AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0981040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0981040 MtrunA17_Chr6g0461661 93.085 376 17 1 2 368 4 379 0.0 712
Msa0981040 MtrunA17_Chr7g0253011 59.102 401 109 15 1 364 1 383 2.31e-139 401
Msa0981040 MtrunA17_Chr4g0060931 50.146 343 147 11 5 339 6 332 6.08e-100 300
Msa0981040 MtrunA17_Chr3g0091921 61.792 212 75 5 1 211 1 207 1.86e-88 268
Msa0981040 MtrunA17_Chr6g0453451 61.576 203 68 4 9 210 13 206 2.86e-84 258
Msa0981040 MtrunA17_Chr2g0316971 72.258 155 43 0 16 170 23 177 2.64e-82 255
Msa0981040 MtrunA17_Chr1g0147421 63.743 171 57 2 16 185 27 193 2.58e-73 232
Msa0981040 MtrunA17_Chr7g0217721 47.761 268 113 6 11 255 14 277 6.03e-71 225
Msa0981040 MtrunA17_Chr6g0484441 64.286 168 51 4 15 180 4 164 5.91e-70 222
Msa0981040 MtrunA17_Chr3g0139331 46.559 247 108 4 16 253 11 242 2.62e-68 218
Msa0981040 MtrunA17_Chr7g0217711 66.434 143 45 2 11 152 14 154 1.05e-64 203
Msa0981040 MtrunA17_Chr3g0144271 71.318 129 36 1 16 143 23 151 3.16e-63 207
Msa0981040 MtrunA17_Chr2g0312321 53.191 188 76 5 16 203 11 186 1.71e-60 197
Msa0981040 MtrunA17_Chr1g0183741 53.503 157 67 2 16 172 10 160 3.39e-55 182
Msa0981040 MtrunA17_Chr2g0309331 53.750 160 66 3 14 170 8 162 5.40e-54 181
Msa0981040 MtrunA17_Chr4g0017921 54.375 160 61 4 16 171 8 159 5.65e-53 179
Msa0981040 MtrunA17_Chr7g0261411 54.305 151 63 2 16 166 10 154 8.50e-53 176
Msa0981040 MtrunA17_Chr8g0372121 51.220 164 71 4 16 176 6 163 1.04e-52 177
Msa0981040 MtrunA17_Chr8g0359921 51.190 168 80 1 14 181 12 177 1.06e-52 177
Msa0981040 MtrunA17_Chr2g0309891 50.299 167 77 4 13 177 3 165 1.45e-52 177
Msa0981040 MtrunA17_Chr4g0056541 49.701 167 75 3 16 179 7 167 1.56e-52 178
Msa0981040 MtrunA17_Chr5g0417791 50.000 160 76 2 14 171 1 158 1.85e-52 174
Msa0981040 MtrunA17_Chr2g0318101 46.961 181 86 3 1 172 1 180 2.15e-52 177
Msa0981040 MtrunA17_Chr4g0047841 47.727 176 71 2 16 170 15 190 4.20e-52 176
Msa0981040 MtrunA17_Chr7g0252971 47.486 179 83 4 15 183 7 184 5.00e-52 176
Msa0981040 MtrunA17_Chr8g0346001 50.303 165 70 4 16 170 15 177 4.31e-51 176
Msa0981040 MtrunA17_Chr6g0481091 46.328 177 87 4 13 185 3 175 5.73e-51 170
Msa0981040 MtrunA17_Chr5g0405211 48.795 166 76 4 16 178 8 167 6.47e-51 173
Msa0981040 MtrunA17_Chr3g0109821 51.235 162 72 4 13 171 3 160 7.66e-51 180
Msa0981040 MtrunA17_Chr3g0124761 50.581 172 76 4 14 181 5 171 8.69e-51 171
Msa0981040 MtrunA17_Chr8g0361731 38.039 255 135 5 1 234 1 253 8.99e-51 174
Msa0981040 MtrunA17_Chr3g0113001 40.647 278 139 6 61 332 10 267 1.07e-50 171
Msa0981040 MtrunA17_Chr5g0433781 49.398 166 78 3 13 176 3 164 1.90e-50 178
Msa0981040 MtrunA17_Chr4g0018391 50.000 156 69 3 16 168 7 156 2.85e-50 171
Msa0981040 MtrunA17_Chr2g0318081 46.829 205 91 5 14 206 14 212 5.24e-50 171
Msa0981040 MtrunA17_Chr5g0398971 51.266 158 66 5 16 168 7 158 1.99e-49 169
Msa0981040 MtrunA17_Chr7g0263931 51.299 154 73 2 14 165 9 162 5.48e-49 167
Msa0981040 MtrunA17_Chr8g0384721 50.307 163 64 3 14 168 5 158 6.62e-49 166
Msa0981040 MtrunA17_Chr5g0417001 45.161 186 94 3 1 180 1 184 1.15e-48 169
Msa0981040 MtrunA17_Chr4g0042561 47.799 159 79 2 15 171 8 164 1.45e-48 165
Msa0981040 MtrunA17_Chr7g0214071 47.619 168 80 4 1 168 1 160 7.88e-48 162
Msa0981040 MtrunA17_Chr3g0130731 48.193 166 82 2 14 178 5 167 8.17e-48 164
Msa0981040 MtrunA17_Chr6g0453131 45.029 171 83 3 7 170 9 175 2.26e-47 165
Msa0981040 MtrunA17_Chr1g0200561 47.436 156 73 3 16 168 19 168 3.50e-47 164
Msa0981040 MtrunA17_Chr2g0326361 50.000 152 74 2 16 165 14 165 3.94e-47 162
Msa0981040 MtrunA17_Chr1g0201021 44.175 206 102 7 19 217 22 221 8.55e-47 167
Msa0981040 MtrunA17_Chr5g0400461 48.684 152 63 3 16 152 6 157 2.44e-44 155
Msa0981040 MtrunA17_Chr5g0428991 48.148 162 68 4 16 170 25 177 2.74e-44 161
Msa0981040 MtrunA17_Chr3g0128151 47.753 178 69 5 16 178 22 190 4.25e-44 160
Msa0981040 MtrunA17_Chr4g0054791 49.286 140 68 2 12 148 2 141 5.38e-43 152
Msa0981040 MtrunA17_Chr2g0311661 42.268 194 97 6 1 182 9 199 2.60e-42 149
Msa0981040 MtrunA17_Chr2g0311651 43.590 195 91 9 1 182 9 197 2.84e-42 149
Msa0981040 MtrunA17_Chr3g0130101 48.366 153 71 4 19 168 10 157 3.46e-42 150
Msa0981040 MtrunA17_Chr5g0442771 51.825 137 64 2 8 143 11 146 3.96e-42 149
Msa0981040 MtrunA17_Chr8g0364791 47.436 156 74 4 16 168 6 156 2.96e-41 150
Msa0981040 MtrunA17_Chr4g0076731 52.800 125 58 1 19 143 57 180 3.21e-41 150
Msa0981040 MtrunA17_Chr1g0197361 49.045 157 66 6 19 169 11 159 3.72e-41 152
Msa0981040 MtrunA17_Chr1g0197351 40.191 209 108 5 16 214 42 243 4.54e-41 150
Msa0981040 MtrunA17_Chr3g0092671 49.682 157 65 6 19 169 8 156 1.96e-40 149
Msa0981040 MtrunA17_Chr3g0128111 46.104 154 77 3 19 170 45 194 2.65e-40 142
Msa0981040 MtrunA17_Chr4g0038751 44.172 163 82 4 7 168 7 161 4.07e-40 144
Msa0981040 MtrunA17_Chr3g0113031 36.897 290 157 8 79 364 3 270 8.55e-40 142
Msa0981040 MtrunA17_Chr8g0384201 46.154 156 76 4 16 168 6 156 2.50e-39 145
Msa0981040 MtrunA17_Chr8g0345671 48.092 131 64 3 15 142 10 139 2.54e-35 133
Msa0981040 MtrunA17_Chr8g0385991 37.821 156 92 2 16 168 14 167 1.24e-34 127
Msa0981040 MtrunA17_Chr3g0131911 37.000 200 99 6 16 191 14 210 2.69e-34 126
Msa0981040 MtrunA17_Chr8g0345691 46.154 130 66 3 16 142 12 140 1.48e-32 126
Msa0981040 MtrunA17_Chr8g0345711 43.846 130 69 3 16 142 12 140 1.70e-31 117
Msa0981040 MtrunA17_Chr2g0321741 43.750 128 65 3 35 157 11 136 5.69e-31 120
Msa0981040 MtrunA17_Chr4g0026141 42.537 134 67 4 16 142 5 135 5.97e-29 113
Msa0981040 MtrunA17_Chr2g0321631 40.299 134 73 3 15 142 3 135 2.73e-28 110
