Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0801330 | XP_003612350.1 | 93.175 | 337 | 16 | 2 | 1 | 337 | 1 | 330 | 0.0 | 635 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0801330 | sp|O81791|RKD5_ARATH | 50.456 | 329 | 139 | 9 | 1 | 319 | 40 | 354 | 4.27e-93 | 285 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0801330 | G7K041 | 93.175 | 337 | 16 | 2 | 1 | 337 | 1 | 330 | 0.0 | 635 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0801330 | TF | RWP-RK |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0801330 | Msa0839020 | 0.827526 | 1.490150e-54 | -8.615850e-47 |
| Msa0184370 | Msa0801330 | 0.820679 | 6.040063e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0801330 | MtrunA17_Chr5g0406901 | 93.175 | 337 | 16 | 2 | 1 | 337 | 1 | 330 | 0.0 | 635 |
| Msa0801330 | MtrunA17_Chr3g0092141 | 36.296 | 135 | 78 | 2 | 187 | 320 | 38 | 165 | 2.75e-23 | 95.5 |
| Msa0801330 | MtrunA17_Chr4g0060761 | 39.062 | 128 | 74 | 1 | 198 | 325 | 146 | 269 | 5.57e-23 | 96.7 |
| Msa0801330 | MtrunA17_Chr3g0127001 | 38.400 | 125 | 59 | 2 | 196 | 320 | 148 | 254 | 9.46e-21 | 90.1 |
| Msa0801330 | MtrunA17_Chr1g0182631 | 38.400 | 125 | 59 | 2 | 196 | 320 | 121 | 227 | 6.54e-20 | 87.0 |
| Msa0801330 | MtrunA17_Chr3g0136081 | 48.276 | 87 | 40 | 2 | 205 | 289 | 414 | 497 | 1.34e-13 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0801330 | AT4G35590.1 | 50.456 | 329 | 139 | 9 | 1 | 319 | 40 | 354 | 4.34e-94 | 285 |
| Msa0801330 | AT4G35590.2 | 50.794 | 315 | 131 | 9 | 15 | 319 | 4 | 304 | 7.13e-91 | 275 |
| Msa0801330 | AT1G74480.1 | 46.087 | 115 | 57 | 2 | 205 | 317 | 131 | 242 | 1.33e-23 | 99.0 |
| Msa0801330 | AT1G18790.1 | 44.628 | 121 | 61 | 3 | 200 | 318 | 120 | 236 | 1.45e-23 | 98.6 |
| Msa0801330 | AT5G66990.1 | 42.727 | 110 | 59 | 2 | 212 | 320 | 164 | 270 | 2.56e-21 | 92.4 |
| Msa0801330 | AT5G53040.1 | 42.609 | 115 | 53 | 1 | 206 | 320 | 147 | 248 | 3.92e-21 | 91.3 |
| Msa0801330 | AT5G16100.2 | 50.000 | 64 | 32 | 0 | 199 | 262 | 346 | 409 | 1.43e-13 | 71.6 |
Find 65 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCTTCATCTTCATCTTCA+TGG | 0.203507 | 5_3:-15109559 | Msa0801330:intron |
| AAAGATTACTTTATCAGATT+TGG | 0.267461 | 5_3:-15107297 | Msa0801330:CDS |
| AAAAGGAAGTGCAGAGAATT+TGG | 0.277802 | 5_3:-15107209 | Msa0801330:CDS |
| CAGTCTCATTCATGATCTTC+AGG | 0.329225 | 5_3:-15107147 | Msa0801330:intron |
| TTCTTTGACGCTTCTGCAAT+TGG | 0.345585 | 5_3:+15107257 | None:intergenic |
| TTTGGAATGGCCTGAAGCTT+TGG | 0.353863 | 5_3:+15107832 | None:intergenic |
| GATTTCAACAATCTAAGAAT+TGG | 0.356192 | 5_3:+15109214 | None:intergenic |
| AGAAGACGAGTCTGAGTTAC+TGG | 0.356355 | 5_3:-15107641 | Msa0801330:CDS |
| TTTCAGGAATCCAAAGCTTC+AGG | 0.357774 | 5_3:-15107842 | Msa0801330:intron |
| GAGCTCTGCAAGGGAAGAAT+TGG | 0.370187 | 5_3:-15107743 | Msa0801330:CDS |
| ATACCTTGTAACCAACAAAA+AGG | 0.370413 | 5_3:+15109090 | None:intergenic |
| TGGAGATCATTAAGCAGGTT+TGG | 0.377748 | 5_3:+15107814 | None:intergenic |
| GTATTCCTCGCTGGCCTCAT+AGG | 0.379146 | 5_3:-15107187 | Msa0801330:CDS |
| AAGGGTATAAGAATGGAGTT+TGG | 0.381031 | 5_3:-15109168 | Msa0801330:CDS |
| TGATGCTAATTGCTAGGTTT+AGG | 0.384292 | 5_3:+15106379 | None:intergenic |
| GAAAATGAAGAAGAAGAAGT+TGG | 0.392727 | 5_3:+15109581 | None:intergenic |
