AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0944790

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0944790 MtrunA17_Chr6g0461661 92.819 376 18 1 2 368 4 379 0.0 709
Msa0944790 MtrunA17_Chr7g0253011 58.853 401 110 15 1 364 1 383 4.55e-138 398
Msa0944790 MtrunA17_Chr4g0060931 50.146 343 147 11 5 339 6 332 5.11e-100 300
Msa0944790 MtrunA17_Chr3g0091921 61.792 212 75 5 1 211 1 207 1.69e-88 269
Msa0944790 MtrunA17_Chr6g0453451 61.576 203 68 4 9 210 13 206 3.02e-84 258
Msa0944790 MtrunA17_Chr2g0316971 72.258 155 43 0 16 170 23 177 2.59e-82 256
Msa0944790 MtrunA17_Chr1g0147421 63.743 171 57 2 16 185 27 193 2.58e-73 232
Msa0944790 MtrunA17_Chr7g0217721 47.761 268 113 6 11 255 14 277 7.17e-71 225
Msa0944790 MtrunA17_Chr6g0484441 64.286 168 51 4 15 180 4 164 4.66e-70 222
Msa0944790 MtrunA17_Chr3g0139331 46.559 247 108 4 16 253 11 242 2.82e-68 218
Msa0944790 MtrunA17_Chr7g0217711 66.434 143 45 2 11 152 14 154 9.95e-65 203
Msa0944790 MtrunA17_Chr3g0144271 71.318 129 36 1 16 143 23 151 3.03e-63 207
Msa0944790 MtrunA17_Chr2g0312321 53.191 188 76 5 16 203 11 186 1.55e-60 197
Msa0944790 MtrunA17_Chr1g0183741 53.503 157 67 2 16 172 10 160 3.35e-55 182
Msa0944790 MtrunA17_Chr2g0309331 53.750 160 66 3 14 170 8 162 4.61e-54 181
Msa0944790 MtrunA17_Chr4g0017921 54.375 160 61 4 16 171 8 159 5.36e-53 179
Msa0944790 MtrunA17_Chr7g0261411 54.305 151 63 2 16 166 10 154 7.89e-53 176
Msa0944790 MtrunA17_Chr8g0372121 51.220 164 71 4 16 176 6 163 8.79e-53 177
Msa0944790 MtrunA17_Chr8g0359921 51.190 168 80 1 14 181 12 177 9.56e-53 177
Msa0944790 MtrunA17_Chr2g0309891 50.299 167 77 4 13 177 3 165 1.31e-52 177
Msa0944790 MtrunA17_Chr4g0056541 49.701 167 75 3 16 179 7 167 1.57e-52 178
Msa0944790 MtrunA17_Chr2g0318101 46.961 181 86 3 1 172 1 180 1.67e-52 177
Msa0944790 MtrunA17_Chr5g0417791 50.000 160 76 2 14 171 1 158 1.68e-52 175
Msa0944790 MtrunA17_Chr4g0047841 47.727 176 71 2 16 170 15 190 4.11e-52 176
Msa0944790 MtrunA17_Chr7g0252971 47.486 179 83 4 15 183 7 184 4.55e-52 176
Msa0944790 MtrunA17_Chr8g0346001 50.303 165 70 4 16 170 15 177 4.31e-51 176
Msa0944790 MtrunA17_Chr6g0481091 46.328 177 87 4 13 185 3 175 5.43e-51 170
Msa0944790 MtrunA17_Chr5g0405211 48.795 166 76 4 16 178 8 167 5.88e-51 173
Msa0944790 MtrunA17_Chr3g0109821 51.235 162 72 4 13 171 3 160 6.26e-51 180
Msa0944790 MtrunA17_Chr3g0124761 50.581 172 76 4 14 181 5 171 7.17e-51 171
Msa0944790 MtrunA17_Chr8g0361731 38.039 255 135 5 1 234 1 253 8.17e-51 174
Msa0944790 MtrunA17_Chr3g0113001 40.647 278 139 6 61 332 10 267 1.13e-50 171
Msa0944790 MtrunA17_Chr5g0433781 49.398 166 78 3 13 176 3 164 1.78e-50 178
Msa0944790 MtrunA17_Chr4g0018391 50.000 156 69 3 16 168 7 156 2.45e-50 172
Msa0944790 MtrunA17_Chr2g0318081 46.829 205 91 5 14 206 14 212 4.52e-50 171
Msa0944790 MtrunA17_Chr5g0398971 51.266 158 66 5 16 168 7 158 1.89e-49 169
Msa0944790 MtrunA17_Chr7g0263931 51.299 154 73 2 14 165 9 162 5.19e-49 167
Msa0944790 MtrunA17_Chr8g0384721 50.307 163 64 3 14 168 5 158 5.76e-49 166
Msa0944790 MtrunA17_Chr5g0417001 45.161 186 94 3 1 180 1 184 1.19e-48 168
Msa0944790 MtrunA17_Chr4g0042561 47.799 159 79 2 15 171 8 164 1.49e-48 165
Msa0944790 MtrunA17_Chr3g0130731 48.193 166 82 2 14 178 5 167 6.27e-48 164
Msa0944790 MtrunA17_Chr7g0214071 47.619 168 80 4 1 168 1 160 7.97e-48 162
Msa0944790 MtrunA17_Chr6g0453131 45.029 171 83 3 7 170 9 175 2.10e-47 165
Msa0944790 MtrunA17_Chr1g0200561 47.436 156 73 3 16 168 19 168 2.80e-47 164
Msa0944790 MtrunA17_Chr2g0326361 48.750 160 80 2 8 165 6 165 2.93e-47 163
Msa0944790 MtrunA17_Chr1g0201021 44.175 206 102 7 19 217 22 221 7.34e-47 167
Msa0944790 MtrunA17_Chr5g0428991 48.148 162 68 4 16 170 25 177 2.15e-44 162
Msa0944790 MtrunA17_Chr5g0400461 48.684 152 63 3 16 152 6 157 2.24e-44 155
Msa0944790 MtrunA17_Chr3g0128151 47.753 178 69 5 16 178 22 190 3.58e-44 160
Msa0944790 MtrunA17_Chr4g0054791 44.509 173 85 4 12 178 2 169 4.79e-43 152
Msa0944790 MtrunA17_Chr2g0311661 42.268 194 97 6 1 182 9 199 2.32e-42 149
Msa0944790 MtrunA17_Chr2g0311651 43.590 195 91 9 1 182 9 197 2.35e-42 150
Msa0944790 MtrunA17_Chr3g0130101 48.366 153 71 4 19 168 10 157 3.06e-42 150
Msa0944790 MtrunA17_Chr5g0442771 51.825 137 64 2 8 143 11 146 3.57e-42 149
Msa0944790 MtrunA17_Chr8g0364791 47.436 156 74 4 16 168 6 156 2.62e-41 150
Msa0944790 MtrunA17_Chr1g0197351 40.191 209 108 5 16 214 42 243 3.55e-41 150
Msa0944790 MtrunA17_Chr1g0197361 49.045 157 66 6 19 169 11 159 3.61e-41 152
Msa0944790 MtrunA17_Chr4g0076731 52.800 125 58 1 19 143 57 180 3.67e-41 149
Msa0944790 MtrunA17_Chr3g0092671 49.367 158 66 6 19 170 8 157 1.67e-40 150
Msa0944790 MtrunA17_Chr3g0128111 46.104 154 77 3 19 170 45 194 2.70e-40 142
Msa0944790 MtrunA17_Chr4g0038751 44.172 163 82 4 7 168 7 161 3.37e-40 144
Msa0944790 MtrunA17_Chr3g0113031 36.897 290 157 8 79 364 3 270 9.80e-40 142
Msa0944790 MtrunA17_Chr8g0384201 46.154 156 76 4 16 168 6 156 2.52e-39 145
Msa0944790 MtrunA17_Chr8g0345671 48.092 131 64 3 15 142 10 139 2.62e-35 133
Msa0944790 MtrunA17_Chr8g0385991 37.821 156 92 2 16 168 14 167 1.34e-34 127
Msa0944790 MtrunA17_Chr3g0131911 37.000 200 99 6 16 191 14 210 2.95e-34 126
Msa0944790 MtrunA17_Chr8g0345691 46.154 130 66 3 16 142 12 140 1.35e-32 126
Msa0944790 MtrunA17_Chr8g0345711 43.846 130 69 3 16 142 12 140 1.67e-31 117
Msa0944790 MtrunA17_Chr2g0321741 43.750 128 65 3 35 157 11 136 5.30e-31 120
Msa0944790 MtrunA17_Chr4g0026141 42.537 134 67 4 16 142 5 135 5.44e-29 113
Msa0944790 MtrunA17_Chr2g0321631 40.299 134 73 3 15 142 3 135 2.67e-28 110