Msa0981040 MtrunA17_Chr8g0345731 41.353 133 71 5 16 142 24 155 3.37e-27 105
Msa0981040 MtrunA17_Chr8g0345701 40.972 144 65 5 16 142 7 147 3.24e-26 103
Msa0981040 MtrunA17_Chr4g0050701 30.851 188 118 2 16 199 11 190 3.51e-24 98.2
Msa0981040 MtrunA17_Chr7g0266701 38.060 134 76 4 15 142 3 135 4.05e-24 99.8
Msa0981040 MtrunA17_Chr7g0243371 51.282 78 38 0 69 146 17 94 4.19e-24 95.9
Msa0981040 MtrunA17_Chr8g0345721 33.533 167 77 4 13 147 32 196 1.18e-23 97.4
Msa0981040 MtrunA17_Chr8g0345741 39.316 117 66 3 30 142 4 119 8.65e-23 93.6
Msa0981040 MtrunA17_Chr7g0251661 35.821 134 80 4 10 141 4 133 1.01e-19 85.1
Msa0981040 MtrunA17_Chr8g0384351 34.591 159 80 5 10 168 4 138 7.24e-18 80.9
Msa0981040 MtrunA17_Chr7g0251651 33.571 140 86 5 10 147 12 146 1.76e-17 79.7
Msa0981040 MtrunA17_Chr7g0251671 34.109 129 79 4 15 141 9 133 6.40e-17 77.4
Msa0981040 MtrunA17_Chr3g0113011 57.692 52 22 0 11 62 14 65 6.52e-17 74.7
Msa0981040 MtrunA17_Chr4g0046431 32.864 213 103 10 16 201 68 267 1.32e-16 79.7
Msa0981040 MtrunA17_Chr3g0130321 30.337 178 103 7 16 181 7 175 3.04e-15 73.9
Msa0981040 MtrunA17_Chr3g0113041 53.846 52 24 0 11 62 14 65 6.93e-15 68.9
Msa0981040 MtrunA17_Chr7g0274971 28.977 176 106 7 22 189 11 175 1.27e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0981040 AT5G18270.2 51.420 352 112 11 1 338 5 311 3.90e-107 318
Msa0981040 AT5G18270.1 51.136 352 113 11 1 338 5 311 8.01e-107 317
Msa0981040 AT3G04060.1 46.900 371 157 8 2 368 4 338 4.72e-99 297
Msa0981040 AT5G07680.1 46.448 366 148 12 5 364 6 329 5.29e-92 279
Msa0981040 AT5G07680.2 47.059 357 141 12 14 364 1 315 6.98e-91 276
Msa0981040 AT5G61430.1 44.892 372 145 13 1 356 1 328 6.25e-89 271
Msa0981040 AT3G29035.1 49.495 297 121 7 12 290 20 305 9.57e-83 255
Msa0981040 AT5G39610.1 70.303 165 47 1 5 169 9 171 1.65e-81 251
Msa0981040 AT3G15170.1 55.660 212 86 2 11 215 16 226 2.34e-77 241
Msa0981040 AT5G53950.1 67.949 156 50 0 16 171 17 172 2.53e-77 243
Msa0981040 AT1G76420.1 64.103 156 47 2 16 168 22 171 2.25e-69 221
Msa0981040 AT3G18400.1 63.750 160 53 2 15 174 4 158 3.44e-69 220
Msa0981040 AT2G24430.2 58.333 168 67 1 1 168 1 165 1.30e-67 216
Msa0981040 AT2G24430.1 58.333 168 67 1 1 168 1 165 1.30e-67 216
Msa0981040 AT1G56010.2 49.761 209 88 5 16 216 19 218 1.56e-62 203
Msa0981040 AT3G12977.1 54.487 156 68 2 15 170 17 169 2.96e-61 198
Msa0981040 AT5G61430.2 41.883 308 119 13 65 356 2 265 5.38e-59 192
Msa0981040 AT4G10350.1 52.830 159 68 3 16 171 9 163 4.96e-54 181
Msa0981040 AT1G33280.1 52.830 159 65 3 16 171 8 159 2.09e-53 179
Msa0981040 AT3G17730.1 50.932 161 73 3 13 171 3 159 9.99e-53 175
Msa0981040 AT4G27410.2 40.741 243 116 5 14 234 12 248 4.76e-52 175
Msa0981040 AT1G12260.2 49.701 167 75 3 16 179 7 167 9.27e-52 176
Msa0981040 AT1G12260.1 49.701 167 75 3 16 179 7 167 1.14e-51 177
Msa0981040 AT5G08790.1 50.602 166 64 3 14 170 5 161 1.23e-51 174
Msa0981040 AT3G61910.1 47.953 171 71 4 16 171 11 178 1.86e-51 174
Msa0981040 AT3G03200.1 51.829 164 74 3 13 174 3 163 2.74e-51 178
Msa0981040 AT4G36160.2 46.409 181 86 5 6 181 4 178 3.46e-51 175
Msa0981040 AT1G61110.1 50.909 165 70 3 16 170 16 179 3.64e-51 174
Msa0981040 AT2G46770.1 47.368 171 74 4 16 172 16 184 5.92e-51 174
Msa0981040 AT4G36160.1 47.727 176 81 5 11 181 5 174 5.94e-51 174
Msa0981040 AT4G36160.3 47.727 176 81 5 11 181 5 174 5.94e-51 174
Msa0981040 AT1G77450.1 48.603 179 84 3 9 184 3 176 7.18e-51 171
Msa0981040 AT4G28530.1 44.240 217 90 6 16 209 10 218 1.00e-50 173
Msa0981040 AT3G04070.2 50.000 166 75 4 16 173 10 175 1.66e-50 172
Msa0981040 AT1G79580.3 50.625 160 70 3 14 170 15 168 2.51e-50 173
Msa0981040 AT1G79580.5 50.625 160 70 3 14 170 15 168 2.51e-50 173
Msa0981040 AT1G79580.4 50.625 160 70 3 14 170 15 168 2.51e-50 173
Msa0981040 AT1G79580.2 50.625 160 70 3 14 170 15 168 2.51e-50 173
Msa0981040 AT1G79580.1 50.625 160 70 3 14 170 15 168 2.51e-50 173
Msa0981040 AT2G18060.3 47.929 169 79 4 12 177 5 167 2.95e-50 172
Msa0981040 AT2G18060.1 47.929 169 79 4 12 177 5 167 2.95e-50 172
Msa0981040 AT5G63790.1 51.266 158 71 2 14 168 48 202 3.61e-50 171
Msa0981040 AT5G63790.2 51.266 158 71 2 14 168 58 212 4.08e-50 171
Msa0981040 AT5G04410.1 53.503 157 65 4 16 169 9 160 6.23e-50 176
Msa0981040 AT5G17260.1 50.610 164 76 3 13 174 3 163 6.23e-50 174
Msa0981040 AT1G62700.1 51.282 156 67 3 16 168 7 156 9.97e-50 172
Msa0981040 AT1G62700.2 51.282 156 67 3 16 168 7 156 9.97e-50 172
Msa0981040 AT1G01720.1 48.193 166 81 2 12 175 3 165 1.55e-49 168
Msa0981040 AT1G65910.1 48.447 161 77 3 13 171 3 159 3.91e-49 175
Msa0981040 AT1G71930.2 49.682 157 68 5 16 168 9 158 4.87e-49 168
Msa0981040 AT1G71930.1 49.682 157 68 5 16 168 9 158 4.87e-49 168
Msa0981040 AT1G32770.1 47.619 168 75 3 16 172 16 181 6.45e-49 169
Msa0981040 AT1G26870.1 45.349 172 87 1 16 180 16 187 1.22e-48 169
Msa0981040 AT1G69490.1 50.000 156 74 3 16 169 9 162 1.37e-48 165
Msa0981040 AT3G10500.1 52.229 157 67 4 16 169 9 160 1.52e-48 172
Msa0981040 AT3G04070.1 45.604 182 75 4 16 173 10 191 1.76e-48 167
Msa0981040 AT5G39820.1 53.521 142 64 2 2 143 8 147 1.97e-48 167
Msa0981040 AT5G62380.2 50.641 156 68 4 16 168 7 156 2.63e-48 167
Msa0981040 AT5G62380.1 50.641 156 68 4 16 168 7 156 2.63e-48 167
Msa0981040 AT3G15500.1 48.538 171 80 4 14 183 12 175 3.84e-48 166
Msa0981040 AT5G13180.1 50.323 155 71 2 14 168 12 160 4.33e-48 163
Msa0981040 AT3G15510.1 46.875 160 76 2 20 170 21 180 5.40e-48 166
Msa0981040 AT5G66300.1 46.012 163 80 3 11 170 7 164 6.23e-48 164
Msa0981040 AT1G52890.1 50.000 164 76 3 14 176 12 170 8.24e-48 164
Msa0981040 AT4G27410.3 38.077 260 116 6 14 234 12 265 9.43e-48 164
