Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0839020 | XP_003612350.1 | 95.166 | 331 | 15 | 1 | 1 | 331 | 1 | 330 | 0.0 | 641 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0839020 | sp|O81791|RKD5_ARATH | 50.305 | 328 | 135 | 9 | 1 | 313 | 40 | 354 | 4.23e-91 | 279 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0839020 | G7K041 | 95.166 | 331 | 15 | 1 | 1 | 331 | 1 | 330 | 0.0 | 641 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0839020 | TF | RWP-RK |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0801330 | Msa0839020 | 0.827526 | 1.490150e-54 | -8.615850e-47 |
| Msa0184370 | Msa0839020 | 0.988268 | 2.331909e-173 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0839020 | MtrunA17_Chr5g0406901 | 95.166 | 331 | 15 | 1 | 1 | 331 | 1 | 330 | 0.0 | 641 |
| Msa0839020 | MtrunA17_Chr3g0092141 | 37.037 | 135 | 77 | 2 | 181 | 314 | 38 | 165 | 1.66e-23 | 95.9 |
| Msa0839020 | MtrunA17_Chr4g0060761 | 38.760 | 129 | 75 | 1 | 191 | 319 | 145 | 269 | 5.82e-23 | 96.3 |
| Msa0839020 | MtrunA17_Chr3g0127001 | 38.400 | 125 | 59 | 2 | 190 | 314 | 148 | 254 | 9.68e-21 | 90.1 |
| Msa0839020 | MtrunA17_Chr1g0182631 | 38.346 | 133 | 62 | 3 | 182 | 314 | 115 | 227 | 1.49e-20 | 89.0 |
| Msa0839020 | MtrunA17_Chr3g0136081 | 48.276 | 87 | 40 | 2 | 199 | 283 | 414 | 497 | 1.29e-13 | 71.6 |
| Msa0839020 | MtrunA17_Chr3g0143921 | 45.122 | 82 | 41 | 2 | 177 | 256 | 570 | 649 | 9.57e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0839020 | AT4G35590.1 | 50.305 | 328 | 135 | 9 | 1 | 313 | 40 | 354 | 4.30e-92 | 279 |
| Msa0839020 | AT4G35590.2 | 50.637 | 314 | 127 | 9 | 15 | 313 | 4 | 304 | 6.97e-89 | 269 |
| Msa0839020 | AT1G18790.1 | 44.628 | 121 | 61 | 3 | 194 | 312 | 120 | 236 | 1.22e-23 | 98.6 |
| Msa0839020 | AT1G74480.1 | 46.087 | 115 | 57 | 2 | 199 | 311 | 131 | 242 | 1.24e-23 | 99.0 |
| Msa0839020 | AT5G66990.1 | 42.727 | 110 | 59 | 2 | 206 | 314 | 164 | 270 | 2.18e-21 | 92.4 |
| Msa0839020 | AT5G53040.1 | 42.609 | 115 | 53 | 1 | 200 | 314 | 147 | 248 | 3.41e-21 | 91.7 |
| Msa0839020 | AT5G16100.2 | 50.000 | 64 | 32 | 0 | 193 | 256 | 346 | 409 | 1.31e-13 | 71.6 |
Find 64 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTCTTCTTCATCTTCA+TGG | 0.181413 | 5_4:+13659780 | Msa0839020:exon |
| AAAGATTACTTTATCAGATT+TGG | 0.267461 | 5_4:+13662042 | Msa0839020:CDS |
| AAAAGGAAGTGCAGAGAATT+TGG | 0.277802 | 5_4:+13662130 | Msa0839020:CDS |
| AGAAGACGAGGCTGAGTTAC+TGG | 0.328138 | 5_4:+13661699 | Msa0839020:CDS |
| CAGTCTCATTCATGATCTTC+AGG | 0.329225 | 5_4:+13662192 | Msa0839020:CDS |
| TTCTTTGACGCTTCTGCAAT+TGG | 0.345585 | 5_4:-13662082 | None:intergenic |
| TTTGGAATGGCCTGAAGCTT+TGG | 0.353863 | 5_4:-13661508 | None:intergenic |
| GATTTCAACAATCTAAGAAT+TGG | 0.356192 | 5_4:-13660126 | None:intergenic |
| TTTCAGGAATCCAAAGCTTC+AGG | 0.357774 | 5_4:+13661498 | Msa0839020:intron |
| GAGCTCTGCAAGGGAAGAAT+TGG | 0.370187 | 5_4:+13661597 | Msa0839020:CDS |
| ATACCTTGTAACCAACAAAA+AGG | 0.370413 | 5_4:-13660250 | None:intergenic |
| TGGAGATCATTAAGCAGGTT+TGG | 0.377748 | 5_4:-13661526 | None:intergenic |
| GTATTCCTCGCTGGCCTCAT+AGG | 0.379146 | 5_4:+13662152 | Msa0839020:CDS |
| AAGGGTATAAGAATGGAGTT+TGG | 0.381031 | 5_4:+13660172 | Msa0839020:CDS |
| TGATGCTAATTGCTAGGTTT+AGG | 0.384292 | 5_4:-13662953 | None:intergenic |