Msa0944790 MtrunA17_Chr8g0345731 41.353 133 71 5 16 142 24 155 3.20e-27 105
Msa0944790 MtrunA17_Chr8g0345701 40.972 144 65 5 16 142 7 147 2.93e-26 103
Msa0944790 MtrunA17_Chr4g0050701 37.500 128 72 1 16 143 11 130 3.20e-24 98.2
Msa0944790 MtrunA17_Chr7g0266701 38.060 134 76 4 15 142 3 135 4.05e-24 99.8
Msa0944790 MtrunA17_Chr7g0243371 51.282 78 38 0 69 146 17 94 4.23e-24 95.9
Msa0944790 MtrunA17_Chr8g0345721 33.533 167 77 4 13 147 32 196 1.15e-23 97.4
Msa0944790 MtrunA17_Chr8g0345741 39.316 117 66 3 30 142 4 119 8.65e-23 93.6
Msa0944790 MtrunA17_Chr7g0251661 35.821 134 80 4 10 141 4 133 1.05e-19 85.1
Msa0944790 MtrunA17_Chr8g0384351 34.591 159 80 5 10 168 4 138 7.77e-18 80.5
Msa0944790 MtrunA17_Chr7g0251651 33.571 140 86 5 10 147 12 146 1.70e-17 80.1
Msa0944790 MtrunA17_Chr7g0251671 34.109 129 79 4 15 141 9 133 6.53e-17 77.4
Msa0944790 MtrunA17_Chr3g0113011 57.692 52 22 0 11 62 14 65 6.79e-17 74.7
Msa0944790 MtrunA17_Chr4g0046431 32.864 213 103 10 16 201 68 267 1.43e-16 79.7
Msa0944790 MtrunA17_Chr3g0130321 30.337 178 103 7 16 181 7 175 3.04e-15 73.9
Msa0944790 MtrunA17_Chr3g0113041 53.846 52 24 0 11 62 14 65 7.00e-15 68.9
Msa0944790 MtrunA17_Chr7g0274971 28.977 176 106 7 22 189 11 175 1.16e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0944790 AT5G18270.2 51.420 352 112 11 1 338 5 311 4.31e-107 318
Msa0944790 AT5G18270.1 51.136 352 113 11 1 338 5 311 7.10e-107 317
Msa0944790 AT3G04060.1 46.900 371 157 8 2 368 4 338 3.48e-99 298
Msa0944790 AT5G07680.1 46.448 366 148 12 5 364 6 329 4.85e-92 279
Msa0944790 AT5G07680.2 47.059 357 141 12 14 364 1 315 5.87e-91 276
Msa0944790 AT5G61430.1 44.892 372 145 13 1 356 1 328 2.31e-89 272
Msa0944790 AT3G29035.1 49.495 297 121 7 12 290 20 305 8.59e-83 255
Msa0944790 AT5G39610.1 70.303 165 47 1 5 169 9 171 1.76e-81 250
Msa0944790 AT3G15170.1 55.660 212 86 2 11 215 16 226 2.15e-77 241
Msa0944790 AT5G53950.1 67.949 156 50 0 16 171 17 172 2.61e-77 243
Msa0944790 AT1G76420.1 64.103 156 47 2 16 168 22 171 1.82e-69 221
Msa0944790 AT3G18400.1 63.750 160 53 2 15 174 4 158 3.52e-69 220
Msa0944790 AT2G24430.2 58.333 168 67 1 1 168 1 165 1.21e-67 216
Msa0944790 AT2G24430.1 58.333 168 67 1 1 168 1 165 1.21e-67 216
Msa0944790 AT1G56010.2 49.761 209 88 5 16 216 19 218 1.26e-62 203
Msa0944790 AT3G12977.1 54.487 156 68 2 15 170 17 169 2.52e-61 198
Msa0944790 AT5G61430.2 41.883 308 119 13 65 356 2 265 1.69e-59 194
Msa0944790 AT4G10350.1 52.830 159 68 3 16 171 9 163 5.46e-54 181
Msa0944790 AT1G33280.1 52.830 159 65 3 16 171 8 159 2.13e-53 179
Msa0944790 AT3G17730.1 50.932 161 73 3 13 171 3 159 9.67e-53 175
Msa0944790 AT4G27410.2 40.741 243 116 5 14 234 12 248 4.19e-52 175
Msa0944790 AT1G12260.2 49.701 167 75 3 16 179 7 167 9.27e-52 176
Msa0944790 AT1G12260.1 49.708 171 69 5 16 179 7 167 9.88e-52 177
Msa0944790 AT5G08790.1 50.602 166 64 3 14 170 5 161 1.05e-51 174
Msa0944790 AT3G61910.1 47.953 171 71 4 16 171 11 178 1.80e-51 175
Msa0944790 AT3G03200.1 51.829 164 74 3 13 174 3 163 2.37e-51 178
Msa0944790 AT4G36160.2 48.795 166 76 4 6 168 4 163 3.15e-51 175
Msa0944790 AT1G61110.1 50.909 165 70 3 16 170 16 179 3.57e-51 174
Msa0944790 AT2G46770.1 47.368 171 74 4 16 172 16 184 5.38e-51 174
Msa0944790 AT4G36160.1 47.727 176 81 5 11 181 5 174 5.75e-51 174
Msa0944790 AT4G36160.3 47.727 176 81 5 11 181 5 174 5.75e-51 174
Msa0944790 AT1G77450.1 48.603 179 84 3 9 184 3 176 6.88e-51 171
Msa0944790 AT4G28530.1 44.240 217 90 6 16 209 10 218 1.08e-50 173
Msa0944790 AT3G04070.2 50.000 166 75 4 16 173 10 175 1.35e-50 172
Msa0944790 AT2G18060.3 47.929 169 79 4 12 177 5 167 2.71e-50 172
Msa0944790 AT2G18060.1 47.929 169 79 4 12 177 5 167 2.71e-50 172
Msa0944790 AT1G79580.3 50.625 160 70 3 14 170 15 168 3.03e-50 172
Msa0944790 AT1G79580.5 50.625 160 70 3 14 170 15 168 3.03e-50 172
Msa0944790 AT1G79580.4 50.625 160 70 3 14 170 15 168 3.03e-50 172
Msa0944790 AT1G79580.2 50.625 160 70 3 14 170 15 168 3.03e-50 172
Msa0944790 AT1G79580.1 50.625 160 70 3 14 170 15 168 3.03e-50 172
Msa0944790 AT5G63790.1 51.266 158 71 2 14 168 48 202 3.61e-50 171
Msa0944790 AT5G63790.2 51.266 158 71 2 14 168 58 212 3.71e-50 171
Msa0944790 AT5G17260.1 50.610 164 76 3 13 174 3 163 5.92e-50 174
Msa0944790 AT5G04410.1 53.503 157 65 4 16 169 9 160 6.04e-50 176
Msa0944790 AT1G62700.1 51.282 156 67 3 16 168 7 156 9.36e-50 172
Msa0944790 AT1G62700.2 51.282 156 67 3 16 168 7 156 9.36e-50 172
Msa0944790 AT1G01720.1 48.193 166 81 2 12 175 3 165 1.49e-49 168
Msa0944790 AT1G65910.1 48.447 161 77 3 13 171 3 159 3.72e-49 175
Msa0944790 AT1G71930.2 49.682 157 68 5 16 168 9 158 3.98e-49 168
Msa0944790 AT1G71930.1 49.682 157 68 5 16 168 9 158 3.98e-49 168
Msa0944790 AT1G32770.1 47.619 168 75 3 16 172 16 181 6.06e-49 169
Msa0944790 AT1G26870.1 45.349 172 87 1 16 180 16 187 1.09e-48 169
Msa0944790 AT1G69490.1 50.000 156 74 3 16 169 9 162 1.25e-48 165
Msa0944790 AT3G10500.1 52.229 157 67 4 16 169 9 160 1.49e-48 172
Msa0944790 AT3G04070.1 45.604 182 75 4 16 173 10 191 1.67e-48 167
Msa0944790 AT5G39820.1 53.521 142 64 2 2 143 8 147 1.70e-48 167
Msa0944790 AT5G62380.2 50.641 156 68 4 16 168 7 156 2.60e-48 167
Msa0944790 AT5G62380.1 50.641 156 68 4 16 168 7 156 2.60e-48 167
Msa0944790 AT5G13180.1 50.323 155 71 2 14 168 12 160 3.93e-48 163
Msa0944790 AT3G15500.1 48.538 171 80 4 14 183 12 175 3.97e-48 166
Msa0944790 AT3G15510.1 46.875 160 76 2 20 170 21 180 5.52e-48 166
Msa0944790 AT5G66300.1 46.012 163 80 3 11 170 7 164 5.97e-48 164
Msa0944790 AT1G52890.1 50.000 164 76 3 14 176 12 170 7.57e-48 165
Msa0944790 AT4G27410.3 38.077 260 116 6 14 234 12 265 1.02e-47 164
