AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0185570

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0185570 MtrunA17_Chr3g0110311 96.212 264 10 0 1 264 1 264 0.0 519
Msa0185570 MtrunA17_Chr5g0434531 65.056 269 86 3 1 264 1 266 8.97e-116 333
Msa0185570 MtrunA17_Chr8g0391511 48.594 249 119 3 25 264 29 277 3.50e-80 243
Msa0185570 MtrunA17_Chr7g0230381 42.366 262 134 10 6 256 16 271 1.24e-56 182
Msa0185570 MtrunA17_Chr7g0262011 28.571 273 184 4 1 265 76 345 8.98e-31 117
Msa0185570 MtrunA17_Chr2g0323011 32.474 194 117 3 42 221 45 238 5.64e-24 97.1
Msa0185570 MtrunA17_Chr1g0168311 30.909 275 167 7 12 265 8 280 1.05e-23 97.4
Msa0185570 MtrunA17_Chr2g0322981 29.536 237 149 6 4 222 3 239 1.93e-23 95.5
Msa0185570 MtrunA17_Chr1g0186151 30.116 259 159 4 27 265 32 288 3.44e-23 96.7
Msa0185570 MtrunA17_Chr1g0190321 27.049 244 158 10 26 252 31 271 1.26e-22 94.4
Msa0185570 MtrunA17_Chr1g0205771 25.820 244 160 4 41 265 56 297 1.33e-19 88.2
Msa0185570 MtrunA17_Chr1g0206331 28.980 245 144 9 5 223 8 248 7.19e-19 85.9
Msa0185570 MtrunA17_Chr7g0234231 26.943 193 125 3 44 222 42 232 1.76e-17 79.7
Msa0185570 MtrunA17_Chr6g0474811 29.339 242 142 7 7 222 8 246 2.20e-17 81.6
Msa0185570 MtrunA17_Chr1g0206351 29.302 215 132 4 27 221 33 247 3.71e-17 80.9
Msa0185570 MtrunA17_Chr8g0354351 22.776 281 189 6 7 263 9 285 4.05e-17 80.9
Msa0185570 MtrunA17_Chr7g0226901 29.333 225 143 8 10 223 13 232 4.90e-17 78.6
Msa0185570 MtrunA17_Chr6g0474971 31.343 201 117 6 41 221 38 237 6.33e-17 79.0
Msa0185570 MtrunA17_Chr6g0475001 28.750 240 147 8 6 221 5 244 7.44e-17 80.1
Msa0185570 MtrunA17_Chr1g0206361 26.275 255 163 8 32 262 40 293 7.90e-17 80.1
Msa0185570 MtrunA17_Chr6g0474871 29.289 239 143 6 7 222 8 243 8.32e-17 80.1
Msa0185570 MtrunA17_Chr6g0474901 29.353 201 121 5 41 221 38 237 1.68e-16 79.0
Msa0185570 MtrunA17_Chr3g0081011 25.500 200 137 2 34 221 39 238 1.76e-16 79.0
Msa0185570 MtrunA17_Chr3g0081031 23.636 275 177 8 4 247 9 281 1.84e-16 79.0
Msa0185570 MtrunA17_Chr3g0081001 26.866 201 134 2 34 221 39 239 2.59e-16 78.6
Msa0185570 MtrunA17_Chr6g0475091 28.856 201 124 4 41 222 54 254 5.06e-16 77.8
Msa0185570 MtrunA17_Chr6g0475201 29.167 240 147 6 4 221 5 243 1.22e-15 76.6
Msa0185570 MtrunA17_Chr3g0081051 26.866 201 125 4 41 223 40 236 2.33e-15 73.9
Msa0185570 MtrunA17_Chr5g0428531 26.582 237 147 7 10 223 11 243 2.83e-15 73.9
Msa0185570 MtrunA17_Chr8g0354341 25.123 203 137 2 34 221 37 239 4.07e-15 73.2
Msa0185570 MtrunA17_Chr8g0354421 28.634 227 135 7 1 204 23 245 7.74e-15 73.9
Msa0185570 MtrunA17_Chr6g0474861 29.016 193 112 5 27 199 27 214 9.57e-15 73.9
Msa0185570 MtrunA17_Chr5g0428571 26.263 198 130 3 41 223 45 241 2.01e-14 72.8
Msa0185570 MtrunA17_Chr5g0394001 26.829 246 160 6 38 264 41 285 2.21e-14 72.8
Msa0185570 MtrunA17_Chr5g0428591 25.217 230 154 4 10 222 11 239 4.80e-14 70.5
Msa0185570 MtrunA17_Chr6g0475121 28.729 181 109 4 60 221 65 244 1.06e-13 70.5
Msa0185570 MtrunA17_Chr8g0354411 28.141 199 118 6 28 204 29 224 1.61e-13 69.3
Msa0185570 MtrunA17_Chr2g0280381 25.620 242 150 8 2 221 1 234 3.14e-13 68.2
Msa0185570 MtrunA17_Chr1g0206201 26.400 250 158 7 7 230 7 256 4.04e-13 67.8
Msa0185570 MtrunA17_Chr4g0058891 31.210 157 94 7 76 223 82 233 4.26e-13 68.9
Msa0185570 MtrunA17_Chr1g0206291 26.778 239 148 9 7 221 23 258 1.10e-12 67.4
Msa0185570 MtrunA17_Chr3g0082951 36.275 102 61 1 28 125 116 217 1.16e-12 65.9
Msa0185570 MtrunA17_Chr8g0354281 25.954 262 162 8 28 260 29 287 2.03e-12 67.0
Msa0185570 MtrunA17_Chr3g0109411 24.186 215 146 3 24 222 25 238 2.21e-12 66.6
Msa0185570 MtrunA17_Chr1g0206231 25.681 257 146 8 42 262 52 299 3.16e-12 66.2
Msa0185570 MtrunA17_Chr2g0280391 24.852 169 113 3 41 197 50 216 4.51e-12 64.7
Msa0185570 MtrunA17_Chr1g0154311 24.231 260 158 9 41 264 49 305 6.45e-12 65.5
Msa0185570 MtrunA17_Chr8g0354431 24.554 224 149 6 1 204 1 224 9.74e-12 64.7
Msa0185570 MtrunA17_Chr8g0347571 26.816 179 118 3 55 222 61 237 4.49e-11 62.8
Msa0185570 MtrunA17_Chr6g0475111 26.667 240 155 5 3 222 9 247 4.81e-11 62.8
Msa0185570 MtrunA17_Chr6g0475111 22.632 190 122 4 28 197 286 470 5.08e-11 62.8
Msa0185570 MtrunA17_Chr5g0393981 26.471 204 127 5 38 222 113 312 8.38e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0185570 AT5G37660.1 59.696 263 96 5 1 256 9 268 9.73e-107 311
Msa0185570 AT5G37660.2 59.696 263 96 5 1 256 9 268 1.62e-106 311
Msa0185570 AT2G01660.3 54.348 276 112 9 1 264 1 274 2.45e-90 269
Msa0185570 AT2G01660.1 54.348 276 112 9 1 264 1 274 3.15e-90 269
Msa0185570 AT2G01660.2 54.435 248 98 8 1 238 1 243 6.66e-83 249
Msa0185570 AT1G70690.1 42.188 256 134 6 1 245 1 253 9.09e-66 207
Msa0185570 AT3G60720.3 40.081 247 134 6 28 264 29 271 7.35e-51 168
Msa0185570 AT3G60720.1 40.081 247 134 6 28 264 29 271 8.42e-51 168
Msa0185570 AT3G60720.2 40.865 208 113 4 28 225 29 236 3.79e-44 150
Msa0185570 AT5G43980.1 25.191 262 172 5 27 265 27 287 1.88e-20 89.0
Msa0185570 AT1G04520.1 27.007 274 172 7 17 265 24 294 1.40e-19 86.7
Msa0185570 AT5G48540.1 30.052 193 119 3 45 221 43 235 2.26e-19 85.5
Msa0185570 AT2G33330.1 27.899 276 178 7 10 265 17 291 5.92e-19 84.7
