AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0185460

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0185460 MtrunA17_Chr6g0461661 92.553 376 19 1 2 368 4 379 0.0 706
Msa0185460 MtrunA17_Chr7g0253011 58.853 401 110 15 1 364 1 383 1.98e-138 399
Msa0185460 MtrunA17_Chr4g0060931 49.854 343 148 11 5 339 6 332 7.80e-99 297
Msa0185460 MtrunA17_Chr3g0091921 61.792 212 75 5 1 211 1 207 1.80e-88 269
Msa0185460 MtrunA17_Chr6g0453451 61.576 203 68 4 9 210 13 206 3.23e-84 258
Msa0185460 MtrunA17_Chr2g0316971 72.258 155 43 0 16 170 23 177 3.25e-82 255
Msa0185460 MtrunA17_Chr1g0147421 63.743 171 57 2 16 185 27 193 2.32e-73 232
Msa0185460 MtrunA17_Chr7g0217721 47.761 268 113 6 11 255 14 277 9.48e-71 225
Msa0185460 MtrunA17_Chr6g0484441 64.286 168 51 4 15 180 4 164 5.66e-70 222
Msa0185460 MtrunA17_Chr3g0139331 46.559 247 108 4 16 253 11 242 3.08e-68 218
Msa0185460 MtrunA17_Chr7g0217711 66.434 143 45 2 11 152 14 154 9.42e-65 203
Msa0185460 MtrunA17_Chr3g0144271 71.318 129 36 1 16 143 23 151 2.99e-63 207
Msa0185460 MtrunA17_Chr2g0312321 53.191 188 76 5 16 203 11 186 1.55e-60 197
Msa0185460 MtrunA17_Chr1g0183741 53.503 157 67 2 16 172 10 160 3.46e-55 182
Msa0185460 MtrunA17_Chr2g0309331 53.750 160 66 3 14 170 8 162 5.64e-54 181
Msa0185460 MtrunA17_Chr4g0017921 54.375 160 61 4 16 171 8 159 5.25e-53 179
Msa0185460 MtrunA17_Chr7g0261411 54.305 151 63 2 16 166 10 154 7.64e-53 177
Msa0185460 MtrunA17_Chr8g0372121 51.220 164 71 4 16 176 6 163 8.34e-53 177
Msa0185460 MtrunA17_Chr8g0359921 51.190 168 80 1 14 181 12 177 9.36e-53 177
Msa0185460 MtrunA17_Chr2g0309891 50.299 167 77 4 13 177 3 165 1.39e-52 177
Msa0185460 MtrunA17_Chr4g0056541 49.701 167 75 3 16 179 7 167 1.49e-52 178
Msa0185460 MtrunA17_Chr2g0318101 46.961 181 86 3 1 172 1 180 1.50e-52 177
Msa0185460 MtrunA17_Chr5g0417791 50.000 160 76 2 14 171 1 158 1.70e-52 175
Msa0185460 MtrunA17_Chr4g0047841 47.727 176 71 2 16 170 15 190 4.34e-52 176
Msa0185460 MtrunA17_Chr7g0252971 47.486 179 83 4 15 183 7 184 5.62e-52 176
Msa0185460 MtrunA17_Chr8g0346001 50.303 165 70 4 16 170 15 177 4.18e-51 176
Msa0185460 MtrunA17_Chr6g0481091 46.328 177 87 4 13 185 3 175 4.53e-51 170
Msa0185460 MtrunA17_Chr5g0405211 48.795 166 76 4 16 178 8 167 6.27e-51 173
Msa0185460 MtrunA17_Chr3g0109821 51.235 162 72 4 13 171 3 160 6.86e-51 180
Msa0185460 MtrunA17_Chr3g0124761 50.581 172 76 4 14 181 5 171 6.95e-51 171
Msa0185460 MtrunA17_Chr8g0361731 38.039 255 135 5 1 234 1 253 8.71e-51 174
Msa0185460 MtrunA17_Chr3g0113001 40.647 278 139 6 61 332 10 267 1.23e-50 171
Msa0185460 MtrunA17_Chr5g0433781 49.398 166 78 3 13 176 3 164 2.28e-50 178
Msa0185460 MtrunA17_Chr4g0018391 50.000 156 69 3 16 168 7 156 2.43e-50 172
Msa0185460 MtrunA17_Chr2g0318081 46.829 205 91 5 14 206 14 212 4.42e-50 171
Msa0185460 MtrunA17_Chr5g0398971 51.266 158 66 5 16 168 7 158 1.77e-49 169
Msa0185460 MtrunA17_Chr8g0384721 50.307 163 64 3 14 168 5 158 5.29e-49 166
Msa0185460 MtrunA17_Chr7g0263931 51.299 154 73 2 14 165 9 162 5.48e-49 167
Msa0185460 MtrunA17_Chr5g0417001 45.161 186 94 3 1 180 1 184 1.28e-48 168
Msa0185460 MtrunA17_Chr4g0042561 47.799 159 79 2 15 171 8 164 1.36e-48 165
Msa0185460 MtrunA17_Chr3g0130731 48.193 166 82 2 14 178 5 167 6.01e-48 164
Msa0185460 MtrunA17_Chr7g0214071 47.619 168 80 4 1 168 1 160 7.16e-48 162
Msa0185460 MtrunA17_Chr6g0453131 45.029 171 83 3 7 170 9 175 2.21e-47 165
Msa0185460 MtrunA17_Chr1g0200561 47.436 156 73 3 16 168 19 168 3.08e-47 164
Msa0185460 MtrunA17_Chr2g0326361 48.750 160 80 2 8 165 6 165 3.15e-47 163
Msa0185460 MtrunA17_Chr1g0201021 44.175 206 102 7 19 217 22 221 8.91e-47 167
Msa0185460 MtrunA17_Chr5g0428991 54.348 138 54 3 16 146 25 160 2.55e-44 161
Msa0185460 MtrunA17_Chr5g0400461 48.684 152 63 3 16 152 6 157 2.60e-44 155
Msa0185460 MtrunA17_Chr3g0128151 47.753 178 69 5 16 178 22 190 3.44e-44 160
Msa0185460 MtrunA17_Chr4g0054791 44.509 173 85 4 12 178 2 169 5.00e-43 152
Msa0185460 MtrunA17_Chr2g0311661 42.268 194 97 6 1 182 9 199 2.34e-42 149
Msa0185460 MtrunA17_Chr2g0311651 43.590 195 91 9 1 182 9 197 2.37e-42 150
Msa0185460 MtrunA17_Chr3g0130101 48.366 153 71 4 19 168 10 157 2.99e-42 150
Msa0185460 MtrunA17_Chr5g0442771 51.825 137 64 2 8 143 11 146 3.24e-42 149
Msa0185460 MtrunA17_Chr8g0364791 47.436 156 74 4 16 168 6 156 2.78e-41 150
Msa0185460 MtrunA17_Chr1g0197351 40.191 209 108 5 16 214 42 243 3.59e-41 150
Msa0185460 MtrunA17_Chr1g0197361 49.045 157 66 6 19 169 11 159 3.83e-41 152
Msa0185460 MtrunA17_Chr4g0076731 52.800 125 58 1 19 143 57 180 4.20e-41 149
Msa0185460 MtrunA17_Chr3g0092671 49.367 158 66 6 19 170 8 157 1.84e-40 149
Msa0185460 MtrunA17_Chr3g0128111 46.104 154 77 3 19 170 45 194 2.94e-40 142
Msa0185460 MtrunA17_Chr4g0038751 44.172 163 82 4 7 168 7 161 3.44e-40 144
Msa0185460 MtrunA17_Chr3g0113031 36.897 290 157 8 79 364 3 270 8.29e-40 142
Msa0185460 MtrunA17_Chr8g0384201 46.154 156 76 4 16 168 6 156 2.73e-39 145
Msa0185460 MtrunA17_Chr8g0345671 48.092 131 64 3 15 142 10 139 2.42e-35 133
Msa0185460 MtrunA17_Chr8g0385991 37.821 156 92 2 16 168 14 167 1.29e-34 127
Msa0185460 MtrunA17_Chr3g0131911 37.000 200 99 6 16 191 14 210 2.74e-34 126
Msa0185460 MtrunA17_Chr8g0345691 46.154 130 66 3 16 142 12 140 1.42e-32 126
Msa0185460 MtrunA17_Chr8g0345711 43.846 130 69 3 16 142 12 140 1.83e-31 117
Msa0185460 MtrunA17_Chr2g0321741 43.750 128 65 3 35 157 11 136 4.99e-31 120
Msa0185460 MtrunA17_Chr4g0026141 42.537 134 67 4 16 142 5 135 5.17e-29 113
Msa0185460 MtrunA17_Chr2g0321631 40.299 134 73 3 15 142 3 135 2.73e-28 110