Msa0944790 AT3G10480.1 53.125 160 66 4 16 171 27 181 1.64e-47 167
Msa0944790 AT5G46590.1 49.080 163 73 4 16 173 6 163 1.90e-47 163
Msa0944790 AT3G10480.2 52.532 158 69 3 16 171 27 180 3.30e-47 166
Msa0944790 AT3G10490.1 51.875 160 68 4 16 171 27 181 4.59e-47 160
Msa0944790 AT5G46590.2 49.032 155 73 3 16 165 6 159 1.41e-46 160
Msa0944790 AT1G54330.1 49.091 165 74 4 13 175 3 159 2.92e-46 160
Msa0944790 AT3G10490.2 51.875 160 68 4 16 171 27 181 5.06e-46 163
Msa0944790 AT1G33060.1 55.797 138 52 3 16 146 24 159 9.82e-46 166
Msa0944790 AT1G33060.2 55.797 138 52 3 16 146 24 159 1.03e-45 166
Msa0944790 AT4G35580.1 55.072 138 53 3 16 146 9 144 4.10e-45 162
Msa0944790 AT4G35580.3 55.072 138 53 3 16 146 9 144 5.60e-45 162
Msa0944790 AT4G35580.2 55.072 138 53 3 16 146 9 144 6.17e-45 162
Msa0944790 AT4G17980.1 53.077 130 59 1 16 143 6 135 6.55e-45 155
Msa0944790 AT5G24590.2 38.961 231 117 7 16 232 13 233 1.14e-44 160
Msa0944790 AT4G17980.2 53.077 130 59 1 16 143 6 135 1.16e-44 155
Msa0944790 AT3G49530.2 45.238 168 87 3 16 181 13 177 3.86e-44 157
Msa0944790 AT2G27300.1 48.252 143 67 3 19 156 17 157 6.39e-44 155
Msa0944790 AT2G33480.2 49.068 161 61 4 14 168 13 158 6.47e-44 153
Msa0944790 AT5G64060.1 42.262 168 89 4 16 180 6 168 7.26e-44 155
Msa0944790 AT2G33480.1 49.686 159 65 4 14 168 13 160 7.75e-44 153
Msa0944790 AT2G17040.1 46.795 156 74 4 14 168 5 152 1.05e-43 152
Msa0944790 AT3G49530.1 53.488 129 57 2 16 142 13 140 1.33e-43 157
Msa0944790 AT2G02450.1 53.600 125 57 1 19 143 54 177 3.35e-43 154
Msa0944790 AT2G43000.1 37.768 233 133 4 19 245 21 247 4.14e-43 151
Msa0944790 AT2G02450.2 53.600 125 57 1 19 143 54 177 5.12e-43 154
Msa0944790 AT1G56010.1 50.314 159 63 4 65 216 2 151 5.34e-42 147
Msa0944790 AT3G10480.3 42.424 198 62 4 16 171 27 214 2.76e-41 152
Msa0944790 AT5G09330.5 45.860 157 77 4 16 169 6 157 5.74e-41 150
Msa0944790 AT5G09330.2 45.860 157 77 4 16 169 6 157 5.74e-41 150
Msa0944790 AT5G09330.4 45.860 157 77 4 16 169 6 157 5.74e-41 150
Msa0944790 AT5G09330.3 45.860 157 77 4 16 169 6 157 5.74e-41 150
Msa0944790 AT5G09330.1 45.860 157 77 4 16 169 6 157 5.74e-41 150
Msa0944790 AT1G32510.1 41.053 190 98 4 16 195 6 191 1.25e-40 145
Msa0944790 AT1G34180.3 45.806 155 74 5 19 169 19 167 1.87e-40 148
Msa0944790 AT1G34190.1 45.806 155 74 5 19 169 19 167 2.61e-40 150
Msa0944790 AT1G52880.1 46.541 159 77 3 20 170 21 179 3.99e-40 144
Msa0944790 AT1G34180.1 45.806 155 74 5 19 169 19 167 5.88e-40 149
Msa0944790 AT3G12910.1 51.471 136 61 4 11 143 17 150 2.60e-39 142
Msa0944790 AT3G12977.2 46.980 149 72 4 65 209 14 159 4.31e-39 139
Msa0944790 AT1G34180.4 42.515 167 74 5 19 169 19 179 1.27e-38 144
Msa0944790 AT1G34180.2 42.515 167 74 5 19 169 19 179 4.56e-38 144
Msa0944790 AT1G32870.3 47.059 170 82 5 3 169 33 197 6.09e-38 143
Msa0944790 AT1G32870.2 48.408 157 73 5 16 169 10 161 1.12e-37 142
Msa0944790 AT1G32870.1 48.408 157 73 5 16 169 10 161 1.24e-37 142
Msa0944790 AT5G22290.1 42.657 143 74 3 19 155 24 164 2.08e-37 138
Msa0944790 AT3G44290.2 43.056 144 75 3 19 157 17 158 6.08e-37 133
Msa0944790 AT3G44290.1 43.056 144 75 3 19 157 17 158 2.40e-36 135
Msa0944790 AT5G04395.1 44.366 142 65 2 16 143 28 169 1.33e-34 126
Msa0944790 AT4G10350.2 53.509 114 46 3 61 171 7 116 1.83e-34 129
Msa0944790 AT4G28530.2 46.094 128 53 1 16 127 10 137 3.31e-30 118
Msa0944790 AT2G33480.3 53.000 100 43 2 69 168 8 103 1.35e-27 108
Msa0944790 AT1G02230.1 38.542 192 95 9 17 203 4 177 1.73e-27 111
Msa0944790 AT4G01550.1 40.000 155 82 6 18 168 6 153 3.28e-27 112
Msa0944790 AT3G44350.2 33.540 161 100 4 15 170 4 162 5.58e-26 104
Msa0944790 AT3G44350.1 37.423 163 87 6 15 168 4 160 2.12e-25 100
Msa0944790 AT5G22380.1 33.750 160 97 5 15 167 4 161 2.40e-25 103
Msa0944790 AT1G02250.1 40.458 131 70 4 17 142 4 131 3.42e-24 102
Msa0944790 AT3G04420.2 39.535 129 72 3 17 141 4 130 1.35e-23 99.8
Msa0944790 AT4G01520.1 38.608 158 85 7 17 169 5 155 1.54e-23 99.8
Msa0944790 AT3G04420.1 39.535 129 72 3 17 141 4 130 5.40e-23 99.0
Msa0944790 AT4G01540.4 39.355 155 82 7 19 168 7 154 1.15e-22 98.6
Msa0944790 AT4G01540.3 39.103 156 83 7 19 169 7 155 1.28e-22 99.0
Msa0944790 AT5G64530.2 36.154 130 71 2 14 143 1 118 1.43e-22 93.2
Msa0944790 AT4G01540.2 39.474 152 80 7 19 165 7 151 1.72e-22 98.6
Msa0944790 AT4G01540.1 39.355 155 82 7 19 168 7 154 1.80e-22 99.0
Msa0944790 AT5G64530.1 36.154 130 71 2 14 143 1 118 2.63e-22 93.6
Msa0944790 AT1G01010.1 32.941 170 88 6 18 167 5 168 2.41e-21 95.1
Msa0944790 AT3G10490.4 58.824 85 28 3 89 171 2 81 1.04e-20 92.4
Msa0944790 AT3G10490.3 58.824 85 28 3 89 171 2 81 1.04e-20 92.4
Msa0944790 AT5G50820.1 34.731 167 87 7 14 170 15 169 3.99e-20 87.4
Msa0944790 AT1G02220.1 36.364 132 75 4 14 141 1 127 4.90e-20 90.9
Msa0944790 AT2G43000.2 40.496 121 69 2 78 198 2 119 8.32e-19 84.0
Msa0944790 AT2G18060.2 47.619 84 38 3 94 177 2 79 8.50e-18 82.8
Msa0944790 AT5G14000.2 34.694 147 87 4 1 145 3 142 1.57e-17 79.3
Msa0944790 AT5G14000.1 31.073 177 108 5 1 175 3 167 3.41e-17 79.7
Msa0944790 AT5G22290.2 45.455 66 29 2 95 155 2 65 5.39e-15 74.3
Msa0944790 AT1G28470.1 34.682 173 84 9 16 170 77 238 9.38e-14 71.6
Msa0944790 AT3G56530.1 28.846 156 100 5 16 167 52 200 9.47e-13 68.9
Msa0944790 AT3G04430.1 32.576 132 77 3 22 142 6 136 1.48e-12 66.2
Msa0944790 AT4G29230.1 32.597 181 85 10 14 168 46 215 3.34e-12 68.2
Msa0944790 AT4G29230.2 32.597 181 85 10 14 168 45 214 3.45e-12 68.2
Msa0944790 AT4G29230.3 32.961 179 83 10 14 166 46 213 3.53e-12 67.8
Msa0944790 AT4G28500.1 32.948 173 88 8 16 170 59 221 4.59e-12 66.6
Msa0944790 AT3G55210.1 27.545 167 97 6 16 167 11 168 8.30e-12 65.5