| TCTTCCCTTGCAGAGCTCTC+TGG | 0.396713 | 5_3:+15107748 | None:intergenic |
| AGTCTTGCCTGTGCTTAATC+AGG | 0.396954 | 5_3:-15107686 | Msa0801330:CDS |
| CATAGAGAAGAGGCCCTTCA+TGG | 0.404040 | 5_3:-15106500 | Msa0801330:CDS |
| TTTCTCCTCCATCACATTCA+CGG | 0.441238 | 5_3:+15109299 | None:intergenic |
| AAATTGAGACCAAGAGATTC+AGG | 0.445679 | 5_3:-15106471 | Msa0801330:CDS |
| CGTCAAAGAATCTAAATGTT+GGG | 0.449206 | 5_3:-15107244 | Msa0801330:CDS |
| AAAGATGTTGGAAAGTGAAA+AGG | 0.459498 | 5_3:-15106527 | Msa0801330:CDS |
| TTGGGCTTACTGTTCTCAAA+AGG | 0.466425 | 5_3:-15107226 | Msa0801330:CDS |
| TTGCCTTCTTATAACTGCCA+TGG | 0.468291 | 5_3:+15106549 | None:intergenic |
| AACATCTTGCCTGAATCTCT+TGG | 0.476779 | 5_3:+15106462 | None:intergenic |
| CTCAATTTGTATGTCCATGA+AGG | 0.479972 | 5_3:+15106486 | None:intergenic |
| TCAGACTCGTCTTCTTCAAA+AGG | 0.484709 | 5_3:+15107649 | None:intergenic |
| ACAGGCAAGACTATCTTTAG+TGG | 0.485270 | 5_3:+15107697 | None:intergenic |
| GAGAATTTGGTATTCCTCGC+TGG | 0.487057 | 5_3:-15107196 | Msa0801330:CDS |
| GCAGGAAGAGGCAAAACATC+AGG | 0.497528 | 5_3:-15106593 | Msa0801330:intron |
| TATAAGAAGGCAAAAGATGT+TGG | 0.505266 | 5_3:-15106539 | Msa0801330:CDS |
| ATCATTAAGCAGGTTTGGAA+TGG | 0.506660 | 5_3:+15107819 | None:intergenic |
| AATTGGCATATCAAAGTACT+TGG | 0.507062 | 5_3:+15107274 | None:intergenic |
| GCAAGACTATCTTTAGTGGT+TGG | 0.512102 | 5_3:+15107701 | None:intergenic |
| AGAAGTTGGAGAAAGCATGA+AGG | 0.512290 | 5_3:+15109595 | None:intergenic |
| TGAATGTGATGGAGGAGAAA+AGG | 0.512445 | 5_3:-15109296 | Msa0801330:CDS |
| ATTGCATGTACCTGGTTGAA+TGG | 0.520241 | 5_3:+15109500 | None:intergenic |
| TCATGTGGAGATCATTAAGC+AGG | 0.525296 | 5_3:+15107809 | None:intergenic |
| AATCTTTGCAACATGGTCAC+TGG | 0.527182 | 5_3:+15107313 | None:intergenic |
| TTGGAATGTGAGAAAATTGA+GGG | 0.529395 | 5_3:+15109113 | None:intergenic |
| ATACAAGTTGGAACCGAAGA+AGG | 0.529415 | 5_3:-15107785 | Msa0801330:CDS |
| ATCAGATGATGCTAATTGCT+AGG | 0.533299 | 5_3:+15106373 | None:intergenic |
| AGAGGCAAAACATCAGGAAA+GGG | 0.535237 | 5_3:-15106587 | Msa0801330:CDS |
| GCGTCAAAGAATCTAAATGT+TGG | 0.551834 | 5_3:-15107245 | Msa0801330:CDS |
| GTTGGAATGTGAGAAAATTG+AGG | 0.552092 | 5_3:+15109112 | None:intergenic |
| CAGCCATGGCAGTTATAAGA+AGG | 0.552518 | 5_3:-15106552 | Msa0801330:CDS |
| TCTCCACATGATATACAAGT+TGG | 0.555482 | 5_3:-15107797 | Msa0801330:CDS |
| AAGAGGCAAAACATCAGGAA+AGG | 0.561722 | 5_3:-15106588 | Msa0801330:CDS |
| GTTCCAACTTGTATATCATG+TGG | 0.569302 | 5_3:+15107794 | None:intergenic |
| GAGAAGAAGAGTAATGAGCG+AGG | 0.586084 | 5_3:+15109533 | None:intergenic |
| AAAAGGAAAACATAGAGAAG+AGG | 0.595516 | 5_3:-15106510 | Msa0801330:CDS |
| GGAGGATAAAGATGCAGCCA+TGG | 0.600209 | 5_3:-15106566 | Msa0801330:CDS |
| AGTGATTTGATCTTCCTATG+AGG | 0.604696 | 5_3:+15107173 | None:intergenic |
| TTGAGATCCTGATTAAGCAC+AGG | 0.605314 | 5_3:+15107679 | None:intergenic |
| TCAATTTGTATGTCCATGAA+GGG | 0.616363 | 5_3:+15106487 | None:intergenic |
| GGCAAAACATCAGGAAAGGG+AGG | 0.624378 | 5_3:-15106584 | Msa0801330:CDS |
| TACACCAGAGAGCTCTGCAA+GGG | 0.628005 | 5_3:-15107752 | Msa0801330:CDS |
| CATGTGTACCGTGAATGTGA+TGG | 0.635852 | 5_3:-15109307 | Msa0801330:CDS |
| TTCAACAACACCATTCAACC+AGG | 0.645034 | 5_3:-15109510 | Msa0801330:intron |
| ATACACCAGAGAGCTCTGCA+AGG | 0.645197 | 5_3:-15107753 | Msa0801330:CDS |