Msa0185460 MtrunA17_Chr8g0345731 41.353 133 71 5 16 142 24 155 3.10e-27 105
Msa0185460 MtrunA17_Chr8g0345701 40.972 144 65 5 16 142 7 147 2.96e-26 103
Msa0185460 MtrunA17_Chr4g0050701 37.500 128 72 1 16 143 11 130 3.44e-24 98.2
Msa0185460 MtrunA17_Chr7g0266701 38.060 134 76 4 15 142 3 135 3.63e-24 100
Msa0185460 MtrunA17_Chr7g0243371 51.282 78 38 0 69 146 17 94 4.41e-24 95.9
Msa0185460 MtrunA17_Chr8g0345721 33.533 167 77 4 13 147 32 196 1.28e-23 97.4
Msa0185460 MtrunA17_Chr8g0345741 39.316 117 66 3 30 142 4 119 8.48e-23 93.6
Msa0185460 MtrunA17_Chr7g0251661 35.821 134 80 4 10 141 4 133 1.08e-19 85.1
Msa0185460 MtrunA17_Chr8g0384351 34.591 159 80 5 10 168 4 138 7.10e-18 80.9
Msa0185460 MtrunA17_Chr7g0251651 33.571 140 86 5 10 147 12 146 1.88e-17 79.7
Msa0185460 MtrunA17_Chr7g0251671 34.109 129 79 4 15 141 9 133 6.86e-17 77.4
Msa0185460 MtrunA17_Chr3g0113011 57.692 52 22 0 11 62 14 65 6.99e-17 74.7
Msa0185460 MtrunA17_Chr4g0046431 32.864 213 103 10 16 201 68 267 1.47e-16 79.7
Msa0185460 MtrunA17_Chr3g0130321 31.111 180 99 8 16 181 7 175 2.92e-15 73.9
Msa0185460 MtrunA17_Chr3g0113041 53.846 52 24 0 11 62 14 65 7.21e-15 68.9
Msa0185460 MtrunA17_Chr7g0274971 28.977 176 106 7 22 189 11 175 1.18e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0185460 AT5G18270.2 50.000 354 122 11 1 347 5 310 1.73e-106 316
Msa0185460 AT5G18270.1 49.718 354 123 11 1 347 5 310 3.29e-106 315
Msa0185460 AT3G04060.1 46.900 371 157 8 2 368 4 338 1.43e-99 298
Msa0185460 AT5G07680.1 46.175 366 149 12 5 364 6 329 8.60e-91 276
Msa0185460 AT5G07680.2 46.779 357 142 12 14 364 1 315 1.07e-89 273
Msa0185460 AT5G61430.1 44.355 372 147 12 1 356 1 328 6.60e-89 271
Msa0185460 AT3G29035.1 49.495 297 121 7 12 290 20 305 8.13e-83 255
Msa0185460 AT5G39610.1 70.303 165 47 1 5 169 9 171 2.16e-81 250
Msa0185460 AT3G15170.1 55.660 212 86 2 11 215 16 226 2.36e-77 241
Msa0185460 AT5G53950.1 67.949 156 50 0 16 171 17 172 2.56e-77 243
Msa0185460 AT1G76420.1 64.103 156 47 2 16 168 22 171 1.74e-69 221
Msa0185460 AT3G18400.1 63.750 160 53 2 15 174 4 158 3.19e-69 220
Msa0185460 AT2G24430.2 58.333 168 67 1 1 168 1 165 1.16e-67 216
Msa0185460 AT2G24430.1 58.333 168 67 1 1 168 1 165 1.16e-67 216
Msa0185460 AT1G56010.2 49.761 209 88 5 16 216 19 218 1.31e-62 203
Msa0185460 AT3G12977.1 54.487 156 68 2 15 170 17 169 2.58e-61 198
Msa0185460 AT5G61430.2 41.234 308 121 12 65 356 2 265 4.83e-59 192
Msa0185460 AT4G10350.1 52.830 159 68 3 16 171 9 163 5.88e-54 181
Msa0185460 AT1G33280.1 52.830 159 65 3 16 171 8 159 2.67e-53 179
Msa0185460 AT3G17730.1 50.932 161 73 3 13 171 3 159 1.01e-52 175
Msa0185460 AT4G27410.2 40.741 243 116 5 14 234 12 248 4.15e-52 175
Msa0185460 AT1G12260.2 49.701 167 75 3 16 179 7 167 8.25e-52 176
Msa0185460 AT5G08790.1 50.602 166 64 3 14 170 5 161 9.50e-52 174
Msa0185460 AT1G12260.1 49.708 171 69 5 16 179 7 167 1.04e-51 177
Msa0185460 AT3G61910.1 47.953 171 71 4 16 171 11 178 1.82e-51 175
Msa0185460 AT3G03200.1 51.829 164 74 3 13 174 3 163 2.23e-51 178
Msa0185460 AT1G61110.1 50.909 165 70 3 16 170 16 179 3.24e-51 174
Msa0185460 AT4G36160.2 48.795 166 76 4 6 168 4 163 3.39e-51 175
Msa0185460 AT4G36160.1 47.727 176 81 5 11 181 5 174 4.91e-51 175
Msa0185460 AT4G36160.3 47.727 176 81 5 11 181 5 174 4.91e-51 175
Msa0185460 AT2G46770.1 47.368 171 74 4 16 172 16 184 5.50e-51 174
Msa0185460 AT1G77450.1 48.603 179 84 3 9 184 3 176 6.45e-51 171
Msa0185460 AT4G28530.1 44.240 217 90 6 16 209 10 218 1.14e-50 173
Msa0185460 AT3G04070.2 50.000 166 75 4 16 173 10 175 1.20e-50 173
Msa0185460 AT2G18060.3 47.929 169 79 4 12 177 5 167 2.74e-50 172
Msa0185460 AT2G18060.1 47.929 169 79 4 12 177 5 167 2.74e-50 172
Msa0185460 AT5G63790.2 51.266 158 71 2 14 168 58 212 3.40e-50 171
Msa0185460 AT1G79580.3 50.625 160 70 3 14 170 15 168 3.41e-50 172
Msa0185460 AT1G79580.5 50.625 160 70 3 14 170 15 168 3.41e-50 172
Msa0185460 AT1G79580.4 50.625 160 70 3 14 170 15 168 3.41e-50 172
Msa0185460 AT1G79580.2 50.625 160 70 3 14 170 15 168 3.41e-50 172
Msa0185460 AT1G79580.1 50.625 160 70 3 14 170 15 168 3.41e-50 172
Msa0185460 AT5G63790.1 51.266 158 71 2 14 168 48 202 3.57e-50 171
Msa0185460 AT5G17260.1 50.610 164 76 3 13 174 3 163 6.04e-50 174
Msa0185460 AT5G04410.1 53.165 158 66 4 16 170 9 161 6.49e-50 176
Msa0185460 AT1G62700.1 51.282 156 67 3 16 168 7 156 8.97e-50 172
Msa0185460 AT1G62700.2 51.282 156 67 3 16 168 7 156 8.97e-50 172
Msa0185460 AT1G01720.1 48.193 166 81 2 12 175 3 165 1.71e-49 168
Msa0185460 AT1G65910.1 48.171 164 79 3 13 174 3 162 4.20e-49 175
Msa0185460 AT1G71930.2 49.682 157 68 5 16 168 9 158 4.62e-49 168
Msa0185460 AT1G71930.1 49.682 157 68 5 16 168 9 158 4.62e-49 168
Msa0185460 AT1G32770.1 47.619 168 75 3 16 172 16 181 6.38e-49 169
Msa0185460 AT1G26870.1 45.349 172 87 1 16 180 16 187 1.19e-48 169
Msa0185460 AT1G69490.1 49.682 157 75 3 16 170 9 163 1.36e-48 165
Msa0185460 AT3G04070.1 45.604 182 75 4 16 173 10 191 1.55e-48 167
Msa0185460 AT3G10500.1 52.229 157 67 4 16 169 9 160 1.71e-48 172
Msa0185460 AT5G39820.1 56.000 125 55 0 19 143 23 147 1.81e-48 167
Msa0185460 AT5G62380.2 50.641 156 68 4 16 168 7 156 2.27e-48 167
Msa0185460 AT5G62380.1 50.641 156 68 4 16 168 7 156 2.27e-48 167
Msa0185460 AT3G15500.1 48.538 171 80 4 14 183 12 175 3.68e-48 166
Msa0185460 AT5G13180.1 50.323 155 71 2 14 168 12 160 3.77e-48 164
Msa0185460 AT3G15510.1 46.875 160 76 2 20 170 21 180 5.02e-48 166
Msa0185460 AT5G66300.1 46.012 163 80 3 11 170 7 164 5.66e-48 164
Msa0185460 AT1G52890.1 50.000 164 76 3 14 176 12 170 7.57e-48 165
Msa0185460 AT4G27410.3 38.077 260 116 6 14 234 12 265 9.63e-48 164
