG | + | chr1_3:4624325-4624344 | None:intergenic | 40.0% |
| GGAAATCATTGAATGAAGGG+GGG | + | chr1_3:4624363-4624382 | None:intergenic | 40.0% | |
| ! | GTTTGAAGCCAGCTTTGATA+TGG | - | chr1_3:4624724-4624743 | Msa0098610:intron | 40.0% |
| ATATGGGATGGAAGCTGAAA+TGG | - | chr1_3:4624982-4625001 | Msa0098610:CDS | 40.0% | |
| CAAATCTGTTGTGGGAAAAG+AGG | + | chr1_3:4625070-4625089 | None:intergenic | 40.0% | |
| GTGGTTGAAACCTAAAGACA+AGG | + | chr1_3:4625115-4625134 | None:intergenic | 40.0% | |
| !! | TTTTCAATGCTGTGTCGTTG+TGG | + | chr1_3:4625134-4625153 | None:intergenic | 40.0% |
| GTTTCACAAAGGCTTGATCA+GGG | + | chr1_3:4625302-4625321 | None:intergenic | 40.0% | |
| AGTTTCACAAAGGCTTGATC+AGG | + | chr1_3:4625303-4625322 | None:intergenic | 40.0% | |
| ! | TTCGTGTTGCTGATCTACTA+AGG | + | chr1_3:4625329-4625348 | None:intergenic | 40.0% |
| ATTAAATGGCGCATGGAGTA+AGG | + | chr1_3:4625435-4625454 | None:intergenic | 40.0% | |
| GCGCCATTTAATTGAGAATC+CGG | - | chr1_3:4625443-4625462 | Msa0098610:intron | 40.0% | |
| ATAGTAAGGGTCGATGGAAA+AGG | + | chr1_3:4625475-4625494 | None:intergenic | 40.0% | |
| CAAATGATAGTAAGGGTCGA+TGG | + | chr1_3:4625481-4625500 | None:intergenic | 40.0% | |
| CATCGACCCTTACTATCATT+TGG | - | chr1_3:4625479-4625498 | Msa0098610:intron | 40.0% | |
| CAACAAAGATTGCTCTCGTA+TGG | - | chr1_3:4625503-4625522 | Msa0098610:intron | 40.0% | |
| AAAGATTGCTCTCGTATGGT+TGG | - | chr1_3:4625507-4625526 | Msa0098610:intron | 40.0% | |
| CCAGTACTCTCTATATGCAT+CGG | + | chr1_3:4625574-4625593 | None:intergenic | 40.0% | |
| !! | GAGAGTACTGGTTTCGTTTA+TGG | - | chr1_3:4625583-4625602 | Msa0098610:intron | 40.0% |
| AACTGACACTTATAAGGTGG+TGG | - | chr1_3:4625725-4625744 | Msa0098610:intron | 40.0% | |
| TCTGTTGATGTGGATGGTAA+CGG | + | chr1_3:4625755-4625774 | None:intergenic | 40.0% | |
| ACAATGCTTCTCTGTTGATG+TGG | + | chr1_3:4625765-4625784 | None:intergenic | 40.0% | |
| ! | TAAGTGTGGGTGATAACGTT+TGG | - | chr1_3:4625793-4625812 | Msa0098610:intron | 40.0% |
| GTTCCTCTTCATTTGGACTT+TGG | - | chr1_3:4625840-4625859 | Msa0098610:CDS | 40.0% | |
| TCCTCTTCATTTGGACTTTG+GGG | - | chr1_3:4625842-4625861 | Msa0098610:CDS | 40.0% | |
| AATGCGGATGTGTATTTGAG+TGG | - | chr1_3:4625876-4625895 | Msa0098610:CDS | 40.0% | |
| !!! | GATGAAGTATCGTTTTCCGT+TGG | - | chr1_3:4626226-4626245 | Msa0098610:intron | 40.0% |
| CTTATCCTCAAGGTTGAAGT+CGG | - | chr1_3:4626458-4626477 | Msa0098610:CDS | 40.0% | |
| TTATCCTCAAGGTTGAAGTC+GGG | - | chr1_3:4626459-4626478 | Msa0098610:CDS | 40.0% | |
| TCGAGCTTGAGGAAAAGAAA+AGG | - | chr1_3:4626551-4626570 | Msa0098610:intron | 40.0% | |
| !! | TGATGATGGCTTGATTCACA+AGG | - | chr1_3:4627353-4627372 | Msa0098610:intron | 40.0% |