| ATAAAGTAATCTTTGCAACA+TGG | 0.664575 | 5_3:+15107306 | None:intergenic |
| ATCTTCCTATGAGGCCAGCG+AGG | 0.669880 | 5_3:+15107182 | None:intergenic |
| TCTGCAAGGGAAGAATTGGA+AGG | 0.677605 | 5_3:-15107739 | Msa0801330:CDS |
| GTGTACCGTGAATGTGATGG+AGG | 0.689782 | 5_3:-15109304 | Msa0801330:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATACACTTATTTTATTAAT+AGG | - | chr5_3:15108599-15108618 | Msa0801330:intron | 10.0% |
| !! | TCATAATAATAAATAAAAAG+TGG | + | chr5_3:15108974-15108993 | None:intergenic | 10.0% |
| !! | ACAATTCAAATTCAATAAAA+GGG | + | chr5_3:15107037-15107056 | None:intergenic | 15.0% |
| !! | AACAATTCAAATTCAATAAA+AGG | + | chr5_3:15107038-15107057 | None:intergenic | 15.0% |
| !! | ATTATATGATTATGTATTCT+GGG | - | chr5_3:15107065-15107084 | Msa0801330:intron | 15.0% |
| !!! | TATTTTATTAATAGGAATCA+TGG | - | chr5_3:15108607-15108626 | Msa0801330:intron | 15.0% |
| !!! | TTTTTTGTTGTTTTTGTTTG+TGG | - | chr5_3:15106700-15106719 | Msa0801330:intron | 20.0% |
| !!! | TTTTTGTTGTTTTTGTTTGT+GGG | - | chr5_3:15106701-15106720 | Msa0801330:intron | 20.0% |
| !! | GATTATATGATTATGTATTC+TGG | - | chr5_3:15107064-15107083 | Msa0801330:intron | 20.0% |
| !! | AATACAAATTGATTAAAGCA+GGG | + | chr5_3:15107546-15107565 | None:intergenic | 20.0% |
| !! | ACATTTATATATCATTCACA+GGG | + | chr5_3:15107620-15107639 | None:intergenic | 20.0% |
| !! | TACATTTATATATCATTCAC+AGG | + | chr5_3:15107621-15107640 | None:intergenic | 20.0% |
| !!! | TATTGATTTCTTTATGTATG+TGG | - | chr5_3:15107805-15107824 | Msa0801330:CDS | 20.0% |
| !!! | GAATATGTTTTTTGATTTCT+TGG | - | chr5_3:15108188-15108207 | Msa0801330:intron | 20.0% |
| !! | TAAAATAAGTGTATAAAGCT+AGG | + | chr5_3:15108594-15108613 | None:intergenic | 20.0% |
| !!! | TTTTTTAGGAAAGAAAAAGA+GGG | - | chr5_3:15108749-15108768 | Msa0801330:intron | 20.0% |
| !! | AAAGATTACTTTATCAGATT+TGG | - | chr5_3:15108791-15108810 | Msa0801330:intron | 20.0% |
| !! | TATTTCAACCAAATACTATA+AGG | + | chr5_3:15109137-15109156 | None:intergenic | 20.0% |
| !! | ATGAAAATTTATAGTATCTG+AGG | - | chr5_3:15109162-15109181 | Msa0801330:CDS | 20.0% |
| !! | TTGTAACTTAAACAAAATCA+CGG | + | chr5_3:15109288-15109307 | None:intergenic | 20.0% |
| !! | TTATAGACCAAATACTTTAT+AGG | + | chr5_3:15109387-15109406 | None:intergenic | 20.0% |
| !!! | TTGAAAAACAGAATTTTCTA+CGG | - | chr5_3:15109677-15109696 | Msa0801330:five_prime_UTR | 20.0% |
| !!! | TTTTGTTGTTTTTGTTTGTG+GGG | - | chr5_3:15106702-15106721 | Msa0801330:intron | 25.0% |
| ! | GATTTCAACAATCTAAGAAT+TGG | + | chr5_3:15106877-15106896 | None:intergenic | 25.0% |
| !!! | TTTCTGAAGAGATTTTTGAA+GGG | - | chr5_3:15106902-15106921 | Msa0801330:intron | 25.0% |
| !!! | ATTTTTGAAGGGTATAAGAA+TGG | - | chr5_3:15106913-15106932 | Msa0801330:intron | 25.0% |
| ! | CAATACAAATTGATTAAAGC+AGG | + | chr5_3:15107547-15107566 | None:intergenic | 25.0% |
| ! | AGTTATCTAATCTAACAAAC+AGG | + | chr5_3:15107763-15107782 | None:intergenic | 25.0% |
| !!! | CATGTTCTTCTTTAATTTTC+AGG | - | chr5_3:15108230-15108249 | Msa0801330:intron | 25.0% |
| ! | GACATAATTAACTCAACATT+AGG | + | chr5_3:15108683-15108702 | None:intergenic | 25.0% |
| !!! | GTTTTTTAGGAAAGAAAAAG+AGG | - | chr5_3:15108748-15108767 | Msa0801330:intron | 25.0% |