Msa0185570 AT3G22060.1 29.767 215 131 5 25 221 31 243 6.92e-18 80.9
Msa0185570 AT3G58310.1 28.692 237 144 9 8 222 16 249 1.86e-15 74.3
Msa0185570 AT1G63580.1 27.138 269 169 8 8 254 7 270 1.99e-15 74.7
Msa0185570 AT1G63550.1 27.434 226 134 6 19 224 31 246 2.01e-15 75.1
Msa0185570 AT3G21990.1 27.160 243 145 10 8 222 11 249 3.09e-15 73.9
Msa0185570 AT4G20640.1 26.250 240 151 7 8 222 11 249 5.39e-15 73.2
Msa0185570 AT4G20630.1 26.250 240 151 7 8 222 11 249 5.39e-15 73.2
Msa0185570 AT4G20580.1 26.250 240 151 7 8 222 11 249 5.39e-15 73.2
Msa0185570 AT4G20600.1 26.250 240 151 7 8 222 11 249 5.39e-15 73.2
Msa0185570 AT4G20620.1 26.250 240 151 7 8 222 11 249 5.39e-15 73.2
Msa0185570 AT4G20610.1 26.250 240 151 7 8 222 11 249 5.39e-15 73.2
Msa0185570 AT4G20590.1 26.250 240 151 7 8 222 11 249 5.39e-15 73.2
Msa0185570 AT4G20570.1 26.250 240 151 7 8 222 25 263 5.70e-15 73.2
Msa0185570 AT4G20560.1 26.250 240 151 7 8 222 25 263 5.70e-15 73.2
Msa0185570 AT4G20540.1 26.250 240 151 7 8 222 25 263 5.70e-15 73.2
Msa0185570 AT4G20645.1 26.250 240 151 7 8 222 25 263 5.70e-15 73.2
Msa0185570 AT4G20530.1 26.250 240 151 7 8 222 25 263 5.70e-15 73.2
Msa0185570 AT4G20550.1 26.250 240 151 7 8 222 25 263 5.70e-15 73.2
Msa0185570 AT4G20670.1 26.250 240 151 7 8 222 11 249 6.75e-15 73.2
Msa0185570 AT1G61750.1 26.697 221 128 7 27 221 28 240 9.86e-15 73.6
Msa0185570 AT4G05200.2 25.941 239 149 7 9 222 26 261 1.42e-13 70.9
Msa0185570 AT3G22010.1 26.432 227 132 9 25 222 36 256 1.47e-13 69.3
Msa0185570 AT4G05200.1 25.941 239 149 7 9 222 8 243 1.48e-13 70.9
Msa0185570 AT5G41300.1 21.453 289 199 5 1 263 1 287 5.14e-13 67.8
Msa0185570 AT1G63600.1 26.829 205 125 4 39 221 50 251 1.14e-12 67.4
Msa0185570 AT4G23130.1 28.571 196 121 5 42 221 46 238 4.42e-12 66.2
Msa0185570 AT5G41290.1 23.265 245 164 6 1 223 1 243 5.09e-12 65.1
Msa0185570 AT4G23130.2 28.571 196 121 5 42 221 46 238 5.09e-12 66.2
Msa0185570 AT4G23130.3 28.571 196 121 5 42 221 46 238 5.23e-12 65.9
Msa0185570 AT1G63570.3 27.907 215 133 6 29 223 29 241 9.45e-12 64.3
Msa0185570 AT1G63570.1 27.907 215 133 6 29 223 29 241 9.45e-12 64.3
Msa0185570 AT4G23280.2 28.037 214 129 6 28 221 28 236 1.19e-11 65.1
Msa0185570 AT4G23280.1 28.037 214 129 6 28 221 28 236 1.22e-11 65.1
Msa0185570 AT1G63570.2 27.907 215 133 6 29 223 82 294 1.25e-11 64.3
Msa0185570 AT4G23280.3 28.037 214 129 6 28 221 28 236 1.42e-11 64.7
Msa0185570 AT3G21970.1 27.500 240 134 10 8 216 12 242 2.89e-11 62.8
Msa0185570 AT1G70530.3 26.244 221 128 8 67 265 67 274 7.42e-11 62.4
Msa0185570 AT1G70530.2 26.244 221 128 8 67 265 67 274 9.80e-11 62.0

Find 109 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGACATTTGCCATAATTAT+TGG 0.167670 1_4:-75915434 Msa0185570:CDS
TGTAGGTTGCTGAGTTTATT+AGG 0.179076 1_4:+75916749 None:intergenic
CTCCATTGCAAATTTGCTTT+TGG 0.183335 1_4:-75915139 Msa0185570:three_prime_UTR
GATTATGGAGATATGTTCTT+AGG 0.204730 1_4:-75916283 Msa0185570:CDS
GATTGTCCTTCTGGGGATTA+TGG 0.218428 1_4:-75916298 Msa0185570:CDS
CGGGTTCAGGTGGGTTGTTT+AGG 0.228798 1_4:-75916426 Msa0185570:CDS
ATCAAAGTTTGTCAAACTTA+TGG 0.233696 1_4:-75915199 Msa0185570:three_prime_UTR
TTGAGAAATGATTGTCCTTC+TGG 0.234841 1_4:-75916307 Msa0185570:CDS
GACATCCATGTGAATATAAA+AGG 0.243532 1_4:-75914960 Msa0185570:three_prime_UTR
TTGTTTAGGGTTGGTGGTTC+GGG 0.272429 1_4:-75916412 Msa0185570:CDS
TTGGGTGGGTTGGCGGGTTC+AGG 0.279854 1_4:-75916439 Msa0185570:CDS
TGCTAATAATCCAATAATTA+TGG 0.281272 1_4:+75915424 None:intergenic
GGGTTCAGGTGGGTTGTTTA+GGG 0.285383 1_4:-75916425 Msa0185570:CDS
GGGATGTGAGGAGTGAGTTT+AGG 0.299474 1_4:+75916770 None:intergenic
TGGTATTTGAGAAGATAAAA+AGG 0.304797 1_4:+75915101 None:intergenic
GGTGGGTTGGCGGGTTCAGG+TGG 0.311303 1_4:-75916436 Msa0185570:CDS
GTTGTTTAGGGTTGGTGGTT+CGG 0.315244 1_4:-75916413 Msa0185570:CDS
ACTCTACTGGTGGTGCTGGT+GGG 0.348191 1_4:-75916243 Msa0185570:CDS
GACGATGTCGTTAGGGTTTG+AGG 0.353702 1_4:+75916699 None:intergenic
CTCTACTGGTGGTGCTGGTG+GGG 0.370242 1_4:-75916242 Msa0185570:CDS
TTAGGTTGGATTCGTAGGTT+GGG 0.379852 1_4:+75916788 None:intergenic
TTTAGGTTGGATTCGTAGGT+TGG 0.384495 1_4:+75916787 None:intergenic
TACTCTACTGGTGGTGCTGG+TGG 0.391074 1_4:-75916244 Msa0185570:CDS
GGTGGGTTGTTTAGGGTTGG+TGG 0.391830 1_4:-75916418 Msa0185570:CDS
TGCTGTGTTGGGTGGGTTGG+CGG 0.395709 1_4:-75916446 Msa0185570:CDS
GCTGTGTTGGGTGGGTTGGC+GGG 0.402006 1_4:-75916445 Msa0185570:CDS
AGGCCGTAGACGATGTCGTT+AGG 0.405035 1_4:+75916691 None:intergenic
TGGTGGTTCGGGTCAGTTGA+AGG 0.409087 1_4:-75916401 Msa0185570:CDS
GTAGGTTGCTGAGTTTATTA+GGG 0.412170 1_4:+75916750 None:intergenic
TCAGGTGGGTTGTTTAGGGT+TGG 0.416015 1_4:-75916421 Msa0185570:CDS
CCCGGGTCATACCCTACTTC+AGG 0.420966 1_4:+75916478 None:intergenic
TGAGAAATGATTGTCCTTCT+GGG 0.421310 1_4:-75916306 Msa0185570:CDS
TGAAAGTTGAGAAGATCAAG+AGG 0.435685 1_4:+75916878 None:intergenic
ATTATGGAGATATGTTCTTA+GGG 0.446228 1_4:-75916282 Msa0185570:CDS
TGAGACAGCGCGTGCAATGC+AGG 0.450074 1_4:+75916627 None:intergenic
TGTGAGGAGTGAGTTTAGGT+TGG 0.450370 1_4:+75916774 None:intergenic
AAGAAATGTGGGCCTGAAGT+AGG 0.455715 1_4:-75916490 Msa0185570:CDS
