Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0184370 | XP_003612350.1 | 95.166 | 331 | 15 | 1 | 1 | 331 | 1 | 330 | 0.0 | 641 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0184370 | sp|O81791|RKD5_ARATH | 50.305 | 328 | 135 | 9 | 1 | 313 | 40 | 354 | 4.23e-91 | 279 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0184370 | G7K041 | 95.166 | 331 | 15 | 1 | 1 | 331 | 1 | 330 | 0.0 | 641 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0184370 | TF | RWP-RK |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0184370 | Msa0801330 | 0.820679 | 6.040063e-53 | -8.615850e-47 |
| Msa0184370 | Msa0839020 | 0.988268 | 2.331909e-173 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0184370 | MtrunA17_Chr5g0406901 | 95.166 | 331 | 15 | 1 | 1 | 331 | 1 | 330 | 0.0 | 641 |
| Msa0184370 | MtrunA17_Chr3g0092141 | 37.037 | 135 | 77 | 2 | 181 | 314 | 38 | 165 | 1.66e-23 | 95.9 |
| Msa0184370 | MtrunA17_Chr4g0060761 | 38.760 | 129 | 75 | 1 | 191 | 319 | 145 | 269 | 5.82e-23 | 96.3 |
| Msa0184370 | MtrunA17_Chr3g0127001 | 38.400 | 125 | 59 | 2 | 190 | 314 | 148 | 254 | 9.68e-21 | 90.1 |
| Msa0184370 | MtrunA17_Chr1g0182631 | 38.346 | 133 | 62 | 3 | 182 | 314 | 115 | 227 | 1.49e-20 | 89.0 |
| Msa0184370 | MtrunA17_Chr3g0136081 | 48.276 | 87 | 40 | 2 | 199 | 283 | 414 | 497 | 1.29e-13 | 71.6 |
| Msa0184370 | MtrunA17_Chr3g0143921 | 45.122 | 82 | 41 | 2 | 177 | 256 | 570 | 649 | 9.57e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0184370 | AT4G35590.1 | 50.305 | 328 | 135 | 9 | 1 | 313 | 40 | 354 | 4.30e-92 | 279 |
| Msa0184370 | AT4G35590.2 | 50.637 | 314 | 127 | 9 | 15 | 313 | 4 | 304 | 6.97e-89 | 269 |
| Msa0184370 | AT1G18790.1 | 44.628 | 121 | 61 | 3 | 194 | 312 | 120 | 236 | 1.22e-23 | 98.6 |
| Msa0184370 | AT1G74480.1 | 46.087 | 115 | 57 | 2 | 199 | 311 | 131 | 242 | 1.24e-23 | 99.0 |
| Msa0184370 | AT5G66990.1 | 42.727 | 110 | 59 | 2 | 206 | 314 | 164 | 270 | 2.18e-21 | 92.4 |
| Msa0184370 | AT5G53040.1 | 42.609 | 115 | 53 | 1 | 200 | 314 | 147 | 248 | 3.41e-21 | 91.7 |
| Msa0184370 | AT5G16100.2 | 50.000 | 64 | 32 | 0 | 193 | 256 | 346 | 409 | 1.31e-13 | 71.6 |
Find 64 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTCTTCTTCATCTTCA+TGG | 0.181413 | 1_4:+73781206 | Msa0184370:exon |
| AAAGATTACTTTATCAGATT+TGG | 0.267461 | 1_4:+73783468 | Msa0184370:CDS |
| AAAAGGAAGTGCAGAGAATT+TGG | 0.277802 | 1_4:+73783556 | Msa0184370:CDS |
| AGAAGACGAGGCTGAGTTAC+TGG | 0.328138 | 1_4:+73783125 | Msa0184370:CDS |
| CAGTCTCATTCATGATCTTC+AGG | 0.329225 | 1_4:+73783618 | Msa0184370:CDS |
| TTCTTTGACGCTTCTGCAAT+TGG | 0.345585 | 1_4:-73783508 | None:intergenic |
| TTTGGAATGGCCTGAAGCTT+TGG | 0.353863 | 1_4:-73782934 | None:intergenic |
| GATTTCAACAATCTAAGAAT+TGG | 0.356192 | 1_4:-73781552 | None:intergenic |
| TTTCAGGAATCCAAAGCTTC+AGG | 0.357774 | 1_4:+73782924 | Msa0184370:intron |
| GAGCTCTGCAAGGGAAGAAT+TGG | 0.370187 | 1_4:+73783023 | Msa0184370:CDS |
| ATACCTTGTAACCAACAAAA+AGG | 0.370413 | 1_4:-73781676 | None:intergenic |
| TGGAGATCATTAAGCAGGTT+TGG | 0.377748 | 1_4:-73782952 | None:intergenic |
| GTATTCCTCGCTGGCCTCAT+AGG | 0.379146 | 1_4:+73783578 | Msa0184370:CDS |
| AAGGGTATAAGAATGGAGTT+TGG | 0.381031 | 1_4:+73781598 | Msa0184370:CDS |
| TGATGCTAATTGCTAGGTTT+AGG | 0.384292 | 1_4:-73784379 | None:intergenic |