| AGTCTTGCCTGTGCTTAATC+AGG | 0.387896 | 5_4:+13661654 | Msa0839020:CDS |
| TCTTCCCTTGCAGAGCTCTC+TGG | 0.396713 | 5_4:-13661592 | None:intergenic |
| CATAGAGAAGAGGCCCTTCA+TGG | 0.404040 | 5_4:+13662832 | Msa0839020:CDS |
| TTTCTCCTCCATCACATTCA+CGG | 0.441238 | 5_4:-13660041 | None:intergenic |
| AAATTGAGACCAAGAGATTC+AGG | 0.445679 | 5_4:+13662861 | Msa0839020:CDS |
| CGTCAAAGAATCTAAATGTT+GGG | 0.449206 | 5_4:+13662095 | Msa0839020:CDS |
| AAAGATGTTGGAAAGTGAAA+AGG | 0.459498 | 5_4:+13662805 | Msa0839020:CDS |
| TTGGGCTTACTGTTCTCAAA+AGG | 0.466425 | 5_4:+13662113 | Msa0839020:CDS |
| TTGCCTTCTTATAACTGCCA+TGG | 0.468291 | 5_4:-13662783 | None:intergenic |
| GAAGATGAAGAAGAAGAAGT+TGG | 0.474686 | 5_4:-13659776 | None:intergenic |
| TCAGCCTCGTCTTCTTCATA+AGG | 0.476498 | 5_4:-13661691 | None:intergenic |
| AACATCTTGCCTGAATCTCT+TGG | 0.476779 | 5_4:-13662870 | None:intergenic |
| CTCAATTTGTATGTCCATGA+AGG | 0.479972 | 5_4:-13662846 | None:intergenic |
| GAGAATTTGGTATTCCTCGC+TGG | 0.487057 | 5_4:+13662143 | Msa0839020:CDS |
| GCAGGAAGAGGCAAAACATC+AGG | 0.497528 | 5_4:+13662739 | Msa0839020:intron |
| TATAAGAAGGCAAAAGATGT+TGG | 0.505266 | 5_4:+13662793 | Msa0839020:CDS |
| ATCATTAAGCAGGTTTGGAA+TGG | 0.506660 | 5_4:-13661521 | None:intergenic |
| AATTGGCATATCAAAGTACT+TGG | 0.507062 | 5_4:-13662065 | None:intergenic |
| AGAAGTTGGAGAAAGCATGA+AGG | 0.512290 | 5_4:-13659762 | None:intergenic |
| TGAATGTGATGGAGGAGAAA+AGG | 0.512445 | 5_4:+13660044 | Msa0839020:CDS |
| ATTGCATGTACCTGGTTGAA+TGG | 0.520241 | 5_4:-13659839 | None:intergenic |
| TCATGTGGAGATCATTAAGC+AGG | 0.525296 | 5_4:-13661531 | None:intergenic |
| AATCTTTGCAACATGGTCAC+TGG | 0.527182 | 5_4:-13662026 | None:intergenic |
| TTGGAATGTGAGAAAATTGA+GGG | 0.529395 | 5_4:-13660227 | None:intergenic |
| ATACAAGTTGGAACCGAAGA+AGG | 0.529415 | 5_4:+13661555 | Msa0839020:CDS |
| ATCAGATGATGCTAATTGCT+AGG | 0.533299 | 5_4:-13662959 | None:intergenic |
| AGAGGCAAAACATCAGGAAA+GGG | 0.535237 | 5_4:+13662745 | Msa0839020:CDS |
| GCGTCAAAGAATCTAAATGT+TGG | 0.551834 | 5_4:+13662094 | Msa0839020:CDS |
| GTTGGAATGTGAGAAAATTG+AGG | 0.552092 | 5_4:-13660228 | None:intergenic |
| CAGCCATGGCAGTTATAAGA+AGG | 0.552518 | 5_4:+13662780 | Msa0839020:CDS |
| TCTCCACATGATATACAAGT+TGG | 0.555482 | 5_4:+13661543 | Msa0839020:CDS |
| AAGAGGCAAAACATCAGGAA+AGG | 0.561722 | 5_4:+13662744 | Msa0839020:CDS |
| GTTCCAACTTGTATATCATG+TGG | 0.569302 | 5_4:-13661546 | None:intergenic |
| TTGAGATCCTGATTAAGCAC+AGG | 0.580889 | 5_4:-13661661 | None:intergenic |
| GAGAAGAAGAGTAATGAGCG+AGG | 0.586084 | 5_4:-13659806 | None:intergenic |
| AAAAGGAAAACATAGAGAAG+AGG | 0.595516 | 5_4:+13662822 | Msa0839020:CDS |
| GGAGGATAAAGATGCAGCCA+TGG | 0.600209 | 5_4:+13662766 | Msa0839020:CDS |
| AGTGATTTGATCTTCCTATG+AGG | 0.604696 | 5_4:-13662166 | None:intergenic |
| TCAATTTGTATGTCCATGAA+GGG | 0.616363 | 5_4:-13662845 | None:intergenic |
| GGCAAAACATCAGGAAAGGG+AGG | 0.624378 | 5_4:+13662748 | Msa0839020:CDS |
| TACACCAGAGAGCTCTGCAA+GGG | 0.628005 | 5_4:+13661588 | Msa0839020:CDS |
| CATGTGTACCGTGAATGTGA+TGG | 0.635852 | 5_4:+13660033 | Msa0839020:CDS |
| TTCAACAACACCATTCAACC+AGG | 0.645034 | 5_4:+13659829 | Msa0839020:CDS |
| ATACACCAGAGAGCTCTGCA+AGG | 0.645197 | 5_4:+13661587 | Msa0839020:CDS |