AGATGCTGTGTTGGGTGGGT+TGG 0.456176 1_4:-75916449 Msa0185570:CDS
GGCCGTAGACGATGTCGTTA+GGG 0.457634 1_4:+75916692 None:intergenic
AACACAGCATCTATCGTTCC+CGG 0.461385 1_4:+75916460 None:intergenic
CATATTGAGAAGCAAAGAAA+TGG 0.466949 1_4:-75916923 Msa0185570:exon
TGAGTTTAGGTTGGATTCGT+AGG 0.468195 1_4:+75916783 None:intergenic
TTTGGCCTTACCATGAGGCT+TGG 0.468981 1_4:+75916207 None:intergenic
CAAATTTGCAATGGAGAAGA+AGG 0.472499 1_4:+75915146 None:intergenic
GATGATGGTGAAGTTGTTGT+AGG 0.488958 1_4:+75916723 None:intergenic
TAGGTTGGATTCGTAGGTTG+GGG 0.494696 1_4:+75916789 None:intergenic
AACCCTAACGACATCGTCTA+CGG 0.495402 1_4:-75916694 Msa0185570:CDS
ACGATAGATGCTGTGTTGGG+TGG 0.499063 1_4:-75916454 Msa0185570:CDS
GCAATGCAGGAGGAGCAGTC+TGG 0.502669 1_4:+75916640 None:intergenic
TTCCAAAAGCAAATTTGCAA+TGG 0.509675 1_4:+75915137 None:intergenic
AGGTACTCTACTGGTGGTGC+TGG 0.511132 1_4:-75916247 Msa0185570:CDS
GAAGTTGTTGTAGGATGTGT+AGG 0.519106 1_4:+75916732 None:intergenic
GGTGGTTCGGGTCAGTTGAA+GGG 0.521698 1_4:-75916400 Msa0185570:CDS
CTGTGGGGATGGAAAATGAA+TGG 0.522591 1_4:+75916851 None:intergenic
ACAACTTTGTTGAGTGGGGA+AGG 0.522805 1_4:+75914888 None:intergenic
CTGAGTTTATTAGGGATGTG+AGG 0.524550 1_4:+75916758 None:intergenic
ATGTGAATATAAAAGGCAAA+AGG 0.530706 1_4:-75914953 Msa0185570:three_prime_UTR
AATAGCAATATAAGAAGAGA+GGG 0.531320 1_4:+75915060 None:intergenic
GGCGGCGTAGTGCAACTAGA+AGG 0.532882 1_4:-75916574 Msa0185570:CDS
GAGGAATGTGTCTGTGGGGA+TGG 0.535481 1_4:+75916840 None:intergenic
CGCACCGGTGACATATGTCC+TGG 0.536550 1_4:-75916604 Msa0185570:CDS
ACTACGCCGCCGCACACGCC+AGG 0.536702 1_4:+75916586 None:intergenic
AGAAATGTGGGCCTGAAGTA+GGG 0.540842 1_4:-75916489 Msa0185570:CDS
GACAATCATTTCTCAACCGT+CGG 0.542438 1_4:+75916314 None:intergenic
GGAACGATAGATGCTGTGTT+GGG 0.547252 1_4:-75916457 Msa0185570:CDS
CAACTTTGTTGAGTGGGGAA+GGG 0.549838 1_4:+75914889 None:intergenic
TATAAAAGGCAAAAGGAAAG+AGG 0.550930 1_4:-75914946 Msa0185570:three_prime_UTR
TGTTATGCAAGGTACTCTAC+TGG 0.554321 1_4:-75916256 Msa0185570:CDS
GTTAGGGTTTGAGGAGATGA+TGG 0.555268 1_4:+75916708 None:intergenic
GTGGGTTGGCGGGTTCAGGT+GGG 0.556632 1_4:-75916435 Msa0185570:CDS
CGATAGATGCTGTGTTGGGT+GGG 0.557400 1_4:-75916453 Msa0185570:CDS
ATATTCACATGGATGTCCAA+TGG 0.558742 1_4:+75914966 None:intergenic
TGGAAATGTCACCACGACAT+TGG 0.567004 1_4:+75916665 None:intergenic
TTCTTGAGAAGGATTTGTGA+GGG 0.570265 1_4:-75915372 Msa0185570:exon
GCAGGAGGAGCAGTCTGGCA+TGG 0.570950 1_4:+75916645 None:intergenic
TGTCACCACGACATTGGTAG+AGG 0.571287 1_4:+75916671 None:intergenic
GTGTCAAGATTGTGTTTCAG+AGG 0.572991 1_4:-75916341 Msa0185570:CDS
GCCTGAAGTAGGGTATGACC+CGG 0.573127 1_4:-75916479 Msa0185570:CDS
TTCGGGTCAGTTGAAGGGAA+TGG 0.573592 1_4:-75916395 Msa0185570:CDS
AGAAGGATTTGTGAGGGACA+AGG 0.574299 1_4:-75915366 Msa0185570:intron
GAGAAATGATTGTCCTTCTG+GGG 0.574534 1_4:-75916305 Msa0185570:CDS
CATGCTTACTCCAAGCCTCA+TGG 0.577319 1_4:-75916217 Msa0185570:intron
CCGTAGAGGAATGTGTCTGT+GGG 0.581627 1_4:+75916835 None:intergenic
ACCGTAGAGGAATGTGTCTG+TGG 0.584034 1_4:+75916834 None:intergenic
GCACGCGCTGTCTCACGCAC+CGG 0.588396 1_4:-75916619 Msa0185570:CDS
CCCACAGACACATTCCTCTA+CGG 0.588964 1_4:-75916835 Msa0185570:CDS
GGGAACGATAGATGCTGTGT+TGG 0.602336 1_4:-75916458 Msa0185570:CDS
ACACAGCATCTATCGTTCCC+GGG 0.603589 1_4:+75916461 None:intergenic
AAATAGCAATATAAGAAGAG+AGG 0.603886 1_4:+75915059 None:intergenic
GAAAGTTGAGAAGATCAAGA+GGG 0.611900 1_4:+75916879 None:intergenic
GGCAAGAAAAGATAAGACAT+TGG 0.612310 1_4:+75915081 None:intergenic
CTTGTGTGCACCCACCGTAG+AGG 0.614149 1_4:+75916821 None:intergenic
AAGGGAATGGCACAGTGTGT+TGG 0.615028 1_4:-75916382 Msa0185570:CDS
TACGGCCTCTACCAATGTCG+TGG 0.620996 1_4:-75916676 Msa0185570:CDS
ATATGTCCTGGCGTGTGCGG+CGG 0.627188 1_4:-75916592 Msa0185570:CDS
GTGTTTCAGAGGCAATCCGA+CGG 0.633404 1_4:-75916330 Msa0185570:CDS
GACAGCGCGTGCAATGCAGG+AGG 0.641294 1_4:+75916630 None:intergenic
CAGACACATTCCTCTACGGT+GGG 0.641339 1_4:-75916831 Msa0185570:CDS
TTTCTTGAGAAGGATTTGTG+AGG 0.642073 1_4:-75915373 Msa0185570:exon
TCTTAGGGAAGTGTTATGCA+AGG 0.643121 1_4:-75916267 Msa0185570:CDS
ACAGACACATTCCTCTACGG+TGG 0.643716 1_4:-75916832 Msa0185570:CDS
CACGCCAGGACATATGTCAC+CGG 0.653459 1_4:+75916600 None:intergenic
ATATCTCCATAATCCCCAGA+AGG 0.659310 1_4:+75916292 None:intergenic
TATGCAAGGTACTCTACTGG+TGG 0.668750 1_4:-75916253 Msa0185570:CDS
GACATATGTCCTGGCGTGTG+CGG 0.669580 1_4:-75916595 Msa0185570:CDS
GAAGGCTGAGAATTGATCAG+TGG 0.681543 1_4:+75915164 None:intergenic
CCTGAAGTAGGGTATGACCC+GGG 0.716639 1_4:-75916478 Msa0185570:CDS
CGTAGAGGAATGTGTCTGTG+GGG 0.745210 1_4:+75916836 None:intergenic
GCAGGTAAATCAGATCACGA+TGG 0.755003 1_4:-75915461 Msa0185570:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATTCTTTTAGTTTTAA+TGG + chr1_4:75915708-75915727 None:intergenic 10.0%
!!! CATTTTTTAATTTAAATTGA+TGG - chr1_4:75916112-75916131 Msa0185570:intron 10.0%
!! AGAAAATATTAAAACAAATA+TGG + chr1_4:75916610-75916629 None:intergenic 10.0%
!!! AAATATTCTTTTAGTTTTAA+TGG + chr1_4:75915708-75915727 None:intergenic 10.0%
!!! CATTTTTTAATTTAAATTGA+TGG - chr1_4:75916112-75916131 Msa0185570:intron 10.0%