Msa0981040 AT5G46590.1 49.080 163 73 4 16 173 6 163 1.78e-47 163
Msa0981040 AT3G10480.1 53.125 160 66 4 16 171 27 181 1.82e-47 167
Msa0981040 AT3G10480.2 52.532 158 69 3 16 171 27 180 3.67e-47 166
Msa0981040 AT3G10490.1 51.875 160 68 4 16 171 27 181 5.27e-47 160
Msa0981040 AT5G46590.2 49.032 155 73 3 16 165 6 159 1.48e-46 160
Msa0981040 AT1G54330.1 48.485 165 75 4 13 175 3 159 3.05e-46 160
Msa0981040 AT3G10490.2 51.875 160 68 4 16 171 27 181 5.49e-46 163
Msa0981040 AT1G33060.1 55.797 138 52 3 16 146 24 159 1.18e-45 166
Msa0981040 AT1G33060.2 55.797 138 52 3 16 146 24 159 1.18e-45 166
Msa0981040 AT4G35580.1 55.072 138 53 3 16 146 9 144 4.10e-45 162
Msa0981040 AT4G35580.3 55.072 138 53 3 16 146 9 144 5.77e-45 162
Msa0981040 AT4G35580.2 55.072 138 53 3 16 146 9 144 6.11e-45 162
Msa0981040 AT4G17980.1 53.077 130 59 1 16 143 6 135 7.29e-45 155
Msa0981040 AT5G24590.2 38.961 231 117 7 16 232 13 233 1.18e-44 160
Msa0981040 AT4G17980.2 53.077 130 59 1 16 143 6 135 1.26e-44 155
Msa0981040 AT3G49530.2 45.238 168 87 3 16 181 13 177 3.95e-44 157
Msa0981040 AT2G27300.1 48.252 143 67 3 19 156 17 157 7.02e-44 155
Msa0981040 AT2G33480.2 49.068 161 61 4 14 168 13 158 7.75e-44 153
Msa0981040 AT5G64060.1 42.262 168 89 4 16 180 6 168 8.68e-44 155
Msa0981040 AT2G33480.1 49.686 159 65 4 14 168 13 160 8.99e-44 152
Msa0981040 AT2G17040.1 46.795 156 74 4 14 168 5 152 1.21e-43 152
Msa0981040 AT3G49530.1 53.488 129 57 2 16 142 13 140 1.47e-43 157
Msa0981040 AT2G02450.1 53.600 125 57 1 19 143 54 177 3.35e-43 154
Msa0981040 AT2G43000.1 37.768 233 133 4 19 245 21 247 3.97e-43 151
Msa0981040 AT2G02450.2 53.600 125 57 1 19 143 54 177 4.48e-43 155
Msa0981040 AT1G56010.1 50.314 159 63 4 65 216 2 151 6.39e-42 147
Msa0981040 AT3G10480.3 42.424 198 62 4 16 171 27 214 3.31e-41 152
Msa0981040 AT5G09330.5 45.860 157 77 4 16 169 6 157 5.24e-41 150
Msa0981040 AT5G09330.2 45.860 157 77 4 16 169 6 157 5.24e-41 150
Msa0981040 AT5G09330.4 45.860 157 77 4 16 169 6 157 5.24e-41 150
Msa0981040 AT5G09330.3 45.860 157 77 4 16 169 6 157 5.24e-41 150
Msa0981040 AT5G09330.1 45.860 157 77 4 16 169 6 157 5.24e-41 150
Msa0981040 AT1G32510.1 41.053 190 98 4 16 195 6 191 1.20e-40 145
Msa0981040 AT1G34180.3 45.806 155 74 5 19 169 19 167 1.82e-40 148
Msa0981040 AT1G34190.1 45.806 155 74 5 19 169 19 167 2.63e-40 150
Msa0981040 AT1G52880.1 46.541 159 77 3 20 170 21 179 4.04e-40 144
Msa0981040 AT1G34180.1 45.806 155 74 5 19 169 19 167 6.37e-40 149
Msa0981040 AT3G12910.1 51.471 136 61 4 11 143 17 150 3.17e-39 142
Msa0981040 AT3G12977.2 46.980 149 72 4 65 209 14 159 4.31e-39 139
Msa0981040 AT1G34180.4 42.515 167 74 5 19 169 19 179 1.36e-38 144
Msa0981040 AT1G34180.2 42.515 167 74 5 19 169 19 179 4.69e-38 144
Msa0981040 AT1G32870.3 47.059 170 82 5 3 169 33 197 6.15e-38 143
Msa0981040 AT1G32870.1 48.408 157 73 5 16 169 10 161 1.08e-37 142
Msa0981040 AT1G32870.2 48.408 157 73 5 16 169 10 161 1.13e-37 142
Msa0981040 AT5G22290.1 42.657 143 74 3 19 155 24 164 2.08e-37 138
Msa0981040 AT3G44290.2 43.056 144 75 3 19 157 17 158 6.28e-37 133
Msa0981040 AT3G44290.1 43.056 144 75 3 19 157 17 158 2.45e-36 135
Msa0981040 AT5G04395.1 44.366 142 65 2 16 143 28 169 1.43e-34 126
Msa0981040 AT4G10350.2 53.509 114 46 3 61 171 7 116 1.93e-34 129
Msa0981040 AT4G28530.2 46.094 128 53 1 16 127 10 137 3.42e-30 118
Msa0981040 AT2G33480.3 53.000 100 43 2 69 168 8 103 1.54e-27 108
Msa0981040 AT1G02230.1 38.542 192 95 9 17 203 4 177 1.68e-27 111
Msa0981040 AT4G01550.1 40.000 155 82 6 18 168 6 153 3.52e-27 112
Msa0981040 AT3G44350.2 33.540 161 100 4 15 170 4 162 5.58e-26 104
Msa0981040 AT3G44350.1 36.025 161 92 5 15 168 4 160 2.33e-25 100
Msa0981040 AT5G22380.1 33.750 160 97 5 15 167 4 161 2.55e-25 102
Msa0981040 AT1G02250.1 40.458 131 70 4 17 142 4 131 3.52e-24 102
Msa0981040 AT3G04420.2 39.535 129 72 3 17 141 4 130 1.30e-23 99.8
Msa0981040 AT4G01520.1 38.961 154 82 7 17 165 5 151 1.79e-23 99.4
Msa0981040 AT3G04420.1 39.535 129 72 3 17 141 4 130 5.45e-23 99.0
Msa0981040 AT4G01540.4 39.355 155 82 7 19 168 7 154 1.25e-22 98.6
Msa0981040 AT4G01540.3 39.355 155 82 7 19 168 7 154 1.33e-22 98.6
Msa0981040 AT5G64530.2 36.154 130 71 2 14 143 1 118 1.49e-22 93.2
Msa0981040 AT4G01540.1 39.355 155 82 7 19 168 7 154 1.72e-22 99.0
Msa0981040 AT4G01540.2 39.474 152 80 7 19 165 7 151 1.76e-22 98.6
Msa0981040 AT5G64530.1 36.154 130 71 2 14 143 1 118 2.85e-22 93.2
Msa0981040 AT1G01010.1 32.941 170 88 6 18 167 5 168 2.55e-21 95.1
Msa0981040 AT3G10490.4 58.824 85 28 3 89 171 2 81 1.15e-20 92.4
Msa0981040 AT3G10490.3 58.824 85 28 3 89 171 2 81 1.15e-20 92.4
Msa0981040 AT5G50820.1 34.731 167 87 7 14 170 15 169 4.15e-20 87.4
Msa0981040 AT1G02220.1 36.364 132 75 4 14 141 1 127 4.81e-20 90.9
Msa0981040 AT2G43000.2 40.496 121 69 2 78 198 2 119 8.40e-19 84.0
Msa0981040 AT2G18060.2 47.619 84 38 3 94 177 2 79 9.01e-18 82.8
Msa0981040 AT5G14000.2 34.694 147 87 4 1 145 3 142 1.59e-17 79.3
Msa0981040 AT5G14000.1 31.073 177 108 5 1 175 3 167 3.77e-17 79.7
Msa0981040 AT5G22290.2 45.455 66 29 2 95 155 2 65 5.34e-15 74.3
Msa0981040 AT1G28470.1 34.682 173 84 9 16 170 77 238 9.21e-14 71.6
Msa0981040 AT3G56530.1 28.846 156 100 5 16 167 52 200 1.04e-12 68.6
Msa0981040 AT3G04430.1 32.576 132 77 3 22 142 6 136 1.41e-12 66.6
Msa0981040 AT4G29230.1 32.597 181 85 10 14 168 46 215 3.49e-12 68.2
Msa0981040 AT4G29230.2 32.597 181 85 10 14 168 45 214 3.55e-12 67.8
Msa0981040 AT4G29230.3 32.961 179 83 10 14 166 46 213 3.80e-12 67.8
Msa0981040 AT4G28500.1 32.948 173 88 8 16 170 59 221 4.34e-12 66.6
Msa0981040 AT3G55210.1 27.545 167 97 6 16 167 11 168 8.30e-12 65.5