| TCTTCCTTATGAAGAAGACG+AGG | 0.662936 | 5_4:+13661687 | Msa0839020:CDS |
| ATAAAGTAATCTTTGCAACA+TGG | 0.664575 | 5_4:-13662033 | None:intergenic |
| ATCTTCCTATGAGGCCAGCG+AGG | 0.669880 | 5_4:-13662157 | None:intergenic |
| TCTGCAAGGGAAGAATTGGA+AGG | 0.677605 | 5_4:+13661601 | Msa0839020:CDS |
| GTGTACCGTGAATGTGATGG+AGG | 0.689782 | 5_4:+13660036 | Msa0839020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATACACTTATTTTATTAAT+AGG | + | chr5_4:13661850-13661869 | Msa0839020:intron | 10.0% |
| !! | CATAATAATAAATAAAAAAG+TGG | - | chr5_4:13662225-13662244 | None:intergenic | 10.0% |
| !! | ACAATTCAAATTCAATAAAA+GGG | - | chr5_4:13660289-13660308 | None:intergenic | 15.0% |
| !! | AACAATTCAAATTCAATAAA+AGG | - | chr5_4:13660290-13660309 | None:intergenic | 15.0% |
| !! | ATTATATGATTATGTATTCT+GGG | + | chr5_4:13660317-13660336 | Msa0839020:intron | 15.0% |
| !!! | TATTTTATTAATAGGAATCA+TGG | + | chr5_4:13661858-13661877 | Msa0839020:intron | 15.0% |
| !! | TTATAGACCAAATAATTTAT+AGG | - | chr5_4:13662631-13662650 | None:intergenic | 15.0% |
| !!! | TTTTTTGTTGTTTTTGTTTG+TGG | + | chr5_4:13659952-13659971 | Msa0839020:intron | 20.0% |
| !!! | TTTTTGTTGTTTTTGTTTGT+GGG | + | chr5_4:13659953-13659972 | Msa0839020:intron | 20.0% |
| !! | GATTATATGATTATGTATTC+TGG | + | chr5_4:13660316-13660335 | Msa0839020:intron | 20.0% |
| !! | AATACAAATTGATTAAAGCA+GGG | - | chr5_4:13660798-13660817 | None:intergenic | 20.0% |
| !! | ACATTTATATATCATTCACA+GGG | - | chr5_4:13660872-13660891 | None:intergenic | 20.0% |
| !! | TACATTTATATATCATTCAC+AGG | - | chr5_4:13660873-13660892 | None:intergenic | 20.0% |
| !!! | TATTGATTTCTTTATGTATG+TGG | + | chr5_4:13661057-13661076 | Msa0839020:intron | 20.0% |
| !!! | GAATATGTTTTTTGATTTCT+TGG | + | chr5_4:13661440-13661459 | Msa0839020:intron | 20.0% |
| !! | TAAAATAAGTGTATAAAGCT+AGG | - | chr5_4:13661845-13661864 | None:intergenic | 20.0% |
| !!! | TTTTTTAGGAAAGAAAAAGA+GGG | + | chr5_4:13662000-13662019 | Msa0839020:CDS | 20.0% |
| !! | AAAGATTACTTTATCAGATT+TGG | + | chr5_4:13662042-13662061 | Msa0839020:CDS | 20.0% |
| !! | CTAAATATTAGTTCAATAGT+TGG | - | chr5_4:13662320-13662339 | None:intergenic | 20.0% |
| !! | TATTTCAACCAAATACTATA+AGG | - | chr5_4:13662381-13662400 | None:intergenic | 20.0% |
| !! | ATGAAAATTTATAGTATCTG+AGG | + | chr5_4:13662406-13662425 | Msa0839020:intron | 20.0% |
| !! | TTGTAACTTAAACAAAATCA+CGG | - | chr5_4:13662532-13662551 | None:intergenic | 20.0% |
| !!! | TTGAAAAACAGAATTTTCTA+CGG | + | chr5_4:13662921-13662940 | Msa0839020:CDS | 20.0% |
| !!! | TTTTGTTGTTTTTGTTTGTG+GGG | + | chr5_4:13659954-13659973 | Msa0839020:intron | 25.0% |
| ! | GATTTCAACAATCTAAGAAT+TGG | - | chr5_4:13660129-13660148 | None:intergenic | 25.0% |
| !!! | TTTCTGAAGAGATTTTTGAA+GGG | + | chr5_4:13660154-13660173 | Msa0839020:CDS | 25.0% |
| !!! | ATTTTTGAAGGGTATAAGAA+TGG | + | chr5_4:13660165-13660184 | Msa0839020:CDS | 25.0% |
| !!! | GTACCAATGTTTTTAAATAG+CGG | + | chr5_4:13660381-13660400 | Msa0839020:intron | 25.0% |
| ! | CAATACAAATTGATTAAAGC+AGG | - | chr5_4:13660799-13660818 | None:intergenic | 25.0% |
| ! | AGTTATCTAATCTAACAAAC+AGG | - | chr5_4:13661015-13661034 | None:intergenic | 25.0% |
| !!! | CATGTTCTTCTTTAATTTTC+AGG | + | chr5_4:13661482-13661501 | Msa0839020:intron | 25.0% |