!! AGAAAATATTAAAACAAATA+TGG + chr1_4:75916610-75916629 None:intergenic 10.0%
!!! TATGATAATGTTAAGTTTTT+AGG - chr1_4:75915310-75915329 Msa0185570:intron 15.0%
!!! GGGAAAAATAATAATAATTT+TGG + chr1_4:75915662-75915681 None:intergenic 15.0%
!!! AAAACTAAAAGAATATTTTG+TGG - chr1_4:75915710-75915729 Msa0185570:intron 15.0%
!!! TATGATAATGTTAAGTTTTT+AGG - chr1_4:75915310-75915329 Msa0185570:intron 15.0%
!!! GGGAAAAATAATAATAATTT+TGG + chr1_4:75915662-75915681 None:intergenic 15.0%
!!! AAAACTAAAAGAATATTTTG+TGG - chr1_4:75915710-75915729 Msa0185570:intron 15.0%
!! ATTCTTCAAAAAACCATATT+AGG + chr1_4:75915746-75915765 None:intergenic 20.0%
!!! TTTTTGTGTTTAATGTTGTT+TGG - chr1_4:75915765-75915784 Msa0185570:intron 20.0%
!!! TTTTGTGTTTAATGTTGTTT+GGG - chr1_4:75915766-75915785 Msa0185570:intron 20.0%
!! AATCTATGAATATCTATTTG+TGG - chr1_4:75915839-75915858 Msa0185570:intron 20.0%
!! TAGAAAAGAATGTAAATATG+AGG - chr1_4:75915893-75915912 Msa0185570:intron 20.0%
!!! AATACATGTGATTTTTTCAA+AGG - chr1_4:75916168-75916187 Msa0185570:intron 20.0%
!!! GCTAATTTATTTGATTCTTT+TGG - chr1_4:75916353-75916372 Msa0185570:CDS 20.0%
!! TGCTAATAATCCAATAATTA+TGG + chr1_4:75916427-75916446 None:intergenic 20.0%
!! AAACAAATATGGAATCATTT+AGG + chr1_4:75916599-75916618 None:intergenic 20.0%
!! GTTGAGAAAAATAGAATATT+TGG + chr1_4:75916940-75916959 None:intergenic 20.0%
!! ATTCTTCAAAAAACCATATT+AGG + chr1_4:75915746-75915765 None:intergenic 20.0%
!!! TTTTTGTGTTTAATGTTGTT+TGG - chr1_4:75915765-75915784 Msa0185570:intron 20.0%
!!! TTTTGTGTTTAATGTTGTTT+GGG - chr1_4:75915766-75915785 Msa0185570:intron 20.0%
!! AATCTATGAATATCTATTTG+TGG - chr1_4:75915839-75915858 Msa0185570:intron 20.0%
!! TAGAAAAGAATGTAAATATG+AGG - chr1_4:75915893-75915912 Msa0185570:intron 20.0%
!!! AATACATGTGATTTTTTCAA+AGG - chr1_4:75916168-75916187 Msa0185570:intron 20.0%
!!! GCTAATTTATTTGATTCTTT+TGG - chr1_4:75916353-75916372 Msa0185570:CDS 20.0%
!! TGCTAATAATCCAATAATTA+TGG + chr1_4:75916427-75916446 None:intergenic 20.0%
!! AAACAAATATGGAATCATTT+AGG + chr1_4:75916599-75916618 None:intergenic 20.0%
!! GTTGAGAAAAATAGAATATT+TGG + chr1_4:75916940-75916959 None:intergenic 20.0%
!!! TAATGTTAAGTTTTTAGGCA+TGG - chr1_4:75915315-75915334 Msa0185570:intron 25.0%
! ATTATGGAGATATGTTCTTA+GGG - chr1_4:75915566-75915585 Msa0185570:intron 25.0%
! AGTATATTTAACGTAGCTTT+CGG + chr1_4:75915684-75915703 None:intergenic 25.0%
! TTTGTAATGTGATACAAGAT+AGG + chr1_4:75916138-75916157 None:intergenic 25.0%
! AAGACATTTGCCATAATTAT+TGG - chr1_4:75916414-75916433 Msa0185570:CDS 25.0%
!!! ATTTTTTTGCTTTCTTGAGA+AGG - chr1_4:75916465-75916484 Msa0185570:CDS 25.0%
! AAAAATAAAGATTGAGAGAG+AGG + chr1_4:75916529-75916548 None:intergenic 25.0%
!!! GTTTTAATATTTTCTGATGC+AGG - chr1_4:75916615-75916634 Msa0185570:CDS 25.0%
! ATCAAAGTTTGTCAAACTTA+TGG - chr1_4:75916649-75916668 Msa0185570:CDS 25.0%
! TGGTATTTGAGAAGATAAAA+AGG + chr1_4:75916750-75916769 None:intergenic 25.0%
! AATAGCAATATAAGAAGAGA+GGG + chr1_4:75916791-75916810 None:intergenic 25.0%
! AAATAGCAATATAAGAAGAG+AGG + chr1_4:75916792-75916811 None:intergenic 25.0%
!! TTTTGCCTTTTATATTCACA+TGG + chr1_4:75916896-75916915 None:intergenic 25.0%
! ATGTGAATATAAAAGGCAAA+AGG - chr1_4:75916895-75916914 Msa0185570:CDS 25.0%
!!! TAATGTTAAGTTTTTAGGCA+TGG - chr1_4:75915315-75915334 Msa0185570:intron 25.0%
! ATTATGGAGATATGTTCTTA+GGG - chr1_4:75915566-75915585 Msa0185570:intron 25.0%
! AGTATATTTAACGTAGCTTT+CGG + chr1_4:75915684-75915703 None:intergenic 25.0%
! TTTGTAATGTGATACAAGAT+AGG + chr1_4:75916138-75916157 None:intergenic 25.0%
! AAGACATTTGCCATAATTAT+TGG - chr1_4:75916414-75916433 Msa0185570:CDS 25.0%
!!! ATTTTTTTGCTTTCTTGAGA+AGG - chr1_4:75916465-75916484 Msa0185570:CDS 25.0%
! AAAAATAAAGATTGAGAGAG+AGG + chr1_4:75916529-75916548 None:intergenic 25.0%
!!! GTTTTAATATTTTCTGATGC+AGG - chr1_4:75916615-75916634 Msa0185570:CDS 25.0%
! ATCAAAGTTTGTCAAACTTA+TGG - chr1_4:75916649-75916668 Msa0185570:CDS 25.0%
! TGGTATTTGAGAAGATAAAA+AGG + chr1_4:75916750-75916769 None:intergenic 25.0%
! AATAGCAATATAAGAAGAGA+GGG + chr1_4:75916791-75916810 None:intergenic 25.0%
! AAATAGCAATATAAGAAGAG+AGG + chr1_4:75916792-75916811 None:intergenic 25.0%
!! TTTTGCCTTTTATATTCACA+TGG + chr1_4:75916896-75916915 None:intergenic 25.0%
! ATGTGAATATAAAAGGCAAA+AGG - chr1_4:75916895-75916914 Msa0185570:CDS 25.0%
! CTCAATATGTGAATGTTTTG+TGG + chr1_4:75914914-75914933 None:intergenic 30.0%
CATATTGAGAAGCAAAGAAA+TGG - chr1_4:75914925-75914944 Msa0185570:three_prime_UTR 30.0%
!!! ACGATTGTTTTGAAGAAATG+TGG - chr1_4:75915346-75915365 Msa0185570:intron 30.0%
!!! CGATTGTTTTGAAGAAATGT+GGG - chr1_4:75915347-75915366 Msa0185570:intron 30.0%
GATTATGGAGATATGTTCTT+AGG - chr1_4:75915565-75915584 Msa0185570:intron 30.0%
TATATTTAACGTAGCTTTCG+GGG + chr1_4:75915682-75915701 None:intergenic 30.0%
GTATATTTAACGTAGCTTTC+GGG + chr1_4:75915683-75915702 None:intergenic 30.0%
!! TTTAGGTTGCTCTATCTTTA+GGG - chr1_4:75915931-75915950 Msa0185570:intron 30.0%
GAAAAGGCAAAGATAACTTA+AGG - chr1_4:75916258-75916277 Msa0185570:CDS 30.0%
TTGAGAAAAGCAATAGAAAG+TGG - chr1_4:75916293-75916312 Msa0185570:CDS 30.0%