Msa0185460 AT3G10480.1 53.125 160 66 4 16 171 27 181 1.43e-47 167
Msa0185460 AT5G46590.1 49.080 163 73 4 16 173 6 163 1.65e-47 163
Msa0185460 AT3G10480.2 52.532 158 69 3 16 171 27 180 3.04e-47 166
Msa0185460 AT3G10490.1 51.875 160 68 4 16 171 27 181 4.84e-47 160
Msa0185460 AT5G46590.2 49.032 155 73 3 16 165 6 159 1.57e-46 160
Msa0185460 AT1G54330.1 49.091 165 74 4 13 175 3 159 3.39e-46 160
Msa0185460 AT3G10490.2 51.875 160 68 4 16 171 27 181 5.16e-46 163
Msa0185460 AT1G33060.1 55.797 138 52 3 16 146 24 159 1.12e-45 166
Msa0185460 AT1G33060.2 55.797 138 52 3 16 146 24 159 1.15e-45 166
Msa0185460 AT4G35580.1 55.072 138 53 3 16 146 9 144 4.50e-45 162
Msa0185460 AT4G35580.2 55.072 138 53 3 16 146 9 144 5.98e-45 162
Msa0185460 AT4G35580.3 55.072 138 53 3 16 146 9 144 6.02e-45 162
Msa0185460 AT4G17980.1 53.077 130 59 1 16 143 6 135 6.62e-45 155
Msa0185460 AT4G17980.2 53.077 130 59 1 16 143 6 135 1.28e-44 155
Msa0185460 AT5G24590.2 38.961 231 117 7 16 232 13 233 1.35e-44 159
Msa0185460 AT3G49530.2 45.238 168 87 3 16 181 13 177 4.03e-44 157
Msa0185460 AT2G33480.2 49.068 161 61 4 14 168 13 158 6.20e-44 153
Msa0185460 AT2G27300.1 48.252 143 67 3 19 156 17 157 6.80e-44 155
Msa0185460 AT2G33480.1 49.686 159 65 4 14 168 13 160 7.20e-44 153
Msa0185460 AT5G64060.1 42.262 168 89 4 16 180 6 168 7.57e-44 155
Msa0185460 AT2G17040.1 46.795 156 74 4 14 168 5 152 9.89e-44 153
Msa0185460 AT3G49530.1 53.488 129 57 2 16 142 13 140 1.50e-43 157
Msa0185460 AT2G02450.1 53.600 125 57 1 19 143 54 177 3.35e-43 154
Msa0185460 AT2G43000.1 37.768 233 133 4 19 245 21 247 4.14e-43 151
Msa0185460 AT2G02450.2 53.600 125 57 1 19 143 54 177 5.12e-43 154
Msa0185460 AT1G56010.1 50.314 159 63 4 65 216 2 151 5.51e-42 147
Msa0185460 AT3G10480.3 42.424 198 62 4 16 171 27 214 2.65e-41 152
Msa0185460 AT5G09330.5 45.860 157 77 4 16 169 6 157 7.26e-41 150
Msa0185460 AT5G09330.2 45.860 157 77 4 16 169 6 157 7.26e-41 150
Msa0185460 AT5G09330.4 45.860 157 77 4 16 169 6 157 7.26e-41 150
Msa0185460 AT5G09330.3 45.860 157 77 4 16 169 6 157 7.26e-41 150
Msa0185460 AT5G09330.1 45.860 157 77 4 16 169 6 157 7.26e-41 150
Msa0185460 AT1G32510.1 41.053 190 98 4 16 195 6 191 1.46e-40 144
Msa0185460 AT1G34180.3 45.806 155 74 5 19 169 19 167 1.83e-40 148
Msa0185460 AT1G34190.1 45.806 155 74 5 19 169 19 167 2.83e-40 150
Msa0185460 AT1G52880.1 46.541 159 77 3 20 170 21 179 4.04e-40 144
Msa0185460 AT1G34180.1 45.806 155 74 5 19 169 19 167 7.19e-40 149
Msa0185460 AT3G12910.1 51.471 136 61 4 11 143 17 150 2.60e-39 142
Msa0185460 AT3G12977.2 46.980 149 72 4 65 209 14 159 4.26e-39 139
Msa0185460 AT1G34180.4 42.515 167 74 5 19 169 19 179 1.39e-38 144
Msa0185460 AT1G34180.2 42.515 167 74 5 19 169 19 179 4.79e-38 144
Msa0185460 AT1G32870.3 47.059 170 82 5 3 169 33 197 6.53e-38 143
Msa0185460 AT1G32870.2 48.408 157 73 5 16 169 10 161 1.30e-37 142
Msa0185460 AT1G32870.1 48.408 157 73 5 16 169 10 161 1.30e-37 142
Msa0185460 AT5G22290.1 42.657 143 74 3 19 155 24 164 2.04e-37 138
Msa0185460 AT3G44290.2 43.056 144 75 3 19 157 17 158 5.71e-37 134
Msa0185460 AT3G44290.1 43.056 144 75 3 19 157 17 158 2.19e-36 135
Msa0185460 AT5G04395.1 44.366 142 65 2 16 143 28 169 1.22e-34 126
Msa0185460 AT4G10350.2 53.509 114 46 3 61 171 7 116 1.81e-34 129
Msa0185460 AT4G28530.2 46.094 128 53 1 16 127 10 137 3.78e-30 117
Msa0185460 AT2G33480.3 53.000 100 43 2 69 168 8 103 1.29e-27 108
Msa0185460 AT1G02230.1 38.542 192 95 9 17 203 4 177 1.95e-27 111
Msa0185460 AT4G01550.1 40.000 155 82 6 18 168 6 153 3.55e-27 112
Msa0185460 AT3G44350.2 33.540 161 100 4 15 170 4 162 5.15e-26 105
Msa0185460 AT5G22380.1 33.750 160 97 5 15 167 4 161 2.28e-25 103
Msa0185460 AT3G44350.1 37.423 163 87 6 15 168 4 160 2.33e-25 100
Msa0185460 AT1G02250.1 40.458 131 70 4 17 142 4 131 3.42e-24 102
Msa0185460 AT3G04420.2 39.535 129 72 3 17 141 4 130 1.27e-23 99.8
Msa0185460 AT4G01520.1 38.608 158 85 7 17 169 5 155 1.54e-23 99.8
Msa0185460 AT3G04420.1 39.535 129 72 3 17 141 4 130 5.35e-23 99.0
Msa0185460 AT4G01540.4 39.355 155 82 7 19 168 7 154 1.17e-22 98.6
Msa0185460 AT4G01540.3 39.103 156 83 7 19 169 7 155 1.22e-22 99.0
Msa0185460 AT5G64530.2 36.154 130 71 2 14 143 1 118 1.43e-22 93.2
Msa0185460 AT4G01540.1 39.355 155 82 7 19 168 7 154 1.79e-22 99.0
Msa0185460 AT4G01540.2 39.474 152 80 7 19 165 7 151 1.81e-22 98.2
Msa0185460 AT5G64530.1 36.154 130 71 2 14 143 1 118 2.91e-22 93.2
Msa0185460 AT1G01010.1 32.941 170 88 6 18 167 5 168 2.83e-21 95.1
Msa0185460 AT3G10490.4 58.824 85 28 3 89 171 2 81 1.10e-20 92.4
Msa0185460 AT3G10490.3 58.824 85 28 3 89 171 2 81 1.10e-20 92.4
Msa0185460 AT5G50820.1 34.731 167 87 7 14 170 15 169 3.99e-20 87.4
Msa0185460 AT1G02220.1 36.364 132 75 4 14 141 1 127 5.50e-20 90.9
Msa0185460 AT2G43000.2 40.496 121 69 2 78 198 2 119 8.57e-19 84.0
Msa0185460 AT2G18060.2 47.619 84 38 3 94 177 2 79 7.71e-18 83.2
Msa0185460 AT5G14000.2 34.694 147 87 4 1 145 3 142 1.44e-17 79.3
Msa0185460 AT5G14000.1 31.073 177 108 5 1 175 3 167 3.06e-17 79.7
Msa0185460 AT5G22290.2 45.455 66 29 2 95 155 2 65 5.44e-15 74.3
Msa0185460 AT1G28470.1 34.682 173 84 9 16 170 77 238 8.46e-14 72.0
Msa0185460 AT3G56530.1 28.846 156 100 5 16 167 52 200 9.04e-13 68.9
Msa0185460 AT3G04430.1 32.576 132 77 3 22 142 6 136 1.49e-12 66.2
Msa0185460 AT4G29230.3 32.961 179 83 10 14 166 46 213 3.31e-12 67.8
Msa0185460 AT4G29230.1 32.597 181 85 10 14 168 46 215 3.40e-12 68.2
Msa0185460 AT4G29230.2 32.597 181 85 10 14 168 45 214 3.48e-12 68.2
Msa0185460 AT4G28500.1 32.948 173 88 8 16 170 59 221 4.30e-12 66.6
Msa0185460 AT3G55210.1 30.556 144 82 5 16 144 11 151 8.22e-12 65.5