| ! | GACATAATTAACTCAACATT+AGG | - | chr5_4:13661934-13661953 | None:intergenic | 25.0% |
| !!! | GTTTTTTAGGAAAGAAAAAG+AGG | + | chr5_4:13661999-13662018 | Msa0839020:CDS | 25.0% |
| ! | ATAAAGTAATCTTTGCAACA+TGG | - | chr5_4:13662036-13662055 | None:intergenic | 25.0% |
| !! | GTAAATCATAGAAGTTTTCT+TGG | - | chr5_4:13662295-13662314 | None:intergenic | 25.0% |
| ! | ATTGCAAACCTTATAGTATT+TGG | + | chr5_4:13662370-13662389 | Msa0839020:intron | 25.0% |
| ! | GTACAGAAAAGATTTGTATA+AGG | - | chr5_4:13662449-13662468 | None:intergenic | 25.0% |
| ! | ACTGAAGCCTATAAATTATT+TGG | + | chr5_4:13662621-13662640 | Msa0839020:intron | 25.0% |
| !!! | ATTCTGTTTTTCAATAACTC+TGG | - | chr5_4:13662915-13662934 | None:intergenic | 25.0% |
| CCAAAAACAAACGAAAAAAG+CGG | + | chr5_4:13659679-13659698 | Msa0839020:five_prime_UTR | 30.0% | |
| !! | GTTTCTGAAGAGATTTTTGA+AGG | + | chr5_4:13660153-13660172 | Msa0839020:CDS | 30.0% |
| TTGGAATGTGAGAAAATTGA+GGG | - | chr5_4:13660230-13660249 | None:intergenic | 30.0% | |
| ATACCTTGTAACCAACAAAA+AGG | - | chr5_4:13660253-13660272 | None:intergenic | 30.0% | |
| ! | TTATGTATTCTGGGTTTGTT+TGG | + | chr5_4:13660326-13660345 | Msa0839020:intron | 30.0% |
| TAGCCGCTATTTAAAAACAT+TGG | - | chr5_4:13660387-13660406 | None:intergenic | 30.0% | |
| ! | TTTTTAAATAGCGGCTATAG+CGG | + | chr5_4:13660390-13660409 | Msa0839020:intron | 30.0% |
| TTATACAAAACAGTGTATCG+TGG | - | chr5_4:13660463-13660482 | None:intergenic | 30.0% | |
| TTGTGAAATAGCAACTATAG+CGG | + | chr5_4:13660487-13660506 | Msa0839020:intron | 30.0% | |
| !! | GTTGTTTTCATAAGCTATCT+TGG | - | chr5_4:13660650-13660669 | None:intergenic | 30.0% |
| GTTCAAAAATCAGTTACCAA+TGG | - | chr5_4:13661083-13661102 | None:intergenic | 30.0% | |
| TTTGGTGAAGTTAGAATTTG+AGG | + | chr5_4:13661308-13661327 | Msa0839020:intron | 30.0% | |
| TTGGTGAAGTTAGAATTTGA+GGG | + | chr5_4:13661309-13661328 | Msa0839020:intron | 30.0% | |
| ATTAAAGAAGAACATGACAG+AGG | - | chr5_4:13661478-13661497 | None:intergenic | 30.0% | |
| !! | ACAAATTTTGAAAGTTCAGC+AGG | + | chr5_4:13661730-13661749 | Msa0839020:CDS | 30.0% |
| GGAATAAAATGTTCAAAAGC+AGG | - | chr5_4:13661811-13661830 | None:intergenic | 30.0% | |
| ATTAGGAAGAAGTTATGCAT+TGG | - | chr5_4:13661917-13661936 | None:intergenic | 30.0% | |
| ! | AATTGGCATATCAAAGTACT+TGG | - | chr5_4:13662068-13662087 | None:intergenic | 30.0% |
| CGTCAAAGAATCTAAATGTT+GGG | + | chr5_4:13662095-13662114 | Msa0839020:CDS | 30.0% | |
| GTTGTCAATTAGCATATGTT+TGG | + | chr5_4:13662473-13662492 | Msa0839020:intron | 30.0% | |
| TATAAGAAGGCAAAAGATGT+TGG | + | chr5_4:13662793-13662812 | Msa0839020:CDS | 30.0% | |
| AAAGATGTTGGAAAGTGAAA+AGG | + | chr5_4:13662805-13662824 | Msa0839020:CDS | 30.0% | |
| AAAAGGAAAACATAGAGAAG+AGG | + | chr5_4:13662822-13662841 | Msa0839020:CDS | 30.0% | |
| TCAATTTGTATGTCCATGAA+GGG | - | chr5_4:13662848-13662867 | None:intergenic | 30.0% | |
| ! | AAAACAGAATTTTCTACGGT+TGG | + | chr5_4:13662925-13662944 | Msa0839020:CDS | 30.0% |
| !!! | CCGCTTTTTTCGTTTGTTTT+TGG | - | chr5_4:13659682-13659701 | None:intergenic | 35.0% |
| GAAGATGAAGAAGAAGAAGT+TGG | - | chr5_4:13659779-13659798 | None:intergenic | 35.0% | |
| CTTCTTCTTCTTCATCTTCA+TGG | + | chr5_4:13659780-13659799 | Msa0839020:exon | 35.0% | |