| ! | ATAAAGTAATCTTTGCAACA+TGG | + | chr5_3:15108785-15108804 | None:intergenic | 25.0% |
| !! | GTAAATCATAGAAGTTTTCT+TGG | + | chr5_3:15109051-15109070 | None:intergenic | 25.0% |
| ! | CTAAATATTAGTTCAAGAGT+TGG | + | chr5_3:15109076-15109095 | None:intergenic | 25.0% |
| ! | ATTGCAAACCTTATAGTATT+TGG | - | chr5_3:15109126-15109145 | Msa0801330:CDS | 25.0% |
| ! | GTACAGAAAAGATTTGTATA+AGG | + | chr5_3:15109205-15109224 | None:intergenic | 25.0% |
| !!! | ATTCTGTTTTTCAATAACTC+TGG | + | chr5_3:15109671-15109690 | None:intergenic | 25.0% |
| CCAAAAACAAACGAAAAAAG+CGG | - | chr5_3:15106409-15106428 | Msa0801330:CDS | 30.0% | |
| GAAAATGAAGAAGAAGAAGT+TGG | + | chr5_3:15106510-15106529 | None:intergenic | 30.0% | |
| !! | GTTTCTGAAGAGATTTTTGA+AGG | - | chr5_3:15106901-15106920 | Msa0801330:intron | 30.0% |
| TTGGAATGTGAGAAAATTGA+GGG | + | chr5_3:15106978-15106997 | None:intergenic | 30.0% | |
| ATACCTTGTAACCAACAAAA+AGG | + | chr5_3:15107001-15107020 | None:intergenic | 30.0% | |
| ! | TTATGTATTCTGGGTTTGTT+TGG | - | chr5_3:15107074-15107093 | Msa0801330:intron | 30.0% |
| GTACCAATGTTGTTAAATAG+CGG | - | chr5_3:15107129-15107148 | Msa0801330:intron | 30.0% | |
| TTATACAAAACAGTGTATCG+TGG | + | chr5_3:15107211-15107230 | None:intergenic | 30.0% | |
| TTGTGAAATAGCAACTATAG+CGG | - | chr5_3:15107235-15107254 | Msa0801330:CDS | 30.0% | |
| !! | GTTGTTTTCATAAGCTATCT+TGG | + | chr5_3:15107398-15107417 | None:intergenic | 30.0% |
| GTTCAAAAATCAGTTACCAA+TGG | + | chr5_3:15107831-15107850 | None:intergenic | 30.0% | |
| TTTGGTGAAGTTAGAATTTG+AGG | - | chr5_3:15108056-15108075 | Msa0801330:intron | 30.0% | |
| TTGGTGAAGTTAGAATTTGA+GGG | - | chr5_3:15108057-15108076 | Msa0801330:intron | 30.0% | |
| ATTAAAGAAGAACATGACAG+AGG | + | chr5_3:15108226-15108245 | None:intergenic | 30.0% | |
| GGAATAAAATGTTCAAAAGC+AGG | + | chr5_3:15108560-15108579 | None:intergenic | 30.0% | |
| ATTAGGAAGAAGTTATGCAT+TGG | + | chr5_3:15108666-15108685 | None:intergenic | 30.0% | |
| ! | AATTGGCATATCAAAGTACT+TGG | + | chr5_3:15108817-15108836 | None:intergenic | 30.0% |
| CGTCAAAGAATCTAAATGTT+GGG | - | chr5_3:15108844-15108863 | Msa0801330:intron | 30.0% | |
| GTTGTCAATTAGCATATGTT+TGG | - | chr5_3:15109229-15109248 | Msa0801330:CDS | 30.0% | |
| ! | ACTGAAGCCTATAAAGTATT+TGG | - | chr5_3:15109377-15109396 | Msa0801330:intron | 30.0% |
| TATAAGAAGGCAAAAGATGT+TGG | - | chr5_3:15109549-15109568 | Msa0801330:exon | 30.0% | |
| AAAGATGTTGGAAAGTGAAA+AGG | - | chr5_3:15109561-15109580 | Msa0801330:intron | 30.0% | |
| AAAAGGAAAACATAGAGAAG+AGG | - | chr5_3:15109578-15109597 | Msa0801330:intron | 30.0% | |
| TCAATTTGTATGTCCATGAA+GGG | + | chr5_3:15109604-15109623 | None:intergenic | 30.0% | |
| ! | AAAACAGAATTTTCTACGGT+TGG | - | chr5_3:15109681-15109700 | Msa0801330:five_prime_UTR | 30.0% |
| !!! | CCGCTTTTTTCGTTTGTTTT+TGG | + | chr5_3:15106412-15106431 | None:intergenic | 35.0% |
| CATCTTCATCTTCATCTTCA+TGG | - | chr5_3:15106529-15106548 | Msa0801330:CDS | 35.0% | |
| !!! | TGTGGGGTGTTTTTTGTTTT+TGG | - | chr5_3:15106718-15106737 | Msa0801330:intron | 35.0% |
| !!! | GTGGGGTGTTTTTTGTTTTT+GGG | - | chr5_3:15106719-15106738 | Msa0801330:intron | 35.0% |
| !!! | TGGGGTGTTTTTTGTTTTTG+GGG | - | chr5_3:15106720-15106739 | Msa0801330:intron | 35.0% |
| !! | GAGTTTGTGTTTTCTGAGAA+TGG | - | chr5_3:15106826-15106845 | Msa0801330:intron | 35.0% |