| AGTCTTGCCTGTGCTTAATC+AGG | 0.387896 | 1_4:+73783080 | Msa0184370:CDS |
| TCTTCCCTTGCAGAGCTCTC+TGG | 0.396713 | 1_4:-73783018 | None:intergenic |
| CATAGAGAAGAGGCCCTTCA+TGG | 0.404040 | 1_4:+73784258 | Msa0184370:CDS |
| TTTCTCCTCCATCACATTCA+CGG | 0.441238 | 1_4:-73781467 | None:intergenic |
| AAATTGAGACCAAGAGATTC+AGG | 0.445679 | 1_4:+73784287 | Msa0184370:CDS |
| CGTCAAAGAATCTAAATGTT+GGG | 0.449206 | 1_4:+73783521 | Msa0184370:CDS |
| AAAGATGTTGGAAAGTGAAA+AGG | 0.459498 | 1_4:+73784231 | Msa0184370:CDS |
| TTGGGCTTACTGTTCTCAAA+AGG | 0.466425 | 1_4:+73783539 | Msa0184370:CDS |
| TTGCCTTCTTATAACTGCCA+TGG | 0.468291 | 1_4:-73784209 | None:intergenic |
| GAAGATGAAGAAGAAGAAGT+TGG | 0.474686 | 1_4:-73781202 | None:intergenic |
| TCAGCCTCGTCTTCTTCATA+AGG | 0.476498 | 1_4:-73783117 | None:intergenic |
| AACATCTTGCCTGAATCTCT+TGG | 0.476779 | 1_4:-73784296 | None:intergenic |
| CTCAATTTGTATGTCCATGA+AGG | 0.479972 | 1_4:-73784272 | None:intergenic |
| GAGAATTTGGTATTCCTCGC+TGG | 0.487057 | 1_4:+73783569 | Msa0184370:CDS |
| GCAGGAAGAGGCAAAACATC+AGG | 0.497528 | 1_4:+73784165 | Msa0184370:intron |
| TATAAGAAGGCAAAAGATGT+TGG | 0.505266 | 1_4:+73784219 | Msa0184370:CDS |
| ATCATTAAGCAGGTTTGGAA+TGG | 0.506660 | 1_4:-73782947 | None:intergenic |
| AATTGGCATATCAAAGTACT+TGG | 0.507062 | 1_4:-73783491 | None:intergenic |
| AGAAGTTGGAGAAAGCATGA+AGG | 0.512290 | 1_4:-73781188 | None:intergenic |
| TGAATGTGATGGAGGAGAAA+AGG | 0.512445 | 1_4:+73781470 | Msa0184370:CDS |
| ATTGCATGTACCTGGTTGAA+TGG | 0.520241 | 1_4:-73781265 | None:intergenic |
| TCATGTGGAGATCATTAAGC+AGG | 0.525296 | 1_4:-73782957 | None:intergenic |
| AATCTTTGCAACATGGTCAC+TGG | 0.527182 | 1_4:-73783452 | None:intergenic |
| TTGGAATGTGAGAAAATTGA+GGG | 0.529395 | 1_4:-73781653 | None:intergenic |
| ATACAAGTTGGAACCGAAGA+AGG | 0.529415 | 1_4:+73782981 | Msa0184370:CDS |
| ATCAGATGATGCTAATTGCT+AGG | 0.533299 | 1_4:-73784385 | None:intergenic |
| AGAGGCAAAACATCAGGAAA+GGG | 0.535237 | 1_4:+73784171 | Msa0184370:CDS |
| GCGTCAAAGAATCTAAATGT+TGG | 0.551834 | 1_4:+73783520 | Msa0184370:CDS |
| GTTGGAATGTGAGAAAATTG+AGG | 0.552092 | 1_4:-73781654 | None:intergenic |
| CAGCCATGGCAGTTATAAGA+AGG | 0.552518 | 1_4:+73784206 | Msa0184370:CDS |
| TCTCCACATGATATACAAGT+TGG | 0.555482 | 1_4:+73782969 | Msa0184370:CDS |
| AAGAGGCAAAACATCAGGAA+AGG | 0.561722 | 1_4:+73784170 | Msa0184370:CDS |
| GTTCCAACTTGTATATCATG+TGG | 0.569302 | 1_4:-73782972 | None:intergenic |
| TTGAGATCCTGATTAAGCAC+AGG | 0.580889 | 1_4:-73783087 | None:intergenic |
| GAGAAGAAGAGTAATGAGCG+AGG | 0.586084 | 1_4:-73781232 | None:intergenic |
| AAAAGGAAAACATAGAGAAG+AGG | 0.595516 | 1_4:+73784248 | Msa0184370:CDS |
| GGAGGATAAAGATGCAGCCA+TGG | 0.600209 | 1_4:+73784192 | Msa0184370:CDS |
| AGTGATTTGATCTTCCTATG+AGG | 0.604696 | 1_4:-73783592 | None:intergenic |
| TCAATTTGTATGTCCATGAA+GGG | 0.616363 | 1_4:-73784271 | None:intergenic |
| GGCAAAACATCAGGAAAGGG+AGG | 0.624378 | 1_4:+73784174 | Msa0184370:CDS |
| TACACCAGAGAGCTCTGCAA+GGG | 0.628005 | 1_4:+73783014 | Msa0184370:CDS |
| CATGTGTACCGTGAATGTGA+TGG | 0.635852 | 1_4:+73781459 | Msa0184370:CDS |
| TTCAACAACACCATTCAACC+AGG | 0.645034 | 1_4:+73781255 | Msa0184370:CDS |
| ATACACCAGAGAGCTCTGCA+AGG | 0.645197 | 1_4:+73783013 | Msa0184370:CDS |