| !!! | TGTGGGGTGTTTTTTGTTTT+TGG | + | chr5_4:13659970-13659989 | Msa0839020:intron | 35.0% |
| !!! | GTGGGGTGTTTTTTGTTTTT+GGG | + | chr5_4:13659971-13659990 | Msa0839020:intron | 35.0% |
| !!! | TGGGGTGTTTTTTGTTTTTG+GGG | + | chr5_4:13659972-13659991 | Msa0839020:intron | 35.0% |
| !! | GAGTTTGTGTTTTCTGAGAA+TGG | + | chr5_4:13660078-13660097 | Msa0839020:CDS | 35.0% |
| ! | AAGGGTATAAGAATGGAGTT+TGG | + | chr5_4:13660172-13660191 | Msa0839020:CDS | 35.0% |
| GTTGGAATGTGAGAAAATTG+AGG | - | chr5_4:13660231-13660250 | None:intergenic | 35.0% | |
| ! | TCACATTCCAACCTTTTTGT+TGG | + | chr5_4:13660239-13660258 | Msa0839020:CDS | 35.0% |
| CTTGTAACCAACAAAAAGGT+TGG | - | chr5_4:13660249-13660268 | None:intergenic | 35.0% | |
| !! | CAACCTTTTTGTTGGTTACA+AGG | + | chr5_4:13660247-13660266 | Msa0839020:CDS | 35.0% |
| ! | GTTATAGTGCTATTGCATAG+CGG | + | chr5_4:13660414-13660433 | Msa0839020:intron | 35.0% |
| ! | CATAGCGGAATTTGAACAAA+CGG | + | chr5_4:13660429-13660448 | Msa0839020:intron | 35.0% |
| ACTAAGTTGTTTATCCTGAC+AGG | + | chr5_4:13660743-13660762 | Msa0839020:intron | 35.0% | |
| CTAAGTTGTTTATCCTGACA+GGG | + | chr5_4:13660744-13660763 | Msa0839020:intron | 35.0% | |
| TAAAGTCCCTACACAAGTAA+CGG | + | chr5_4:13660920-13660939 | Msa0839020:intron | 35.0% | |
| TTCTTTATGTATGTGGCCAT+TGG | + | chr5_4:13661064-13661083 | Msa0839020:intron | 35.0% | |
| !! | TGGTAACTGATTTTTGAACC+CGG | + | chr5_4:13661084-13661103 | Msa0839020:intron | 35.0% |
| TTTCGTAACTGTAAGGAATC+CGG | - | chr5_4:13661106-13661125 | None:intergenic | 35.0% | |
| GATTCCTTACAGTTACGAAA+TGG | + | chr5_4:13661106-13661125 | Msa0839020:intron | 35.0% | |
| GAAATGGTGCAGTAAATGTT+TGG | + | chr5_4:13661122-13661141 | Msa0839020:intron | 35.0% | |
| CTCGGATTTCAAATCGTATT+TGG | - | chr5_4:13661198-13661217 | None:intergenic | 35.0% | |
| AGGATGAAAATCAGACAACT+CGG | - | chr5_4:13661216-13661235 | None:intergenic | 35.0% | |
| ATCATTAAGCAGGTTTGGAA+TGG | - | chr5_4:13661524-13661543 | None:intergenic | 35.0% | |
| TCTCCACATGATATACAAGT+TGG | + | chr5_4:13661543-13661562 | Msa0839020:CDS | 35.0% | |
| GTTCCAACTTGTATATCATG+TGG | - | chr5_4:13661549-13661568 | None:intergenic | 35.0% | |
| ! | GTATCTTTTCGTTCCTTCTT+CGG | - | chr5_4:13661571-13661590 | None:intergenic | 35.0% |
| !!! | GCAAGACTTTTTTTAGTGGT+TGG | - | chr5_4:13661642-13661661 | None:intergenic | 35.0% |
| !!! | ACAGGCAAGACTTTTTTTAG+TGG | - | chr5_4:13661646-13661665 | None:intergenic | 35.0% |
| GAACAACGTGATAATTGACT+GGG | - | chr5_4:13661789-13661808 | None:intergenic | 35.0% | |
| TTGATAAAGTGAGTGTTTGC+AGG | + | chr5_4:13661977-13661996 | Msa0839020:intron | 35.0% | |
| !!! | TGAGTGTTTGCAGGTTTTTT+AGG | + | chr5_4:13661986-13662005 | Msa0839020:intron | 35.0% |
| GCGTCAAAGAATCTAAATGT+TGG | + | chr5_4:13662094-13662113 | Msa0839020:CDS | 35.0% | |
| ! | AAAAGGAAGTGCAGAGAATT+TGG | + | chr5_4:13662130-13662149 | Msa0839020:CDS | 35.0% |
| AGTGATTTGATCTTCCTATG+AGG | - | chr5_4:13662169-13662188 | None:intergenic | 35.0% | |
| ! | TATCTGAGGCTTCTTTAGAT+AGG | + | chr5_4:13662420-13662439 | Msa0839020:intron | 35.0% |
| ! | TAGCTTTTGTGCCAAAATCA+CGG | + | chr5_4:13662556-13662575 | Msa0839020:intron | 35.0% |
| GAGTTCACTTGAAGATTGTT+AGG | - | chr5_4:13662696-13662715 | None:intergenic | 35.0% | |