| GCACTATTTCAAACCCCAAA+TGG | - | chr1_3:4627506-4627525 | Msa0098610:intron | 40.0% | |
| GAGGAACTAACATAGCGAAA+TGG | - | chr1_3:4627706-4627725 | Msa0098610:intron | 40.0% | |
| ! | TTTTCATCCATTGGGGCATA+AGG | + | chr1_3:4627942-4627961 | None:intergenic | 40.0% |
| TCTATGACCTGAGACAAACA+GGG | - | chr1_3:4628076-4628095 | Msa0098610:intron | 40.0% | |
| CAATAAACCCTGTTTGTCTC+AGG | + | chr1_3:4628086-4628105 | None:intergenic | 40.0% | |
| ! | TTGGTTTCAGGTGAAGCAAA+TGG | - | chr1_3:4628576-4628595 | Msa0098610:intron | 40.0% |
| ATTGTCTGCAGACAAAGTGA+AGG | + | chr1_3:4628727-4628746 | None:intergenic | 40.0% | |
| GACGTTGATCAAGACAATGA+TGG | - | chr1_3:4628751-4628770 | Msa0098610:intron | 40.0% | |
| GTCATGTTCTTCAAGAGAGA+CGG | + | chr1_3:4628820-4628839 | None:intergenic | 40.0% | |
| ! | AAGCTATTCTGAAGAGTGTG+TGG | - | chr1_3:4629056-4629075 | Msa0098610:intron | 40.0% |
| TCAAATAAGGCAATGCAGAC+AGG | - | chr1_3:4629170-4629189 | Msa0098610:intron | 40.0% | |
| !! | TGTCACTTTGTCATCTTCCA+GGG | - | chr1_3:4629373-4629392 | Msa0098610:intron | 40.0% |
| ! | CATGAAAACTTGGTGGCTTT+AGG | + | chr1_3:4629581-4629600 | None:intergenic | 40.0% |
| TTCACTTGAAGATGTCACTG+CGG | + | chr1_3:4629735-4629754 | Msa0098620:intron | 40.0% | |
| CGCAAGTAAGCTTGTCTTTA+AGG | - | chr1_3:4629780-4629799 | Msa0098610:five_prime_UTR | 40.0% | |
| ACCTCAAAGACAGCTATGAG+TGG | + | chr1_3:4624212-4624231 | None:intergenic | 45.0% | |
| TGCTGGTGCAAATCTGTTGT+GGG | + | chr1_3:4625078-4625097 | None:intergenic | 45.0% | |
| TTGCTGGTGCAAATCTGTTG+TGG | + | chr1_3:4625079-4625098 | None:intergenic | 45.0% | |
| GAGTCATAGACGCAACTGAT+TGG | + | chr1_3:4625170-4625189 | None:intergenic | 45.0% | |
| TCAGGTGTGTCAGTAAGTCT+TGG | - | chr1_3:4625265-4625284 | Msa0098610:intron | 45.0% | |
| TCGATGGAAAAGGTGAATGC+CGG | + | chr1_3:4625465-4625484 | None:intergenic | 45.0% | |
| ! | CCGATGCATATAGAGAGTAC+TGG | - | chr1_3:4625571-4625590 | Msa0098610:intron | 45.0% |
| GTTTATGGAACCCAGTAACC+AGG | - | chr1_3:4625598-4625617 | Msa0098610:intron | 45.0% | |
| CAGATGTTGTCCTGGTTACT+GGG | + | chr1_3:4625611-4625630 | None:intergenic | 45.0% | |
| AAATGTCGCAGATGTTGTCC+TGG | + | chr1_3:4625619-4625638 | None:intergenic | 45.0% | |
| AGGACAACATCTGCGACATT+TGG | - | chr1_3:4625618-4625637 | Msa0098610:intron | 45.0% | |
| CTGTTGATGTGGATGGTAAC+GGG | + | chr1_3:4625754-4625773 | None:intergenic | 45.0% | |
| TGCTTCTCTGTTGATGTGGA+TGG | + | chr1_3:4625761-4625780 | None:intergenic | 45.0% | |
| TCCCCAAAGTCCAAATGAAG+AGG | + | chr1_3:4625846-4625865 | None:intergenic | 45.0% | |
| ATTTGAGTGGCACACTGAAC+TGG | - | chr1_3:4625889-4625908 | Msa0098610:CDS | 45.0% | |