Msa0944790 AT1G25580.1 30.732 205 106 11 16 204 58 242 2.10e-11 65.5

Find 86 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAGCAATGGTTACATTTA+TGG 0.087192 6_3:-21839191 Msa0944790:CDS
TCAAGGGAGTGTTTGGAATT+TGG 0.160932 6_3:+21839258 None:intergenic
CTCAATAGGTGATGATTTAT+TGG 0.165403 6_3:-21839492 Msa0944790:CDS
TGAGGGTGAATTATATATTA+TGG 0.206850 6_3:+21840886 None:intergenic
AATGTGCTTCTTTGCATTAA+TGG 0.210014 6_3:+21839308 None:intergenic
TTATATATATGTGAGAAATT+TGG 0.224266 6_3:+21840922 None:intergenic
AGAAATTTCGAAGAAATTAA+AGG 0.232856 6_3:+21840985 None:intergenic
CATTAATGGACCATTGAAAT+TGG 0.275416 6_3:+21839322 None:intergenic
GTTGTTTCAAAGCAAGAAAT+TGG 0.286514 6_3:-21839059 Msa0944790:CDS
GTAATGATTTCATCATCATT+AGG 0.301951 6_3:+21840742 None:intergenic
TTCTCATTCAAGGGAGTGTT+TGG 0.308314 6_3:+21839251 None:intergenic
AAAAGAAATGTGAAGAATAT+TGG 0.322654 6_3:+21841023 None:intergenic
TGAGTTCACCCTTAAAAGAT+TGG 0.333752 6_3:+21839511 None:intergenic
TCAATGGTATTGTTGCTAAA+AGG 0.335190 6_3:+21839437 None:intergenic
AAAACTCTTGTGTTCTATAA+AGG 0.349650 6_3:-21840282 Msa0944790:CDS
GAACCTCTTGATTTGCCTGC+TGG 0.358232 6_3:-21840778 Msa0944790:CDS
TATAGTATAATAATATAATA+TGG 0.359598 6_3:+21840854 None:intergenic
ACTAATAGAGCAACTGAATC+AGG 0.363531 6_3:-21840375 Msa0944790:CDS
GAGCAACTGAATCAGGCTAT+TGG 0.368357 6_3:-21840368 Msa0944790:CDS
ATTCTCTACCAACAATTCTA+TGG 0.370549 6_3:-21839138 Msa0944790:CDS
CTTGAGGAACCTTCTTCAAT+TGG 0.371024 6_3:-21839011 Msa0944790:CDS
ATATATAATTGCAGGATGAT+TGG 0.372396 6_3:-21839592 Msa0944790:intron
TAATGATTTCATCATCATTA+GGG 0.381801 6_3:+21840743 None:intergenic
TAGCAACTTGCAATCTTCCT+AGG 0.387999 6_3:-21840197 Msa0944790:CDS
TTCTTCACTTCCACCTCTTG+TGG 0.398001 6_3:-21839465 Msa0944790:CDS
CAATGGTTACATTTATGGAT+TGG 0.400827 6_3:-21839186 Msa0944790:CDS
GGTCATGCATGAATTTAGAT+TGG 0.403946 6_3:-21840229 Msa0944790:CDS
CTATTAGTTCTTGTTCCAGT+TGG 0.407304 6_3:+21840390 None:intergenic
CTAAGATGGGAGAGAAAGAT+TGG 0.407819 6_3:-21840443 Msa0944790:CDS
CCCTCTCAAATCTTGAATCA+TGG 0.416301 6_3:-21838986 Msa0944790:CDS
TGATAACATGTTCTCATTCA+AGG 0.422659 6_3:+21839241 None:intergenic
GGAATTTGGATTTGAGTTTG+AGG 0.428910 6_3:+21839272 None:intergenic
TCAGGCTATTGGAAAGCAAC+TGG 0.434898 6_3:-21840357 Msa0944790:CDS
AAATTCATGCATGACCCAAT+TGG 0.452348 6_3:+21840236 None:intergenic
TTTGAATAGGTGTGAGCCTT+GGG 0.455631 6_3:-21840656 Msa0944790:CDS
AATTATTCATACATGAATCA+AGG 0.456946 6_3:-21839218 Msa0944790:CDS
AATGCTCACCATAGAATTGT+TGG 0.464393 6_3:+21839130 None:intergenic
TTTGAAGTCATGATCATCAA+TGG 0.465809 6_3:+21839421 None:intergenic
TTGGTGAAGCTGATTTGAAT+AGG 0.466419 6_3:-21840669 Msa0944790:CDS
ATGCATGAATTTAGATTGGA+TGG 0.466731 6_3:-21840225 Msa0944790:CDS
TATATAATTGCAGGATGATT+GGG 0.467236 6_3:-21839591 Msa0944790:intron
CAAGAGGAGAGAAAACCAAT+TGG 0.473553 6_3:-21840251 Msa0944790:CDS
CCATCACCTTCATCATCAAA+TGG 0.475218 6_3:-21839389 Msa0944790:CDS
TCATTGTTCATTAAGTAGCT+TGG 0.477838 6_3:+21839356 None:intergenic
CAATATCCATTTGATGATGA+AGG 0.479530 6_3:+21839383 None:intergenic
CCTCTCAAATCTTGAATCAT+GGG 0.480354 6_3:-21838985 Msa0944790:CDS
GATAACATGTTCTCATTCAA+GGG 0.484796 6_3:+21839242 None:intergenic
ATGAGAATCTTATATGAAAG+AGG 0.487323 6_3:+21840959 None:intergenic
ATTTGAATAGGTGTGAGCCT+TGG 0.489701 6_3:-21840657 Msa0944790:CDS
GGATGATTGGGTTGTGTCCA+AGG 0.492533 6_3:-21839579 Msa0944790:CDS
GGGAAAAGTAACCAACTTGT+TGG 0.500121 6_3:-21840312 Msa0944790:CDS
GAGAGGGGACCAATTGAAGA+AGG 0.501748 6_3:+21839002 None:intergenic
ACTAATCTCACCAATTTCAA+TGG 0.503686 6_3:-21839332 Msa0944790:CDS
TTTCAAAGCAAGAAATTGGA+AGG 0.507485 6_3:-21839055 Msa0944790:CDS
CCATGATTCAAGATTTGAGA+GGG 0.508069 6_3:+21838986 None:intergenic
AGAGATAGGAAATATCCAAC+TGG 0.508548 6_3:-21840405 Msa0944790:CDS
AACAATAGGTTCTTCCATGA+TGG 0.509865 6_3:+21840816 None:intergenic
GTGAAGAATATTGGAAGGGA+AGG 0.519956 6_3:+21841032 None:intergenic
GTTGTTCTTGATGAAAACCT+TGG 0.522041 6_3:+21839562 None:intergenic
AGCAACTTGCAATCTTCCTA+GGG 0.533847 6_3:-21840196 Msa0944790:CDS
AAGAGGAGAGAAAACCAATT+GGG 0.538998 6_3:-21840250 Msa0944790:CDS
CAAATCTTGAATCATGGGAA+TGG 0.541002 6_3:-21838980 Msa0944790:CDS
GTGAATTATATATTATGGCT+AGG 0.542636 6_3:+21840891 None:intergenic
GAGGGTACCTTTGCATCCCT+AGG 0.549703 6_3:+21840180 None:intergenic
GAAATGTGAAGAATATTGGA+AGG 0.552552 6_3:+21841027 None:intergenic
TTTGTAGTGAAAGCTAAGAT+GGG 0.554108 6_3:-21840456 Msa0944790:intron
GGAAAATAAAGAGTGCAAGA+TGG 0.554428 6_3:-21839165 Msa0944790:CDS
CCATTTGATGATGAAGGTGA+TGG 0.556150 6_3:+21839389 None:intergenic
ATTATTCATACATGAATCAA+GGG 0.558255 6_3:-21839217 Msa0944790:CDS
CCCATGATTCAAGATTTGAG+AGG 0.558765 6_3:+21838985 None:intergenic
AAAGATAAAGAGATCTACAA+AGG 0.563281 6_3:-21840333 Msa0944790:CDS
AAGATAAAGAGATCTACAAA+GGG 0.564009 6_3:-21840332 Msa0944790:CDS
GGGTGAAATCTGAAACCAGC+AGG 0.566266 6_3:+21840763 None:intergenic
ATTGATGATCATGACTTCAA+AGG 0.574039 6_3:-21839419 Msa0944790:CDS
CAATCTTCCTAGGGATGCAA+AGG 0.581965 6_3:-21840187 Msa0944790:intron
TACTTACTTGGTAAATCCCA+AGG 0.598796 6_3:+21840640 None:intergenic
AACATTGTATGAAGAACTTG+AGG 0.604421 6_3:-21839027 Msa0944790:CDS
AAAGGAGGATCCACAAGAGG+TGG 0.605804 6_3:+21839455 None:intergenic
AATCAAGGGAATAATAGCAA+TGG 0.606407 6_3:-21839203 Msa0944790:CDS
ATGGTATTGTTGCTAAAAGG+AGG 0.620808 6_3:+21839440 None:intergenic
AAATGTGAAGAATATTGGAA+GGG 0.629624 6_3:+21841028 None:intergenic
AAACCAGCAGGCAAATCAAG+AGG 0.637474 6_3:+21840775 None:intergenic
CATGATTCAAGATTTGAGAG+GGG 0.641900 6_3:+21838987 None:intergenic
CTAAAAGGAGGATCCACAAG+AGG 0.668774 6_3:+21839452 None:intergenic