| GAGATGTTGCAATGTGTATA+AGG | - | chr5_4:13662718-13662737 | None:intergenic | 35.0% | |
| CTCAATTTGTATGTCCATGA+AGG | - | chr5_4:13662849-13662868 | None:intergenic | 35.0% | |
| AAATTGAGACCAAGAGATTC+AGG | + | chr5_4:13662861-13662880 | Msa0839020:CDS | 35.0% | |
| ! | AGAAGTTGGAGAAAGCATGA+AGG | - | chr5_4:13659765-13659784 | None:intergenic | 40.0% |
| TTCAACAACACCATTCAACC+AGG | + | chr5_4:13659829-13659848 | Msa0839020:CDS | 40.0% | |
| ATTGCATGTACCTGGTTGAA+TGG | - | chr5_4:13659842-13659861 | None:intergenic | 40.0% | |
| !!! | GGGGTGTTTTTTGTTTTTGG+GGG | + | chr5_4:13659973-13659992 | Msa0839020:intron | 40.0% |
| !!! | GGGTGTTTTTTGTTTTTGGG+GGG | + | chr5_4:13659974-13659993 | Msa0839020:intron | 40.0% |
| TTTCTCCTCCATCACATTCA+CGG | - | chr5_4:13660044-13660063 | None:intergenic | 40.0% | |
| ! | TGAATGTGATGGAGGAGAAA+AGG | + | chr5_4:13660044-13660063 | Msa0839020:CDS | 40.0% |
| TGATTAAAGCAGGGAAACCT+TGG | - | chr5_4:13660789-13660808 | None:intergenic | 40.0% | |
| GGTGTGTACTGTGTACAAAT+TGG | + | chr5_4:13660845-13660864 | Msa0839020:intron | 40.0% | |
| TTCGTAACTGTAAGGAATCC+GGG | - | chr5_4:13661105-13661124 | None:intergenic | 40.0% | |
| TGCACCATTTCGTAACTGTA+AGG | - | chr5_4:13661113-13661132 | None:intergenic | 40.0% | |
| GTGCAGTAAATGTTTGGCAT+TGG | + | chr5_4:13661128-13661147 | Msa0839020:intron | 40.0% | |
| TCATCCTACAGTTGCAATTG+CGG | + | chr5_4:13661229-13661248 | Msa0839020:intron | 40.0% | |
| AGTATGCTGTGGAACAGTTA+GGG | - | chr5_4:13661288-13661307 | None:intergenic | 40.0% | |
| AAGTATGCTGTGGAACAGTT+AGG | - | chr5_4:13661289-13661308 | None:intergenic | 40.0% | |
| ! | ACTGTTCCACAGCATACTTT+TGG | + | chr5_4:13661290-13661309 | Msa0839020:intron | 40.0% |
| ! | ACTTCACCAAAAGTATGCTG+TGG | - | chr5_4:13661299-13661318 | None:intergenic | 40.0% |
| GAAGTTAGAATTTGAGGGCA+TGG | + | chr5_4:13661314-13661333 | Msa0839020:intron | 40.0% | |
| AGAACATGACAGAGGAAGTT+AGG | - | chr5_4:13661470-13661489 | None:intergenic | 40.0% | |
| TTTCAGGAATCCAAAGCTTC+AGG | + | chr5_4:13661498-13661517 | Msa0839020:intron | 40.0% | |
| TGGAGATCATTAAGCAGGTT+TGG | - | chr5_4:13661529-13661548 | None:intergenic | 40.0% | |
| TCATGTGGAGATCATTAAGC+AGG | - | chr5_4:13661534-13661553 | None:intergenic | 40.0% | |
| ! | ATACAAGTTGGAACCGAAGA+AGG | + | chr5_4:13661555-13661574 | Msa0839020:CDS | 40.0% |
| TTGAGATCCTGATTAAGCAC+AGG | - | chr5_4:13661664-13661683 | None:intergenic | 40.0% | |
| TCTTCCTTATGAAGAAGACG+AGG | + | chr5_4:13661687-13661706 | Msa0839020:CDS | 40.0% | |
| ! | GGAGCATTTGAATCTAAACC+CGG | - | chr5_4:13661768-13661787 | None:intergenic | 40.0% |
| GGAACAACGTGATAATTGAC+TGG | - | chr5_4:13661790-13661809 | None:intergenic | 40.0% | |
| TAAAGCTAGGACTGAGTTGT+TGG | - | chr5_4:13661832-13661851 | None:intergenic | 40.0% | |
| AATCTTTGCAACATGGTCAC+TGG | - | chr5_4:13662029-13662048 | None:intergenic | 40.0% | |
| TTCTTTGACGCTTCTGCAAT+TGG | - | chr5_4:13662085-13662104 | None:intergenic | 40.0% | |
| TTGGGCTTACTGTTCTCAAA+AGG | + | chr5_4:13662113-13662132 | Msa0839020:CDS | 40.0% | |
| CAGTCTCATTCATGATCTTC+AGG | + | chr5_4:13662192-13662211 | Msa0839020:CDS | 40.0% | |
| TATAGGCTTCAGTGCATGTT+TGG | - | chr5_4:13662614-13662633 | None:intergenic | 40.0% | |
| AAGAGGCAAAACATCAGGAA+AGG | + | chr5_4:13662744-13662763 | Msa0839020:CDS | 40.0% | |