| ! | AAGGGTATAAGAATGGAGTT+TGG | - | chr5_3:15106920-15106939 | Msa0801330:intron | 35.0% |
| GTTGGAATGTGAGAAAATTG+AGG | + | chr5_3:15106979-15106998 | None:intergenic | 35.0% | |
| ! | TCACATTCCAACCTTTTTGT+TGG | - | chr5_3:15106987-15107006 | Msa0801330:intron | 35.0% |
| CTTGTAACCAACAAAAAGGT+TGG | + | chr5_3:15106997-15107016 | None:intergenic | 35.0% | |
| !! | CAACCTTTTTGTTGGTTACA+AGG | - | chr5_3:15106995-15107014 | Msa0801330:intron | 35.0% |
| TAGCCGCTATTTAACAACAT+TGG | + | chr5_3:15107135-15107154 | None:intergenic | 35.0% | |
| TTGTTAAATAGCGGCTATAG+CGG | - | chr5_3:15107138-15107157 | Msa0801330:intron | 35.0% | |
| ! | GTTATAGTGCTATTGCATAG+CGG | - | chr5_3:15107162-15107181 | Msa0801330:CDS | 35.0% |
| ! | CATAGCGGAATTTGAACAAA+CGG | - | chr5_3:15107177-15107196 | Msa0801330:CDS | 35.0% |
| ACTAAGTTGTTTATCCTGAC+AGG | - | chr5_3:15107491-15107510 | Msa0801330:intron | 35.0% | |
| CTAAGTTGTTTATCCTGACA+GGG | - | chr5_3:15107492-15107511 | Msa0801330:intron | 35.0% | |
| TAATGTCCCTACACAAGTAA+CGG | - | chr5_3:15107668-15107687 | Msa0801330:CDS | 35.0% | |
| TTCTTTATGTATGTGGCCAT+TGG | - | chr5_3:15107812-15107831 | Msa0801330:CDS | 35.0% | |
| !! | TGGTAACTGATTTTTGAACC+CGG | - | chr5_3:15107832-15107851 | Msa0801330:CDS | 35.0% |
| TTTCGTAACTGTAAGGAATC+CGG | + | chr5_3:15107854-15107873 | None:intergenic | 35.0% | |
| GATTCCTTACAGTTACGAAA+TGG | - | chr5_3:15107854-15107873 | Msa0801330:intron | 35.0% | |
| GAAATGGTGCAGTAAATGTT+TGG | - | chr5_3:15107870-15107889 | Msa0801330:intron | 35.0% | |
| CTCGGATTTCAAATCGTATT+TGG | + | chr5_3:15107946-15107965 | None:intergenic | 35.0% | |
| AGGATGAAAATCAGACAACT+CGG | + | chr5_3:15107964-15107983 | None:intergenic | 35.0% | |
| AGTATGTTGTGGAACAGTTA+GGG | + | chr5_3:15108036-15108055 | None:intergenic | 35.0% | |
| AAGTATGTTGTGGAACAGTT+AGG | + | chr5_3:15108037-15108056 | None:intergenic | 35.0% | |
| ! | ACTGTTCCACAACATACTTT+TGG | - | chr5_3:15108038-15108057 | Msa0801330:intron | 35.0% |
| ! | ACTTCACCAAAAGTATGTTG+TGG | + | chr5_3:15108047-15108066 | None:intergenic | 35.0% |
| ATCATTAAGCAGGTTTGGAA+TGG | + | chr5_3:15108272-15108291 | None:intergenic | 35.0% | |
| TCTCCACATGATATACAAGT+TGG | - | chr5_3:15108291-15108310 | Msa0801330:intron | 35.0% | |
| GTTCCAACTTGTATATCATG+TGG | + | chr5_3:15108297-15108316 | None:intergenic | 35.0% | |
| ! | GTATCTTTTCGTTCCTTCTT+CGG | + | chr5_3:15108319-15108338 | None:intergenic | 35.0% |
| !! | ACAGATTTTGAAAGTTCAGC+AGG | - | chr5_3:15108478-15108497 | Msa0801330:intron | 35.0% |
| GAACAACGTGATAATTGACT+GGG | + | chr5_3:15108538-15108557 | None:intergenic | 35.0% | |
| TTGATAAAGTGAGTGTTTGC+AGG | - | chr5_3:15108726-15108745 | Msa0801330:intron | 35.0% | |
| !!! | TGAGTGTTTGCAGGTTTTTT+AGG | - | chr5_3:15108735-15108754 | Msa0801330:intron | 35.0% |
| GCGTCAAAGAATCTAAATGT+TGG | - | chr5_3:15108843-15108862 | Msa0801330:intron | 35.0% | |
| ! | AAAAGGAAGTGCAGAGAATT+TGG | - | chr5_3:15108879-15108898 | Msa0801330:intron | 35.0% |
| AGTGATTTGATCTTCCTATG+AGG | + | chr5_3:15108918-15108937 | None:intergenic | 35.0% | |
| ! | TATCTGAGGCTTCTTTAGAT+AGG | - | chr5_3:15109176-15109195 | Msa0801330:CDS | 35.0% |
| ! | TAGCTTTTGTGCCAAAATCA+CGG | - | chr5_3:15109312-15109331 | Msa0801330:CDS | 35.0% |