AATTATATATTATGGCTAGG+TGG 0.669895 6_3:+21840894 None:intergenic
TATAAAGGTAGAGCTCCAAG+AGG 0.710079 6_3:-21840267 Msa0944790:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGAAAAAAAAATTAAGA+GGG + chr6_3:21839838-21839857 None:intergenic 10.0%
!! AAAAGAAAAAAAAATTAAGA+GGG + chr6_3:21839838-21839857 None:intergenic 10.0%
!! TTATATATATGTGAGAAATT+TGG + chr6_3:21839078-21839097 None:intergenic 15.0%
!! AAAAGAAAATAATACTTACT+TGG + chr6_3:21839372-21839391 None:intergenic 15.0%
!! CAAAAGAAAAAAAAATTAAG+AGG + chr6_3:21839839-21839858 None:intergenic 15.0%
!!! TTTTCTAAATCAAAAGAAAA+TGG + chr6_3:21839865-21839884 None:intergenic 15.0%
!!! ATTTTCTTTTGATTTAGAAA+AGG - chr6_3:21839864-21839883 Msa0944790:intron 15.0%
!! CAATATAAAAATTAATGCAA+AGG - chr6_3:21839919-21839938 Msa0944790:intron 15.0%
!!! ATAAAAAGAACTCATAATTT+TGG + chr6_3:21840181-21840200 None:intergenic 15.0%
!! TTATATATATGTGAGAAATT+TGG + chr6_3:21839078-21839097 None:intergenic 15.0%
!! AAAAGAAAATAATACTTACT+TGG + chr6_3:21839372-21839391 None:intergenic 15.0%
!! CAAAAGAAAAAAAAATTAAG+AGG + chr6_3:21839839-21839858 None:intergenic 15.0%
!!! TTTTCTAAATCAAAAGAAAA+TGG + chr6_3:21839865-21839884 None:intergenic 15.0%
!!! ATTTTCTTTTGATTTAGAAA+AGG - chr6_3:21839864-21839883 Msa0944790:intron 15.0%
!! CAATATAAAAATTAATGCAA+AGG - chr6_3:21839919-21839938 Msa0944790:intron 15.0%
!!! ATAAAAAGAACTCATAATTT+TGG + chr6_3:21840181-21840200 None:intergenic 15.0%
!! AAAAGAAATGTGAAGAATAT+TGG + chr6_3:21838977-21838996 None:intergenic 20.0%
!! AGAAATTTCGAAGAAATTAA+AGG + chr6_3:21839015-21839034 None:intergenic 20.0%
!!! TAATATGGTTTTGATTTTGA+GGG + chr6_3:21839131-21839150 None:intergenic 20.0%
!!! ATAATATGGTTTTGATTTTG+AGG + chr6_3:21839132-21839151 None:intergenic 20.0%
!! TAATGATTTCATCATCATTA+GGG + chr6_3:21839257-21839276 None:intergenic 20.0%
!!! TACTTTTTATTTGCTTAAGA+AGG - chr6_3:21839275-21839294 Msa0944790:CDS 20.0%
!!! ATTTTGTCGTAATTCTTAAT+TGG + chr6_3:21840123-21840142 None:intergenic 20.0%
!! TTGATATGATATATAATTGC+AGG - chr6_3:21840397-21840416 Msa0944790:CDS 20.0%
!!! TTCATTTTCCAATCTTTTAA+GGG - chr6_3:21840478-21840497 Msa0944790:intron 20.0%
!! AATTATTCATACATGAATCA+AGG - chr6_3:21840779-21840798 Msa0944790:CDS 20.0%
!! ATTATTCATACATGAATCAA+GGG - chr6_3:21840780-21840799 Msa0944790:CDS 20.0%
!! AAAAGAAATGTGAAGAATAT+TGG + chr6_3:21838977-21838996 None:intergenic 20.0%
!! AGAAATTTCGAAGAAATTAA+AGG + chr6_3:21839015-21839034 None:intergenic 20.0%
!!! TAATATGGTTTTGATTTTGA+GGG + chr6_3:21839131-21839150 None:intergenic 20.0%
!!! ATAATATGGTTTTGATTTTG+AGG + chr6_3:21839132-21839151 None:intergenic 20.0%
!! TAATGATTTCATCATCATTA+GGG + chr6_3:21839257-21839276 None:intergenic 20.0%
!!! TACTTTTTATTTGCTTAAGA+AGG - chr6_3:21839275-21839294 Msa0944790:CDS 20.0%
!!! ATTTTGTCGTAATTCTTAAT+TGG + chr6_3:21840123-21840142 None:intergenic 20.0%
!! TTGATATGATATATAATTGC+AGG - chr6_3:21840397-21840416 Msa0944790:CDS 20.0%
!!! TTCATTTTCCAATCTTTTAA+GGG - chr6_3:21840478-21840497 Msa0944790:intron 20.0%
!! AATTATTCATACATGAATCA+AGG - chr6_3:21840779-21840798 Msa0944790:CDS 20.0%
!! ATTATTCATACATGAATCAA+GGG - chr6_3:21840780-21840799 Msa0944790:CDS 20.0%
! AAATGTGAAGAATATTGGAA+GGG + chr6_3:21838972-21838991 None:intergenic 25.0%
! ATGAGAATCTTATATGAAAG+AGG + chr6_3:21839041-21839060 None:intergenic 25.0%
! AATTATATATTATGGCTAGG+TGG + chr6_3:21839106-21839125 None:intergenic 25.0%
! GTGAATTATATATTATGGCT+AGG + chr6_3:21839109-21839128 None:intergenic 25.0%
! TGAGGGTGAATTATATATTA+TGG + chr6_3:21839114-21839133 None:intergenic 25.0%
!!! AGTTTTTTCATTATCCATCA+TGG - chr6_3:21839167-21839186 Msa0944790:CDS 25.0%
! GTAATGATTTCATCATCATT+AGG + chr6_3:21839258-21839277 None:intergenic 25.0%
!!! AATTTTAGTGCAATTGCAAT+TGG - chr6_3:21839309-21839328 Msa0944790:CDS 25.0%
! CAATCATATATAACTAACTC+CGG + chr6_3:21839480-21839499 None:intergenic 25.0%
!! ATTTCTTTTGTCAAAGAGAT+AGG - chr6_3:21839578-21839597 Msa0944790:CDS 25.0%
! AAAGATAAAGAGATCTACAA+AGG - chr6_3:21839664-21839683 Msa0944790:intron 25.0%
! AAGATAAAGAGATCTACAAA+GGG - chr6_3:21839665-21839684 Msa0944790:intron 25.0%
! AAAACTCTTGTGTTCTATAA+AGG - chr6_3:21839715-21839734 Msa0944790:intron 25.0%
!!! TTAATGCAAAGGTTTTATTG+TGG - chr6_3:21839930-21839949 Msa0944790:intron 25.0%
!! TCTAATTCATCTAATTTGCA+AGG + chr6_3:21839986-21840005 None:intergenic 25.0%
! AGTTTCAATTCAAGTAGAAT+GGG + chr6_3:21840029-21840048 None:intergenic 25.0%
!!! AAAGAACTCATAATTTTGGT+CGG + chr6_3:21840177-21840196 None:intergenic 25.0%
!! AGAAAGAAAGAAAAAGTGTA+AGG + chr6_3:21840342-21840361 None:intergenic 25.0%
! TTCTTTCTTTCTTTCTTTCT+TGG - chr6_3:21840350-21840369 Msa0944790:CDS 25.0%
! ATATATAATTGCAGGATGAT+TGG - chr6_3:21840405-21840424 Msa0944790:CDS 25.0%
! TATATAATTGCAGGATGATT+GGG - chr6_3:21840406-21840425 Msa0944790:CDS 25.0%
!! CTTCATTTTCCAATCTTTTA+AGG - chr6_3:21840477-21840496 Msa0944790:intron 25.0%
! AATAGCAATGGTTACATTTA+TGG - chr6_3:21840806-21840825 Msa0944790:CDS 25.0%
! AAATGTGAAGAATATTGGAA+GGG + chr6_3:21838972-21838991 None:intergenic 25.0%
! ATGAGAATCTTATATGAAAG+AGG + chr6_3:21839041-21839060 None:intergenic 25.0%
! AATTATATATTATGGCTAGG+TGG + chr6_3:21839106-21839125 None:intergenic 25.0%
! GTGAATTATATATTATGGCT+AGG + chr6_3:21839109-21839128 None:intergenic 25.0%
! TGAGGGTGAATTATATATTA+TGG + chr6_3:21839114-21839133 None:intergenic 25.0%
!!! AGTTTTTTCATTATCCATCA+TGG - chr6_3:21839167-21839186 Msa0944790:CDS 25.0%
! GTAATGATTTCATCATCATT+AGG + chr6_3:21839258-21839277 None:intergenic 25.0%
!!! AATTTTAGTGCAATTGCAAT+TGG - chr6_3:21839309-21839328 Msa0944790:CDS 25.0%