Msa0981040 AT1G25580.1 30.732 205 106 11 16 204 58 242 2.38e-11 65.5

Find 86 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAGCAATGGTTACATTTA+TGG 0.087192 6_4:-19780539 Msa0981040:CDS
TCAAGGGTGTGTTTGGAATT+TGG 0.153879 6_4:+19780606 None:intergenic
CTCAATAGGTGATGATTTAT+TGG 0.165403 6_4:-19780840 Msa0981040:CDS
TGAGGGTGAATTATATATTA+TGG 0.206850 6_4:+19782212 None:intergenic
AATGTGCTTCTTTGCATTAA+TGG 0.210014 6_4:+19780656 None:intergenic
TTATATATATGTGAGAAATT+TGG 0.224266 6_4:+19782248 None:intergenic
AGAAATTTCGAAGAAATTAA+AGG 0.232856 6_4:+19782311 None:intergenic
CATTAATGGACCATTGAAAT+TGG 0.275416 6_4:+19780670 None:intergenic
GTTGTTTCAAAGCAAGAAAT+TGG 0.286514 6_4:-19780407 Msa0981040:CDS
GTAATGATTTCATCATCATT+AGG 0.301951 6_4:+19782068 None:intergenic
TTCTCATTCAAGGGTGTGTT+TGG 0.320860 6_4:+19780599 None:intergenic
AAAAGAAATGTGAAGAATAT+TGG 0.322654 6_4:+19782349 None:intergenic
TGAGTTCACCCTTAAAAGAT+TGG 0.333752 6_4:+19780859 None:intergenic
TCAATGGTATTGTTGCTAAA+AGG 0.335190 6_4:+19780785 None:intergenic
AAAACTCTTGTGTTCTATAA+AGG 0.349650 6_4:-19781608 Msa0981040:CDS
GAACCTCTTGATTTGCCTGC+TGG 0.358232 6_4:-19782104 Msa0981040:CDS
TATAGTATAATAATATAATA+TGG 0.359598 6_4:+19782180 None:intergenic
ACTAATAGAGCAACTGAATC+AGG 0.363531 6_4:-19781701 Msa0981040:CDS
GAGCAACTGAATCAGGCTAT+TGG 0.368357 6_4:-19781694 Msa0981040:CDS
ATTCTCTACCAACAATTCTA+TGG 0.370549 6_4:-19780486 Msa0981040:CDS
ATATATAATTGCAGGATGAT+TGG 0.372396 6_4:-19780940 Msa0981040:intron
TAATGATTTCATCATCATTA+GGG 0.381801 6_4:+19782069 None:intergenic
TAGCAACTTGCAATCTTCCT+AGG 0.387999 6_4:-19781523 Msa0981040:CDS
TGATAACATGTTCTCATTCA+AGG 0.390664 6_4:+19780589 None:intergenic
TTCTTCACTTCCACCTCTTG+TGG 0.398001 6_4:-19780813 Msa0981040:CDS
CAATGGTTACATTTATGGAT+TGG 0.400827 6_4:-19780534 Msa0981040:CDS
GGTCATGCATGAATTTAGAT+TGG 0.403946 6_4:-19781555 Msa0981040:CDS
CTATTAGTTCTTGTTCCAGT+TGG 0.407304 6_4:+19781716 None:intergenic
CTAAGATGGGAGAGAAAGAT+TGG 0.407819 6_4:-19781769 Msa0981040:CDS
CCCTCTCAAATCTTGAATCA+TGG 0.416301 6_4:-19780334 Msa0981040:CDS
CTTGAGGGACCTTCATCAAT+TGG 0.427017 6_4:-19780359 Msa0981040:CDS
GGAATTTGGATTTGAGTTTG+AGG 0.428910 6_4:+19780620 None:intergenic
TCAGGCTATTGGAAAGCAAC+TGG 0.434898 6_4:-19781683 Msa0981040:CDS
AAATTCATGCATGACCCAAT+TGG 0.452348 6_4:+19781562 None:intergenic
TTTGAATAGGTGTGAGCCTT+GGG 0.455631 6_4:-19781982 Msa0981040:CDS
AATTATTCATACATGAATCA+AGG 0.456946 6_4:-19780566 Msa0981040:CDS
AATGCTCACCATAGAATTGT+TGG 0.464393 6_4:+19780478 None:intergenic
TTTGAAGTCATGATCATCAA+TGG 0.465809 6_4:+19780769 None:intergenic
TTGGTGAAGCTGATTTGAAT+AGG 0.466419 6_4:-19781995 Msa0981040:CDS
ATGCATGAATTTAGATTGGA+TGG 0.466731 6_4:-19781551 Msa0981040:CDS
TATATAATTGCAGGATGATT+GGG 0.467236 6_4:-19780939 Msa0981040:intron
CAAGAGGAGAGAAAACCAAT+TGG 0.473553 6_4:-19781577 Msa0981040:CDS
CCATCACCTTCATCATCAAA+TGG 0.475218 6_4:-19780737 Msa0981040:CDS
TCATTGTTCATTAAGTAGCT+TGG 0.477838 6_4:+19780704 None:intergenic
CAATATCCATTTGATGATGA+AGG 0.479530 6_4:+19780731 None:intergenic
CCTCTCAAATCTTGAATCAT+GGG 0.480354 6_4:-19780333 Msa0981040:CDS
GATAACATGTTCTCATTCAA+GGG 0.484003 6_4:+19780590 None:intergenic
ATGAGAATCTTATATGAAAG+AGG 0.487323 6_4:+19782285 None:intergenic
ATTTGAATAGGTGTGAGCCT+TGG 0.489701 6_4:-19781983 Msa0981040:CDS
GGGAAAAGTAACCAACTTGT+TGG 0.500121 6_4:-19781638 Msa0981040:CDS
ACTAATCTCACCAATTTCAA+TGG 0.503686 6_4:-19780680 Msa0981040:CDS
TTTCAAAGCAAGAAATTGGA+AGG 0.507485 6_4:-19780403 Msa0981040:CDS
CCATGATTCAAGATTTGAGA+GGG 0.508069 6_4:+19780334 None:intergenic
AGAGATAGGAAATATCCAAC+TGG 0.508548 6_4:-19781731 Msa0981040:CDS
AACAATAGGTTCTTCCATGA+TGG 0.509865 6_4:+19782142 None:intergenic
GGATGATTGGGTTGTGTCAA+AGG 0.512395 6_4:-19780927 Msa0981040:CDS
GTGAAGAATATTGGAAGGGA+AGG 0.519956 6_4:+19782358 None:intergenic
GAGAGGGGACCAATTGATGA+AGG 0.528326 6_4:+19780350 None:intergenic
AGCAACTTGCAATCTTCCTA+GGG 0.533847 6_4:-19781522 Msa0981040:CDS
AAGAGGAGAGAAAACCAATT+GGG 0.538998 6_4:-19781576 Msa0981040:CDS
CAAATCTTGAATCATGGGAA+TGG 0.541002 6_4:-19780328 Msa0981040:CDS
GTGAATTATATATTATGGCT+AGG 0.542636 6_4:+19782217 None:intergenic
GAGGGTACCTTTGCATCCCT+AGG 0.549703 6_4:+19781506 None:intergenic
GAAATGTGAAGAATATTGGA+AGG 0.552552 6_4:+19782353 None:intergenic
TTTGTAGTGAAAGCTAAGAT+GGG 0.554108 6_4:-19781782 Msa0981040:intron
GGAAAATAAAGAGTGCAAGA+TGG 0.554428 6_4:-19780513 Msa0981040:CDS
CCATTTGATGATGAAGGTGA+TGG 0.556150 6_4:+19780737 None:intergenic
ATTATTCATACATGAATCAA+GGG 0.558255 6_4:-19780565 Msa0981040:CDS
CCCATGATTCAAGATTTGAG+AGG 0.558765 6_4:+19780333 None:intergenic
AACATTGTATGAAGAACTTG+AGG 0.560044 6_4:-19780375 Msa0981040:CDS
AAAGATAAAGAGATCTACAA+AGG 0.563281 6_4:-19781659 Msa0981040:CDS
AAGATAAAGAGATCTACAAA+GGG 0.564009 6_4:-19781658 Msa0981040:CDS
GGGTGAAATCTGAAACCAGC+AGG 0.566266 6_4:+19782089 None:intergenic
ATTGATGATCATGACTTCAA+AGG 0.574039 6_4:-19780767 Msa0981040:CDS
CAATCTTCCTAGGGATGCAA+AGG 0.581965 6_4:-19781513 Msa0981040:intron
TACTTACTTGGTAAATCCCA+AGG 0.598796 6_4:+19781966 None:intergenic
AAAGGAGGATCCACAAGAGG+TGG 0.605804 6_4:+19780803 None:intergenic
AATCAAGGGAATAATAGCAA+TGG 0.606407 6_4:-19780551 Msa0981040:CDS
ATGGTATTGTTGCTAAAAGG+AGG 0.620808 6_4:+19780788 None:intergenic
AAATGTGAAGAATATTGGAA+GGG 0.629624 6_4:+19782354 None:intergenic
AAACCAGCAGGCAAATCAAG+AGG 0.637474 6_4:+19782101 None:intergenic
CATGATTCAAGATTTGAGAG+GGG 0.641900 6_4:+19780335 None:intergenic
ACATTGTATGAAGAACTTGA+GGG 0.644551 6_4:-19780374 Msa0981040:CDS
CTAAAAGGAGGATCCACAAG+AGG 0.668774 6_4:+19780800 None:intergenic