TGAGAAAAGCAATAGAAAGT+GGG - chr1_4:75916294-75916313 Msa0185570:CDS 30.0%
!! TATTTGATTCTTTTGGTGAC+TGG - chr1_4:75916360-75916379 Msa0185570:CDS 30.0%
GAGAGAGGAAATTAAAAATG+TGG + chr1_4:75916514-75916533 None:intergenic 30.0%
TTCCAAAAGCAAATTTGCAA+TGG + chr1_4:75916714-75916733 None:intergenic 30.0%
GACATCCATGTGAATATAAA+AGG - chr1_4:75916888-75916907 Msa0185570:CDS 30.0%
TATAAAAGGCAAAAGGAAAG+AGG - chr1_4:75916902-75916921 Msa0185570:CDS 30.0%
! CTCAATATGTGAATGTTTTG+TGG + chr1_4:75914914-75914933 None:intergenic 30.0%
CATATTGAGAAGCAAAGAAA+TGG - chr1_4:75914925-75914944 Msa0185570:three_prime_UTR 30.0%
!!! ACGATTGTTTTGAAGAAATG+TGG - chr1_4:75915346-75915365 Msa0185570:intron 30.0%
!!! CGATTGTTTTGAAGAAATGT+GGG - chr1_4:75915347-75915366 Msa0185570:intron 30.0%
GATTATGGAGATATGTTCTT+AGG - chr1_4:75915565-75915584 Msa0185570:intron 30.0%
TATATTTAACGTAGCTTTCG+GGG + chr1_4:75915682-75915701 None:intergenic 30.0%
GTATATTTAACGTAGCTTTC+GGG + chr1_4:75915683-75915702 None:intergenic 30.0%
!! TTTAGGTTGCTCTATCTTTA+GGG - chr1_4:75915931-75915950 Msa0185570:intron 30.0%
GAAAAGGCAAAGATAACTTA+AGG - chr1_4:75916258-75916277 Msa0185570:CDS 30.0%
TTGAGAAAAGCAATAGAAAG+TGG - chr1_4:75916293-75916312 Msa0185570:CDS 30.0%
TGAGAAAAGCAATAGAAAGT+GGG - chr1_4:75916294-75916313 Msa0185570:CDS 30.0%
!! TATTTGATTCTTTTGGTGAC+TGG - chr1_4:75916360-75916379 Msa0185570:CDS 30.0%
GAGAGAGGAAATTAAAAATG+TGG + chr1_4:75916514-75916533 None:intergenic 30.0%
TTCCAAAAGCAAATTTGCAA+TGG + chr1_4:75916714-75916733 None:intergenic 30.0%
GACATCCATGTGAATATAAA+AGG - chr1_4:75916888-75916907 Msa0185570:CDS 30.0%
TATAAAAGGCAAAAGGAAAG+AGG - chr1_4:75916902-75916921 Msa0185570:CDS 30.0%
! ATGTGAATGTTTTGTGGTGA+GGG + chr1_4:75914908-75914927 None:intergenic 35.0%
! TATGTGAATGTTTTGTGGTG+AGG + chr1_4:75914909-75914928 None:intergenic 35.0%
GAAAGTTGAGAAGATCAAGA+GGG + chr1_4:75914972-75914991 None:intergenic 35.0%
TGAAAGTTGAGAAGATCAAG+AGG + chr1_4:75914973-75914992 None:intergenic 35.0%
GTAGGTTGCTGAGTTTATTA+GGG + chr1_4:75915101-75915120 None:intergenic 35.0%
TGTAGGTTGCTGAGTTTATT+AGG + chr1_4:75915102-75915121 None:intergenic 35.0%
TTGAGAAATGATTGTCCTTC+TGG - chr1_4:75915541-75915560 Msa0185570:intron 35.0%
TGAGAAATGATTGTCCTTCT+GGG - chr1_4:75915542-75915561 Msa0185570:intron 35.0%
!!! ATAATTTTGGCCTTACCATG+AGG + chr1_4:75915649-75915668 None:intergenic 35.0%
! TGGTGATGATTTGCCTAATA+TGG - chr1_4:75915730-75915749 Msa0185570:intron 35.0%
GGCTATCTTGAACATTGTTT+AGG - chr1_4:75915914-75915933 Msa0185570:intron 35.0%
!! GTTTAGGTTGCTCTATCTTT+AGG - chr1_4:75915930-75915949 Msa0185570:intron 35.0%
TCGTTTCTCTGTAGATGAAA+AGG - chr1_4:75916242-75916261 Msa0185570:CDS 35.0%
TTTCTTGAGAAGGATTTGTG+AGG - chr1_4:75916475-75916494 Msa0185570:CDS 35.0%
TTCTTGAGAAGGATTTGTGA+GGG - chr1_4:75916476-75916495 Msa0185570:CDS 35.0%
CAAATTTGCAATGGAGAAGA+AGG + chr1_4:75916705-75916724 None:intergenic 35.0%
!! CTCCATTGCAAATTTGCTTT+TGG - chr1_4:75916709-75916728 Msa0185570:CDS 35.0%
GGCAAGAAAAGATAAGACAT+TGG + chr1_4:75916770-75916789 None:intergenic 35.0%
TAGAAAAAGATGCACACCAT+TGG - chr1_4:75916866-75916885 Msa0185570:CDS 35.0%
ATATTCACATGGATGTCCAA+TGG + chr1_4:75916885-75916904 None:intergenic 35.0%
! ATGTGAATGTTTTGTGGTGA+GGG + chr1_4:75914908-75914927 None:intergenic 35.0%
! TATGTGAATGTTTTGTGGTG+AGG + chr1_4:75914909-75914928 None:intergenic 35.0%
GAAAGTTGAGAAGATCAAGA+GGG + chr1_4:75914972-75914991 None:intergenic 35.0%
TGAAAGTTGAGAAGATCAAG+AGG + chr1_4:75914973-75914992 None:intergenic 35.0%
GTAGGTTGCTGAGTTTATTA+GGG + chr1_4:75915101-75915120 None:intergenic 35.0%
TGTAGGTTGCTGAGTTTATT+AGG + chr1_4:75915102-75915121 None:intergenic 35.0%
TTGAGAAATGATTGTCCTTC+TGG - chr1_4:75915541-75915560 Msa0185570:intron 35.0%
TGAGAAATGATTGTCCTTCT+GGG - chr1_4:75915542-75915561 Msa0185570:intron 35.0%
!!! ATAATTTTGGCCTTACCATG+AGG + chr1_4:75915649-75915668 None:intergenic 35.0%
! TGGTGATGATTTGCCTAATA+TGG - chr1_4:75915730-75915749 Msa0185570:intron 35.0%
GGCTATCTTGAACATTGTTT+AGG - chr1_4:75915914-75915933 Msa0185570:intron 35.0%
!! GTTTAGGTTGCTCTATCTTT+AGG - chr1_4:75915930-75915949 Msa0185570:intron 35.0%
TCGTTTCTCTGTAGATGAAA+AGG - chr1_4:75916242-75916261 Msa0185570:CDS 35.0%
TTTCTTGAGAAGGATTTGTG+AGG - chr1_4:75916475-75916494 Msa0185570:CDS 35.0%
TTCTTGAGAAGGATTTGTGA+GGG - chr1_4:75916476-75916495 Msa0185570:CDS 35.0%
CAAATTTGCAATGGAGAAGA+AGG + chr1_4:75916705-75916724 None:intergenic 35.0%
!! CTCCATTGCAAATTTGCTTT+TGG - chr1_4:75916709-75916728 Msa0185570:CDS 35.0%
GGCAAGAAAAGATAAGACAT+TGG + chr1_4:75916770-75916789 None:intergenic 35.0%
TAGAAAAAGATGCACACCAT+TGG - chr1_4:75916866-75916885 Msa0185570:CDS 35.0%
ATATTCACATGGATGTCCAA+TGG + chr1_4:75916885-75916904 None:intergenic 35.0%
!! TTAGGTTGGATTCGTAGGTT+GGG + chr1_4:75915063-75915082 None:intergenic 40.0%
!! TTTAGGTTGGATTCGTAGGT+TGG + chr1_4:75915064-75915083 None:intergenic 40.0%
!! TGAGTTTAGGTTGGATTCGT+AGG + chr1_4:75915068-75915087 None:intergenic 40.0%
CTGAGTTTATTAGGGATGTG+AGG + chr1_4:75915093-75915112 None:intergenic 40.0%
GAAGTTGTTGTAGGATGTGT+AGG + chr1_4:75915119-75915138 None:intergenic 40.0%