| GAGTTCACTTGAAGATTGTT+AGG | + | chr5_3:15109452-15109471 | None:intergenic | 35.0% | |
| GAGATGTTGCAATGTGTATA+AGG | + | chr5_3:15109474-15109493 | None:intergenic | 35.0% | |
| CTCAATTTGTATGTCCATGA+AGG | + | chr5_3:15109605-15109624 | None:intergenic | 35.0% | |
| AAATTGAGACCAAGAGATTC+AGG | - | chr5_3:15109617-15109636 | Msa0801330:five_prime_UTR | 35.0% | |
| ! | AGAAGTTGGAGAAAGCATGA+AGG | + | chr5_3:15106496-15106515 | None:intergenic | 40.0% |
| TTCAACAACACCATTCAACC+AGG | - | chr5_3:15106578-15106597 | Msa0801330:CDS | 40.0% | |
| ATTGCATGTACCTGGTTGAA+TGG | + | chr5_3:15106591-15106610 | None:intergenic | 40.0% | |
| !!! | GGGGTGTTTTTTGTTTTTGG+GGG | - | chr5_3:15106721-15106740 | Msa0801330:intron | 40.0% |
| !!! | GGGTGTTTTTTGTTTTTGGG+GGG | - | chr5_3:15106722-15106741 | Msa0801330:intron | 40.0% |
| TTTCTCCTCCATCACATTCA+CGG | + | chr5_3:15106792-15106811 | None:intergenic | 40.0% | |
| ! | TGAATGTGATGGAGGAGAAA+AGG | - | chr5_3:15106792-15106811 | Msa0801330:intron | 40.0% |
| TGATTAAAGCAGGGAAACCT+TGG | + | chr5_3:15107537-15107556 | None:intergenic | 40.0% | |
| GGTGTGTACTGTGTACAAAT+TGG | - | chr5_3:15107593-15107612 | Msa0801330:CDS | 40.0% | |
| TTCGTAACTGTAAGGAATCC+GGG | + | chr5_3:15107853-15107872 | None:intergenic | 40.0% | |
| TGCACCATTTCGTAACTGTA+AGG | + | chr5_3:15107861-15107880 | None:intergenic | 40.0% | |
| GTGCAGTAAATGTTTGGCAT+TGG | - | chr5_3:15107876-15107895 | Msa0801330:intron | 40.0% | |
| TCATCCTACAGTTGCAATTG+CGG | - | chr5_3:15107977-15107996 | Msa0801330:intron | 40.0% | |
| TTGTGGAACAGTTAGGGAAA+TGG | + | chr5_3:15108030-15108049 | None:intergenic | 40.0% | |
| GAAGTTAGAATTTGAGGGCA+TGG | - | chr5_3:15108062-15108081 | Msa0801330:intron | 40.0% | |
| AGAACATGACAGAGGAAGTT+AGG | + | chr5_3:15108218-15108237 | None:intergenic | 40.0% | |
| TTTCAGGAATCCAAAGCTTC+AGG | - | chr5_3:15108246-15108265 | Msa0801330:intron | 40.0% | |
| TGGAGATCATTAAGCAGGTT+TGG | + | chr5_3:15108277-15108296 | None:intergenic | 40.0% | |
| TCATGTGGAGATCATTAAGC+AGG | + | chr5_3:15108282-15108301 | None:intergenic | 40.0% | |
| ! | ATACAAGTTGGAACCGAAGA+AGG | - | chr5_3:15108303-15108322 | Msa0801330:intron | 40.0% |
| GCAAGACTATCTTTAGTGGT+TGG | + | chr5_3:15108390-15108409 | None:intergenic | 40.0% | |
| ACAGGCAAGACTATCTTTAG+TGG | + | chr5_3:15108394-15108413 | None:intergenic | 40.0% | |
| TTGAGATCCTGATTAAGCAC+AGG | + | chr5_3:15108412-15108431 | None:intergenic | 40.0% | |
| TCAGACTCGTCTTCTTCAAA+AGG | + | chr5_3:15108442-15108461 | None:intergenic | 40.0% | |
| !!! | GCAGGTTTTGAAAGTTTACC+AGG | - | chr5_3:15108496-15108515 | Msa0801330:intron | 40.0% |
| ! | GGAGCATTTGAATCTAAACC+TGG | + | chr5_3:15108517-15108536 | None:intergenic | 40.0% |
| GGAACAACGTGATAATTGAC+TGG | + | chr5_3:15108539-15108558 | None:intergenic | 40.0% | |
| TAAAGCTAGGACTGAGTTGT+TGG | + | chr5_3:15108581-15108600 | None:intergenic | 40.0% | |
| AATCTTTGCAACATGGTCAC+TGG | + | chr5_3:15108778-15108797 | None:intergenic | 40.0% | |
| TTCTTTGACGCTTCTGCAAT+TGG | + | chr5_3:15108834-15108853 | None:intergenic | 40.0% | |
| TTGGGCTTACTGTTCTCAAA+AGG | - | chr5_3:15108862-15108881 | Msa0801330:intron | 40.0% | |
| CAGTCTCATTCATGATCTTC+AGG | - | chr5_3:15108941-15108960 | Msa0801330:intron | 40.0% | |
| TATAGGCTTCAGTGCATGTT+TGG | + | chr5_3:15109370-15109389 | None:intergenic | 40.0% | |