Msa0185460 AT1G25580.1 30.732 205 106 11 16 204 58 242 1.99e-11 65.5

Find 85 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAGCAATGGTTACATTTA+TGG 0.087192 1_4:+75682709 Msa0185460:CDS
TCAAGGGAGTGTTTGGAATT+TGG 0.160932 1_4:-75682642 None:intergenic
CTCAATAGGTGATGATTTAT+TGG 0.165403 1_4:+75682408 Msa0185460:CDS
AATGTGCTTCTTTGCATTAA+TGG 0.210014 1_4:-75682592 None:intergenic
TGAGGGTTAATTATATATTA+TGG 0.215639 1_4:-75681023 None:intergenic
TTATATATATGTGAGAAATT+TGG 0.224266 1_4:-75680987 None:intergenic
AGAAATTTCGAAGAAATTAA+AGG 0.232856 1_4:-75680924 None:intergenic
CATTAATGGACCATTGAAAT+TGG 0.275416 1_4:-75682578 None:intergenic
GTAATGATTTCATCATCATT+AGG 0.301951 1_4:-75681167 None:intergenic
TTCTCATTCAAGGGAGTGTT+TGG 0.308314 1_4:-75682649 None:intergenic
AAAAGAAATGTGAAGAATAT+TGG 0.322654 1_4:-75680886 None:intergenic
TGAGTTCACCCTTAAAAGAT+TGG 0.333752 1_4:-75682389 None:intergenic
TCAATGGTATTGTTGCTAAA+AGG 0.335190 1_4:-75682463 None:intergenic
AAAACTCTTGTGTTCTATAA+AGG 0.349650 1_4:+75681627 Msa0185460:CDS
TTTCAAAGCAAGAAATTAGA+AGG 0.355070 1_4:+75682845 Msa0185460:CDS
GAACCTCTTGATTTGCCTGC+TGG 0.358232 1_4:+75681131 Msa0185460:CDS
TATAGTATAATAATATAATA+TGG 0.359598 1_4:-75681055 None:intergenic
ACTAATAGAGCAACTGAATC+AGG 0.363531 1_4:+75681534 Msa0185460:CDS
TAGCAACTTGCAACCTTCCT+AGG 0.364382 1_4:+75681712 Msa0185460:CDS
GAGCAACTGAATCAGGCTAT+TGG 0.368357 1_4:+75681541 Msa0185460:CDS
ATTCTCTACCAACAATTCTA+TGG 0.370549 1_4:+75682762 Msa0185460:CDS
CTTGAGGAACCTTCTTCAAT+TGG 0.371024 1_4:+75682889 Msa0185460:CDS
ATATATAATTGCAGGATGAT+TGG 0.372396 1_4:+75682308 Msa0185460:intron
TAATGATTTCATCATCATTA+GGG 0.381801 1_4:-75681166 None:intergenic
TTCTTCACTTCCACCTCTTG+TGG 0.398001 1_4:+75682435 Msa0185460:CDS
CAATGGTTACATTTATGGAT+TGG 0.400827 1_4:+75682714 Msa0185460:CDS
GGTCATGCATGAATTTAGAT+TGG 0.403946 1_4:+75681680 Msa0185460:CDS
CTATTAGTTCTTGTTCCAGT+TGG 0.407304 1_4:-75681519 None:intergenic
CTAAGATGGGAGAGAAAGAT+TGG 0.407819 1_4:+75681466 Msa0185460:CDS
CCCTCTCAAATCTTGAATCA+TGG 0.416301 1_4:+75682914 Msa0185460:CDS
TGATAACATGTTCTCATTCA+AGG 0.422659 1_4:-75682659 None:intergenic
GGAATTTGGATTTGAGTTTG+AGG 0.428910 1_4:-75682628 None:intergenic
TCAGGCTATTGGAAAGCAAC+TGG 0.434898 1_4:+75681552 Msa0185460:CDS
AAATTCATGCATGACCCAAT+TGG 0.452348 1_4:-75681673 None:intergenic
TTTGAATAGGTGTGAGCCTT+GGG 0.455631 1_4:+75681253 Msa0185460:CDS
AATTATTCATACATGAATCA+AGG 0.456946 1_4:+75682682 Msa0185460:CDS
AATGCTCACCATAGAATTGT+TGG 0.464393 1_4:-75682770 None:intergenic
TTTGAAGTCATGATCATCAA+TGG 0.465809 1_4:-75682479 None:intergenic
TTGGTGAAGCTGATTTGAAT+AGG 0.466419 1_4:+75681240 Msa0185460:CDS
ATGCATGAATTTAGATTGGA+TGG 0.466731 1_4:+75681684 Msa0185460:CDS
TATATAATTGCAGGATGATT+GGG 0.467236 1_4:+75682309 Msa0185460:intron
CAAGAGGAGAGAAAACCAAT+TGG 0.473553 1_4:+75681658 Msa0185460:CDS
CCATCACCTTCATCATCAAA+TGG 0.475218 1_4:+75682511 Msa0185460:CDS
TCATTGTTCATTAAGTAGCT+TGG 0.477838 1_4:-75682544 None:intergenic
CAATATCCATTTGATGATGA+AGG 0.479530 1_4:-75682517 None:intergenic
CCTCTCAAATCTTGAATCAT+GGG 0.480354 1_4:+75682915 Msa0185460:CDS
GATAACATGTTCTCATTCAA+GGG 0.484796 1_4:-75682658 None:intergenic
ATGAGAATCTTATATGAAAG+AGG 0.487323 1_4:-75680950 None:intergenic
ATTTGAATAGGTGTGAGCCT+TGG 0.489701 1_4:+75681252 Msa0185460:CDS
GGGAAAAGTAACCAACTTGT+TGG 0.500121 1_4:+75681597 Msa0185460:CDS
GAGAGGGGACCAATTGAAGA+AGG 0.501748 1_4:-75682898 None:intergenic
ACTAATCTCACCAATTTCAA+TGG 0.503686 1_4:+75682568 Msa0185460:CDS
CCATGATTCAAGATTTGAGA+GGG 0.508069 1_4:-75682914 None:intergenic
AGAGATAGGAAATATCCAAC+TGG 0.508548 1_4:+75681504 Msa0185460:CDS
AACAATAGGTTCTTCCATGA+TGG 0.509865 1_4:-75681093 None:intergenic
GGATGATTGGGTTGTGTCAA+AGG 0.512395 1_4:+75682321 Msa0185460:intron
GTTAATTATATATTATGGCT+AGG 0.517839 1_4:-75681018 None:intergenic
GTGAAGAATATTGGAAGGGA+AGG 0.519956 1_4:-75680877 None:intergenic
AGCAACTTGCAACCTTCCTA+GGG 0.526370 1_4:+75681713 Msa0185460:CDS
AAGAGGAGAGAAAACCAATT+GGG 0.538998 1_4:+75681659 Msa0185460:CDS
CAAATCTTGAATCATGGGAA+TGG 0.541002 1_4:+75682920 Msa0185460:CDS
GAGGGTACCTTTGCATCCCT+AGG 0.549703 1_4:-75681729 None:intergenic
GAAATGTGAAGAATATTGGA+AGG 0.552552 1_4:-75680882 None:intergenic
TTTGTAGTGAAAGCTAAGAT+GGG 0.554108 1_4:+75681453 Msa0185460:intron
GGAAAATAAAGAGTGCAAGA+TGG 0.554428 1_4:+75682735 Msa0185460:CDS
GTACCTTTGCATCCCTAGGA+AGG 0.556043 1_4:-75681725 None:intergenic
CCATTTGATGATGAAGGTGA+TGG 0.556150 1_4:-75682511 None:intergenic
ATTATTCATACATGAATCAA+GGG 0.558255 1_4:+75682683 Msa0185460:CDS
CCCATGATTCAAGATTTGAG+AGG 0.558765 1_4:-75682915 None:intergenic
AAAGATAAAGAGATCTACAA+AGG 0.563281 1_4:+75681576 Msa0185460:CDS
AAGATAAAGAGATCTACAAA+GGG 0.564009 1_4:+75681577 Msa0185460:CDS
GGGTGAAATCTGAAACCAGC+AGG 0.566266 1_4:-75681146 None:intergenic
ATTGATGATCATGACTTCAA+AGG 0.574039 1_4:+75682481 Msa0185460:CDS
CAACCTTCCTAGGGATGCAA+AGG 0.591292 1_4:+75681722 Msa0185460:CDS
TACTTACTTGGTAAATCCCA+AGG 0.598796 1_4:-75681269 None:intergenic
AACATTGTATGAAGAACTTG+AGG 0.604421 1_4:+75682873 Msa0185460:CDS
AAAGGAGGATCCACAAGAGG+TGG 0.605804 1_4:-75682445 None:intergenic
AATCAAGGGAATAATAGCAA+TGG 0.606407 1_4:+75682697 Msa0185460:CDS
ATGGTATTGTTGCTAAAAGG+AGG 0.620808 1_4:-75682460 None:intergenic
AAATGTGAAGAATATTGGAA+GGG 0.629624 1_4:-75680881 None:intergenic
AAACCAGCAGGCAAATCAAG+AGG 0.637474 1_4:-75681134 None:intergenic
CATGATTCAAGATTTGAGAG+GGG 0.641900 1_4:-75682913 None:intergenic
AATTATATATTATGGCTAGG+TGG 0.658218 1_4:-75681015 None:intergenic
CTAAAAGGAGGATCCACAAG+AGG 0.668774 1_4:-75682448 None:intergenic