! CAATCATATATAACTAACTC+CGG + chr6_3:21839480-21839499 None:intergenic 25.0%
!! ATTTCTTTTGTCAAAGAGAT+AGG - chr6_3:21839578-21839597 Msa0944790:CDS 25.0%
! AAAGATAAAGAGATCTACAA+AGG - chr6_3:21839664-21839683 Msa0944790:intron 25.0%
! AAGATAAAGAGATCTACAAA+GGG - chr6_3:21839665-21839684 Msa0944790:intron 25.0%
! AAAACTCTTGTGTTCTATAA+AGG - chr6_3:21839715-21839734 Msa0944790:intron 25.0%
!!! TTAATGCAAAGGTTTTATTG+TGG - chr6_3:21839930-21839949 Msa0944790:intron 25.0%
!! TCTAATTCATCTAATTTGCA+AGG + chr6_3:21839986-21840005 None:intergenic 25.0%
! AGTTTCAATTCAAGTAGAAT+GGG + chr6_3:21840029-21840048 None:intergenic 25.0%
!!! AAAGAACTCATAATTTTGGT+CGG + chr6_3:21840177-21840196 None:intergenic 25.0%
!! AGAAAGAAAGAAAAAGTGTA+AGG + chr6_3:21840342-21840361 None:intergenic 25.0%
! TTCTTTCTTTCTTTCTTTCT+TGG - chr6_3:21840350-21840369 Msa0944790:CDS 25.0%
! ATATATAATTGCAGGATGAT+TGG - chr6_3:21840405-21840424 Msa0944790:CDS 25.0%
! TATATAATTGCAGGATGATT+GGG - chr6_3:21840406-21840425 Msa0944790:CDS 25.0%
!! CTTCATTTTCCAATCTTTTA+AGG - chr6_3:21840477-21840496 Msa0944790:intron 25.0%
! AATAGCAATGGTTACATTTA+TGG - chr6_3:21840806-21840825 Msa0944790:CDS 25.0%
GAAATGTGAAGAATATTGGA+AGG + chr6_3:21838973-21838992 None:intergenic 30.0%
!! TCACTTTTGTTCACAACAAT+AGG + chr6_3:21839198-21839217 None:intergenic 30.0%
TAACTCTTTATCCGGATAAT+CGG + chr6_3:21839450-21839469 None:intergenic 30.0%
ATTATCCGGATAAAGAGTTA+TGG - chr6_3:21839450-21839469 Msa0944790:CDS 30.0%
GATTACCATAACTCTTTATC+CGG + chr6_3:21839458-21839477 None:intergenic 30.0%
GATAAAGAGTTATGGTAATC+CGG - chr6_3:21839458-21839477 Msa0944790:CDS 30.0%
! TTTTGTAGTGAAAGCTAAGA+TGG - chr6_3:21839540-21839559 Msa0944790:CDS 30.0%
TTTGTAGTGAAAGCTAAGAT+GGG - chr6_3:21839541-21839560 Msa0944790:CDS 30.0%
! TTTTCTTCATACCAACAAGT+TGG + chr6_3:21839699-21839718 None:intergenic 30.0%
ATGCATGAATTTAGATTGGA+TGG - chr6_3:21839772-21839791 Msa0944790:intron 30.0%
CAGTTTCAATTCAAGTAGAA+TGG + chr6_3:21840030-21840049 None:intergenic 30.0%
ATATGAGTTTCTTTCTCATG+TGG - chr6_3:21840257-21840276 Msa0944790:CDS 30.0%
TGAACTCTATAGAAAGCAAA+AGG + chr6_3:21840303-21840322 None:intergenic 30.0%
CTCAATAGGTGATGATTTAT+TGG - chr6_3:21840505-21840524 Msa0944790:intron 30.0%
TCAATGGTATTGTTGCTAAA+AGG + chr6_3:21840563-21840582 None:intergenic 30.0%
! TTTGAAGTCATGATCATCAA+TGG + chr6_3:21840579-21840598 None:intergenic 30.0%
! ATTGATGATCATGACTTCAA+AGG - chr6_3:21840578-21840597 Msa0944790:intron 30.0%
!! CAATATCCATTTGATGATGA+AGG + chr6_3:21840617-21840636 None:intergenic 30.0%
TCATTGTTCATTAAGTAGCT+TGG + chr6_3:21840644-21840663 None:intergenic 30.0%
ACTAATCTCACCAATTTCAA+TGG - chr6_3:21840665-21840684 Msa0944790:CDS 30.0%
! CATTAATGGACCATTGAAAT+TGG + chr6_3:21840678-21840697 None:intergenic 30.0%
AATGTGCTTCTTTGCATTAA+TGG + chr6_3:21840692-21840711 None:intergenic 30.0%
GATAACATGTTCTCATTCAA+GGG + chr6_3:21840758-21840777 None:intergenic 30.0%
TGATAACATGTTCTCATTCA+AGG + chr6_3:21840759-21840778 None:intergenic 30.0%
AATCAAGGGAATAATAGCAA+TGG - chr6_3:21840794-21840813 Msa0944790:CDS 30.0%
CAATGGTTACATTTATGGAT+TGG - chr6_3:21840811-21840830 Msa0944790:CDS 30.0%
ATTCTCTACCAACAATTCTA+TGG - chr6_3:21840859-21840878 Msa0944790:five_prime_UTR 30.0%
! GTTGTTTCAAAGCAAGAAAT+TGG - chr6_3:21840938-21840957 Msa0944790:five_prime_UTR 30.0%
TTTCAAAGCAAGAAATTGGA+AGG - chr6_3:21840942-21840961 Msa0944790:five_prime_UTR 30.0%
AACATTGTATGAAGAACTTG+AGG - chr6_3:21840970-21840989 Msa0944790:five_prime_UTR 30.0%
GAAATGTGAAGAATATTGGA+AGG + chr6_3:21838973-21838992 None:intergenic 30.0%
!! TCACTTTTGTTCACAACAAT+AGG + chr6_3:21839198-21839217 None:intergenic 30.0%
TAACTCTTTATCCGGATAAT+CGG + chr6_3:21839450-21839469 None:intergenic 30.0%
ATTATCCGGATAAAGAGTTA+TGG - chr6_3:21839450-21839469 Msa0944790:CDS 30.0%
GATTACCATAACTCTTTATC+CGG + chr6_3:21839458-21839477 None:intergenic 30.0%
GATAAAGAGTTATGGTAATC+CGG - chr6_3:21839458-21839477 Msa0944790:CDS 30.0%
! TTTTGTAGTGAAAGCTAAGA+TGG - chr6_3:21839540-21839559 Msa0944790:CDS 30.0%
TTTGTAGTGAAAGCTAAGAT+GGG - chr6_3:21839541-21839560 Msa0944790:CDS 30.0%
! TTTTCTTCATACCAACAAGT+TGG + chr6_3:21839699-21839718 None:intergenic 30.0%
ATGCATGAATTTAGATTGGA+TGG - chr6_3:21839772-21839791 Msa0944790:intron 30.0%
CAGTTTCAATTCAAGTAGAA+TGG + chr6_3:21840030-21840049 None:intergenic 30.0%
ATATGAGTTTCTTTCTCATG+TGG - chr6_3:21840257-21840276 Msa0944790:CDS 30.0%
TGAACTCTATAGAAAGCAAA+AGG + chr6_3:21840303-21840322 None:intergenic 30.0%
CTCAATAGGTGATGATTTAT+TGG - chr6_3:21840505-21840524 Msa0944790:intron 30.0%
TCAATGGTATTGTTGCTAAA+AGG + chr6_3:21840563-21840582 None:intergenic 30.0%
! TTTGAAGTCATGATCATCAA+TGG + chr6_3:21840579-21840598 None:intergenic 30.0%
! ATTGATGATCATGACTTCAA+AGG - chr6_3:21840578-21840597 Msa0944790:intron 30.0%
!! CAATATCCATTTGATGATGA+AGG + chr6_3:21840617-21840636 None:intergenic 30.0%
TCATTGTTCATTAAGTAGCT+TGG + chr6_3:21840644-21840663 None:intergenic 30.0%
ACTAATCTCACCAATTTCAA+TGG - chr6_3:21840665-21840684 Msa0944790:CDS 30.0%
! CATTAATGGACCATTGAAAT+TGG + chr6_3:21840678-21840697 None:intergenic 30.0%
AATGTGCTTCTTTGCATTAA+TGG + chr6_3:21840692-21840711 None:intergenic 30.0%
GATAACATGTTCTCATTCAA+GGG + chr6_3:21840758-21840777 None:intergenic 30.0%
TGATAACATGTTCTCATTCA+AGG + chr6_3:21840759-21840778 None:intergenic 30.0%
AATCAAGGGAATAATAGCAA+TGG - chr6_3:21840794-21840813 Msa0944790:CDS 30.0%
CAATGGTTACATTTATGGAT+TGG - chr6_3:21840811-21840830 Msa0944790:CDS 30.0%
ATTCTCTACCAACAATTCTA+TGG - chr6_3:21840859-21840878 Msa0944790:five_prime_UTR 30.0%
! GTTGTTTCAAAGCAAGAAAT+TGG - chr6_3:21840938-21840957 Msa0944790:five_prime_UTR 30.0%