! GATGATGGTGAAGTTGTTGT+AGG + chr1_4:75915128-75915147 None:intergenic 40.0%
!! TGTTGGCGATTTGAGTTTTG+TGG - chr1_4:75915483-75915502 Msa0185570:intron 40.0%
GTGTCAAGATTGTGTTTCAG+AGG - chr1_4:75915507-75915526 Msa0185570:intron 40.0%
GACAATCATTTCTCAACCGT+CGG + chr1_4:75915537-75915556 None:intergenic 40.0%
GAGAAATGATTGTCCTTCTG+GGG - chr1_4:75915543-75915562 Msa0185570:intron 40.0%
ATATCTCCATAATCCCCAGA+AGG + chr1_4:75915559-75915578 None:intergenic 40.0%
!! TCTTAGGGAAGTGTTATGCA+AGG - chr1_4:75915581-75915600 Msa0185570:intron 40.0%
! TGTTATGCAAGGTACTCTAC+TGG - chr1_4:75915592-75915611 Msa0185570:intron 40.0%
TACACCTCACACTATTGAAG+TGG + chr1_4:75915957-75915976 None:intergenic 40.0%
!! TTAGGTTGGATTCGTAGGTT+GGG + chr1_4:75915063-75915082 None:intergenic 40.0%
!! TTTAGGTTGGATTCGTAGGT+TGG + chr1_4:75915064-75915083 None:intergenic 40.0%
!! TGAGTTTAGGTTGGATTCGT+AGG + chr1_4:75915068-75915087 None:intergenic 40.0%
CTGAGTTTATTAGGGATGTG+AGG + chr1_4:75915093-75915112 None:intergenic 40.0%
GAAGTTGTTGTAGGATGTGT+AGG + chr1_4:75915119-75915138 None:intergenic 40.0%
! GATGATGGTGAAGTTGTTGT+AGG + chr1_4:75915128-75915147 None:intergenic 40.0%
!! TGTTGGCGATTTGAGTTTTG+TGG - chr1_4:75915483-75915502 Msa0185570:intron 40.0%
GTGTCAAGATTGTGTTTCAG+AGG - chr1_4:75915507-75915526 Msa0185570:intron 40.0%
GACAATCATTTCTCAACCGT+CGG + chr1_4:75915537-75915556 None:intergenic 40.0%
GAGAAATGATTGTCCTTCTG+GGG - chr1_4:75915543-75915562 Msa0185570:intron 40.0%
ATATCTCCATAATCCCCAGA+AGG + chr1_4:75915559-75915578 None:intergenic 40.0%
!! TCTTAGGGAAGTGTTATGCA+AGG - chr1_4:75915581-75915600 Msa0185570:intron 40.0%
! TGTTATGCAAGGTACTCTAC+TGG - chr1_4:75915592-75915611 Msa0185570:intron 40.0%
TACACCTCACACTATTGAAG+TGG + chr1_4:75915957-75915976 None:intergenic 40.0%
CTGTGGGGATGGAAAATGAA+TGG + chr1_4:75915000-75915019 None:intergenic 45.0%
! TAGGTTGGATTCGTAGGTTG+GGG + chr1_4:75915062-75915081 None:intergenic 45.0%
TGTGAGGAGTGAGTTTAGGT+TGG + chr1_4:75915077-75915096 None:intergenic 45.0%
GTTAGGGTTTGAGGAGATGA+TGG + chr1_4:75915143-75915162 None:intergenic 45.0%
AACCCTAACGACATCGTCTA+CGG - chr1_4:75915154-75915173 Msa0185570:three_prime_UTR 45.0%
TGGAAATGTCACCACGACAT+TGG + chr1_4:75915186-75915205 None:intergenic 45.0%
AAGAAATGTGGGCCTGAAGT+AGG - chr1_4:75915358-75915377 Msa0185570:intron 45.0%
AGAAATGTGGGCCTGAAGTA+GGG - chr1_4:75915359-75915378 Msa0185570:intron 45.0%
AACACAGCATCTATCGTTCC+CGG + chr1_4:75915391-75915410 None:intergenic 45.0%
GGAACGATAGATGCTGTGTT+GGG - chr1_4:75915391-75915410 Msa0185570:CDS 45.0%
!! GTTGTTTAGGGTTGGTGGTT+CGG - chr1_4:75915435-75915454 Msa0185570:CDS 45.0%
!! TTGTTTAGGGTTGGTGGTTC+GGG - chr1_4:75915436-75915455 Msa0185570:CDS 45.0%
! GATTGTCCTTCTGGGGATTA+TGG - chr1_4:75915550-75915569 Msa0185570:intron 45.0%
! TATGCAAGGTACTCTACTGG+TGG - chr1_4:75915595-75915614 Msa0185570:intron 45.0%
TTACTCCAAGCCTCATGGTA+AGG - chr1_4:75915636-75915655 Msa0185570:intron 45.0%
GCAGGTAAATCAGATCACGA+TGG - chr1_4:75916387-75916406 Msa0185570:CDS 45.0%
AGAAGGATTTGTGAGGGACA+AGG - chr1_4:75916482-75916501 Msa0185570:CDS 45.0%
GAAGGCTGAGAATTGATCAG+TGG + chr1_4:75916687-75916706 None:intergenic 45.0%
! AATGTTTTGTGGTGAGGGAC+AGG + chr1_4:75914903-75914922 None:intergenic 45.0%
CTGTGGGGATGGAAAATGAA+TGG + chr1_4:75915000-75915019 None:intergenic 45.0%
! TAGGTTGGATTCGTAGGTTG+GGG + chr1_4:75915062-75915081 None:intergenic 45.0%
TGTGAGGAGTGAGTTTAGGT+TGG + chr1_4:75915077-75915096 None:intergenic 45.0%
GTTAGGGTTTGAGGAGATGA+TGG + chr1_4:75915143-75915162 None:intergenic 45.0%
AACCCTAACGACATCGTCTA+CGG - chr1_4:75915154-75915173 Msa0185570:three_prime_UTR 45.0%
TGGAAATGTCACCACGACAT+TGG + chr1_4:75915186-75915205 None:intergenic 45.0%
AAGAAATGTGGGCCTGAAGT+AGG - chr1_4:75915358-75915377 Msa0185570:intron 45.0%
AGAAATGTGGGCCTGAAGTA+GGG - chr1_4:75915359-75915378 Msa0185570:intron 45.0%
AACACAGCATCTATCGTTCC+CGG + chr1_4:75915391-75915410 None:intergenic 45.0%
GGAACGATAGATGCTGTGTT+GGG - chr1_4:75915391-75915410 Msa0185570:CDS 45.0%
!! GTTGTTTAGGGTTGGTGGTT+CGG - chr1_4:75915435-75915454 Msa0185570:CDS 45.0%
!! TTGTTTAGGGTTGGTGGTTC+GGG - chr1_4:75915436-75915455 Msa0185570:CDS 45.0%
! GATTGTCCTTCTGGGGATTA+TGG - chr1_4:75915550-75915569 Msa0185570:intron 45.0%
! TATGCAAGGTACTCTACTGG+TGG - chr1_4:75915595-75915614 Msa0185570:intron 45.0%
TTACTCCAAGCCTCATGGTA+AGG - chr1_4:75915636-75915655 Msa0185570:intron 45.0%
GCAGGTAAATCAGATCACGA+TGG - chr1_4:75916387-75916406 Msa0185570:CDS 45.0%
AGAAGGATTTGTGAGGGACA+AGG - chr1_4:75916482-75916501 Msa0185570:CDS 45.0%
GAAGGCTGAGAATTGATCAG+TGG + chr1_4:75916687-75916706 None:intergenic 45.0%
CGTAGAGGAATGTGTCTGTG+GGG + chr1_4:75915015-75915034 None:intergenic 50.0%
CCGTAGAGGAATGTGTCTGT+GGG + chr1_4:75915016-75915035 None:intergenic 50.0%
CCCACAGACACATTCCTCTA+CGG - chr1_4:75915013-75915032 Msa0185570:three_prime_UTR 50.0%
ACCGTAGAGGAATGTGTCTG+TGG + chr1_4:75915017-75915036 None:intergenic 50.0%
ACAGACACATTCCTCTACGG+TGG - chr1_4:75915016-75915035 Msa0185570:three_prime_UTR 50.0%
CAGACACATTCCTCTACGGT+GGG - chr1_4:75915017-75915036 Msa0185570:three_prime_UTR 50.0%