TATAAAGGTAGAGCTCCAAG+AGG 0.710079 1_4:+75681642 Msa0185460:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATATATGTGAGAAATT+TGG - chr1_4:75680990-75681009 None:intergenic 15.0%
!! AAAAGAAAATAATACTTACT+TGG - chr1_4:75681284-75681303 None:intergenic 15.0%
!! TCAATATAAAAATTAATGCA+AGG + chr1_4:75681834-75681853 Msa0185460:intron 15.0%
!!! ATAAAAAGAACTCATAATTT+TGG - chr1_4:75682096-75682115 None:intergenic 15.0%
!! TTATATATATGTGAGAAATT+TGG - chr1_4:75680990-75681009 None:intergenic 15.0%
!! AAAAGAAAATAATACTTACT+TGG - chr1_4:75681284-75681303 None:intergenic 15.0%
!! TCAATATAAAAATTAATGCA+AGG + chr1_4:75681834-75681853 Msa0185460:intron 15.0%
!!! ATAAAAAGAACTCATAATTT+TGG - chr1_4:75682096-75682115 None:intergenic 15.0%
!! AAAAGAAATGTGAAGAATAT+TGG - chr1_4:75680889-75680908 None:intergenic 20.0%
!! AGAAATTTCGAAGAAATTAA+AGG - chr1_4:75680927-75680946 None:intergenic 20.0%
!! GTTAATTATATATTATGGCT+AGG - chr1_4:75681021-75681040 None:intergenic 20.0%
!! TGAGGGTTAATTATATATTA+TGG - chr1_4:75681026-75681045 None:intergenic 20.0%
!!! TAATATGGTTTTGATTTTGA+GGG - chr1_4:75681043-75681062 None:intergenic 20.0%
!!! ATAATATGGTTTTGATTTTG+AGG - chr1_4:75681044-75681063 None:intergenic 20.0%
!! TAATGATTTCATCATCATTA+GGG - chr1_4:75681169-75681188 None:intergenic 20.0%
!!! TACTTTTTATTTGCTTAAGA+AGG + chr1_4:75681187-75681206 Msa0185460:CDS 20.0%
!! GAAGAAAAAGAAAATTAAGA+GGG - chr1_4:75681750-75681769 None:intergenic 20.0%
!! AGAAGAAAAAGAAAATTAAG+AGG - chr1_4:75681751-75681770 None:intergenic 20.0%
!!! TTTTCTAAATCAAGAGAAAA+TGG - chr1_4:75681781-75681800 None:intergenic 20.0%
!!! ATTTTCTCTTGATTTAGAAA+AGG + chr1_4:75681780-75681799 Msa0185460:intron 20.0%
!!! ATTTTGTCGTAATTCTTAAT+TGG - chr1_4:75682038-75682057 None:intergenic 20.0%
!! TTGATATGATATATAATTGC+AGG + chr1_4:75682300-75682319 Msa0185460:intron 20.0%
!!! TTCATTTTCCAATCTTTTAA+GGG + chr1_4:75682381-75682400 Msa0185460:CDS 20.0%
!! AATTATTCATACATGAATCA+AGG + chr1_4:75682682-75682701 Msa0185460:CDS 20.0%
!! ATTATTCATACATGAATCAA+GGG + chr1_4:75682683-75682702 Msa0185460:CDS 20.0%
!! AAAAGAAATGTGAAGAATAT+TGG - chr1_4:75680889-75680908 None:intergenic 20.0%
!! AGAAATTTCGAAGAAATTAA+AGG - chr1_4:75680927-75680946 None:intergenic 20.0%
!! GTTAATTATATATTATGGCT+AGG - chr1_4:75681021-75681040 None:intergenic 20.0%
!! TGAGGGTTAATTATATATTA+TGG - chr1_4:75681026-75681045 None:intergenic 20.0%
!!! TAATATGGTTTTGATTTTGA+GGG - chr1_4:75681043-75681062 None:intergenic 20.0%
!!! ATAATATGGTTTTGATTTTG+AGG - chr1_4:75681044-75681063 None:intergenic 20.0%
!! TAATGATTTCATCATCATTA+GGG - chr1_4:75681169-75681188 None:intergenic 20.0%
!!! TACTTTTTATTTGCTTAAGA+AGG + chr1_4:75681187-75681206 Msa0185460:CDS 20.0%
!! GAAGAAAAAGAAAATTAAGA+GGG - chr1_4:75681750-75681769 None:intergenic 20.0%
!! AGAAGAAAAAGAAAATTAAG+AGG - chr1_4:75681751-75681770 None:intergenic 20.0%
!!! TTTTCTAAATCAAGAGAAAA+TGG - chr1_4:75681781-75681800 None:intergenic 20.0%
!!! ATTTTCTCTTGATTTAGAAA+AGG + chr1_4:75681780-75681799 Msa0185460:intron 20.0%
!!! ATTTTGTCGTAATTCTTAAT+TGG - chr1_4:75682038-75682057 None:intergenic 20.0%
!! TTGATATGATATATAATTGC+AGG + chr1_4:75682300-75682319 Msa0185460:intron 20.0%
!!! TTCATTTTCCAATCTTTTAA+GGG + chr1_4:75682381-75682400 Msa0185460:CDS 20.0%
!! AATTATTCATACATGAATCA+AGG + chr1_4:75682682-75682701 Msa0185460:CDS 20.0%
!! ATTATTCATACATGAATCAA+GGG + chr1_4:75682683-75682702 Msa0185460:CDS 20.0%
! AAATGTGAAGAATATTGGAA+GGG - chr1_4:75680884-75680903 None:intergenic 25.0%
! ATGAGAATCTTATATGAAAG+AGG - chr1_4:75680953-75680972 None:intergenic 25.0%
! AATTATATATTATGGCTAGG+TGG - chr1_4:75681018-75681037 None:intergenic 25.0%
!!! AGTTTTTTCATTATCCATCA+TGG + chr1_4:75681079-75681098 Msa0185460:exon 25.0%
! GTAATGATTTCATCATCATT+AGG - chr1_4:75681170-75681189 None:intergenic 25.0%
!!! AATTTTAGTGCAATTGCAAT+TGG + chr1_4:75681221-75681240 Msa0185460:CDS 25.0%
! CAATCATATATAACTAACTC+CGG - chr1_4:75681392-75681411 None:intergenic 25.0%
!! ATTTCTTTTGTCAAAGAGAT+AGG + chr1_4:75681490-75681509 Msa0185460:CDS 25.0%
! AAAGATAAAGAGATCTACAA+AGG + chr1_4:75681576-75681595 Msa0185460:CDS 25.0%
! AAGATAAAGAGATCTACAAA+GGG + chr1_4:75681577-75681596 Msa0185460:CDS 25.0%
! AAAACTCTTGTGTTCTATAA+AGG + chr1_4:75681627-75681646 Msa0185460:CDS 25.0%
!!! ATTAATGCAAGGTTTTATTG+TGG + chr1_4:75681845-75681864 Msa0185460:intron 25.0%
!! TCTAATTCATCTAATTTGCA+AGG - chr1_4:75681901-75681920 None:intergenic 25.0%
!!! AAAGAACTCATAATTTTGGT+CGG - chr1_4:75682092-75682111 None:intergenic 25.0%
!! AGAAAGAAAGAAAAAGTGTA+AGG - chr1_4:75682257-75682276 None:intergenic 25.0%
! TTCTTTCTTTCTTTCTTTCT+TGG + chr1_4:75682265-75682284 Msa0185460:intron 25.0%
! ATATATAATTGCAGGATGAT+TGG + chr1_4:75682308-75682327 Msa0185460:intron 25.0%
! TATATAATTGCAGGATGATT+GGG + chr1_4:75682309-75682328 Msa0185460:intron 25.0%
!! CTTCATTTTCCAATCTTTTA+AGG + chr1_4:75682380-75682399 Msa0185460:CDS 25.0%
! AATAGCAATGGTTACATTTA+TGG + chr1_4:75682709-75682728 Msa0185460:CDS 25.0%
! TTTCAAAGCAAGAAATTAGA+AGG + chr1_4:75682845-75682864 Msa0185460:CDS 25.0%
! AAATGTGAAGAATATTGGAA+GGG - chr1_4:75680884-75680903 None:intergenic 25.0%
! ATGAGAATCTTATATGAAAG+AGG - chr1_4:75680953-75680972 None:intergenic 25.0%
! AATTATATATTATGGCTAGG+TGG - chr1_4:75681018-75681037 None:intergenic 25.0%
!!! AGTTTTTTCATTATCCATCA+TGG + chr1_4:75681079-75681098 Msa0185460:exon 25.0%
! GTAATGATTTCATCATCATT+AGG - chr1_4:75681170-75681189 None:intergenic 25.0%
!!! AATTTTAGTGCAATTGCAAT+TGG + chr1_4:75681221-75681240 Msa0185460:CDS 25.0%
! CAATCATATATAACTAACTC+CGG - chr1_4:75681392-75681411 None:intergenic 25.0%