| AAGAGGCAAAACATCAGGAA+AGG | - | chr5_3:15109500-15109519 | Msa0801330:intron | 40.0% | |
| AGAGGCAAAACATCAGGAAA+GGG | - | chr5_3:15109501-15109520 | Msa0801330:intron | 40.0% | |
| TTGCCTTCTTATAACTGCCA+TGG | + | chr5_3:15109542-15109561 | None:intergenic | 40.0% | |
| AACATCTTGCCTGAATCTCT+TGG | + | chr5_3:15109629-15109648 | None:intergenic | 40.0% | |
| !! | GGCAAGATGTTTTCAAGAGA+AGG | - | chr5_3:15109638-15109657 | Msa0801330:five_prime_UTR | 40.0% |
| GAGAAGAAGAGTAATGAGCG+AGG | + | chr5_3:15106558-15106577 | None:intergenic | 45.0% | |
| GGTATTGCATTGCATGTACC+TGG | + | chr5_3:15106599-15106618 | None:intergenic | 45.0% | |
| CATGTGTACCGTGAATGTGA+TGG | - | chr5_3:15106781-15106800 | Msa0801330:intron | 45.0% | |
| TTGGTCAGGCCTAAAAGCTA+AGG | + | chr5_3:15107518-15107537 | None:intergenic | 45.0% | |
| !! | TTAGCTTTTAGGCCTGACCA+AGG | - | chr5_3:15107517-15107536 | Msa0801330:intron | 45.0% |
| GATTCGCCGTTACTTGTGTA+GGG | + | chr5_3:15107677-15107696 | None:intergenic | 45.0% | |
| TGATTCGCCGTTACTTGTGT+AGG | + | chr5_3:15107678-15107697 | None:intergenic | 45.0% | |
| ! | TGCTGCAAATGTTGACTGCA+GGG | - | chr5_3:15108001-15108020 | Msa0801330:intron | 45.0% |
| ! | TTGAGGGCATGGTTCAACAA+TGG | - | chr5_3:15108073-15108092 | Msa0801330:intron | 45.0% |
| ! | TTTGGAATGGCCTGAAGCTT+TGG | + | chr5_3:15108259-15108278 | None:intergenic | 45.0% |
| TCTGCAAGGGAAGAATTGGA+AGG | - | chr5_3:15108349-15108368 | Msa0801330:intron | 45.0% | |
| AGTCTTGCCTGTGCTTAATC+AGG | - | chr5_3:15108402-15108421 | Msa0801330:intron | 45.0% | |
| AGAAGACGAGTCTGAGTTAC+TGG | - | chr5_3:15108447-15108466 | Msa0801330:intron | 45.0% | |
| GAGAATTTGGTATTCCTCGC+TGG | - | chr5_3:15108892-15108911 | Msa0801330:intron | 45.0% | |
| ! | CTTTTGTGCCAAAATCACGG+TGG | - | chr5_3:15109315-15109334 | Msa0801330:CDS | 45.0% |
| GCTTCAGTGCATGTTTGGAT+TGG | + | chr5_3:15109365-15109384 | None:intergenic | 45.0% | |
| ACACATTGCAACATCTCTGC+AGG | - | chr5_3:15109477-15109496 | Msa0801330:intron | 45.0% | |
| CAGCCATGGCAGTTATAAGA+AGG | - | chr5_3:15109536-15109555 | Msa0801330:CDS | 45.0% | |
| !! | AAATTGAAAAAATAAAAAAT+GGG | + | chr5_3:15106620-15106639 | None:intergenic | 5.0% |
| !! | AAAATTGAAAAAATAAAAAA+TGG | + | chr5_3:15106621-15106640 | None:intergenic | 5.0% |
| !!! | AAAAATTTGATTTTTTTTAA+TGG | - | chr5_3:15106656-15106675 | Msa0801330:intron | 5.0% |
| !!! | AAAATTTGATTTTTTTTAAT+GGG | - | chr5_3:15106657-15106676 | Msa0801330:intron | 5.0% |
| GTGTACCGTGAATGTGATGG+AGG | - | chr5_3:15106784-15106803 | Msa0801330:intron | 50.0% | |
| TAGCAACTATAGCGGCGCTA+TGG | - | chr5_3:15107243-15107262 | Msa0801330:CDS | 50.0% | |
| GCTATGGCAGTGTTACATGG+CGG | - | chr5_3:15107259-15107278 | Msa0801330:CDS | 50.0% | |
| CTAAAAGCTAAGGCCCTGTC+AGG | + | chr5_3:15107508-15107527 | None:intergenic | 50.0% | |
| !! | CTGACAGGGCCTTAGCTTTT+AGG | - | chr5_3:15107506-15107525 | Msa0801330:intron | 50.0% |
| AAAGCAGGGAAACCTTGGTC+AGG | + | chr5_3:15107532-15107551 | None:intergenic | 50.0% | |
| CAGCACACAGAGCAGCAAAA+TGG | - | chr5_3:15107572-15107591 | Msa0801330:intron | 50.0% | |
| ! | CTGCTGCAAATGTTGACTGC+AGG | - | chr5_3:15108000-15108019 | Msa0801330:intron | 50.0% |
| GGGCATGGTTCAACAATGGA+TGG | - | chr5_3:15108077-15108096 | Msa0801330:intron | 50.0% | |