| !! | ACACCAACTGTTGGTTCAGT+AGG | + | chr1_3:4626053-4626072 | None:intergenic | 45.0% |
| ! | TGAACCAACAGTTGGTGTGT+TGG | - | chr1_3:4626055-4626074 | Msa0098610:intron | 45.0% |
| ! | GAACCAACAGTTGGTGTGTT+GGG | - | chr1_3:4626056-4626075 | Msa0098610:intron | 45.0% |
| ! | AACCAACAGTTGGTGTGTTG+GGG | - | chr1_3:4626057-4626076 | Msa0098610:intron | 45.0% |
| GCAGATGATGAAATTCAGGG+TGG | - | chr1_3:4626130-4626149 | Msa0098610:intron | 45.0% | |
| AATTCAGGGTGGAAGAGTCT+TGG | - | chr1_3:4626141-4626160 | Msa0098610:intron | 45.0% | |
| CCATCCTCAGAAAGAAGCAA+CGG | + | chr1_3:4626254-4626273 | None:intergenic | 45.0% | |
| ATATACGCTGGGTTTCAACC+AGG | - | chr1_3:4626399-4626418 | Msa0098610:intron | 45.0% | |
| TATACGCTGGGTTTCAACCA+GGG | - | chr1_3:4626400-4626419 | Msa0098610:intron | 45.0% | |
| CGACTTCAACCTTGAGGATA+AGG | + | chr1_3:4626460-4626479 | None:intergenic | 45.0% | |
| !! | AACAGTTGGTGAGGCAACTT+GGG | + | chr1_3:4626514-4626533 | None:intergenic | 45.0% |
| ! | ACAAGACAGAACAGTTGGTG+AGG | + | chr1_3:4626523-4626542 | None:intergenic | 45.0% |
| CAGTGACAAGACAGAACAGT+TGG | + | chr1_3:4626528-4626547 | None:intergenic | 45.0% | |
| TGTCACTGTATTCGAGCTTG+AGG | - | chr1_3:4626540-4626559 | Msa0098610:intron | 45.0% | |
| CTCTGATGTACACAACCTTG+TGG | - | chr1_3:4626703-4626722 | Msa0098610:intron | 45.0% | |
| GTGACCAGAACCAAAAGAAG+AGG | + | chr1_3:4626810-4626829 | None:intergenic | 45.0% | |
| TTTCCATCCTTATGCCCCAA+TGG | - | chr1_3:4627932-4627951 | Msa0098610:intron | 45.0% | |
| CTCTATGACCTGAGACAAAC+AGG | - | chr1_3:4628075-4628094 | Msa0098610:intron | 45.0% | |
| AACAGGGTTTATTGAGCCAG+AGG | - | chr1_3:4628092-4628111 | Msa0098610:intron | 45.0% | |
| ACTACTGAACTCACTTCCTC+TGG | + | chr1_3:4628111-4628130 | None:intergenic | 45.0% | |
| !! | GTGTCACTTTGTCATCTTCC+AGG | - | chr1_3:4629372-4629391 | Msa0098610:intron | 45.0% |
| !! | TGGCTTTAGGGTATGATTGC+AGG | + | chr1_3:4629568-4629587 | None:intergenic | 45.0% |
| !! | AAACAATAATAATAAATATA+AGG | + | chr1_3:4624685-4624704 | None:intergenic | 5.0% |
| TACAGGGGAATGAGTAGGCA+TGG | + | chr1_3:4624048-4624067 | None:intergenic | 50.0% | |
| GCCACTCATAGCTGTCTTTG+AGG | - | chr1_3:4624208-4624227 | Msa0098610:three_prime_UTR | 50.0% | |
| TGCGTCTATGACTCTATCGC+CGG | - | chr1_3:4625176-4625195 | Msa0098610:CDS | 50.0% | |
| ATATCGTCAGAGAGGACCAC+CGG | + | chr1_3:4625198-4625217 | None:intergenic | 50.0% | |
| CAGCGATGATATCGTCAGAG+AGG | + | chr1_3:4625206-4625225 | None:intergenic | 50.0% | |
| CTCTGACGATATCATCGCTG+AGG | - | chr1_3:4625206-4625225 | Msa0098610:intron | 50.0% | |