AATTATATATTATGGCTAGG+TGG 0.669895 6_4:+19782220 None:intergenic
TATAAAGGTAGAGCTCCAAG+AGG 0.710079 6_4:-19781593 Msa0981040:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATATATGTGAGAAATT+TGG + chr6_4:19780426-19780445 None:intergenic 15.0%
!! AAAAGAAAATAATACTTACT+TGG + chr6_4:19780720-19780739 None:intergenic 15.0%
!! CAAAAGAAAAAAAATTAAGA+GGG + chr6_4:19781186-19781205 None:intergenic 15.0%
!! ACAAAAGAAAAAAAATTAAG+AGG + chr6_4:19781187-19781206 None:intergenic 15.0%
!!! TTTTCTAAATCAAAAGAAAA+TGG + chr6_4:19781212-19781231 None:intergenic 15.0%
!!! ATTTTCTTTTGATTTAGAAA+AGG - chr6_4:19781211-19781230 Msa0981040:intron 15.0%
!! TCAATATAAAAATTAATGCA+AGG - chr6_4:19781265-19781284 Msa0981040:intron 15.0%
!!! ATAAAAAGAACTCATAATTT+TGG + chr6_4:19781527-19781546 None:intergenic 15.0%
!! TTATATATATGTGAGAAATT+TGG + chr6_4:19780426-19780445 None:intergenic 15.0%
!! AAAAGAAAATAATACTTACT+TGG + chr6_4:19780720-19780739 None:intergenic 15.0%
!! CAAAAGAAAAAAAATTAAGA+GGG + chr6_4:19781186-19781205 None:intergenic 15.0%
!! ACAAAAGAAAAAAAATTAAG+AGG + chr6_4:19781187-19781206 None:intergenic 15.0%
!!! TTTTCTAAATCAAAAGAAAA+TGG + chr6_4:19781212-19781231 None:intergenic 15.0%
!!! ATTTTCTTTTGATTTAGAAA+AGG - chr6_4:19781211-19781230 Msa0981040:intron 15.0%
!! TCAATATAAAAATTAATGCA+AGG - chr6_4:19781265-19781284 Msa0981040:intron 15.0%
!!! ATAAAAAGAACTCATAATTT+TGG + chr6_4:19781527-19781546 None:intergenic 15.0%
!! AAAAGAAATGTGAAGAATAT+TGG + chr6_4:19780325-19780344 None:intergenic 20.0%
!! AGAAATTTCGAAGAAATTAA+AGG + chr6_4:19780363-19780382 None:intergenic 20.0%
!!! TAATATGGTTTTGATTTTGA+GGG + chr6_4:19780479-19780498 None:intergenic 20.0%
!!! ATAATATGGTTTTGATTTTG+AGG + chr6_4:19780480-19780499 None:intergenic 20.0%
!! TAATGATTTCATCATCATTA+GGG + chr6_4:19780605-19780624 None:intergenic 20.0%
!!! TACTTTTTATTTGCTTAAGA+AGG - chr6_4:19780623-19780642 Msa0981040:CDS 20.0%
!! TTGATATGATATATAATTGC+AGG - chr6_4:19781723-19781742 Msa0981040:CDS 20.0%
!!! TTCATTTTCCAATCTTTTAA+GGG - chr6_4:19781804-19781823 Msa0981040:intron 20.0%
!! AATTATTCATACATGAATCA+AGG - chr6_4:19782105-19782124 Msa0981040:CDS 20.0%
!! ATTATTCATACATGAATCAA+GGG - chr6_4:19782106-19782125 Msa0981040:CDS 20.0%
!! AAAAGAAATGTGAAGAATAT+TGG + chr6_4:19780325-19780344 None:intergenic 20.0%
!! AGAAATTTCGAAGAAATTAA+AGG + chr6_4:19780363-19780382 None:intergenic 20.0%
!!! TAATATGGTTTTGATTTTGA+GGG + chr6_4:19780479-19780498 None:intergenic 20.0%
!!! ATAATATGGTTTTGATTTTG+AGG + chr6_4:19780480-19780499 None:intergenic 20.0%
!! TAATGATTTCATCATCATTA+GGG + chr6_4:19780605-19780624 None:intergenic 20.0%
!!! TACTTTTTATTTGCTTAAGA+AGG - chr6_4:19780623-19780642 Msa0981040:CDS 20.0%
!! TTGATATGATATATAATTGC+AGG - chr6_4:19781723-19781742 Msa0981040:CDS 20.0%
!!! TTCATTTTCCAATCTTTTAA+GGG - chr6_4:19781804-19781823 Msa0981040:intron 20.0%
!! AATTATTCATACATGAATCA+AGG - chr6_4:19782105-19782124 Msa0981040:CDS 20.0%
!! ATTATTCATACATGAATCAA+GGG - chr6_4:19782106-19782125 Msa0981040:CDS 20.0%
! AAATGTGAAGAATATTGGAA+GGG + chr6_4:19780320-19780339 None:intergenic 25.0%
! ATGAGAATCTTATATGAAAG+AGG + chr6_4:19780389-19780408 None:intergenic 25.0%
! AATTATATATTATGGCTAGG+TGG + chr6_4:19780454-19780473 None:intergenic 25.0%
! GTGAATTATATATTATGGCT+AGG + chr6_4:19780457-19780476 None:intergenic 25.0%
! TGAGGGTGAATTATATATTA+TGG + chr6_4:19780462-19780481 None:intergenic 25.0%
!!! AGTTTTTTCATTATCCATCA+TGG - chr6_4:19780515-19780534 Msa0981040:CDS 25.0%
! GTAATGATTTCATCATCATT+AGG + chr6_4:19780606-19780625 None:intergenic 25.0%
!!! AATTTTAGTGCAATTGCAAT+TGG - chr6_4:19780657-19780676 Msa0981040:CDS 25.0%
! CAATCATATATAACTAACTC+CGG + chr6_4:19780828-19780847 None:intergenic 25.0%
!! ATTTCTTTTGTCAAAGAGAT+AGG - chr6_4:19780926-19780945 Msa0981040:CDS 25.0%
! AAAGATAAAGAGATCTACAA+AGG - chr6_4:19781012-19781031 Msa0981040:intron 25.0%
! AAGATAAAGAGATCTACAAA+GGG - chr6_4:19781013-19781032 Msa0981040:intron 25.0%
! AAAACTCTTGTGTTCTATAA+AGG - chr6_4:19781063-19781082 Msa0981040:intron 25.0%
!!! ATTAATGCAAGGTTTTATTG+TGG - chr6_4:19781276-19781295 Msa0981040:intron 25.0%
!! TCTAATTCATCTAATTTGCA+AGG + chr6_4:19781332-19781351 None:intergenic 25.0%
! AGTTTCAATTCAAGTACAAT+GGG + chr6_4:19781375-19781394 None:intergenic 25.0%
!! ATTTTGTCGTAATTCTCAAT+TGG + chr6_4:19781469-19781488 None:intergenic 25.0%
!!! AAAGAACTCATAATTTTGGT+CGG + chr6_4:19781523-19781542 None:intergenic 25.0%
!! AGAAAGAAAGAAAAAGTGTA+AGG + chr6_4:19781688-19781707 None:intergenic 25.0%
!!! TACACTTTTTCTTTCTTTCT+TGG - chr6_4:19781688-19781707 Msa0981040:CDS 25.0%
! ATATATAATTGCAGGATGAT+TGG - chr6_4:19781731-19781750 Msa0981040:CDS 25.0%
! TATATAATTGCAGGATGATT+GGG - chr6_4:19781732-19781751 Msa0981040:CDS 25.0%
!! CTTCATTTTCCAATCTTTTA+AGG - chr6_4:19781803-19781822 Msa0981040:intron 25.0%
! AATAGCAATGGTTACATTTA+TGG - chr6_4:19782132-19782151 Msa0981040:CDS 25.0%
! AAATGTGAAGAATATTGGAA+GGG + chr6_4:19780320-19780339 None:intergenic 25.0%
! ATGAGAATCTTATATGAAAG+AGG + chr6_4:19780389-19780408 None:intergenic 25.0%
! AATTATATATTATGGCTAGG+TGG + chr6_4:19780454-19780473 None:intergenic 25.0%
! GTGAATTATATATTATGGCT+AGG + chr6_4:19780457-19780476 None:intergenic 25.0%
! TGAGGGTGAATTATATATTA+TGG + chr6_4:19780462-19780481 None:intergenic 25.0%
!!! AGTTTTTTCATTATCCATCA+TGG - chr6_4:19780515-19780534 Msa0981040:CDS 25.0%
! GTAATGATTTCATCATCATT+AGG + chr6_4:19780606-19780625 None:intergenic 25.0%
!!! AATTTTAGTGCAATTGCAAT+TGG - chr6_4:19780657-19780676 Msa0981040:CDS 25.0%
! CAATCATATATAACTAACTC+CGG + chr6_4:19780828-19780847 None:intergenic 25.0%