| AGAGGCAAAACATCAGGAAA+GGG | + | chr5_4:13662745-13662764 | Msa0839020:CDS | 40.0% | |
| TTGCCTTCTTATAACTGCCA+TGG | - | chr5_4:13662786-13662805 | None:intergenic | 40.0% | |
| AACATCTTGCCTGAATCTCT+TGG | - | chr5_4:13662873-13662892 | None:intergenic | 40.0% | |
| !! | GGCAAGATGTTTTCAAGAGA+AGG | + | chr5_4:13662882-13662901 | Msa0839020:CDS | 40.0% |
| GAGAAGAAGAGTAATGAGCG+AGG | - | chr5_4:13659809-13659828 | None:intergenic | 45.0% | |
| GGTATTGCATTGCATGTACC+TGG | - | chr5_4:13659850-13659869 | None:intergenic | 45.0% | |
| CATGTGTACCGTGAATGTGA+TGG | + | chr5_4:13660033-13660052 | Msa0839020:CDS | 45.0% | |
| TTGGTCAGGCCTAAAAGCTA+AGG | - | chr5_4:13660770-13660789 | None:intergenic | 45.0% | |
| !! | TTAGCTTTTAGGCCTGACCA+AGG | + | chr5_4:13660769-13660788 | Msa0839020:intron | 45.0% |
| GATTCGCCGTTACTTGTGTA+GGG | - | chr5_4:13660929-13660948 | None:intergenic | 45.0% | |
| TGATTCGCCGTTACTTGTGT+AGG | - | chr5_4:13660930-13660949 | None:intergenic | 45.0% | |
| ! | TTGCTGCAAATGTTGACTGC+AGG | + | chr5_4:13661252-13661271 | Msa0839020:intron | 45.0% |
| ! | TGCTGCAAATGTTGACTGCA+GGG | + | chr5_4:13661253-13661272 | Msa0839020:intron | 45.0% |
| CTGTGGAACAGTTAGGGAAA+TGG | - | chr5_4:13661282-13661301 | None:intergenic | 45.0% | |
| ! | TTGAGGGCATGGTTCAACAA+TGG | + | chr5_4:13661325-13661344 | Msa0839020:intron | 45.0% |
| ! | TTTGGAATGGCCTGAAGCTT+TGG | - | chr5_4:13661511-13661530 | None:intergenic | 45.0% |
| TCTGCAAGGGAAGAATTGGA+AGG | + | chr5_4:13661601-13661620 | Msa0839020:CDS | 45.0% | |
| AGTCTTGCCTGTGCTTAATC+AGG | + | chr5_4:13661654-13661673 | Msa0839020:CDS | 45.0% | |
| TCAGCCTCGTCTTCTTCATA+AGG | - | chr5_4:13661694-13661713 | None:intergenic | 45.0% | |
| CAGCAGGTTTGAAAGTTCAC+CGG | + | chr5_4:13661746-13661765 | Msa0839020:intron | 45.0% | |
| AGCAGGTTTGAAAGTTCACC+GGG | + | chr5_4:13661747-13661766 | Msa0839020:intron | 45.0% | |
| GAGAATTTGGTATTCCTCGC+TGG | + | chr5_4:13662143-13662162 | Msa0839020:CDS | 45.0% | |
| ! | CTTTTGTGCCAAAATCACGG+TGG | + | chr5_4:13662559-13662578 | Msa0839020:intron | 45.0% |
| GCTTCAGTGCATGTTTGGAT+TGG | - | chr5_4:13662609-13662628 | None:intergenic | 45.0% | |
| ACACATTGCAACATCTCTGC+AGG | + | chr5_4:13662721-13662740 | Msa0839020:intron | 45.0% | |
| CAGCCATGGCAGTTATAAGA+AGG | + | chr5_4:13662780-13662799 | Msa0839020:CDS | 45.0% | |
| !! | AAATTGAAAAAATAAAAAAT+GGG | - | chr5_4:13659871-13659890 | None:intergenic | 5.0% |
| !! | AAAATTGAAAAAATAAAAAA+TGG | - | chr5_4:13659872-13659891 | None:intergenic | 5.0% |
| !!! | AAAATTTGATTTTTTTTTAA+TGG | + | chr5_4:13659908-13659927 | Msa0839020:intron | 5.0% |
| !!! | AAATTTGATTTTTTTTTAAT+GGG | + | chr5_4:13659909-13659928 | Msa0839020:intron | 5.0% |
| GTGTACCGTGAATGTGATGG+AGG | + | chr5_4:13660036-13660055 | Msa0839020:CDS | 50.0% | |
| TAGCAACTATAGCGGCGCTA+TGG | + | chr5_4:13660495-13660514 | Msa0839020:intron | 50.0% | |
| CTAAAAGCTAAGGCCCTGTC+AGG | - | chr5_4:13660760-13660779 | None:intergenic | 50.0% | |
| !! | CTGACAGGGCCTTAGCTTTT+AGG | + | chr5_4:13660758-13660777 | Msa0839020:intron | 50.0% |
| AAAGCAGGGAAACCTTGGTC+AGG | - | chr5_4:13660784-13660803 | None:intergenic | 50.0% | |
| CAGCACACAGAGCAGCAAAA+TGG | + | chr5_4:13660824-13660843 | Msa0839020:intron | 50.0% | |