| CAAAGGCTTGATCAGGGATG+AGG | + | chr1_3:4625296-4625315 | None:intergenic | 50.0% | |
| CACATCACAGATCTCACACC+AGG | - | chr1_3:4625375-4625394 | Msa0098610:intron | 50.0% | |
| CGTATGGTTGGCACATGCAA+TGG | - | chr1_3:4625519-4625538 | Msa0098610:intron | 50.0% | |
| GCAGATGTTGTCCTGGTTAC+TGG | + | chr1_3:4625612-4625631 | None:intergenic | 50.0% | |
| ! | AATCAGTACTTGCTGCCTCG+TGG | - | chr1_3:4626011-4626030 | Msa0098610:intron | 50.0% |
| GGAACTTCCTCAAAACCACG+AGG | + | chr1_3:4626029-4626048 | None:intergenic | 50.0% | |
| !! | CCAACTGTTGGTTCAGTAGG+TGG | + | chr1_3:4626050-4626069 | None:intergenic | 50.0% |
| CCACCTACTGAACCAACAGT+TGG | - | chr1_3:4626047-4626066 | Msa0098610:intron | 50.0% | |
| ! | ACCAACAGTTGGTGTGTTGG+GGG | - | chr1_3:4626058-4626077 | Msa0098610:intron | 50.0% |
| GAAAGAAGCAACGGCACCAA+CGG | + | chr1_3:4626245-4626264 | None:intergenic | 50.0% | |
| ! | CCGTTGCTTCTTTCTGAGGA+TGG | - | chr1_3:4626251-4626270 | Msa0098610:CDS | 50.0% |
| GTTTCCCGACTTCAACCTTG+AGG | + | chr1_3:4626466-4626485 | None:intergenic | 50.0% | |
| GTCGGGAAACTGCTACTGAA+TGG | - | chr1_3:4626476-4626495 | Msa0098610:CDS | 50.0% | |
| !! | GAACAGTTGGTGAGGCAACT+TGG | + | chr1_3:4626515-4626534 | None:intergenic | 50.0% |
| CATCCATTGGGGCATAAGGA+TGG | + | chr1_3:4627938-4627957 | None:intergenic | 50.0% | |
| CACATAAGCCGCATCGCTTT+AGG | - | chr1_3:4628516-4628535 | Msa0098610:intron | 50.0% | |
| AAACGCAGTGGTGATATCCC+TGG | + | chr1_3:4629393-4629412 | None:intergenic | 50.0% | |
| GTCTATGACTCTATCGCCGG+TGG | - | chr1_3:4625179-4625198 | Msa0098610:CDS | 55.0% | |
| TGGCGCATGGAGTAAGGAAC+AGG | + | chr1_3:4625429-4625448 | None:intergenic | 55.0% | |
| !! | CTTGCTGCCTCGTGGTTTTG+AGG | - | chr1_3:4626019-4626038 | Msa0098610:intron | 55.0% |
| ! | CCAACAGTTGGTGTGTTGGG+GGG | - | chr1_3:4626059-4626078 | Msa0098610:intron | 55.0% |
| !! | GGTGCCGTTGCTTCTTTCTG+AGG | - | chr1_3:4626247-4626266 | Msa0098610:CDS | 55.0% |
| TGAGGCAACTTGGGAGGACA+AGG | + | chr1_3:4626505-4626524 | None:intergenic | 55.0% | |
| !! | AGTTGGTGAGGCAACTTGGG+AGG | + | chr1_3:4626511-4626530 | None:intergenic | 55.0% |
| TCGCTGACGATGCATCAGCT+TGG | - | chr1_3:4626644-4626663 | Msa0098610:intron | 55.0% | |
| CGCTGACGATGCATCAGCTT+GGG | - | chr1_3:4626645-4626664 | Msa0098610:intron | 55.0% | |
| GCTGACGATGCATCAGCTTG+GGG | - | chr1_3:4626646-4626665 | Msa0098610:intron | 55.0% | |
| GATGGAAAACACTGAGCGCG+TGG | + | chr1_3:4627920-4627939 | None:intergenic | 55.0% | |
| TCTCACACCAGGCGACTCGT+CGG | - | chr1_3:4625386-4625405 | Msa0098610:intron | 60.0% | |
| CCCCCCAACACACCAACTGT+TGG | + | chr1_3:4626062-4626081 | None:intergenic | 60.0% | |