| ATACACCAGAGAGCTCTGCA+AGG | - | chr5_3:15108335-15108354 | Msa0801330:intron | 50.0% | |
| TACACCAGAGAGCTCTGCAA+GGG | - | chr5_3:15108336-15108355 | Msa0801330:intron | 50.0% | |
| GAGCTCTGCAAGGGAAGAAT+TGG | - | chr5_3:15108345-15108364 | Msa0801330:intron | 50.0% | |
| ! | TGGCATTGAGACCCGAATCA+CGG | + | chr5_3:15109345-15109364 | None:intergenic | 50.0% |
| TGCAACATCTCTGCAGGAAG+AGG | - | chr5_3:15109483-15109502 | Msa0801330:intron | 50.0% | |
| GCAGGAAGAGGCAAAACATC+AGG | - | chr5_3:15109495-15109514 | Msa0801330:intron | 50.0% | |
| GGCAAAACATCAGGAAAGGG+AGG | - | chr5_3:15109504-15109523 | Msa0801330:intron | 50.0% | |
| GGAGGATAAAGATGCAGCCA+TGG | - | chr5_3:15109522-15109541 | Msa0801330:CDS | 50.0% | |
| CATAGAGAAGAGGCCCTTCA+TGG | - | chr5_3:15109588-15109607 | Msa0801330:intron | 50.0% | |
| GGCGCTATGGCAGTGTTACA+TGG | - | chr5_3:15107256-15107275 | Msa0801330:CDS | 55.0% | |
| GCAGCCGCAATTGCAACTGT+AGG | + | chr5_3:15107984-15108003 | None:intergenic | 55.0% | |
| TCTTCCCTTGCAGAGCTCTC+TGG | + | chr5_3:15108343-15108362 | None:intergenic | 55.0% | |
| ! | GTATTCCTCGCTGGCCTCAT+AGG | - | chr5_3:15108901-15108920 | Msa0801330:intron | 55.0% |
| ATCTTCCTATGAGGCCAGCG+AGG | + | chr5_3:15108909-15108928 | None:intergenic | 55.0% | |
| ! | ACGGTGAGCCACCGTGATTT+TGG | + | chr5_3:15109326-15109345 | None:intergenic | 55.0% |
| CACGGTGGCTCACCGTGATT+CGG | - | chr5_3:15109330-15109349 | Msa0801330:intron | 60.0% | |
| ACGGTGGCTCACCGTGATTC+GGG | - | chr5_3:15109331-15109350 | Msa0801330:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 15106384 | 15109726 | 15106384 | ID=Msa0801330;Name=Msa0801330 |
| chr5_3 | mRNA | 15106384 | 15109726 | 15106384 | ID=Msa0801330-mRNA-1;Parent=Msa0801330;Name=Msa0801330-mRNA-1;_AED=0.07;_eAED=0.07;_QI=143|0.8|0.66|1|0.8|0.66|6|0|337 |
| chr5_3 | exon | 15106384 | 15106611 | 15106384 | ID=Msa0801330-mRNA-1:exon:6360;Parent=Msa0801330-mRNA-1 |
| chr5_3 | exon | 15107148 | 15107362 | 15107148 | ID=Msa0801330-mRNA-1:exon:6359;Parent=Msa0801330-mRNA-1 |
| chr5_3 | exon | 15107593 | 15107858 | 15107593 | ID=Msa0801330-mRNA-1:exon:6358;Parent=Msa0801330-mRNA-1 |
| chr5_3 | exon | 15109094 | 15109346 | 15109094 | ID=Msa0801330-mRNA-1:exon:6357;Parent=Msa0801330-mRNA-1 |
| chr5_3 | exon | 15109511 | 15109572 | 15109511 | ID=Msa0801330-mRNA-1:exon:6356;Parent=Msa0801330-mRNA-1 |
| chr5_3 | exon | 15109594 | 15109726 | 15109594 | ID=Msa0801330-mRNA-1:exon:6355;Parent=Msa0801330-mRNA-1 |
| chr5_3 | five_prime_UTR | 15109594 | 15109726 | 15109594 | ID=Msa0801330-mRNA-1:five_prime_utr;Parent=Msa0801330-mRNA-1 |
| chr5_3 | five_prime_UTR | 15109563 | 15109572 | 15109563 | ID=Msa0801330-mRNA-1:five_prime_utr;Parent=Msa0801330-mRNA-1 |
| chr5_3 | CDS | 15109511 | 15109562 | 15109511 | ID=Msa0801330-mRNA-1:cds;Parent=Msa0801330-mRNA-1 |
| chr5_3 | CDS | 15109094 | 15109346 | 15109094 | ID=Msa0801330-mRNA-1:cds;Parent=Msa0801330-mRNA-1 |
| chr5_3 | CDS | 15107593 | 15107858 | 15107593 | ID=Msa0801330-mRNA-1:cds;Parent=Msa0801330-mRNA-1 |
| chr5_3 | CDS | 15107148 | 15107362 | 15107148 | ID=Msa0801330-mRNA-1:cds;Parent=Msa0801330-mRNA-1 |
| chr5_3 | CDS | 15106384 | 15106611 | 15106384 | ID=Msa0801330-mRNA-1:cds;Parent=Msa0801330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