!! ATTTCTTTTGTCAAAGAGAT+AGG - chr6_4:19780926-19780945 Msa0981040:CDS 25.0%
! AAAGATAAAGAGATCTACAA+AGG - chr6_4:19781012-19781031 Msa0981040:intron 25.0%
! AAGATAAAGAGATCTACAAA+GGG - chr6_4:19781013-19781032 Msa0981040:intron 25.0%
! AAAACTCTTGTGTTCTATAA+AGG - chr6_4:19781063-19781082 Msa0981040:intron 25.0%
!!! ATTAATGCAAGGTTTTATTG+TGG - chr6_4:19781276-19781295 Msa0981040:intron 25.0%
!! TCTAATTCATCTAATTTGCA+AGG + chr6_4:19781332-19781351 None:intergenic 25.0%
! AGTTTCAATTCAAGTACAAT+GGG + chr6_4:19781375-19781394 None:intergenic 25.0%
!! ATTTTGTCGTAATTCTCAAT+TGG + chr6_4:19781469-19781488 None:intergenic 25.0%
!!! AAAGAACTCATAATTTTGGT+CGG + chr6_4:19781523-19781542 None:intergenic 25.0%
!! AGAAAGAAAGAAAAAGTGTA+AGG + chr6_4:19781688-19781707 None:intergenic 25.0%
!!! TACACTTTTTCTTTCTTTCT+TGG - chr6_4:19781688-19781707 Msa0981040:CDS 25.0%
! ATATATAATTGCAGGATGAT+TGG - chr6_4:19781731-19781750 Msa0981040:CDS 25.0%
! TATATAATTGCAGGATGATT+GGG - chr6_4:19781732-19781751 Msa0981040:CDS 25.0%
!! CTTCATTTTCCAATCTTTTA+AGG - chr6_4:19781803-19781822 Msa0981040:intron 25.0%
! AATAGCAATGGTTACATTTA+TGG - chr6_4:19782132-19782151 Msa0981040:CDS 25.0%
GAAATGTGAAGAATATTGGA+AGG + chr6_4:19780321-19780340 None:intergenic 30.0%
!! TCACTTTTGTTCACAACAAT+AGG + chr6_4:19780546-19780565 None:intergenic 30.0%
TAACTCTTTATCCGGATAAT+CGG + chr6_4:19780798-19780817 None:intergenic 30.0%
ATTATCCGGATAAAGAGTTA+TGG - chr6_4:19780798-19780817 Msa0981040:CDS 30.0%
GATTACCATAACTCTTTATC+CGG + chr6_4:19780806-19780825 None:intergenic 30.0%
GATAAAGAGTTATGGTAATC+CGG - chr6_4:19780806-19780825 Msa0981040:CDS 30.0%
! TTTTGTAGTGAAAGCTAAGA+TGG - chr6_4:19780888-19780907 Msa0981040:CDS 30.0%
TTTGTAGTGAAAGCTAAGAT+GGG - chr6_4:19780889-19780908 Msa0981040:CDS 30.0%
! TTTTCTTCATACCAACAAGT+TGG + chr6_4:19781047-19781066 None:intergenic 30.0%
ATGCATGAATTTAGATTGGA+TGG - chr6_4:19781120-19781139 Msa0981040:intron 30.0%
CAGTTTCAATTCAAGTACAA+TGG + chr6_4:19781376-19781395 None:intergenic 30.0%
ATATGAGTTTCTTTCTCATG+TGG - chr6_4:19781603-19781622 Msa0981040:CDS 30.0%
TGAACTCTATAGAAAGCAAA+AGG + chr6_4:19781649-19781668 None:intergenic 30.0%
CTCAATAGGTGATGATTTAT+TGG - chr6_4:19781831-19781850 Msa0981040:intron 30.0%
TCAATGGTATTGTTGCTAAA+AGG + chr6_4:19781889-19781908 None:intergenic 30.0%
! TTTGAAGTCATGATCATCAA+TGG + chr6_4:19781905-19781924 None:intergenic 30.0%
! ATTGATGATCATGACTTCAA+AGG - chr6_4:19781904-19781923 Msa0981040:intron 30.0%
!! CAATATCCATTTGATGATGA+AGG + chr6_4:19781943-19781962 None:intergenic 30.0%
TCATTGTTCATTAAGTAGCT+TGG + chr6_4:19781970-19781989 None:intergenic 30.0%
ACTAATCTCACCAATTTCAA+TGG - chr6_4:19781991-19782010 Msa0981040:CDS 30.0%
! CATTAATGGACCATTGAAAT+TGG + chr6_4:19782004-19782023 None:intergenic 30.0%
AATGTGCTTCTTTGCATTAA+TGG + chr6_4:19782018-19782037 None:intergenic 30.0%
GATAACATGTTCTCATTCAA+GGG + chr6_4:19782084-19782103 None:intergenic 30.0%
TGATAACATGTTCTCATTCA+AGG + chr6_4:19782085-19782104 None:intergenic 30.0%
AATCAAGGGAATAATAGCAA+TGG - chr6_4:19782120-19782139 Msa0981040:CDS 30.0%
CAATGGTTACATTTATGGAT+TGG - chr6_4:19782137-19782156 Msa0981040:CDS 30.0%
ATTCTCTACCAACAATTCTA+TGG - chr6_4:19782185-19782204 Msa0981040:five_prime_UTR 30.0%
! GTTGTTTCAAAGCAAGAAAT+TGG - chr6_4:19782264-19782283 Msa0981040:five_prime_UTR 30.0%
TTTCAAAGCAAGAAATTGGA+AGG - chr6_4:19782268-19782287 Msa0981040:five_prime_UTR 30.0%
AACATTGTATGAAGAACTTG+AGG - chr6_4:19782296-19782315 Msa0981040:five_prime_UTR 30.0%
ACATTGTATGAAGAACTTGA+GGG - chr6_4:19782297-19782316 Msa0981040:five_prime_UTR 30.0%
GAAATGTGAAGAATATTGGA+AGG + chr6_4:19780321-19780340 None:intergenic 30.0%
!! TCACTTTTGTTCACAACAAT+AGG + chr6_4:19780546-19780565 None:intergenic 30.0%
TAACTCTTTATCCGGATAAT+CGG + chr6_4:19780798-19780817 None:intergenic 30.0%
ATTATCCGGATAAAGAGTTA+TGG - chr6_4:19780798-19780817 Msa0981040:CDS 30.0%
GATTACCATAACTCTTTATC+CGG + chr6_4:19780806-19780825 None:intergenic 30.0%
GATAAAGAGTTATGGTAATC+CGG - chr6_4:19780806-19780825 Msa0981040:CDS 30.0%
! TTTTGTAGTGAAAGCTAAGA+TGG - chr6_4:19780888-19780907 Msa0981040:CDS 30.0%
TTTGTAGTGAAAGCTAAGAT+GGG - chr6_4:19780889-19780908 Msa0981040:CDS 30.0%
! TTTTCTTCATACCAACAAGT+TGG + chr6_4:19781047-19781066 None:intergenic 30.0%
ATGCATGAATTTAGATTGGA+TGG - chr6_4:19781120-19781139 Msa0981040:intron 30.0%
CAGTTTCAATTCAAGTACAA+TGG + chr6_4:19781376-19781395 None:intergenic 30.0%
ATATGAGTTTCTTTCTCATG+TGG - chr6_4:19781603-19781622 Msa0981040:CDS 30.0%
TGAACTCTATAGAAAGCAAA+AGG + chr6_4:19781649-19781668 None:intergenic 30.0%
CTCAATAGGTGATGATTTAT+TGG - chr6_4:19781831-19781850 Msa0981040:intron 30.0%
TCAATGGTATTGTTGCTAAA+AGG + chr6_4:19781889-19781908 None:intergenic 30.0%
! TTTGAAGTCATGATCATCAA+TGG + chr6_4:19781905-19781924 None:intergenic 30.0%
! ATTGATGATCATGACTTCAA+AGG - chr6_4:19781904-19781923 Msa0981040:intron 30.0%
!! CAATATCCATTTGATGATGA+AGG + chr6_4:19781943-19781962 None:intergenic 30.0%
TCATTGTTCATTAAGTAGCT+TGG + chr6_4:19781970-19781989 None:intergenic 30.0%
ACTAATCTCACCAATTTCAA+TGG - chr6_4:19781991-19782010 Msa0981040:CDS 30.0%
! CATTAATGGACCATTGAAAT+TGG + chr6_4:19782004-19782023 None:intergenic 30.0%
AATGTGCTTCTTTGCATTAA+TGG + chr6_4:19782018-19782037 None:intergenic 30.0%
GATAACATGTTCTCATTCAA+GGG + chr6_4:19782084-19782103 None:intergenic 30.0%
TGATAACATGTTCTCATTCA+AGG + chr6_4:19782085-19782104 None:intergenic 30.0%
AATCAAGGGAATAATAGCAA+TGG - chr6_4:19782120-19782139 Msa0981040:CDS 30.0%
CAATGGTTACATTTATGGAT+TGG - chr6_4:19782137-19782156 Msa0981040:CDS 30.0%
ATTCTCTACCAACAATTCTA+TGG - chr6_4:19782185-19782204 Msa0981040:five_prime_UTR 30.0%