| TCTTCCTTATGAAGAAGACG+AGG | 0.662936 | 1_4:+73783113 | Msa0184370:CDS |
| ATAAAGTAATCTTTGCAACA+TGG | 0.664575 | 1_4:-73783459 | None:intergenic |
| ATCTTCCTATGAGGCCAGCG+AGG | 0.669880 | 1_4:-73783583 | None:intergenic |
| TCTGCAAGGGAAGAATTGGA+AGG | 0.677605 | 1_4:+73783027 | Msa0184370:CDS |
| GTGTACCGTGAATGTGATGG+AGG | 0.689782 | 1_4:+73781462 | Msa0184370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATACACTTATTTTATTAAT+AGG | + | chr1_4:73783276-73783295 | Msa0184370:intron | 10.0% |
| !! | CATAATAATAAATAAAAAAG+TGG | - | chr1_4:73783651-73783670 | None:intergenic | 10.0% |
| !! | ACAATTCAAATTCAATAAAA+GGG | - | chr1_4:73781715-73781734 | None:intergenic | 15.0% |
| !! | AACAATTCAAATTCAATAAA+AGG | - | chr1_4:73781716-73781735 | None:intergenic | 15.0% |
| !! | ATTATATGATTATGTATTCT+GGG | + | chr1_4:73781743-73781762 | Msa0184370:intron | 15.0% |
| !!! | TATTTTATTAATAGGAATCA+TGG | + | chr1_4:73783284-73783303 | Msa0184370:intron | 15.0% |
| !! | TTATAGACCAAATAATTTAT+AGG | - | chr1_4:73784057-73784076 | None:intergenic | 15.0% |
| !!! | TTTTTTGTTGTTTTTGTTTG+TGG | + | chr1_4:73781378-73781397 | Msa0184370:intron | 20.0% |
| !!! | TTTTTGTTGTTTTTGTTTGT+GGG | + | chr1_4:73781379-73781398 | Msa0184370:intron | 20.0% |
| !! | GATTATATGATTATGTATTC+TGG | + | chr1_4:73781742-73781761 | Msa0184370:intron | 20.0% |
| !! | AATACAAATTGATTAAAGCA+GGG | - | chr1_4:73782224-73782243 | None:intergenic | 20.0% |
| !! | ACATTTATATATCATTCACA+GGG | - | chr1_4:73782298-73782317 | None:intergenic | 20.0% |
| !! | TACATTTATATATCATTCAC+AGG | - | chr1_4:73782299-73782318 | None:intergenic | 20.0% |
| !!! | TATTGATTTCTTTATGTATG+TGG | + | chr1_4:73782483-73782502 | Msa0184370:intron | 20.0% |
| !!! | GAATATGTTTTTTGATTTCT+TGG | + | chr1_4:73782866-73782885 | Msa0184370:intron | 20.0% |
| !! | TAAAATAAGTGTATAAAGCT+AGG | - | chr1_4:73783271-73783290 | None:intergenic | 20.0% |
| !!! | TTTTTTAGGAAAGAAAAAGA+GGG | + | chr1_4:73783426-73783445 | Msa0184370:CDS | 20.0% |
| !! | AAAGATTACTTTATCAGATT+TGG | + | chr1_4:73783468-73783487 | Msa0184370:CDS | 20.0% |
| !! | CTAAATATTAGTTCAATAGT+TGG | - | chr1_4:73783746-73783765 | None:intergenic | 20.0% |
| !! | TATTTCAACCAAATACTATA+AGG | - | chr1_4:73783807-73783826 | None:intergenic | 20.0% |
| !! | ATGAAAATTTATAGTATCTG+AGG | + | chr1_4:73783832-73783851 | Msa0184370:intron | 20.0% |
| !! | TTGTAACTTAAACAAAATCA+CGG | - | chr1_4:73783958-73783977 | None:intergenic | 20.0% |
| !!! | TTGAAAAACAGAATTTTCTA+CGG | + | chr1_4:73784347-73784366 | Msa0184370:CDS | 20.0% |
| !!! | TTTTGTTGTTTTTGTTTGTG+GGG | + | chr1_4:73781380-73781399 | Msa0184370:intron | 25.0% |
| ! | GATTTCAACAATCTAAGAAT+TGG | - | chr1_4:73781555-73781574 | None:intergenic | 25.0% |
| !!! | TTTCTGAAGAGATTTTTGAA+GGG | + | chr1_4:73781580-73781599 | Msa0184370:CDS | 25.0% |
| !!! | ATTTTTGAAGGGTATAAGAA+TGG | + | chr1_4:73781591-73781610 | Msa0184370:CDS | 25.0% |
| !!! | GTACCAATGTTTTTAAATAG+CGG | + | chr1_4:73781807-73781826 | Msa0184370:intron | 25.0% |
| ! | CAATACAAATTGATTAAAGC+AGG | - | chr1_4:73782225-73782244 | None:intergenic | 25.0% |
| ! | AGTTATCTAATCTAACAAAC+AGG | - | chr1_4:73782441-73782460 | None:intergenic | 25.0% |
| !!! | CATGTTCTTCTTTAATTTTC+AGG | + | chr1_4:73782908-73782927 | Msa0184370:intron | 25.0% |