!! ATTTCTTTTGTCAAAGAGAT+AGG + chr1_4:75681490-75681509 Msa0185460:CDS 25.0%
! AAAGATAAAGAGATCTACAA+AGG + chr1_4:75681576-75681595 Msa0185460:CDS 25.0%
! AAGATAAAGAGATCTACAAA+GGG + chr1_4:75681577-75681596 Msa0185460:CDS 25.0%
! AAAACTCTTGTGTTCTATAA+AGG + chr1_4:75681627-75681646 Msa0185460:CDS 25.0%
!!! ATTAATGCAAGGTTTTATTG+TGG + chr1_4:75681845-75681864 Msa0185460:intron 25.0%
!! TCTAATTCATCTAATTTGCA+AGG - chr1_4:75681901-75681920 None:intergenic 25.0%
!!! AAAGAACTCATAATTTTGGT+CGG - chr1_4:75682092-75682111 None:intergenic 25.0%
!! AGAAAGAAAGAAAAAGTGTA+AGG - chr1_4:75682257-75682276 None:intergenic 25.0%
! TTCTTTCTTTCTTTCTTTCT+TGG + chr1_4:75682265-75682284 Msa0185460:intron 25.0%
! ATATATAATTGCAGGATGAT+TGG + chr1_4:75682308-75682327 Msa0185460:intron 25.0%
! TATATAATTGCAGGATGATT+GGG + chr1_4:75682309-75682328 Msa0185460:intron 25.0%
!! CTTCATTTTCCAATCTTTTA+AGG + chr1_4:75682380-75682399 Msa0185460:CDS 25.0%
! AATAGCAATGGTTACATTTA+TGG + chr1_4:75682709-75682728 Msa0185460:CDS 25.0%
! TTTCAAAGCAAGAAATTAGA+AGG + chr1_4:75682845-75682864 Msa0185460:CDS 25.0%
GAAATGTGAAGAATATTGGA+AGG - chr1_4:75680885-75680904 None:intergenic 30.0%
!! TCACTTTTGTTCACAACAAT+AGG - chr1_4:75681110-75681129 None:intergenic 30.0%
! TTTTGTAGTGAAAGCTAAGA+TGG + chr1_4:75681452-75681471 Msa0185460:intron 30.0%
TTTGTAGTGAAAGCTAAGAT+GGG + chr1_4:75681453-75681472 Msa0185460:intron 30.0%
! TTTTCTTCATACCAACAAGT+TGG - chr1_4:75681611-75681630 None:intergenic 30.0%
ATGCATGAATTTAGATTGGA+TGG + chr1_4:75681684-75681703 Msa0185460:CDS 30.0%
GGTTTCAATTCAAGTACAAT+GGG - chr1_4:75681944-75681963 None:intergenic 30.0%
ATATGAGTTTCTTTCTCATG+TGG + chr1_4:75682172-75682191 Msa0185460:intron 30.0%
TGAACTCTATAGAAAGCAAA+AGG - chr1_4:75682218-75682237 None:intergenic 30.0%
CTCAATAGGTGATGATTTAT+TGG + chr1_4:75682408-75682427 Msa0185460:CDS 30.0%
TCAATGGTATTGTTGCTAAA+AGG - chr1_4:75682466-75682485 None:intergenic 30.0%
! TTTGAAGTCATGATCATCAA+TGG - chr1_4:75682482-75682501 None:intergenic 30.0%
! ATTGATGATCATGACTTCAA+AGG + chr1_4:75682481-75682500 Msa0185460:CDS 30.0%
!! CAATATCCATTTGATGATGA+AGG - chr1_4:75682520-75682539 None:intergenic 30.0%
TCATTGTTCATTAAGTAGCT+TGG - chr1_4:75682547-75682566 None:intergenic 30.0%
ACTAATCTCACCAATTTCAA+TGG + chr1_4:75682568-75682587 Msa0185460:CDS 30.0%
! CATTAATGGACCATTGAAAT+TGG - chr1_4:75682581-75682600 None:intergenic 30.0%
AATGTGCTTCTTTGCATTAA+TGG - chr1_4:75682595-75682614 None:intergenic 30.0%
GATAACATGTTCTCATTCAA+GGG - chr1_4:75682661-75682680 None:intergenic 30.0%
TGATAACATGTTCTCATTCA+AGG - chr1_4:75682662-75682681 None:intergenic 30.0%
AATCAAGGGAATAATAGCAA+TGG + chr1_4:75682697-75682716 Msa0185460:CDS 30.0%
CAATGGTTACATTTATGGAT+TGG + chr1_4:75682714-75682733 Msa0185460:CDS 30.0%
ATTCTCTACCAACAATTCTA+TGG + chr1_4:75682762-75682781 Msa0185460:CDS 30.0%
AACATTGTATGAAGAACTTG+AGG + chr1_4:75682873-75682892 Msa0185460:CDS 30.0%
GAAATGTGAAGAATATTGGA+AGG - chr1_4:75680885-75680904 None:intergenic 30.0%
!! TCACTTTTGTTCACAACAAT+AGG - chr1_4:75681110-75681129 None:intergenic 30.0%
! TTTTGTAGTGAAAGCTAAGA+TGG + chr1_4:75681452-75681471 Msa0185460:intron 30.0%
TTTGTAGTGAAAGCTAAGAT+GGG + chr1_4:75681453-75681472 Msa0185460:intron 30.0%
! TTTTCTTCATACCAACAAGT+TGG - chr1_4:75681611-75681630 None:intergenic 30.0%
ATGCATGAATTTAGATTGGA+TGG + chr1_4:75681684-75681703 Msa0185460:CDS 30.0%
GGTTTCAATTCAAGTACAAT+GGG - chr1_4:75681944-75681963 None:intergenic 30.0%
ATATGAGTTTCTTTCTCATG+TGG + chr1_4:75682172-75682191 Msa0185460:intron 30.0%
TGAACTCTATAGAAAGCAAA+AGG - chr1_4:75682218-75682237 None:intergenic 30.0%
CTCAATAGGTGATGATTTAT+TGG + chr1_4:75682408-75682427 Msa0185460:CDS 30.0%
TCAATGGTATTGTTGCTAAA+AGG - chr1_4:75682466-75682485 None:intergenic 30.0%
! TTTGAAGTCATGATCATCAA+TGG - chr1_4:75682482-75682501 None:intergenic 30.0%
! ATTGATGATCATGACTTCAA+AGG + chr1_4:75682481-75682500 Msa0185460:CDS 30.0%
!! CAATATCCATTTGATGATGA+AGG - chr1_4:75682520-75682539 None:intergenic 30.0%
TCATTGTTCATTAAGTAGCT+TGG - chr1_4:75682547-75682566 None:intergenic 30.0%
ACTAATCTCACCAATTTCAA+TGG + chr1_4:75682568-75682587 Msa0185460:CDS 30.0%
! CATTAATGGACCATTGAAAT+TGG - chr1_4:75682581-75682600 None:intergenic 30.0%
AATGTGCTTCTTTGCATTAA+TGG - chr1_4:75682595-75682614 None:intergenic 30.0%
GATAACATGTTCTCATTCAA+GGG - chr1_4:75682661-75682680 None:intergenic 30.0%
TGATAACATGTTCTCATTCA+AGG - chr1_4:75682662-75682681 None:intergenic 30.0%
AATCAAGGGAATAATAGCAA+TGG + chr1_4:75682697-75682716 Msa0185460:CDS 30.0%
CAATGGTTACATTTATGGAT+TGG + chr1_4:75682714-75682733 Msa0185460:CDS 30.0%
ATTCTCTACCAACAATTCTA+TGG + chr1_4:75682762-75682781 Msa0185460:CDS 30.0%
AACATTGTATGAAGAACTTG+AGG + chr1_4:75682873-75682892 Msa0185460:CDS 30.0%
AACAATAGGTTCTTCCATGA+TGG - chr1_4:75681096-75681115 None:intergenic 35.0%
!! TTGGTGAAGCTGATTTGAAT+AGG + chr1_4:75681240-75681259 Msa0185460:CDS 35.0%
TACTTACTTGGTAAATCCCA+AGG - chr1_4:75681272-75681291 None:intergenic 35.0%
ATCTTAACTCTCCGATTATC+CGG + chr1_4:75681348-75681367 Msa0185460:intron 35.0%
AGAGATAGGAAATATCCAAC+TGG + chr1_4:75681504-75681523 Msa0185460:CDS 35.0%
! CTATTAGTTCTTGTTCCAGT+TGG - chr1_4:75681522-75681541 None:intergenic 35.0%
ACTAATAGAGCAACTGAATC+AGG + chr1_4:75681534-75681553 Msa0185460:CDS 35.0%
AAGAGGAGAGAAAACCAATT+GGG + chr1_4:75681659-75681678 Msa0185460:CDS 35.0%
AAATTCATGCATGACCCAAT+TGG - chr1_4:75681676-75681695 None:intergenic 35.0%
GGTCATGCATGAATTTAGAT+TGG + chr1_4:75681680-75681699 Msa0185460:CDS 35.0%
CGGTTTCAATTCAAGTACAA+TGG - chr1_4:75681945-75681964 None:intergenic 35.0%