! GTTGTTTCAAAGCAAGAAAT+TGG - chr6_4:19782264-19782283 Msa0981040:five_prime_UTR 30.0%
TTTCAAAGCAAGAAATTGGA+AGG - chr6_4:19782268-19782287 Msa0981040:five_prime_UTR 30.0%
AACATTGTATGAAGAACTTG+AGG - chr6_4:19782296-19782315 Msa0981040:five_prime_UTR 30.0%
ACATTGTATGAAGAACTTGA+GGG - chr6_4:19782297-19782316 Msa0981040:five_prime_UTR 30.0%
AACAATAGGTTCTTCCATGA+TGG + chr6_4:19780532-19780551 None:intergenic 35.0%
!! TTGGTGAAGCTGATTTGAAT+AGG - chr6_4:19780676-19780695 Msa0981040:CDS 35.0%
TACTTACTTGGTAAATCCCA+AGG + chr6_4:19780708-19780727 None:intergenic 35.0%
ATCTTAACTCTCCGATTATC+CGG - chr6_4:19780784-19780803 Msa0981040:CDS 35.0%
AGAGATAGGAAATATCCAAC+TGG - chr6_4:19780940-19780959 Msa0981040:intron 35.0%
! CTATTAGTTCTTGTTCCAGT+TGG + chr6_4:19780958-19780977 None:intergenic 35.0%
ACTAATAGAGCAACTGAATC+AGG - chr6_4:19780970-19780989 Msa0981040:intron 35.0%
AAGAGGAGAGAAAACCAATT+GGG - chr6_4:19781095-19781114 Msa0981040:intron 35.0%
AAATTCATGCATGACCCAAT+TGG + chr6_4:19781112-19781131 None:intergenic 35.0%
GGTCATGCATGAATTTAGAT+TGG - chr6_4:19781116-19781135 Msa0981040:intron 35.0%
AATTACAGTTGCAGTCGAAA+TGG + chr6_4:19781494-19781513 None:intergenic 35.0%
! AAAGCAAAAGGTGTGATGAA+GGG + chr6_4:19781637-19781656 None:intergenic 35.0%
TGAGTTCACCCTTAAAAGAT+TGG + chr6_4:19781815-19781834 None:intergenic 35.0%
!! CTTTTAAGGGTGAACTCAAT+AGG - chr6_4:19781817-19781836 Msa0981040:intron 35.0%
ATGGTATTGTTGCTAAAAGG+AGG + chr6_4:19781886-19781905 None:intergenic 35.0%
! GGAATTTGGATTTGAGTTTG+AGG + chr6_4:19782054-19782073 None:intergenic 35.0%
! GGAAAATAAAGAGTGCAAGA+TGG - chr6_4:19782158-19782177 Msa0981040:exon 35.0%
AATGCTCACCATAGAATTGT+TGG + chr6_4:19782196-19782215 None:intergenic 35.0%
CATGATTCAAGATTTGAGAG+GGG + chr6_4:19782339-19782358 None:intergenic 35.0%
CCATGATTCAAGATTTGAGA+GGG + chr6_4:19782340-19782359 None:intergenic 35.0%
CCTCTCAAATCTTGAATCAT+GGG - chr6_4:19782338-19782357 Msa0981040:five_prime_UTR 35.0%
CAAATCTTGAATCATGGGAA+TGG - chr6_4:19782343-19782362 Msa0981040:five_prime_UTR 35.0%
AACAATAGGTTCTTCCATGA+TGG + chr6_4:19780532-19780551 None:intergenic 35.0%
!! TTGGTGAAGCTGATTTGAAT+AGG - chr6_4:19780676-19780695 Msa0981040:CDS 35.0%
TACTTACTTGGTAAATCCCA+AGG + chr6_4:19780708-19780727 None:intergenic 35.0%
ATCTTAACTCTCCGATTATC+CGG - chr6_4:19780784-19780803 Msa0981040:CDS 35.0%
AGAGATAGGAAATATCCAAC+TGG - chr6_4:19780940-19780959 Msa0981040:intron 35.0%
! CTATTAGTTCTTGTTCCAGT+TGG + chr6_4:19780958-19780977 None:intergenic 35.0%
ACTAATAGAGCAACTGAATC+AGG - chr6_4:19780970-19780989 Msa0981040:intron 35.0%
AAGAGGAGAGAAAACCAATT+GGG - chr6_4:19781095-19781114 Msa0981040:intron 35.0%
AAATTCATGCATGACCCAAT+TGG + chr6_4:19781112-19781131 None:intergenic 35.0%
GGTCATGCATGAATTTAGAT+TGG - chr6_4:19781116-19781135 Msa0981040:intron 35.0%
AATTACAGTTGCAGTCGAAA+TGG + chr6_4:19781494-19781513 None:intergenic 35.0%
! AAAGCAAAAGGTGTGATGAA+GGG + chr6_4:19781637-19781656 None:intergenic 35.0%
TGAGTTCACCCTTAAAAGAT+TGG + chr6_4:19781815-19781834 None:intergenic 35.0%
!! CTTTTAAGGGTGAACTCAAT+AGG - chr6_4:19781817-19781836 Msa0981040:intron 35.0%
ATGGTATTGTTGCTAAAAGG+AGG + chr6_4:19781886-19781905 None:intergenic 35.0%
! GGAATTTGGATTTGAGTTTG+AGG + chr6_4:19782054-19782073 None:intergenic 35.0%
! GGAAAATAAAGAGTGCAAGA+TGG - chr6_4:19782158-19782177 Msa0981040:exon 35.0%
AATGCTCACCATAGAATTGT+TGG + chr6_4:19782196-19782215 None:intergenic 35.0%
CATGATTCAAGATTTGAGAG+GGG + chr6_4:19782339-19782358 None:intergenic 35.0%
CCATGATTCAAGATTTGAGA+GGG + chr6_4:19782340-19782359 None:intergenic 35.0%
CCTCTCAAATCTTGAATCAT+GGG - chr6_4:19782338-19782357 Msa0981040:five_prime_UTR 35.0%
CAAATCTTGAATCATGGGAA+TGG - chr6_4:19782343-19782362 Msa0981040:five_prime_UTR 35.0%
GTGAAGAATATTGGAAGGGA+AGG + chr6_4:19780316-19780335 None:intergenic 40.0%
ATTTGAATAGGTGTGAGCCT+TGG - chr6_4:19780688-19780707 Msa0981040:CDS 40.0%
TTTGAATAGGTGTGAGCCTT+GGG - chr6_4:19780689-19780708 Msa0981040:CDS 40.0%
CTAAGATGGGAGAGAAAGAT+TGG - chr6_4:19780902-19780921 Msa0981040:CDS 40.0%
GGGAAAAGTAACCAACTTGT+TGG - chr6_4:19781033-19781052 Msa0981040:intron 40.0%
TATAAAGGTAGAGCTCCAAG+AGG - chr6_4:19781078-19781097 Msa0981040:intron 40.0%
!!! CAATTGGTTTTCTCTCCTCT+TGG + chr6_4:19781096-19781115 None:intergenic 40.0%
CAAGAGGAGAGAAAACCAAT+TGG - chr6_4:19781094-19781113 Msa0981040:intron 40.0%
TAGCAACTTGCAATCTTCCT+AGG - chr6_4:19781148-19781167 Msa0981040:intron 40.0%
AGCAACTTGCAATCTTCCTA+GGG - chr6_4:19781149-19781168 Msa0981040:intron 40.0%
! GAAAGCAAAAGGTGTGATGA+AGG + chr6_4:19781638-19781657 None:intergenic 40.0%
!! CCATTTGATGATGAAGGTGA+TGG + chr6_4:19781937-19781956 None:intergenic 40.0%
CCATCACCTTCATCATCAAA+TGG - chr6_4:19781934-19781953 Msa0981040:intron 40.0%
! TCAAGGGTGTGTTTGGAATT+TGG + chr6_4:19782068-19782087 None:intergenic 40.0%
! TTCTCATTCAAGGGTGTGTT+TGG + chr6_4:19782075-19782094 None:intergenic 40.0%
CCCTCTCAAATCTTGAATCA+TGG - chr6_4:19782337-19782356 Msa0981040:five_prime_UTR 40.0%
CCCATGATTCAAGATTTGAG+AGG + chr6_4:19782341-19782360 None:intergenic 40.0%
GTGAAGAATATTGGAAGGGA+AGG + chr6_4:19780316-19780335 None:intergenic 40.0%
ATTTGAATAGGTGTGAGCCT+TGG - chr6_4:19780688-19780707 Msa0981040:CDS 40.0%
TTTGAATAGGTGTGAGCCTT+GGG - chr6_4:19780689-19780708 Msa0981040:CDS 40.0%
CTAAGATGGGAGAGAAAGAT+TGG - chr6_4:19780902-19780921 Msa0981040:CDS 40.0%
GGGAAAAGTAACCAACTTGT+TGG - chr6_4:19781033-19781052 Msa0981040:intron 40.0%
TATAAAGGTAGAGCTCCAAG+AGG - chr6_4:19781078-19781097 Msa0981040:intron 40.0%
!!! CAATTGGTTTTCTCTCCTCT+TGG + chr6_4:19781096-19781115 None:intergenic 40.0%