| ! | GACATAATTAACTCAACATT+AGG | - | chr1_4:73783360-73783379 | None:intergenic | 25.0% |
| !!! | GTTTTTTAGGAAAGAAAAAG+AGG | + | chr1_4:73783425-73783444 | Msa0184370:CDS | 25.0% |
| ! | ATAAAGTAATCTTTGCAACA+TGG | - | chr1_4:73783462-73783481 | None:intergenic | 25.0% |
| !! | GTAAATCATAGAAGTTTTCT+TGG | - | chr1_4:73783721-73783740 | None:intergenic | 25.0% |
| ! | ATTGCAAACCTTATAGTATT+TGG | + | chr1_4:73783796-73783815 | Msa0184370:intron | 25.0% |
| ! | GTACAGAAAAGATTTGTATA+AGG | - | chr1_4:73783875-73783894 | None:intergenic | 25.0% |
| ! | ACTGAAGCCTATAAATTATT+TGG | + | chr1_4:73784047-73784066 | Msa0184370:intron | 25.0% |
| !!! | ATTCTGTTTTTCAATAACTC+TGG | - | chr1_4:73784341-73784360 | None:intergenic | 25.0% |
| CCAAAAACAAACGAAAAAAG+CGG | + | chr1_4:73781105-73781124 | Msa0184370:five_prime_UTR | 30.0% | |
| !! | GTTTCTGAAGAGATTTTTGA+AGG | + | chr1_4:73781579-73781598 | Msa0184370:CDS | 30.0% |
| TTGGAATGTGAGAAAATTGA+GGG | - | chr1_4:73781656-73781675 | None:intergenic | 30.0% | |
| ATACCTTGTAACCAACAAAA+AGG | - | chr1_4:73781679-73781698 | None:intergenic | 30.0% | |
| ! | TTATGTATTCTGGGTTTGTT+TGG | + | chr1_4:73781752-73781771 | Msa0184370:intron | 30.0% |
| TAGCCGCTATTTAAAAACAT+TGG | - | chr1_4:73781813-73781832 | None:intergenic | 30.0% | |
| ! | TTTTTAAATAGCGGCTATAG+CGG | + | chr1_4:73781816-73781835 | Msa0184370:intron | 30.0% |
| TTATACAAAACAGTGTATCG+TGG | - | chr1_4:73781889-73781908 | None:intergenic | 30.0% | |
| TTGTGAAATAGCAACTATAG+CGG | + | chr1_4:73781913-73781932 | Msa0184370:intron | 30.0% | |
| !! | GTTGTTTTCATAAGCTATCT+TGG | - | chr1_4:73782076-73782095 | None:intergenic | 30.0% |
| GTTCAAAAATCAGTTACCAA+TGG | - | chr1_4:73782509-73782528 | None:intergenic | 30.0% | |
| TTTGGTGAAGTTAGAATTTG+AGG | + | chr1_4:73782734-73782753 | Msa0184370:intron | 30.0% | |
| TTGGTGAAGTTAGAATTTGA+GGG | + | chr1_4:73782735-73782754 | Msa0184370:intron | 30.0% | |
| ATTAAAGAAGAACATGACAG+AGG | - | chr1_4:73782904-73782923 | None:intergenic | 30.0% | |
| !! | ACAAATTTTGAAAGTTCAGC+AGG | + | chr1_4:73783156-73783175 | Msa0184370:CDS | 30.0% |
| GGAATAAAATGTTCAAAAGC+AGG | - | chr1_4:73783237-73783256 | None:intergenic | 30.0% | |
| ATTAGGAAGAAGTTATGCAT+TGG | - | chr1_4:73783343-73783362 | None:intergenic | 30.0% | |
| ! | AATTGGCATATCAAAGTACT+TGG | - | chr1_4:73783494-73783513 | None:intergenic | 30.0% |
| CGTCAAAGAATCTAAATGTT+GGG | + | chr1_4:73783521-73783540 | Msa0184370:CDS | 30.0% | |
| GTTGTCAATTAGCATATGTT+TGG | + | chr1_4:73783899-73783918 | Msa0184370:intron | 30.0% | |
| TATAAGAAGGCAAAAGATGT+TGG | + | chr1_4:73784219-73784238 | Msa0184370:CDS | 30.0% | |
| AAAGATGTTGGAAAGTGAAA+AGG | + | chr1_4:73784231-73784250 | Msa0184370:CDS | 30.0% | |
| AAAAGGAAAACATAGAGAAG+AGG | + | chr1_4:73784248-73784267 | Msa0184370:CDS | 30.0% | |
| TCAATTTGTATGTCCATGAA+GGG | - | chr1_4:73784274-73784293 | None:intergenic | 30.0% | |
| ! | AAAACAGAATTTTCTACGGT+TGG | + | chr1_4:73784351-73784370 | Msa0184370:CDS | 30.0% |
| !!! | CCGCTTTTTTCGTTTGTTTT+TGG | - | chr1_4:73781108-73781127 | None:intergenic | 35.0% |
| GAAGATGAAGAAGAAGAAGT+TGG | - | chr1_4:73781205-73781224 | None:intergenic | 35.0% | |
| CTTCTTCTTCTTCATCTTCA+TGG | + | chr1_4:73781206-73781225 | Msa0184370:exon | 35.0% | |