AATTACAGTTGCAGTCGAAA+TGG - chr1_4:75682063-75682082 None:intergenic 35.0%
! AAAGCAAAAGGTGTGATGAA+GGG - chr1_4:75682206-75682225 None:intergenic 35.0%
TGAGTTCACCCTTAAAAGAT+TGG - chr1_4:75682392-75682411 None:intergenic 35.0%
!! CTTTTAAGGGTGAACTCAAT+AGG + chr1_4:75682394-75682413 Msa0185460:CDS 35.0%
ATGGTATTGTTGCTAAAAGG+AGG - chr1_4:75682463-75682482 None:intergenic 35.0%
! GGAATTTGGATTTGAGTTTG+AGG - chr1_4:75682631-75682650 None:intergenic 35.0%
! GGAAAATAAAGAGTGCAAGA+TGG + chr1_4:75682735-75682754 Msa0185460:CDS 35.0%
AATGCTCACCATAGAATTGT+TGG - chr1_4:75682773-75682792 None:intergenic 35.0%
CATGATTCAAGATTTGAGAG+GGG - chr1_4:75682916-75682935 None:intergenic 35.0%
CCATGATTCAAGATTTGAGA+GGG - chr1_4:75682917-75682936 None:intergenic 35.0%
CCTCTCAAATCTTGAATCAT+GGG + chr1_4:75682915-75682934 Msa0185460:CDS 35.0%
CAAATCTTGAATCATGGGAA+TGG + chr1_4:75682920-75682939 Msa0185460:CDS 35.0%
AACAATAGGTTCTTCCATGA+TGG - chr1_4:75681096-75681115 None:intergenic 35.0%
!! TTGGTGAAGCTGATTTGAAT+AGG + chr1_4:75681240-75681259 Msa0185460:CDS 35.0%
TACTTACTTGGTAAATCCCA+AGG - chr1_4:75681272-75681291 None:intergenic 35.0%
ATCTTAACTCTCCGATTATC+CGG + chr1_4:75681348-75681367 Msa0185460:intron 35.0%
AGAGATAGGAAATATCCAAC+TGG + chr1_4:75681504-75681523 Msa0185460:CDS 35.0%
! CTATTAGTTCTTGTTCCAGT+TGG - chr1_4:75681522-75681541 None:intergenic 35.0%
ACTAATAGAGCAACTGAATC+AGG + chr1_4:75681534-75681553 Msa0185460:CDS 35.0%
AAGAGGAGAGAAAACCAATT+GGG + chr1_4:75681659-75681678 Msa0185460:CDS 35.0%
AAATTCATGCATGACCCAAT+TGG - chr1_4:75681676-75681695 None:intergenic 35.0%
GGTCATGCATGAATTTAGAT+TGG + chr1_4:75681680-75681699 Msa0185460:CDS 35.0%
CGGTTTCAATTCAAGTACAA+TGG - chr1_4:75681945-75681964 None:intergenic 35.0%
AATTACAGTTGCAGTCGAAA+TGG - chr1_4:75682063-75682082 None:intergenic 35.0%
! AAAGCAAAAGGTGTGATGAA+GGG - chr1_4:75682206-75682225 None:intergenic 35.0%
TGAGTTCACCCTTAAAAGAT+TGG - chr1_4:75682392-75682411 None:intergenic 35.0%
!! CTTTTAAGGGTGAACTCAAT+AGG + chr1_4:75682394-75682413 Msa0185460:CDS 35.0%
ATGGTATTGTTGCTAAAAGG+AGG - chr1_4:75682463-75682482 None:intergenic 35.0%
! GGAATTTGGATTTGAGTTTG+AGG - chr1_4:75682631-75682650 None:intergenic 35.0%
! GGAAAATAAAGAGTGCAAGA+TGG + chr1_4:75682735-75682754 Msa0185460:CDS 35.0%
AATGCTCACCATAGAATTGT+TGG - chr1_4:75682773-75682792 None:intergenic 35.0%
CATGATTCAAGATTTGAGAG+GGG - chr1_4:75682916-75682935 None:intergenic 35.0%
CCATGATTCAAGATTTGAGA+GGG - chr1_4:75682917-75682936 None:intergenic 35.0%
CCTCTCAAATCTTGAATCAT+GGG + chr1_4:75682915-75682934 Msa0185460:CDS 35.0%
CAAATCTTGAATCATGGGAA+TGG + chr1_4:75682920-75682939 Msa0185460:CDS 35.0%
GTGAAGAATATTGGAAGGGA+AGG - chr1_4:75680880-75680899 None:intergenic 40.0%
ATTTGAATAGGTGTGAGCCT+TGG + chr1_4:75681252-75681271 Msa0185460:CDS 40.0%
TTTGAATAGGTGTGAGCCTT+GGG + chr1_4:75681253-75681272 Msa0185460:CDS 40.0%
TCTCCGATTATCCGGATAAA+GGG + chr1_4:75681356-75681375 Msa0185460:intron 40.0%
GAACCCTTTATCCGGATAAT+CGG - chr1_4:75681362-75681381 None:intergenic 40.0%
ATTATCCGGATAAAGGGTTC+TGG + chr1_4:75681362-75681381 Msa0185460:intron 40.0%
GATTACCAGAACCCTTTATC+CGG - chr1_4:75681370-75681389 None:intergenic 40.0%
! GATAAAGGGTTCTGGTAATC+CGG + chr1_4:75681370-75681389 Msa0185460:intron 40.0%
CTAAGATGGGAGAGAAAGAT+TGG + chr1_4:75681466-75681485 Msa0185460:CDS 40.0%
GGGAAAAGTAACCAACTTGT+TGG + chr1_4:75681597-75681616 Msa0185460:CDS 40.0%
TATAAAGGTAGAGCTCCAAG+AGG + chr1_4:75681642-75681661 Msa0185460:CDS 40.0%
!!! CAATTGGTTTTCTCTCCTCT+TGG - chr1_4:75681660-75681679 None:intergenic 40.0%
CAAGAGGAGAGAAAACCAAT+TGG + chr1_4:75681658-75681677 Msa0185460:CDS 40.0%
GATGAAGCGAAAATTGCGAT+CGG - chr1_4:75681965-75681984 None:intergenic 40.0%
! GAAAGCAAAAGGTGTGATGA+AGG - chr1_4:75682207-75682226 None:intergenic 40.0%
!! CCATTTGATGATGAAGGTGA+TGG - chr1_4:75682514-75682533 None:intergenic 40.0%
CCATCACCTTCATCATCAAA+TGG + chr1_4:75682511-75682530 Msa0185460:CDS 40.0%
!! TCAAGGGAGTGTTTGGAATT+TGG - chr1_4:75682645-75682664 None:intergenic 40.0%
!! TTCTCATTCAAGGGAGTGTT+TGG - chr1_4:75682652-75682671 None:intergenic 40.0%
CTTGAGGAACCTTCTTCAAT+TGG + chr1_4:75682889-75682908 Msa0185460:CDS 40.0%
CCCTCTCAAATCTTGAATCA+TGG + chr1_4:75682914-75682933 Msa0185460:CDS 40.0%
CCCATGATTCAAGATTTGAG+AGG - chr1_4:75682918-75682937 None:intergenic 40.0%
GTGAAGAATATTGGAAGGGA+AGG - chr1_4:75680880-75680899 None:intergenic 40.0%
ATTTGAATAGGTGTGAGCCT+TGG + chr1_4:75681252-75681271 Msa0185460:CDS 40.0%
TTTGAATAGGTGTGAGCCTT+GGG + chr1_4:75681253-75681272 Msa0185460:CDS 40.0%
TCTCCGATTATCCGGATAAA+GGG + chr1_4:75681356-75681375 Msa0185460:intron 40.0%
GAACCCTTTATCCGGATAAT+CGG - chr1_4:75681362-75681381 None:intergenic 40.0%
ATTATCCGGATAAAGGGTTC+TGG + chr1_4:75681362-75681381 Msa0185460:intron 40.0%
GATTACCAGAACCCTTTATC+CGG - chr1_4:75681370-75681389 None:intergenic 40.0%
! GATAAAGGGTTCTGGTAATC+CGG + chr1_4:75681370-75681389 Msa0185460:intron 40.0%
CTAAGATGGGAGAGAAAGAT+TGG + chr1_4:75681466-75681485 Msa0185460:CDS 40.0%
GGGAAAAGTAACCAACTTGT+TGG + chr1_4:75681597-75681616 Msa0185460:CDS 40.0%
TATAAAGGTAGAGCTCCAAG+AGG + chr1_4:75681642-75681661 Msa0185460:CDS 40.0%
!!! CAATTGGTTTTCTCTCCTCT+TGG - chr1_4:75681660-75681679 None:intergenic 40.0%
CAAGAGGAGAGAAAACCAAT+TGG + chr1_4:75681658-75681677 Msa0185460:CDS 40.0%
GATGAAGCGAAAATTGCGAT+CGG - chr1_4:75681965-75681984 None:intergenic 40.0%
! GAAAGCAAAAGGTGTGATGA+AGG - chr1_4:75682207-75682226 None:intergenic 40.0%
!! CCATTTGATGATGAAGGTGA+TGG - chr1_4:75682514-75682533 None:intergenic 40.0%
CCATCACCTTCATCATCAAA+TGG + chr1_4:75682511-75682530 Msa0185460:CDS 40.0%