CAAGAGGAGAGAAAACCAAT+TGG - chr6_4:19781094-19781113 Msa0981040:intron 40.0%
TAGCAACTTGCAATCTTCCT+AGG - chr6_4:19781148-19781167 Msa0981040:intron 40.0%
AGCAACTTGCAATCTTCCTA+GGG - chr6_4:19781149-19781168 Msa0981040:intron 40.0%
! GAAAGCAAAAGGTGTGATGA+AGG + chr6_4:19781638-19781657 None:intergenic 40.0%
!! CCATTTGATGATGAAGGTGA+TGG + chr6_4:19781937-19781956 None:intergenic 40.0%
CCATCACCTTCATCATCAAA+TGG - chr6_4:19781934-19781953 Msa0981040:intron 40.0%
! TCAAGGGTGTGTTTGGAATT+TGG + chr6_4:19782068-19782087 None:intergenic 40.0%
! TTCTCATTCAAGGGTGTGTT+TGG + chr6_4:19782075-19782094 None:intergenic 40.0%
CCCTCTCAAATCTTGAATCA+TGG - chr6_4:19782337-19782356 Msa0981040:five_prime_UTR 40.0%
CCCATGATTCAAGATTTGAG+AGG + chr6_4:19782341-19782360 None:intergenic 40.0%
AAACCAGCAGGCAAATCAAG+AGG + chr6_4:19780573-19780592 None:intergenic 45.0%
GAGCAACTGAATCAGGCTAT+TGG - chr6_4:19780977-19780996 Msa0981040:intron 45.0%
TCAGGCTATTGGAAAGCAAC+TGG - chr6_4:19780988-19781007 Msa0981040:intron 45.0%
CAATCTTCCTAGGGATGCAA+AGG - chr6_4:19781158-19781177 Msa0981040:intron 45.0%
AAGGTGTGATGAAGGGAGAA+AGG + chr6_4:19781630-19781649 None:intergenic 45.0%
! GGATGATTGGGTTGTGTCAA+AGG - chr6_4:19781744-19781763 Msa0981040:CDS 45.0%
TTCTTCACTTCCACCTCTTG+TGG - chr6_4:19781858-19781877 Msa0981040:intron 45.0%
CTAAAAGGAGGATCCACAAG+AGG + chr6_4:19781874-19781893 None:intergenic 45.0%
CTTGAGGGACCTTCATCAAT+TGG - chr6_4:19782312-19782331 Msa0981040:five_prime_UTR 45.0%
AAACCAGCAGGCAAATCAAG+AGG + chr6_4:19780573-19780592 None:intergenic 45.0%
GAGCAACTGAATCAGGCTAT+TGG - chr6_4:19780977-19780996 Msa0981040:intron 45.0%
TCAGGCTATTGGAAAGCAAC+TGG - chr6_4:19780988-19781007 Msa0981040:intron 45.0%
CAATCTTCCTAGGGATGCAA+AGG - chr6_4:19781158-19781177 Msa0981040:intron 45.0%
AAGGTGTGATGAAGGGAGAA+AGG + chr6_4:19781630-19781649 None:intergenic 45.0%
! GGATGATTGGGTTGTGTCAA+AGG - chr6_4:19781744-19781763 Msa0981040:CDS 45.0%
TTCTTCACTTCCACCTCTTG+TGG - chr6_4:19781858-19781877 Msa0981040:intron 45.0%
CTAAAAGGAGGATCCACAAG+AGG + chr6_4:19781874-19781893 None:intergenic 45.0%
CTTGAGGGACCTTCATCAAT+TGG - chr6_4:19782312-19782331 Msa0981040:five_prime_UTR 45.0%
!! TATAGTATAATAATATAATA+TGG + chr6_4:19780494-19780513 None:intergenic 5.0%
!! TATAGTATAATAATATAATA+TGG + chr6_4:19780494-19780513 None:intergenic 5.0%
!! GAACCTCTTGATTTGCCTGC+TGG - chr6_4:19780567-19780586 Msa0981040:CDS 50.0%
! GGGTGAAATCTGAAACCAGC+AGG + chr6_4:19780585-19780604 None:intergenic 50.0%
AAAGGAGGATCCACAAGAGG+TGG + chr6_4:19781871-19781890 None:intergenic 50.0%
GAGAGGGGACCAATTGATGA+AGG + chr6_4:19782324-19782343 None:intergenic 50.0%
!! GAACCTCTTGATTTGCCTGC+TGG - chr6_4:19780567-19780586 Msa0981040:CDS 50.0%
! GGGTGAAATCTGAAACCAGC+AGG + chr6_4:19780585-19780604 None:intergenic 50.0%
AAAGGAGGATCCACAAGAGG+TGG + chr6_4:19781871-19781890 None:intergenic 50.0%
GAGAGGGGACCAATTGATGA+AGG + chr6_4:19782324-19782343 None:intergenic 50.0%
!! GAGGGTACCTTTGCATCCCT+AGG + chr6_4:19781168-19781187 None:intergenic 55.0%
!! GAGGGTACCTTTGCATCCCT+AGG + chr6_4:19781168-19781187 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 19780313 19782380 19780313 ID=Msa0981040;Name=Msa0981040
chr6_4 mRNA 19780313 19782380 19780313 ID=Msa0981040-mRNA-1;Parent=Msa0981040;Name=Msa0981040-mRNA-1;_AED=0.01;_eAED=0.02;_QI=221|1|0.66|1|1|1|3|0|368
chr6_4 exon 19780313 19780948 19780313 ID=Msa0981040-mRNA-1:exon:6155;Parent=Msa0981040-mRNA-1
chr6_4 exon 19781514 19781797 19781514 ID=Msa0981040-mRNA-1:exon:6154;Parent=Msa0981040-mRNA-1
chr6_4 exon 19781973 19782380 19781973 ID=Msa0981040-mRNA-1:exon:6153;Parent=Msa0981040-mRNA-1
chr6_4 five_prime_UTR 19782160 19782380 19782160 ID=Msa0981040-mRNA-1:five_prime_utr;Parent=Msa0981040-mRNA-1
chr6_4 CDS 19781973 19782159 19781973 ID=Msa0981040-mRNA-1:cds;Parent=Msa0981040-mRNA-1
chr6_4 CDS 19781514 19781797 19781514 ID=Msa0981040-mRNA-1:cds;Parent=Msa0981040-mRNA-1
chr6_4 CDS 19780313 19780948 19780313 ID=Msa0981040-mRNA-1:cds;Parent=Msa0981040-mRNA-1
Gene Sequence

>Msa0981040

ATGGAAGAACCTATTGTTGTGAACAAAAGTGATGAACCTCTTGATTTGCCTGCTGGTTTCAGATTTCACCCTAATGATGATGAAATCATTACTTTTTATTTGCTTAAGAAGGTATTGAATAGTAATTTTAGTGCAATTGCAATTGGTGAAGCTGATTTGAATAGGTGTGAGCCTTGGGATTTACCAATGAAAGCTAAGATGGGAGAGAAAGATTGGTATTTCTTTTGTCAAAGAGATAGGAAATATCCAACTGGAACAAGAACTAATAGAGCAACTGAATCAGGCTATTGGAAAGCAACTGGAAAAGATAAAGAGATCTACAAAGGGAAAAGTAACCAACTTGTTGGTATGAAGAAAACTCTTGTGTTCTATAAAGGTAGAGCTCCAAGAGGAGAGAAAACCAATTGGGTCATGCATGAATTTAGATTGGATGGAACATTAGCAACTTGCAATCTTCCTAGGGATGCAAAGGATGATTGGGTTGTGTCAAAGGTTTTCATCAAGAACAACATTGAAGTTAAAAAAACTACTTCATTTTCCAATCTTTTAAGGGTGAACTCAATAGGTGATGATTTATTGGATTTTTCTTCACTTCCACCTCTTGTGGATCCTCCTTTTAGCAACAATACCATTGATGATCATGACTTCAAAGGAATCAATCCATCACCTTCATCATCAAATGGATATTGTTTTCCAAGCTACTTAATGAACAATGAAACTAATCTCACCAATTTCAATGGTCCATTAATGCAAAGAAGCACATTTTCATCACATCAACCTCAAACTCAAATCCAAATTCCAAACACACCCTTGAATGAGAACATGTTATCAAATTATTCATACATGAATCAAGGGAATAATAGCAATGGTTACATTTATGGATTGGAAAATAAAGAGTGCAAGATGGAGCAATTCTCTACCAACAATTCTATGGTGAGCATTTCACAAGACACATGTTTGAGCAATGACATAAACAATGAGACATCATCTGTTGTTTCAAAGCAAGAAATTGGAAGGAATGCAACATTGTATGAAGAACTTGAGGGACCTTCATCAATTGGTCCCCTCTCAAATCTTGAATCATGGGAATGGCTATTGAAGAGTTAA
Protein sequence

>Msa0981040

MEEPIVVNKSDEPLDLPAGFRFHPNDDEIITFYLLKKVLNSNFSAIAIGEADLNRCEPWDLPMKAKMGEKDWYFFCQRDRKYPTGTRTNRATESGYWKATGKDKEIYKGKSNQLVGMKKTLVFYKGRAPRGEKTNWVMHEFRLDGTLATCNLPRDAKDDWVVSKVFIKNNIEVKKTTSFSNLLRVNSIGDDLLDFSSLPPLVDPPFSNNTIDDHDFKGINPSPSSSNGYCFPSYLMNNETNLTNFNGPLMQRSTFSSHQPQTQIQIPNTPLNENMLSNYSYMNQGNNSNGYIYGLENKECKMEQFSTNNSMVSISQDTCLSNDINNETSSVVSKQEIGRNATLYEELEGPSSIGPLSNLESWEWLLKS*