| !!! | TGTGGGGTGTTTTTTGTTTT+TGG | + | chr1_4:73781396-73781415 | Msa0184370:intron | 35.0% |
| !!! | GTGGGGTGTTTTTTGTTTTT+GGG | + | chr1_4:73781397-73781416 | Msa0184370:intron | 35.0% |
| !!! | TGGGGTGTTTTTTGTTTTTG+GGG | + | chr1_4:73781398-73781417 | Msa0184370:intron | 35.0% |
| !! | GAGTTTGTGTTTTCTGAGAA+TGG | + | chr1_4:73781504-73781523 | Msa0184370:CDS | 35.0% |
| ! | AAGGGTATAAGAATGGAGTT+TGG | + | chr1_4:73781598-73781617 | Msa0184370:CDS | 35.0% |
| GTTGGAATGTGAGAAAATTG+AGG | - | chr1_4:73781657-73781676 | None:intergenic | 35.0% | |
| ! | TCACATTCCAACCTTTTTGT+TGG | + | chr1_4:73781665-73781684 | Msa0184370:CDS | 35.0% |
| CTTGTAACCAACAAAAAGGT+TGG | - | chr1_4:73781675-73781694 | None:intergenic | 35.0% | |
| !! | CAACCTTTTTGTTGGTTACA+AGG | + | chr1_4:73781673-73781692 | Msa0184370:CDS | 35.0% |
| ! | GTTATAGTGCTATTGCATAG+CGG | + | chr1_4:73781840-73781859 | Msa0184370:intron | 35.0% |
| ! | CATAGCGGAATTTGAACAAA+CGG | + | chr1_4:73781855-73781874 | Msa0184370:intron | 35.0% |
| ACTAAGTTGTTTATCCTGAC+AGG | + | chr1_4:73782169-73782188 | Msa0184370:intron | 35.0% | |
| CTAAGTTGTTTATCCTGACA+GGG | + | chr1_4:73782170-73782189 | Msa0184370:intron | 35.0% | |
| TAAAGTCCCTACACAAGTAA+CGG | + | chr1_4:73782346-73782365 | Msa0184370:intron | 35.0% | |
| TTCTTTATGTATGTGGCCAT+TGG | + | chr1_4:73782490-73782509 | Msa0184370:intron | 35.0% | |
| !! | TGGTAACTGATTTTTGAACC+CGG | + | chr1_4:73782510-73782529 | Msa0184370:intron | 35.0% |
| TTTCGTAACTGTAAGGAATC+CGG | - | chr1_4:73782532-73782551 | None:intergenic | 35.0% | |
| GATTCCTTACAGTTACGAAA+TGG | + | chr1_4:73782532-73782551 | Msa0184370:intron | 35.0% | |
| GAAATGGTGCAGTAAATGTT+TGG | + | chr1_4:73782548-73782567 | Msa0184370:intron | 35.0% | |
| CTCGGATTTCAAATCGTATT+TGG | - | chr1_4:73782624-73782643 | None:intergenic | 35.0% | |
| AGGATGAAAATCAGACAACT+CGG | - | chr1_4:73782642-73782661 | None:intergenic | 35.0% | |
| ATCATTAAGCAGGTTTGGAA+TGG | - | chr1_4:73782950-73782969 | None:intergenic | 35.0% | |
| TCTCCACATGATATACAAGT+TGG | + | chr1_4:73782969-73782988 | Msa0184370:CDS | 35.0% | |
| GTTCCAACTTGTATATCATG+TGG | - | chr1_4:73782975-73782994 | None:intergenic | 35.0% | |
| ! | GTATCTTTTCGTTCCTTCTT+CGG | - | chr1_4:73782997-73783016 | None:intergenic | 35.0% |
| !!! | GCAAGACTTTTTTTAGTGGT+TGG | - | chr1_4:73783068-73783087 | None:intergenic | 35.0% |
| !!! | ACAGGCAAGACTTTTTTTAG+TGG | - | chr1_4:73783072-73783091 | None:intergenic | 35.0% |
| GAACAACGTGATAATTGACT+GGG | - | chr1_4:73783215-73783234 | None:intergenic | 35.0% | |
| TTGATAAAGTGAGTGTTTGC+AGG | + | chr1_4:73783403-73783422 | Msa0184370:intron | 35.0% | |
| !!! | TGAGTGTTTGCAGGTTTTTT+AGG | + | chr1_4:73783412-73783431 | Msa0184370:intron | 35.0% |
| GCGTCAAAGAATCTAAATGT+TGG | + | chr1_4:73783520-73783539 | Msa0184370:CDS | 35.0% | |
| ! | AAAAGGAAGTGCAGAGAATT+TGG | + | chr1_4:73783556-73783575 | Msa0184370:CDS | 35.0% |
| AGTGATTTGATCTTCCTATG+AGG | - | chr1_4:73783595-73783614 | None:intergenic | 35.0% | |
| ! | TATCTGAGGCTTCTTTAGAT+AGG | + | chr1_4:73783846-73783865 | Msa0184370:intron | 35.0% |
| ! | TAGCTTTTGTGCCAAAATCA+CGG | + | chr1_4:73783982-73784001 | Msa0184370:intron | 35.0% |
| GAGTTCACTTGAAGATTGTT+AGG | - | chr1_4:73784122-73784141 | None:intergenic | 35.0% | |