GGGATGTGAGGAGTGAGTTT+AGG + chr1_4:75915081-75915100 None:intergenic 50.0%
GACGATGTCGTTAGGGTTTG+AGG + chr1_4:75915152-75915171 None:intergenic 50.0%
TGTCACCACGACATTGGTAG+AGG + chr1_4:75915180-75915199 None:intergenic 50.0%
ACACAGCATCTATCGTTCCC+GGG + chr1_4:75915390-75915409 None:intergenic 50.0%
GGGAACGATAGATGCTGTGT+TGG - chr1_4:75915390-75915409 Msa0185570:CDS 50.0%
ACGATAGATGCTGTGTTGGG+TGG - chr1_4:75915394-75915413 Msa0185570:CDS 50.0%
CGATAGATGCTGTGTTGGGT+GGG - chr1_4:75915395-75915414 Msa0185570:CDS 50.0%
!! GGGTTCAGGTGGGTTGTTTA+GGG - chr1_4:75915423-75915442 Msa0185570:CDS 50.0%
!! TCAGGTGGGTTGTTTAGGGT+TGG - chr1_4:75915427-75915446 Msa0185570:CDS 50.0%
TTCGGGTCAGTTGAAGGGAA+TGG - chr1_4:75915453-75915472 Msa0185570:CDS 50.0%
AAGGGAATGGCACAGTGTGT+TGG - chr1_4:75915466-75915485 Msa0185570:intron 50.0%
GTGTTTCAGAGGCAATCCGA+CGG - chr1_4:75915518-75915537 Msa0185570:intron 50.0%
CATGCTTACTCCAAGCCTCA+TGG - chr1_4:75915631-75915650 Msa0185570:intron 50.0%
!! TTTGGCCTTACCATGAGGCT+TGG + chr1_4:75915644-75915663 None:intergenic 50.0%
AGGGCCACTTCAATAGTGTG+AGG - chr1_4:75915950-75915969 Msa0185570:intron 50.0%
!!! CTTTTGGTGACTGGTCTTGC+AGG - chr1_4:75916369-75916388 Msa0185570:CDS 50.0%
CGTAGAGGAATGTGTCTGTG+GGG + chr1_4:75915015-75915034 None:intergenic 50.0%
CCGTAGAGGAATGTGTCTGT+GGG + chr1_4:75915016-75915035 None:intergenic 50.0%
CCCACAGACACATTCCTCTA+CGG - chr1_4:75915013-75915032 Msa0185570:three_prime_UTR 50.0%
ACCGTAGAGGAATGTGTCTG+TGG + chr1_4:75915017-75915036 None:intergenic 50.0%
ACAGACACATTCCTCTACGG+TGG - chr1_4:75915016-75915035 Msa0185570:three_prime_UTR 50.0%
CAGACACATTCCTCTACGGT+GGG - chr1_4:75915017-75915036 Msa0185570:three_prime_UTR 50.0%
GGGATGTGAGGAGTGAGTTT+AGG + chr1_4:75915081-75915100 None:intergenic 50.0%
GACGATGTCGTTAGGGTTTG+AGG + chr1_4:75915152-75915171 None:intergenic 50.0%
TGTCACCACGACATTGGTAG+AGG + chr1_4:75915180-75915199 None:intergenic 50.0%
ACACAGCATCTATCGTTCCC+GGG + chr1_4:75915390-75915409 None:intergenic 50.0%
GGGAACGATAGATGCTGTGT+TGG - chr1_4:75915390-75915409 Msa0185570:CDS 50.0%
ACGATAGATGCTGTGTTGGG+TGG - chr1_4:75915394-75915413 Msa0185570:CDS 50.0%
CGATAGATGCTGTGTTGGGT+GGG - chr1_4:75915395-75915414 Msa0185570:CDS 50.0%
!! GGGTTCAGGTGGGTTGTTTA+GGG - chr1_4:75915423-75915442 Msa0185570:CDS 50.0%
!! TCAGGTGGGTTGTTTAGGGT+TGG - chr1_4:75915427-75915446 Msa0185570:CDS 50.0%
TTCGGGTCAGTTGAAGGGAA+TGG - chr1_4:75915453-75915472 Msa0185570:CDS 50.0%
AAGGGAATGGCACAGTGTGT+TGG - chr1_4:75915466-75915485 Msa0185570:intron 50.0%
GTGTTTCAGAGGCAATCCGA+CGG - chr1_4:75915518-75915537 Msa0185570:intron 50.0%
CATGCTTACTCCAAGCCTCA+TGG - chr1_4:75915631-75915650 Msa0185570:intron 50.0%
!! TTTGGCCTTACCATGAGGCT+TGG + chr1_4:75915644-75915663 None:intergenic 50.0%
AGGGCCACTTCAATAGTGTG+AGG - chr1_4:75915950-75915969 Msa0185570:intron 50.0%
!!! CTTTTGGTGACTGGTCTTGC+AGG - chr1_4:75916369-75916388 Msa0185570:CDS 50.0%
GAGGAATGTGTCTGTGGGGA+TGG + chr1_4:75915011-75915030 None:intergenic 55.0%
GGCCGTAGACGATGTCGTTA+GGG + chr1_4:75915159-75915178 None:intergenic 55.0%
AGGCCGTAGACGATGTCGTT+AGG + chr1_4:75915160-75915179 None:intergenic 55.0%
TACGGCCTCTACCAATGTCG+TGG - chr1_4:75915172-75915191 Msa0185570:three_prime_UTR 55.0%
CACGCCAGGACATATGTCAC+CGG + chr1_4:75915251-75915270 None:intergenic 55.0%
GACATATGTCCTGGCGTGTG+CGG - chr1_4:75915253-75915272 Msa0185570:intron 55.0%
GCCTGAAGTAGGGTATGACC+CGG - chr1_4:75915369-75915388 Msa0185570:exon 55.0%
CCTGAAGTAGGGTATGACCC+GGG - chr1_4:75915370-75915389 Msa0185570:exon 55.0%
AGATGCTGTGTTGGGTGGGT+TGG - chr1_4:75915399-75915418 Msa0185570:CDS 55.0%
!! CGGGTTCAGGTGGGTTGTTT+AGG - chr1_4:75915422-75915441 Msa0185570:CDS 55.0%
!! GGTGGGTTGTTTAGGGTTGG+TGG - chr1_4:75915430-75915449 Msa0185570:CDS 55.0%
! TGGTGGTTCGGGTCAGTTGA+AGG - chr1_4:75915447-75915466 Msa0185570:CDS 55.0%
! GGTGGTTCGGGTCAGTTGAA+GGG - chr1_4:75915448-75915467 Msa0185570:CDS 55.0%
! AGGTACTCTACTGGTGGTGC+TGG - chr1_4:75915601-75915620 Msa0185570:intron 55.0%
! TACTCTACTGGTGGTGCTGG+TGG - chr1_4:75915604-75915623 Msa0185570:intron 55.0%
!! ACTCTACTGGTGGTGCTGGT+GGG - chr1_4:75915605-75915624 Msa0185570:intron 55.0%
GAGGAATGTGTCTGTGGGGA+TGG + chr1_4:75915011-75915030 None:intergenic 55.0%
GGCCGTAGACGATGTCGTTA+GGG + chr1_4:75915159-75915178 None:intergenic 55.0%
AGGCCGTAGACGATGTCGTT+AGG + chr1_4:75915160-75915179 None:intergenic 55.0%
TACGGCCTCTACCAATGTCG+TGG - chr1_4:75915172-75915191 Msa0185570:three_prime_UTR 55.0%
CACGCCAGGACATATGTCAC+CGG + chr1_4:75915251-75915270 None:intergenic 55.0%
GACATATGTCCTGGCGTGTG+CGG - chr1_4:75915253-75915272 Msa0185570:intron 55.0%
GCCTGAAGTAGGGTATGACC+CGG - chr1_4:75915369-75915388 Msa0185570:exon 55.0%
CCTGAAGTAGGGTATGACCC+GGG - chr1_4:75915370-75915389 Msa0185570:exon 55.0%
AGATGCTGTGTTGGGTGGGT+TGG - chr1_4:75915399-75915418 Msa0185570:CDS 55.0%
!! CGGGTTCAGGTGGGTTGTTT+AGG - chr1_4:75915422-75915441 Msa0185570:CDS 55.0%
!! GGTGGGTTGTTTAGGGTTGG+TGG - chr1_4:75915430-75915449 Msa0185570:CDS 55.0%
! TGGTGGTTCGGGTCAGTTGA+AGG - chr1_4:75915447-75915466 Msa0185570:CDS 55.0%