| CTGTCATCCGACGAGTCGCC+TGG | + | chr1_3:4625396-4625415 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 4623880 | 4629909 | 4623880 | ID=Msa0098610;Name=Msa0098610 |
| chr1_3 | mRNA | 4623880 | 4629909 | 4623880 | ID=Msa0098610-mRNA-1;Parent=Msa0098610;Name=Msa0098610-mRNA-1;_AED=0.12;_eAED=0.12;_QI=167|0.77|0.9|1|0.88|0.9|10|461|269 |
| chr1_3 | exon | 4623880 | 4624395 | 4623880 | ID=Msa0098610-mRNA-1:exon:1640;Parent=Msa0098610-mRNA-1 |
| chr1_3 | exon | 4624935 | 4625047 | 4624935 | ID=Msa0098610-mRNA-1:exon:1639;Parent=Msa0098610-mRNA-1 |
| chr1_3 | exon | 4625123 | 4625203 | 4625123 | ID=Msa0098610-mRNA-1:exon:1638;Parent=Msa0098610-mRNA-1 |
| chr1_3 | exon | 4625673 | 4625725 | 4625673 | ID=Msa0098610-mRNA-1:exon:1637;Parent=Msa0098610-mRNA-1 |
| chr1_3 | exon | 4625820 | 4625928 | 4625820 | ID=Msa0098610-mRNA-1:exon:1636;Parent=Msa0098610-mRNA-1 |
| chr1_3 | exon | 4626239 | 4626298 | 4626239 | ID=Msa0098610-mRNA-1:exon:1635;Parent=Msa0098610-mRNA-1 |
| chr1_3 | exon | 4626415 | 4626496 | 4626415 | ID=Msa0098610-mRNA-1:exon:1634;Parent=Msa0098610-mRNA-1 |
| chr1_3 | exon | 4629209 | 4629269 | 4629209 | ID=Msa0098610-mRNA-1:exon:1633;Parent=Msa0098610-mRNA-1 |
| chr1_3 | exon | 4629448 | 4629625 | 4629448 | ID=Msa0098610-mRNA-1:exon:1632;Parent=Msa0098610-mRNA-1 |
| chr1_3 | exon | 4629725 | 4629909 | 4629725 | ID=Msa0098610-mRNA-1:exon:1631;Parent=Msa0098610-mRNA-1 |
| chr1_3 | five_prime_UTR | 4629743 | 4629909 | 4629743 | ID=Msa0098610-mRNA-1:five_prime_utr;Parent=Msa0098610-mRNA-1 |
| chr1_3 | CDS | 4629725 | 4629742 | 4629725 | ID=Msa0098610-mRNA-1:cds;Parent=Msa0098610-mRNA-1 |
| chr1_3 | CDS | 4629448 | 4629625 | 4629448 | ID=Msa0098610-mRNA-1:cds;Parent=Msa0098610-mRNA-1 |
| chr1_3 | CDS | 4629209 | 4629269 | 4629209 | ID=Msa0098610-mRNA-1:cds;Parent=Msa0098610-mRNA-1 |
| chr1_3 | CDS | 4626415 | 4626496 | 4626415 | ID=Msa0098610-mRNA-1:cds;Parent=Msa0098610-mRNA-1 |
| chr1_3 | CDS | 4626239 | 4626298 | 4626239 | ID=Msa0098610-mRNA-1:cds;Parent=Msa0098610-mRNA-1 |
| chr1_3 | CDS | 4625820 | 4625928 | 4625820 | ID=Msa0098610-mRNA-1:cds;Parent=Msa0098610-mRNA-1 |
| chr1_3 | CDS | 4625673 | 4625725 | 4625673 | ID=Msa0098610-mRNA-1:cds;Parent=Msa0098610-mRNA-1 |
| chr1_3 | CDS | 4625123 | 4625203 | 4625123 | ID=Msa0098610-mRNA-1:cds;Parent=Msa0098610-mRNA-1 |
| chr1_3 | CDS | 4624935 | 4625047 | 4624935 | ID=Msa0098610-mRNA-1:cds;Parent=Msa0098610-mRNA-1 |
| chr1_3 | CDS | 4624341 | 4624395 | 4624341 | ID=Msa0098610-mRNA-1:cds;Parent=Msa0098610-mRNA-1 |
| chr1_3 | three_prime_UTR | 4623880 | 4624340 | 4623880 | ID=Msa0098610-mRNA-1:three_prime_utr;Parent=Msa0098610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