| GAGATGTTGCAATGTGTATA+AGG | - | chr1_4:73784144-73784163 | None:intergenic | 35.0% | |
| CTCAATTTGTATGTCCATGA+AGG | - | chr1_4:73784275-73784294 | None:intergenic | 35.0% | |
| AAATTGAGACCAAGAGATTC+AGG | + | chr1_4:73784287-73784306 | Msa0184370:CDS | 35.0% | |
| ! | AGAAGTTGGAGAAAGCATGA+AGG | - | chr1_4:73781191-73781210 | None:intergenic | 40.0% |
| TTCAACAACACCATTCAACC+AGG | + | chr1_4:73781255-73781274 | Msa0184370:CDS | 40.0% | |
| ATTGCATGTACCTGGTTGAA+TGG | - | chr1_4:73781268-73781287 | None:intergenic | 40.0% | |
| !!! | GGGGTGTTTTTTGTTTTTGG+GGG | + | chr1_4:73781399-73781418 | Msa0184370:intron | 40.0% |
| !!! | GGGTGTTTTTTGTTTTTGGG+GGG | + | chr1_4:73781400-73781419 | Msa0184370:intron | 40.0% |
| TTTCTCCTCCATCACATTCA+CGG | - | chr1_4:73781470-73781489 | None:intergenic | 40.0% | |
| ! | TGAATGTGATGGAGGAGAAA+AGG | + | chr1_4:73781470-73781489 | Msa0184370:CDS | 40.0% |
| TGATTAAAGCAGGGAAACCT+TGG | - | chr1_4:73782215-73782234 | None:intergenic | 40.0% | |
| GGTGTGTACTGTGTACAAAT+TGG | + | chr1_4:73782271-73782290 | Msa0184370:intron | 40.0% | |
| TTCGTAACTGTAAGGAATCC+GGG | - | chr1_4:73782531-73782550 | None:intergenic | 40.0% | |
| TGCACCATTTCGTAACTGTA+AGG | - | chr1_4:73782539-73782558 | None:intergenic | 40.0% | |
| GTGCAGTAAATGTTTGGCAT+TGG | + | chr1_4:73782554-73782573 | Msa0184370:intron | 40.0% | |
| TCATCCTACAGTTGCAATTG+CGG | + | chr1_4:73782655-73782674 | Msa0184370:intron | 40.0% | |
| AGTATGCTGTGGAACAGTTA+GGG | - | chr1_4:73782714-73782733 | None:intergenic | 40.0% | |
| AAGTATGCTGTGGAACAGTT+AGG | - | chr1_4:73782715-73782734 | None:intergenic | 40.0% | |
| ! | ACTGTTCCACAGCATACTTT+TGG | + | chr1_4:73782716-73782735 | Msa0184370:intron | 40.0% |
| ! | ACTTCACCAAAAGTATGCTG+TGG | - | chr1_4:73782725-73782744 | None:intergenic | 40.0% |
| GAAGTTAGAATTTGAGGGCA+TGG | + | chr1_4:73782740-73782759 | Msa0184370:intron | 40.0% | |
| AGAACATGACAGAGGAAGTT+AGG | - | chr1_4:73782896-73782915 | None:intergenic | 40.0% | |
| TTTCAGGAATCCAAAGCTTC+AGG | + | chr1_4:73782924-73782943 | Msa0184370:intron | 40.0% | |
| TGGAGATCATTAAGCAGGTT+TGG | - | chr1_4:73782955-73782974 | None:intergenic | 40.0% | |
| TCATGTGGAGATCATTAAGC+AGG | - | chr1_4:73782960-73782979 | None:intergenic | 40.0% | |
| ! | ATACAAGTTGGAACCGAAGA+AGG | + | chr1_4:73782981-73783000 | Msa0184370:CDS | 40.0% |
| TTGAGATCCTGATTAAGCAC+AGG | - | chr1_4:73783090-73783109 | None:intergenic | 40.0% | |
| TCTTCCTTATGAAGAAGACG+AGG | + | chr1_4:73783113-73783132 | Msa0184370:CDS | 40.0% | |
| ! | GGAGCATTTGAATCTAAACC+CGG | - | chr1_4:73783194-73783213 | None:intergenic | 40.0% |
| GGAACAACGTGATAATTGAC+TGG | - | chr1_4:73783216-73783235 | None:intergenic | 40.0% | |
| TAAAGCTAGGACTGAGTTGT+TGG | - | chr1_4:73783258-73783277 | None:intergenic | 40.0% | |
| AATCTTTGCAACATGGTCAC+TGG | - | chr1_4:73783455-73783474 | None:intergenic | 40.0% | |
| TTCTTTGACGCTTCTGCAAT+TGG | - | chr1_4:73783511-73783530 | None:intergenic | 40.0% | |
| TTGGGCTTACTGTTCTCAAA+AGG | + | chr1_4:73783539-73783558 | Msa0184370:CDS | 40.0% | |
| CAGTCTCATTCATGATCTTC+AGG | + | chr1_4:73783618-73783637 | Msa0184370:CDS | 40.0% | |
| TATAGGCTTCAGTGCATGTT+TGG | - | chr1_4:73784040-73784059 | None:intergenic | 40.0% | |
| AAGAGGCAAAACATCAGGAA+AGG | + | chr1_4:73784170-73784189 | Msa0184370:CDS | 40.0% | |