TTTCAAAGCAAGAAATTGGA+AGG - chr6_3:21840942-21840961 Msa0944790:five_prime_UTR 30.0%
AACATTGTATGAAGAACTTG+AGG - chr6_3:21840970-21840989 Msa0944790:five_prime_UTR 30.0%
AACAATAGGTTCTTCCATGA+TGG + chr6_3:21839184-21839203 None:intergenic 35.0%
!! TTGGTGAAGCTGATTTGAAT+AGG - chr6_3:21839328-21839347 Msa0944790:CDS 35.0%
TACTTACTTGGTAAATCCCA+AGG + chr6_3:21839360-21839379 None:intergenic 35.0%
ATCTTAACTCTCCGATTATC+CGG - chr6_3:21839436-21839455 Msa0944790:CDS 35.0%
AGAGATAGGAAATATCCAAC+TGG - chr6_3:21839592-21839611 Msa0944790:intron 35.0%
! CTATTAGTTCTTGTTCCAGT+TGG + chr6_3:21839610-21839629 None:intergenic 35.0%
ACTAATAGAGCAACTGAATC+AGG - chr6_3:21839622-21839641 Msa0944790:intron 35.0%
AAGAGGAGAGAAAACCAATT+GGG - chr6_3:21839747-21839766 Msa0944790:intron 35.0%
AAATTCATGCATGACCCAAT+TGG + chr6_3:21839764-21839783 None:intergenic 35.0%
GGTCATGCATGAATTTAGAT+TGG - chr6_3:21839768-21839787 Msa0944790:intron 35.0%
AATTACAGTTGCAGTCGAAA+TGG + chr6_3:21840148-21840167 None:intergenic 35.0%
! AAAGCAAAAGGTGTGATGAA+GGG + chr6_3:21840291-21840310 None:intergenic 35.0%
GTTGTTCTTGATGAAAACCT+TGG + chr6_3:21840438-21840457 None:intergenic 35.0%
TGAGTTCACCCTTAAAAGAT+TGG + chr6_3:21840489-21840508 None:intergenic 35.0%
!! CTTTTAAGGGTGAACTCAAT+AGG - chr6_3:21840491-21840510 Msa0944790:intron 35.0%
ATGGTATTGTTGCTAAAAGG+AGG + chr6_3:21840560-21840579 None:intergenic 35.0%
! GGAATTTGGATTTGAGTTTG+AGG + chr6_3:21840728-21840747 None:intergenic 35.0%
! GGAAAATAAAGAGTGCAAGA+TGG - chr6_3:21840832-21840851 Msa0944790:exon 35.0%
AATGCTCACCATAGAATTGT+TGG + chr6_3:21840870-21840889 None:intergenic 35.0%
CATGATTCAAGATTTGAGAG+GGG + chr6_3:21841013-21841032 None:intergenic 35.0%
CCATGATTCAAGATTTGAGA+GGG + chr6_3:21841014-21841033 None:intergenic 35.0%
CCTCTCAAATCTTGAATCAT+GGG - chr6_3:21841012-21841031 Msa0944790:five_prime_UTR 35.0%
CAAATCTTGAATCATGGGAA+TGG - chr6_3:21841017-21841036 Msa0944790:five_prime_UTR 35.0%
AACAATAGGTTCTTCCATGA+TGG + chr6_3:21839184-21839203 None:intergenic 35.0%
!! TTGGTGAAGCTGATTTGAAT+AGG - chr6_3:21839328-21839347 Msa0944790:CDS 35.0%
TACTTACTTGGTAAATCCCA+AGG + chr6_3:21839360-21839379 None:intergenic 35.0%
ATCTTAACTCTCCGATTATC+CGG - chr6_3:21839436-21839455 Msa0944790:CDS 35.0%
AGAGATAGGAAATATCCAAC+TGG - chr6_3:21839592-21839611 Msa0944790:intron 35.0%
! CTATTAGTTCTTGTTCCAGT+TGG + chr6_3:21839610-21839629 None:intergenic 35.0%
ACTAATAGAGCAACTGAATC+AGG - chr6_3:21839622-21839641 Msa0944790:intron 35.0%
AAGAGGAGAGAAAACCAATT+GGG - chr6_3:21839747-21839766 Msa0944790:intron 35.0%
AAATTCATGCATGACCCAAT+TGG + chr6_3:21839764-21839783 None:intergenic 35.0%
GGTCATGCATGAATTTAGAT+TGG - chr6_3:21839768-21839787 Msa0944790:intron 35.0%
AATTACAGTTGCAGTCGAAA+TGG + chr6_3:21840148-21840167 None:intergenic 35.0%
! AAAGCAAAAGGTGTGATGAA+GGG + chr6_3:21840291-21840310 None:intergenic 35.0%
GTTGTTCTTGATGAAAACCT+TGG + chr6_3:21840438-21840457 None:intergenic 35.0%
TGAGTTCACCCTTAAAAGAT+TGG + chr6_3:21840489-21840508 None:intergenic 35.0%
!! CTTTTAAGGGTGAACTCAAT+AGG - chr6_3:21840491-21840510 Msa0944790:intron 35.0%
ATGGTATTGTTGCTAAAAGG+AGG + chr6_3:21840560-21840579 None:intergenic 35.0%
! GGAATTTGGATTTGAGTTTG+AGG + chr6_3:21840728-21840747 None:intergenic 35.0%
! GGAAAATAAAGAGTGCAAGA+TGG - chr6_3:21840832-21840851 Msa0944790:exon 35.0%
AATGCTCACCATAGAATTGT+TGG + chr6_3:21840870-21840889 None:intergenic 35.0%
CATGATTCAAGATTTGAGAG+GGG + chr6_3:21841013-21841032 None:intergenic 35.0%
CCATGATTCAAGATTTGAGA+GGG + chr6_3:21841014-21841033 None:intergenic 35.0%
CCTCTCAAATCTTGAATCAT+GGG - chr6_3:21841012-21841031 Msa0944790:five_prime_UTR 35.0%
CAAATCTTGAATCATGGGAA+TGG - chr6_3:21841017-21841036 Msa0944790:five_prime_UTR 35.0%
GTGAAGAATATTGGAAGGGA+AGG + chr6_3:21838968-21838987 None:intergenic 40.0%
ATTTGAATAGGTGTGAGCCT+TGG - chr6_3:21839340-21839359 Msa0944790:CDS 40.0%
TTTGAATAGGTGTGAGCCTT+GGG - chr6_3:21839341-21839360 Msa0944790:CDS 40.0%
CTAAGATGGGAGAGAAAGAT+TGG - chr6_3:21839554-21839573 Msa0944790:CDS 40.0%
GGGAAAAGTAACCAACTTGT+TGG - chr6_3:21839685-21839704 Msa0944790:intron 40.0%
TATAAAGGTAGAGCTCCAAG+AGG - chr6_3:21839730-21839749 Msa0944790:intron 40.0%
!!! CAATTGGTTTTCTCTCCTCT+TGG + chr6_3:21839748-21839767 None:intergenic 40.0%
CAAGAGGAGAGAAAACCAAT+TGG - chr6_3:21839746-21839765 Msa0944790:intron 40.0%
TAGCAACTTGCAATCTTCCT+AGG - chr6_3:21839800-21839819 Msa0944790:intron 40.0%
AGCAACTTGCAATCTTCCTA+GGG - chr6_3:21839801-21839820 Msa0944790:intron 40.0%
! GAAAGCAAAAGGTGTGATGA+AGG + chr6_3:21840292-21840311 None:intergenic 40.0%
!! CCATTTGATGATGAAGGTGA+TGG + chr6_3:21840611-21840630 None:intergenic 40.0%
CCATCACCTTCATCATCAAA+TGG - chr6_3:21840608-21840627 Msa0944790:intron 40.0%
!! TCAAGGGAGTGTTTGGAATT+TGG + chr6_3:21840742-21840761 None:intergenic 40.0%
!! TTCTCATTCAAGGGAGTGTT+TGG + chr6_3:21840749-21840768 None:intergenic 40.0%
CTTGAGGAACCTTCTTCAAT+TGG - chr6_3:21840986-21841005 Msa0944790:five_prime_UTR 40.0%
CCCTCTCAAATCTTGAATCA+TGG - chr6_3:21841011-21841030 Msa0944790:five_prime_UTR 40.0%
CCCATGATTCAAGATTTGAG+AGG + chr6_3:21841015-21841034 None:intergenic 40.0%
GTGAAGAATATTGGAAGGGA+AGG + chr6_3:21838968-21838987 None:intergenic 40.0%
ATTTGAATAGGTGTGAGCCT+TGG - chr6_3:21839340-21839359 Msa0944790:CDS 40.0%
TTTGAATAGGTGTGAGCCTT+GGG - chr6_3:21839341-21839360 Msa0944790:CDS 40.0%
CTAAGATGGGAGAGAAAGAT+TGG - chr6_3:21839554-21839573 Msa0944790:CDS 40.0%
GGGAAAAGTAACCAACTTGT+TGG - chr6_3:21839685-21839704 Msa0944790:intron 40.0%
TATAAAGGTAGAGCTCCAAG+AGG - chr6_3:21839730-21839749 Msa0944790:intron 40.0%