| GCAACCGCAATTGCAACTGT+AGG | - | chr5_4:13661236-13661255 | None:intergenic | 50.0% | |
| GGGCATGGTTCAACAATGGA+TGG | + | chr5_4:13661329-13661348 | Msa0839020:intron | 50.0% | |
| ATACACCAGAGAGCTCTGCA+AGG | + | chr5_4:13661587-13661606 | Msa0839020:CDS | 50.0% | |
| TACACCAGAGAGCTCTGCAA+GGG | + | chr5_4:13661588-13661607 | Msa0839020:CDS | 50.0% | |
| GAGCTCTGCAAGGGAAGAAT+TGG | + | chr5_4:13661597-13661616 | Msa0839020:CDS | 50.0% | |
| AGAAGACGAGGCTGAGTTAC+TGG | + | chr5_4:13661699-13661718 | Msa0839020:CDS | 50.0% | |
| ! | TGGCATTGAGACCCGAATCA+CGG | - | chr5_4:13662589-13662608 | None:intergenic | 50.0% |
| TGCAACATCTCTGCAGGAAG+AGG | + | chr5_4:13662727-13662746 | Msa0839020:intron | 50.0% | |
| GCAGGAAGAGGCAAAACATC+AGG | + | chr5_4:13662739-13662758 | Msa0839020:intron | 50.0% | |
| GGCAAAACATCAGGAAAGGG+AGG | + | chr5_4:13662748-13662767 | Msa0839020:CDS | 50.0% | |
| GGAGGATAAAGATGCAGCCA+TGG | + | chr5_4:13662766-13662785 | Msa0839020:CDS | 50.0% | |
| CATAGAGAAGAGGCCCTTCA+TGG | + | chr5_4:13662832-13662851 | Msa0839020:CDS | 50.0% | |
| GCTATGGCAGTGTTGCATGG+CGG | + | chr5_4:13660511-13660530 | Msa0839020:intron | 55.0% | |
| TCTTCCCTTGCAGAGCTCTC+TGG | - | chr5_4:13661595-13661614 | None:intergenic | 55.0% | |
| ! | GTATTCCTCGCTGGCCTCAT+AGG | + | chr5_4:13662152-13662171 | Msa0839020:CDS | 55.0% |
| ATCTTCCTATGAGGCCAGCG+AGG | - | chr5_4:13662160-13662179 | None:intergenic | 55.0% | |
| ! | ACGGTGAGCCACCGTGATTT+TGG | - | chr5_4:13662570-13662589 | None:intergenic | 55.0% |
| GGCGCTATGGCAGTGTTGCA+TGG | + | chr5_4:13660508-13660527 | Msa0839020:intron | 60.0% | |
| CACGGTGGCTCACCGTGATT+CGG | + | chr5_4:13662574-13662593 | Msa0839020:intron | 60.0% | |
| ACGGTGGCTCACCGTGATTC+GGG | + | chr5_4:13662575-13662594 | Msa0839020:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 13659654 | 13662970 | 13659654 | ID=Msa0839020;Name=Msa0839020 |
| chr5_4 | mRNA | 13659654 | 13662970 | 13659654 | ID=Msa0839020-mRNA-1;Parent=Msa0839020;Name=Msa0839020-mRNA-1;_AED=0.08;_eAED=0.08;_QI=145|1|0.8|1|1|1|5|0|331 |
| chr5_4 | exon | 13659654 | 13659850 | 13659654 | ID=Msa0839020-mRNA-1:exon:6069;Parent=Msa0839020-mRNA-1 |
| chr5_4 | exon | 13660016 | 13660268 | 13660016 | ID=Msa0839020-mRNA-1:exon:6070;Parent=Msa0839020-mRNA-1 |
| chr5_4 | exon | 13661504 | 13661751 | 13661504 | ID=Msa0839020-mRNA-1:exon:6071;Parent=Msa0839020-mRNA-1 |
| chr5_4 | exon | 13661999 | 13662213 | 13661999 | ID=Msa0839020-mRNA-1:exon:6072;Parent=Msa0839020-mRNA-1 |
| chr5_4 | exon | 13662743 | 13662970 | 13662743 | ID=Msa0839020-mRNA-1:exon:6073;Parent=Msa0839020-mRNA-1 |
| chr5_4 | five_prime_UTR | 13659654 | 13659798 | 13659654 | ID=Msa0839020-mRNA-1:five_prime_utr;Parent=Msa0839020-mRNA-1 |
| chr5_4 | CDS | 13659799 | 13659850 | 13659799 | ID=Msa0839020-mRNA-1:cds;Parent=Msa0839020-mRNA-1 |
| chr5_4 | CDS | 13660016 | 13660268 | 13660016 | ID=Msa0839020-mRNA-1:cds;Parent=Msa0839020-mRNA-1 |
| chr5_4 | CDS | 13661504 | 13661751 | 13661504 | ID=Msa0839020-mRNA-1:cds;Parent=Msa0839020-mRNA-1 |
| chr5_4 | CDS | 13661999 | 13662213 | 13661999 | ID=Msa0839020-mRNA-1:cds;Parent=Msa0839020-mRNA-1 |
| chr5_4 | CDS | 13662743 | 13662970 | 13662743 | ID=Msa0839020-mRNA-1:cds;Parent=Msa0839020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