| AGAGGCAAAACATCAGGAAA+GGG | + | chr1_4:73784171-73784190 | Msa0184370:CDS | 40.0% | |
| TTGCCTTCTTATAACTGCCA+TGG | - | chr1_4:73784212-73784231 | None:intergenic | 40.0% | |
| AACATCTTGCCTGAATCTCT+TGG | - | chr1_4:73784299-73784318 | None:intergenic | 40.0% | |
| !! | GGCAAGATGTTTTCAAGAGA+AGG | + | chr1_4:73784308-73784327 | Msa0184370:CDS | 40.0% |
| GAGAAGAAGAGTAATGAGCG+AGG | - | chr1_4:73781235-73781254 | None:intergenic | 45.0% | |
| GGTATTGCATTGCATGTACC+TGG | - | chr1_4:73781276-73781295 | None:intergenic | 45.0% | |
| CATGTGTACCGTGAATGTGA+TGG | + | chr1_4:73781459-73781478 | Msa0184370:CDS | 45.0% | |
| TTGGTCAGGCCTAAAAGCTA+AGG | - | chr1_4:73782196-73782215 | None:intergenic | 45.0% | |
| !! | TTAGCTTTTAGGCCTGACCA+AGG | + | chr1_4:73782195-73782214 | Msa0184370:intron | 45.0% |
| GATTCGCCGTTACTTGTGTA+GGG | - | chr1_4:73782355-73782374 | None:intergenic | 45.0% | |
| TGATTCGCCGTTACTTGTGT+AGG | - | chr1_4:73782356-73782375 | None:intergenic | 45.0% | |
| ! | TTGCTGCAAATGTTGACTGC+AGG | + | chr1_4:73782678-73782697 | Msa0184370:intron | 45.0% |
| ! | TGCTGCAAATGTTGACTGCA+GGG | + | chr1_4:73782679-73782698 | Msa0184370:intron | 45.0% |
| CTGTGGAACAGTTAGGGAAA+TGG | - | chr1_4:73782708-73782727 | None:intergenic | 45.0% | |
| ! | TTGAGGGCATGGTTCAACAA+TGG | + | chr1_4:73782751-73782770 | Msa0184370:intron | 45.0% |
| ! | TTTGGAATGGCCTGAAGCTT+TGG | - | chr1_4:73782937-73782956 | None:intergenic | 45.0% |
| TCTGCAAGGGAAGAATTGGA+AGG | + | chr1_4:73783027-73783046 | Msa0184370:CDS | 45.0% | |
| AGTCTTGCCTGTGCTTAATC+AGG | + | chr1_4:73783080-73783099 | Msa0184370:CDS | 45.0% | |
| TCAGCCTCGTCTTCTTCATA+AGG | - | chr1_4:73783120-73783139 | None:intergenic | 45.0% | |
| CAGCAGGTTTGAAAGTTCAC+CGG | + | chr1_4:73783172-73783191 | Msa0184370:intron | 45.0% | |
| AGCAGGTTTGAAAGTTCACC+GGG | + | chr1_4:73783173-73783192 | Msa0184370:intron | 45.0% | |
| GAGAATTTGGTATTCCTCGC+TGG | + | chr1_4:73783569-73783588 | Msa0184370:CDS | 45.0% | |
| ! | CTTTTGTGCCAAAATCACGG+TGG | + | chr1_4:73783985-73784004 | Msa0184370:intron | 45.0% |
| GCTTCAGTGCATGTTTGGAT+TGG | - | chr1_4:73784035-73784054 | None:intergenic | 45.0% | |
| ACACATTGCAACATCTCTGC+AGG | + | chr1_4:73784147-73784166 | Msa0184370:intron | 45.0% | |
| CAGCCATGGCAGTTATAAGA+AGG | + | chr1_4:73784206-73784225 | Msa0184370:CDS | 45.0% | |
| !! | AAATTGAAAAAATAAAAAAT+GGG | - | chr1_4:73781297-73781316 | None:intergenic | 5.0% |
| !! | AAAATTGAAAAAATAAAAAA+TGG | - | chr1_4:73781298-73781317 | None:intergenic | 5.0% |
| !!! | AAAATTTGATTTTTTTTTAA+TGG | + | chr1_4:73781334-73781353 | Msa0184370:intron | 5.0% |
| !!! | AAATTTGATTTTTTTTTAAT+GGG | + | chr1_4:73781335-73781354 | Msa0184370:intron | 5.0% |
| GTGTACCGTGAATGTGATGG+AGG | + | chr1_4:73781462-73781481 | Msa0184370:CDS | 50.0% | |
| TAGCAACTATAGCGGCGCTA+TGG | + | chr1_4:73781921-73781940 | Msa0184370:intron | 50.0% | |
| CTAAAAGCTAAGGCCCTGTC+AGG | - | chr1_4:73782186-73782205 | None:intergenic | 50.0% | |
| !! | CTGACAGGGCCTTAGCTTTT+AGG | + | chr1_4:73782184-73782203 | Msa0184370:intron | 50.0% |
| AAAGCAGGGAAACCTTGGTC+AGG | - | chr1_4:73782210-73782229 | None:intergenic | 50.0% | |
| CAGCACACAGAGCAGCAAAA+TGG | + | chr1_4:73782250-73782269 | Msa0184370:intron | 50.0% | |