!! TCAAGGGAGTGTTTGGAATT+TGG - chr1_4:75682645-75682664 None:intergenic 40.0%
!! TTCTCATTCAAGGGAGTGTT+TGG - chr1_4:75682652-75682671 None:intergenic 40.0%
CTTGAGGAACCTTCTTCAAT+TGG + chr1_4:75682889-75682908 Msa0185460:CDS 40.0%
CCCTCTCAAATCTTGAATCA+TGG + chr1_4:75682914-75682933 Msa0185460:CDS 40.0%
CCCATGATTCAAGATTTGAG+AGG - chr1_4:75682918-75682937 None:intergenic 40.0%
AAACCAGCAGGCAAATCAAG+AGG - chr1_4:75681137-75681156 None:intergenic 45.0%
CTCTCCGATTATCCGGATAA+AGG + chr1_4:75681355-75681374 Msa0185460:intron 45.0%
GAGCAACTGAATCAGGCTAT+TGG + chr1_4:75681541-75681560 Msa0185460:CDS 45.0%
TCAGGCTATTGGAAAGCAAC+TGG + chr1_4:75681552-75681571 Msa0185460:CDS 45.0%
TAGCAACTTGCAACCTTCCT+AGG + chr1_4:75681712-75681731 Msa0185460:CDS 45.0%
AGCAACTTGCAACCTTCCTA+GGG + chr1_4:75681713-75681732 Msa0185460:CDS 45.0%
AAGGTGTGATGAAGGGAGAA+AGG - chr1_4:75682199-75682218 None:intergenic 45.0%
! GGATGATTGGGTTGTGTCAA+AGG + chr1_4:75682321-75682340 Msa0185460:intron 45.0%
TTCTTCACTTCCACCTCTTG+TGG + chr1_4:75682435-75682454 Msa0185460:CDS 45.0%
CTAAAAGGAGGATCCACAAG+AGG - chr1_4:75682451-75682470 None:intergenic 45.0%
AAACCAGCAGGCAAATCAAG+AGG - chr1_4:75681137-75681156 None:intergenic 45.0%
CTCTCCGATTATCCGGATAA+AGG + chr1_4:75681355-75681374 Msa0185460:intron 45.0%
GAGCAACTGAATCAGGCTAT+TGG + chr1_4:75681541-75681560 Msa0185460:CDS 45.0%
TCAGGCTATTGGAAAGCAAC+TGG + chr1_4:75681552-75681571 Msa0185460:CDS 45.0%
TAGCAACTTGCAACCTTCCT+AGG + chr1_4:75681712-75681731 Msa0185460:CDS 45.0%
AGCAACTTGCAACCTTCCTA+GGG + chr1_4:75681713-75681732 Msa0185460:CDS 45.0%
AAGGTGTGATGAAGGGAGAA+AGG - chr1_4:75682199-75682218 None:intergenic 45.0%
! GGATGATTGGGTTGTGTCAA+AGG + chr1_4:75682321-75682340 Msa0185460:intron 45.0%
TTCTTCACTTCCACCTCTTG+TGG + chr1_4:75682435-75682454 Msa0185460:CDS 45.0%
CTAAAAGGAGGATCCACAAG+AGG - chr1_4:75682451-75682470 None:intergenic 45.0%
!! TATAGTATAATAATATAATA+TGG - chr1_4:75681058-75681077 None:intergenic 5.0%
!! TATAGTATAATAATATAATA+TGG - chr1_4:75681058-75681077 None:intergenic 5.0%
!! GAACCTCTTGATTTGCCTGC+TGG + chr1_4:75681131-75681150 Msa0185460:CDS 50.0%
! GGGTGAAATCTGAAACCAGC+AGG - chr1_4:75681149-75681168 None:intergenic 50.0%
CAACCTTCCTAGGGATGCAA+AGG + chr1_4:75681722-75681741 Msa0185460:CDS 50.0%
GTACCTTTGCATCCCTAGGA+AGG - chr1_4:75681728-75681747 None:intergenic 50.0%
AAAGGAGGATCCACAAGAGG+TGG - chr1_4:75682448-75682467 None:intergenic 50.0%
GAGAGGGGACCAATTGAAGA+AGG - chr1_4:75682901-75682920 None:intergenic 50.0%
!! GAACCTCTTGATTTGCCTGC+TGG + chr1_4:75681131-75681150 Msa0185460:CDS 50.0%
! GGGTGAAATCTGAAACCAGC+AGG - chr1_4:75681149-75681168 None:intergenic 50.0%
CAACCTTCCTAGGGATGCAA+AGG + chr1_4:75681722-75681741 Msa0185460:CDS 50.0%
GTACCTTTGCATCCCTAGGA+AGG - chr1_4:75681728-75681747 None:intergenic 50.0%
AAAGGAGGATCCACAAGAGG+TGG - chr1_4:75682448-75682467 None:intergenic 50.0%
GAGAGGGGACCAATTGAAGA+AGG - chr1_4:75682901-75682920 None:intergenic 50.0%
!! GAGGGTACCTTTGCATCCCT+AGG - chr1_4:75681732-75681751 None:intergenic 55.0%
!! GAGGGTACCTTTGCATCCCT+AGG - chr1_4:75681732-75681751 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 75680877 75682957 75680877 ID=Msa0185460;Name=Msa0185460
chr1_4 mRNA 75680877 75682957 75680877 ID=Msa0185460-mRNA-1;Parent=Msa0185460;Name=Msa0185460-mRNA-1;_AED=0.01;_eAED=0.03;_QI=221|1|0.66|1|1|1|3|0|368
chr1_4 exon 75680877 75681284 75680877 ID=Msa0185460-mRNA-1:exon:25783;Parent=Msa0185460-mRNA-1
chr1_4 exon 75681460 75681743 75681460 ID=Msa0185460-mRNA-1:exon:25784;Parent=Msa0185460-mRNA-1
chr1_4 exon 75682322 75682957 75682322 ID=Msa0185460-mRNA-1:exon:25785;Parent=Msa0185460-mRNA-1
chr1_4 five_prime_UTR 75680877 75681097 75680877 ID=Msa0185460-mRNA-1:five_prime_utr;Parent=Msa0185460-mRNA-1
chr1_4 CDS 75681098 75681284 75681098 ID=Msa0185460-mRNA-1:cds;Parent=Msa0185460-mRNA-1
chr1_4 CDS 75681460 75681743 75681460 ID=Msa0185460-mRNA-1:cds;Parent=Msa0185460-mRNA-1
chr1_4 CDS 75682322 75682957 75682322 ID=Msa0185460-mRNA-1:cds;Parent=Msa0185460-mRNA-1
Gene Sequence

>Msa0185460

ATGGAAGAACCTATTGTTGTGAACAAAAGTGATGAACCTCTTGATTTGCCTGCTGGTTTCAGATTTCACCCTAATGATGATGAAATCATTACTTTTTATTTGCTTAAGAAGGTATTGAATAGTAATTTTAGTGCAATTGCAATTGGTGAAGCTGATTTGAATAGGTGTGAGCCTTGGGATTTACCAATGAAAGCTAAGATGGGAGAGAAAGATTGGTATTTCTTTTGTCAAAGAGATAGGAAATATCCAACTGGAACAAGAACTAATAGAGCAACTGAATCAGGCTATTGGAAAGCAACTGGAAAAGATAAAGAGATCTACAAAGGGAAAAGTAACCAACTTGTTGGTATGAAGAAAACTCTTGTGTTCTATAAAGGTAGAGCTCCAAGAGGAGAGAAAACCAATTGGGTCATGCATGAATTTAGATTGGATGGAACATTAGCAACTTGCAACCTTCCTAGGGATGCAAAGGATGATTGGGTTGTGTCAAAGGTTTTCATCAAGAACAACATTGAAGTTAAAAAAACTACTTCATTTTCCAATCTTTTAAGGGTGAACTCAATAGGTGATGATTTATTGGATTTTTCTTCACTTCCACCTCTTGTGGATCCTCCTTTTAGCAACAATACCATTGATGATCATGACTTCAAAGGAATCAATCCATCACCTTCATCATCAAATGGATATTGTTTTCCAAGCTACTTAATGAACAATGAAACTAATCTCACCAATTTCAATGGTCCATTAATGCAAAGAAGCACATTTTCATCACATCAACCTCAAACTCAAATCCAAATTCCAAACACTCCCTTGAATGAGAACATGTTATCAAATTATTCATACATGAATCAAGGGAATAATAGCAATGGTTACATTTATGGATTGGAAAATAAAGAGTGCAAGATGGAGCAATTCTCTACCAACAATTCTATGGTGAGCATTTCACAAGACACATGTTTGAGCAATGACATAAACAATGAGACATCATCTGTTGTTTCAAAGCAAGAAATTAGAAGGAATGCAACATTGTATGAAGAACTTGAGGAACCTTCTTCAATTGGTCCCCTCTCAAATCTTGAATCATGGGAATGGCTATTGAAGAGTTAA
Protein sequence

>Msa0185460

MEEPIVVNKSDEPLDLPAGFRFHPNDDEIITFYLLKKVLNSNFSAIAIGEADLNRCEPWDLPMKAKMGEKDWYFFCQRDRKYPTGTRTNRATESGYWKATGKDKEIYKGKSNQLVGMKKTLVFYKGRAPRGEKTNWVMHEFRLDGTLATCNLPRDAKDDWVVSKVFIKNNIEVKKTTSFSNLLRVNSIGDDLLDFSSLPPLVDPPFSNNTIDDHDFKGINPSPSSSNGYCFPSYLMNNETNLTNFNGPLMQRSTFSSHQPQTQIQIPNTPLNENMLSNYSYMNQGNNSNGYIYGLENKECKMEQFSTNNSMVSISQDTCLSNDINNETSSVVSKQEIRRNATLYEELEEPSSIGPLSNLESWEWLLKS*