! GGTGGTTCGGGTCAGTTGAA+GGG - chr1_4:75915448-75915467 Msa0185570:CDS 55.0%
! AGGTACTCTACTGGTGGTGC+TGG - chr1_4:75915601-75915620 Msa0185570:intron 55.0%
! TACTCTACTGGTGGTGCTGG+TGG - chr1_4:75915604-75915623 Msa0185570:intron 55.0%
!! ACTCTACTGGTGGTGCTGGT+GGG - chr1_4:75915605-75915624 Msa0185570:intron 55.0%
CTTGTGTGCACCCACCGTAG+AGG + chr1_4:75915030-75915049 None:intergenic 60.0%
GCAATGCAGGAGGAGCAGTC+TGG + chr1_4:75915211-75915230 None:intergenic 60.0%
TGAGACAGCGCGTGCAATGC+AGG + chr1_4:75915224-75915243 None:intergenic 60.0%
! CGCACCGGTGACATATGTCC+TGG - chr1_4:75915244-75915263 Msa0185570:intron 60.0%
ATATGTCCTGGCGTGTGCGG+CGG - chr1_4:75915256-75915275 Msa0185570:intron 60.0%
GGCGGCGTAGTGCAACTAGA+AGG - chr1_4:75915274-75915293 Msa0185570:intron 60.0%
CCCGGGTCATACCCTACTTC+AGG + chr1_4:75915373-75915392 None:intergenic 60.0%
!! TGCTGTGTTGGGTGGGTTGG+CGG - chr1_4:75915402-75915421 Msa0185570:CDS 60.0%
!! CTCTACTGGTGGTGCTGGTG+GGG - chr1_4:75915606-75915625 Msa0185570:intron 60.0%
CTTGTGTGCACCCACCGTAG+AGG + chr1_4:75915030-75915049 None:intergenic 60.0%
GCAATGCAGGAGGAGCAGTC+TGG + chr1_4:75915211-75915230 None:intergenic 60.0%
TGAGACAGCGCGTGCAATGC+AGG + chr1_4:75915224-75915243 None:intergenic 60.0%
! CGCACCGGTGACATATGTCC+TGG - chr1_4:75915244-75915263 Msa0185570:intron 60.0%
ATATGTCCTGGCGTGTGCGG+CGG - chr1_4:75915256-75915275 Msa0185570:intron 60.0%
GGCGGCGTAGTGCAACTAGA+AGG - chr1_4:75915274-75915293 Msa0185570:intron 60.0%
CCCGGGTCATACCCTACTTC+AGG + chr1_4:75915373-75915392 None:intergenic 60.0%
!! TGCTGTGTTGGGTGGGTTGG+CGG - chr1_4:75915402-75915421 Msa0185570:CDS 60.0%
!! CTCTACTGGTGGTGCTGGTG+GGG - chr1_4:75915606-75915625 Msa0185570:intron 60.0%
GCAGGAGGAGCAGTCTGGCA+TGG + chr1_4:75915206-75915225 None:intergenic 65.0%
GACAGCGCGTGCAATGCAGG+AGG + chr1_4:75915221-75915240 None:intergenic 65.0%
!! GCTGTGTTGGGTGGGTTGGC+GGG - chr1_4:75915403-75915422 Msa0185570:CDS 65.0%
!! TTGGGTGGGTTGGCGGGTTC+AGG - chr1_4:75915409-75915428 Msa0185570:CDS 65.0%
!! GTGGGTTGGCGGGTTCAGGT+GGG - chr1_4:75915413-75915432 Msa0185570:CDS 65.0%
GCAGGAGGAGCAGTCTGGCA+TGG + chr1_4:75915206-75915225 None:intergenic 65.0%
GACAGCGCGTGCAATGCAGG+AGG + chr1_4:75915221-75915240 None:intergenic 65.0%
!! GCTGTGTTGGGTGGGTTGGC+GGG - chr1_4:75915403-75915422 Msa0185570:CDS 65.0%
!! TTGGGTGGGTTGGCGGGTTC+AGG - chr1_4:75915409-75915428 Msa0185570:CDS 65.0%
!! GTGGGTTGGCGGGTTCAGGT+GGG - chr1_4:75915413-75915432 Msa0185570:CDS 65.0%
GCACGCGCTGTCTCACGCAC+CGG - chr1_4:75915229-75915248 Msa0185570:intron 70.0%
!! GGTGGGTTGGCGGGTTCAGG+TGG - chr1_4:75915412-75915431 Msa0185570:CDS 70.0%
GCACGCGCTGTCTCACGCAC+CGG - chr1_4:75915229-75915248 Msa0185570:intron 70.0%
!! GGTGGGTTGGCGGGTTCAGG+TGG - chr1_4:75915412-75915431 Msa0185570:CDS 70.0%
ACTACGCCGCCGCACACGCC+AGG + chr1_4:75915265-75915284 None:intergenic 75.0%
ACTACGCCGCCGCACACGCC+AGG + chr1_4:75915265-75915284 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 75914901 75916969 75914901 ID=Msa0185570;Name=Msa0185570
chr1_4 mRNA 75914901 75916969 75914901 ID=Msa0185570-mRNA-1;Parent=Msa0185570;Name=Msa0185570-mRNA-1;_AED=0.01;_eAED=0.01;_QI=43|1|1|1|0.5|0.33|3|354|266
chr1_4 exon 75914901 75915233 75914901 ID=Msa0185570-mRNA-1:exon:25877;Parent=Msa0185570-mRNA-1
chr1_4 exon 75915367 75915479 75915367 ID=Msa0185570-mRNA-1:exon:25876;Parent=Msa0185570-mRNA-1
chr1_4 exon 75916218 75916969 75916218 ID=Msa0185570-mRNA-1:exon:25875;Parent=Msa0185570-mRNA-1
chr1_4 five_prime_UTR 75916927 75916969 75916927 ID=Msa0185570-mRNA-1:five_prime_utr;Parent=Msa0185570-mRNA-1
chr1_4 CDS 75916218 75916926 75916218 ID=Msa0185570-mRNA-1:cds;Parent=Msa0185570-mRNA-1
chr1_4 CDS 75915388 75915479 75915388 ID=Msa0185570-mRNA-1:cds;Parent=Msa0185570-mRNA-1
chr1_4 three_prime_UTR 75915367 75915387 75915367 ID=Msa0185570-mRNA-1:three_prime_utr;Parent=Msa0185570-mRNA-1
chr1_4 three_prime_UTR 75914901 75915233 75914901 ID=Msa0185570-mRNA-1:three_prime_utr;Parent=Msa0185570-mRNA-1
Gene Sequence

>Msa0185570

ATGGTCAAAACAAAAAAATTTCTCTCCCTCTTGATCTTCTCAACTTTCATTCTCCATTCATTTTCCATCCCCACAGACACATTCCTCTACGGTGGGTGCACACAAGAAAAATACACCCCAACCTACGAATCCAACCTAAACTCACTCCTCACATCCCTAATAAACTCAGCAACCTACACATCCTACAACAACTTCACCATCATCTCCTCAAACCCTAACGACATCGTCTACGGCCTCTACCAATGTCGTGGTGACATTTCCATGCCAGACTGCTCCTCCTGCATTGCACGCGCTGTCTCACGCACCGGTGACATATGTCCTGGCGTGTGCGGCGGCGTAGTGCAACTAGAAGGATGCTATGTGAAATATGATAATGTTAAGTTTTTAGGCATGGAAGATAAAACGATTGTTTTGAAGAAATGTGGGCCTGAAGTAGGGTATGACCCGGGAACGATAGATGCTGTGTTGGGTGGGTTGGCGGGTTCAGGTGGGTTGTTTAGGGTTGGTGGTTCGGGTCAGTTGAAGGGAATGGCACAGTGTGTTGGCGATTTGAGTTTTGTGGAGTGTCAAGATTGTGTTTCAGAGGCAATCCGACGGTTGAGAAATGATTGTCCTTCTGGGGATTATGGAGATATGTTCTTAGGGAAGTGTTATGCAAGGTACTCTACTGGTGGTGCTGGTGGGGCACATGCTTACTCCAAGCCTCATGGTAAATCAGATCACGATGGTGAGAAGACATTTGCCATAATTATTGGATTATTAGCAGTTGTTGCTATACTTATTATTTTTTTGCTTTCTTGA
Protein sequence

>Msa0185570

MVKTKKFLSLLIFSTFILHSFSIPTDTFLYGGCTQEKYTPTYESNLNSLLTSLINSATYTSYNNFTIISSNPNDIVYGLYQCRGDISMPDCSSCIARAVSRTGDICPGVCGGVVQLEGCYVKYDNVKFLGMEDKTIVLKKCGPEVGYDPGTIDAVLGGLAGSGGLFRVGGSGQLKGMAQCVGDLSFVECQDCVSEAIRRLRNDCPSGDYGDMFLGKCYARYSTGGAGGAHAYSKPHGKSDHDGEKTFAIIIGLLAVVAILIIFLLS*