| GCAACCGCAATTGCAACTGT+AGG | - | chr1_4:73782662-73782681 | None:intergenic | 50.0% | |
| GGGCATGGTTCAACAATGGA+TGG | + | chr1_4:73782755-73782774 | Msa0184370:intron | 50.0% | |
| ATACACCAGAGAGCTCTGCA+AGG | + | chr1_4:73783013-73783032 | Msa0184370:CDS | 50.0% | |
| TACACCAGAGAGCTCTGCAA+GGG | + | chr1_4:73783014-73783033 | Msa0184370:CDS | 50.0% | |
| GAGCTCTGCAAGGGAAGAAT+TGG | + | chr1_4:73783023-73783042 | Msa0184370:CDS | 50.0% | |
| AGAAGACGAGGCTGAGTTAC+TGG | + | chr1_4:73783125-73783144 | Msa0184370:CDS | 50.0% | |
| ! | TGGCATTGAGACCCGAATCA+CGG | - | chr1_4:73784015-73784034 | None:intergenic | 50.0% |
| TGCAACATCTCTGCAGGAAG+AGG | + | chr1_4:73784153-73784172 | Msa0184370:intron | 50.0% | |
| GCAGGAAGAGGCAAAACATC+AGG | + | chr1_4:73784165-73784184 | Msa0184370:intron | 50.0% | |
| GGCAAAACATCAGGAAAGGG+AGG | + | chr1_4:73784174-73784193 | Msa0184370:CDS | 50.0% | |
| GGAGGATAAAGATGCAGCCA+TGG | + | chr1_4:73784192-73784211 | Msa0184370:CDS | 50.0% | |
| CATAGAGAAGAGGCCCTTCA+TGG | + | chr1_4:73784258-73784277 | Msa0184370:CDS | 50.0% | |
| GCTATGGCAGTGTTGCATGG+CGG | + | chr1_4:73781937-73781956 | Msa0184370:intron | 55.0% | |
| TCTTCCCTTGCAGAGCTCTC+TGG | - | chr1_4:73783021-73783040 | None:intergenic | 55.0% | |
| ! | GTATTCCTCGCTGGCCTCAT+AGG | + | chr1_4:73783578-73783597 | Msa0184370:CDS | 55.0% |
| ATCTTCCTATGAGGCCAGCG+AGG | - | chr1_4:73783586-73783605 | None:intergenic | 55.0% | |
| ! | ACGGTGAGCCACCGTGATTT+TGG | - | chr1_4:73783996-73784015 | None:intergenic | 55.0% |
| GGCGCTATGGCAGTGTTGCA+TGG | + | chr1_4:73781934-73781953 | Msa0184370:intron | 60.0% | |
| CACGGTGGCTCACCGTGATT+CGG | + | chr1_4:73784000-73784019 | Msa0184370:intron | 60.0% | |
| ACGGTGGCTCACCGTGATTC+GGG | + | chr1_4:73784001-73784020 | Msa0184370:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 73781080 | 73784396 | 73781080 | ID=Msa0184370;Name=Msa0184370 |
| chr1_4 | mRNA | 73781080 | 73784396 | 73781080 | ID=Msa0184370-mRNA-1;Parent=Msa0184370;Name=Msa0184370-mRNA-1;_AED=0.08;_eAED=0.08;_QI=145|1|0.8|1|1|1|5|0|331 |
| chr1_4 | exon | 73781080 | 73781276 | 73781080 | ID=Msa0184370-mRNA-1:exon:25111;Parent=Msa0184370-mRNA-1 |
| chr1_4 | exon | 73781442 | 73781694 | 73781442 | ID=Msa0184370-mRNA-1:exon:25112;Parent=Msa0184370-mRNA-1 |
| chr1_4 | exon | 73782930 | 73783177 | 73782930 | ID=Msa0184370-mRNA-1:exon:25113;Parent=Msa0184370-mRNA-1 |
| chr1_4 | exon | 73783425 | 73783639 | 73783425 | ID=Msa0184370-mRNA-1:exon:25114;Parent=Msa0184370-mRNA-1 |
| chr1_4 | exon | 73784169 | 73784396 | 73784169 | ID=Msa0184370-mRNA-1:exon:25115;Parent=Msa0184370-mRNA-1 |
| chr1_4 | five_prime_UTR | 73781080 | 73781224 | 73781080 | ID=Msa0184370-mRNA-1:five_prime_utr;Parent=Msa0184370-mRNA-1 |
| chr1_4 | CDS | 73781225 | 73781276 | 73781225 | ID=Msa0184370-mRNA-1:cds;Parent=Msa0184370-mRNA-1 |
| chr1_4 | CDS | 73781442 | 73781694 | 73781442 | ID=Msa0184370-mRNA-1:cds;Parent=Msa0184370-mRNA-1 |
| chr1_4 | CDS | 73782930 | 73783177 | 73782930 | ID=Msa0184370-mRNA-1:cds;Parent=Msa0184370-mRNA-1 |
| chr1_4 | CDS | 73783425 | 73783639 | 73783425 | ID=Msa0184370-mRNA-1:cds;Parent=Msa0184370-mRNA-1 |
| chr1_4 | CDS | 73784169 | 73784396 | 73784169 | ID=Msa0184370-mRNA-1:cds;Parent=Msa0184370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