!!! CAATTGGTTTTCTCTCCTCT+TGG + chr6_3:21839748-21839767 None:intergenic 40.0%
CAAGAGGAGAGAAAACCAAT+TGG - chr6_3:21839746-21839765 Msa0944790:intron 40.0%
TAGCAACTTGCAATCTTCCT+AGG - chr6_3:21839800-21839819 Msa0944790:intron 40.0%
AGCAACTTGCAATCTTCCTA+GGG - chr6_3:21839801-21839820 Msa0944790:intron 40.0%
! GAAAGCAAAAGGTGTGATGA+AGG + chr6_3:21840292-21840311 None:intergenic 40.0%
!! CCATTTGATGATGAAGGTGA+TGG + chr6_3:21840611-21840630 None:intergenic 40.0%
CCATCACCTTCATCATCAAA+TGG - chr6_3:21840608-21840627 Msa0944790:intron 40.0%
!! TCAAGGGAGTGTTTGGAATT+TGG + chr6_3:21840742-21840761 None:intergenic 40.0%
!! TTCTCATTCAAGGGAGTGTT+TGG + chr6_3:21840749-21840768 None:intergenic 40.0%
CTTGAGGAACCTTCTTCAAT+TGG - chr6_3:21840986-21841005 Msa0944790:five_prime_UTR 40.0%
CCCTCTCAAATCTTGAATCA+TGG - chr6_3:21841011-21841030 Msa0944790:five_prime_UTR 40.0%
CCCATGATTCAAGATTTGAG+AGG + chr6_3:21841015-21841034 None:intergenic 40.0%
AAACCAGCAGGCAAATCAAG+AGG + chr6_3:21839225-21839244 None:intergenic 45.0%
GAGCAACTGAATCAGGCTAT+TGG - chr6_3:21839629-21839648 Msa0944790:intron 45.0%
TCAGGCTATTGGAAAGCAAC+TGG - chr6_3:21839640-21839659 Msa0944790:intron 45.0%
CAATCTTCCTAGGGATGCAA+AGG - chr6_3:21839810-21839829 Msa0944790:intron 45.0%
AAGGTGTGATGAAGGGAGAA+AGG + chr6_3:21840284-21840303 None:intergenic 45.0%
TTCTTCACTTCCACCTCTTG+TGG - chr6_3:21840532-21840551 Msa0944790:intron 45.0%
CTAAAAGGAGGATCCACAAG+AGG + chr6_3:21840548-21840567 None:intergenic 45.0%
AAACCAGCAGGCAAATCAAG+AGG + chr6_3:21839225-21839244 None:intergenic 45.0%
GAGCAACTGAATCAGGCTAT+TGG - chr6_3:21839629-21839648 Msa0944790:intron 45.0%
TCAGGCTATTGGAAAGCAAC+TGG - chr6_3:21839640-21839659 Msa0944790:intron 45.0%
CAATCTTCCTAGGGATGCAA+AGG - chr6_3:21839810-21839829 Msa0944790:intron 45.0%
AAGGTGTGATGAAGGGAGAA+AGG + chr6_3:21840284-21840303 None:intergenic 45.0%
TTCTTCACTTCCACCTCTTG+TGG - chr6_3:21840532-21840551 Msa0944790:intron 45.0%
CTAAAAGGAGGATCCACAAG+AGG + chr6_3:21840548-21840567 None:intergenic 45.0%
!! TATAGTATAATAATATAATA+TGG + chr6_3:21839146-21839165 None:intergenic 5.0%
!! TATAGTATAATAATATAATA+TGG + chr6_3:21839146-21839165 None:intergenic 5.0%
!! GAACCTCTTGATTTGCCTGC+TGG - chr6_3:21839219-21839238 Msa0944790:CDS 50.0%
! GGGTGAAATCTGAAACCAGC+AGG + chr6_3:21839237-21839256 None:intergenic 50.0%
! GGATGATTGGGTTGTGTCCA+AGG - chr6_3:21840418-21840437 Msa0944790:CDS 50.0%
AAAGGAGGATCCACAAGAGG+TGG + chr6_3:21840545-21840564 None:intergenic 50.0%
GAGAGGGGACCAATTGAAGA+AGG + chr6_3:21840998-21841017 None:intergenic 50.0%
!! GAACCTCTTGATTTGCCTGC+TGG - chr6_3:21839219-21839238 Msa0944790:CDS 50.0%
! GGGTGAAATCTGAAACCAGC+AGG + chr6_3:21839237-21839256 None:intergenic 50.0%
! GGATGATTGGGTTGTGTCCA+AGG - chr6_3:21840418-21840437 Msa0944790:CDS 50.0%
AAAGGAGGATCCACAAGAGG+TGG + chr6_3:21840545-21840564 None:intergenic 50.0%
GAGAGGGGACCAATTGAAGA+AGG + chr6_3:21840998-21841017 None:intergenic 50.0%
!! GAGGGTACCTTTGCATCCCT+AGG + chr6_3:21839820-21839839 None:intergenic 55.0%
!! GAGGGTACCTTTGCATCCCT+AGG + chr6_3:21839820-21839839 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 21838965 21841054 21838965 ID=Msa0944790;Name=Msa0944790
chr6_3 mRNA 21838965 21841054 21838965 ID=Msa0944790-mRNA-1;Parent=Msa0944790;Name=Msa0944790-mRNA-1;_AED=0.01;_eAED=0.01;_QI=221|1|0.66|1|1|1|3|0|368
chr6_3 exon 21838965 21839600 21838965 ID=Msa0944790-mRNA-1:exon:6506;Parent=Msa0944790-mRNA-1
chr6_3 exon 21840188 21840471 21840188 ID=Msa0944790-mRNA-1:exon:6505;Parent=Msa0944790-mRNA-1
chr6_3 exon 21840647 21841054 21840647 ID=Msa0944790-mRNA-1:exon:6504;Parent=Msa0944790-mRNA-1
chr6_3 five_prime_UTR 21840834 21841054 21840834 ID=Msa0944790-mRNA-1:five_prime_utr;Parent=Msa0944790-mRNA-1
chr6_3 CDS 21840647 21840833 21840647 ID=Msa0944790-mRNA-1:cds;Parent=Msa0944790-mRNA-1
chr6_3 CDS 21840188 21840471 21840188 ID=Msa0944790-mRNA-1:cds;Parent=Msa0944790-mRNA-1
chr6_3 CDS 21838965 21839600 21838965 ID=Msa0944790-mRNA-1:cds;Parent=Msa0944790-mRNA-1
Gene Sequence

>Msa0944790

ATGGAAGAACCTATTGTTGTGAACAAAAGTGATGAACCTCTTGATTTGCCTGCTGGTTTCAGATTTCACCCTAATGATGATGAAATCATTACTTTTTATTTGCTTAAGAAGGTATTGAATAGTAATTTTAGTGCAATTGCAATTGGTGAAGCTGATTTGAATAGGTGTGAGCCTTGGGATTTACCAATGAAAGCTAAGATGGGAGAGAAAGATTGGTATTTCTTTTGTCAAAGAGATAGGAAATATCCAACTGGAACAAGAACTAATAGAGCAACTGAATCAGGCTATTGGAAAGCAACTGGAAAAGATAAAGAGATCTACAAAGGGAAAAGTAACCAACTTGTTGGTATGAAGAAAACTCTTGTGTTCTATAAAGGTAGAGCTCCAAGAGGAGAGAAAACCAATTGGGTCATGCATGAATTTAGATTGGATGGAACATTAGCAACTTGCAATCTTCCTAGGGATGCAAAGGATGATTGGGTTGTGTCCAAGGTTTTCATCAAGAACAACATTGAAGTTAAAAAAACTACTTCATTTTCCAATCTTTTAAGGGTGAACTCAATAGGTGATGATTTATTGGATTTTTCTTCACTTCCACCTCTTGTGGATCCTCCTTTTAGCAACAATACCATTGATGATCATGACTTCAAAGGAATCAATCCATCACCTTCATCATCAAATGGATATTGTTTTCCAAGCTACTTAATGAACAATGAAACTAATCTCACCAATTTCAATGGTCCATTAATGCAAAGAAGCACATTTTCATCACATCAACCTCAAACTCAAATCCAAATTCCAAACACTCCCTTGAATGAGAACATGTTATCAAATTATTCATACATGAATCAAGGGAATAATAGCAATGGTTACATTTATGGATTGGAAAATAAAGAGTGCAAGATGGAGCAATTCTCTACCAACAATTCTATGGTGAGCATTTCACAAGACACATGTTTGAGCAATGACATAAACAATGAGACATCATCTGTTGTTTCAAAGCAAGAAATTGGAAGGAATGCAACATTGTATGAAGAACTTGAGGAACCTTCTTCAATTGGTCCCCTCTCAAATCTTGAATCATGGGAATGGCTATTGAAGAGTTAA
Protein sequence

>Msa0944790

MEEPIVVNKSDEPLDLPAGFRFHPNDDEIITFYLLKKVLNSNFSAIAIGEADLNRCEPWDLPMKAKMGEKDWYFFCQRDRKYPTGTRTNRATESGYWKATGKDKEIYKGKSNQLVGMKKTLVFYKGRAPRGEKTNWVMHEFRLDGTLATCNLPRDAKDDWVVSKVFIKNNIEVKKTTSFSNLLRVNSIGDDLLDFSSLPPLVDPPFSNNTIDDHDFKGINPSPSSSNGYCFPSYLMNNETNLTNFNGPLMQRSTFSSHQPQTQIQIPNTPLNENMLSNYSYMNQGNNSNGYIYGLENKECKMEQFSTNNSMVSISQDTCLSNDINNETSSVVSKQEIGRNATLYEELEEPSSIGPLSNLESWEWLLKS*