AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0415790

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0415790 MtrunA17_Chr3g0110311 96.014 276 11 0 1 276 1 276 0.0 543
Msa0415790 MtrunA17_Chr5g0434531 65.125 281 90 3 1 276 1 278 1.66e-121 348
Msa0415790 MtrunA17_Chr8g0391511 48.263 259 125 3 25 274 29 287 2.06e-84 254
Msa0415790 MtrunA17_Chr7g0230381 42.366 262 134 10 6 256 16 271 1.64e-56 182
Msa0415790 MtrunA17_Chr7g0262011 28.417 278 188 4 1 270 76 350 8.00e-32 120
Msa0415790 MtrunA17_Chr1g0168311 30.142 282 174 7 12 272 8 287 3.22e-24 99.0
Msa0415790 MtrunA17_Chr2g0323011 32.474 194 117 3 42 221 45 238 7.93e-24 97.1
Msa0415790 MtrunA17_Chr1g0186151 29.545 264 164 4 27 270 32 293 1.02e-23 98.2
Msa0415790 MtrunA17_Chr2g0322981 29.661 236 148 6 4 221 3 238 2.25e-23 95.5
Msa0415790 MtrunA17_Chr1g0190321 27.049 244 158 10 26 252 31 271 2.06e-22 94.0
Msa0415790 MtrunA17_Chr1g0206361 27.099 262 166 8 32 269 40 300 2.11e-19 87.8
Msa0415790 MtrunA17_Chr1g0205771 24.800 250 167 4 41 271 56 303 5.79e-19 86.7
Msa0415790 MtrunA17_Chr1g0206331 28.980 245 144 9 5 223 8 248 9.53e-19 85.9
Msa0415790 MtrunA17_Chr8g0354351 23.077 286 192 6 7 268 9 290 2.15e-18 84.7
Msa0415790 MtrunA17_Chr7g0234231 27.461 193 124 3 44 222 42 232 2.63e-17 79.3
Msa0415790 MtrunA17_Chr6g0474811 29.339 242 142 7 7 222 8 246 3.70e-17 81.3
Msa0415790 MtrunA17_Chr1g0206351 29.302 215 132 4 27 221 33 247 4.64e-17 80.9
Msa0415790 MtrunA17_Chr7g0226901 29.333 225 143 8 10 223 13 232 6.16e-17 78.6
Msa0415790 MtrunA17_Chr6g0475001 28.750 240 147 8 6 221 5 244 8.70e-17 80.1
Msa0415790 MtrunA17_Chr6g0474971 31.343 201 117 6 41 221 38 237 9.80e-17 78.6
Msa0415790 MtrunA17_Chr6g0474871 29.412 238 142 6 7 221 8 242 1.18e-16 79.7
Msa0415790 MtrunA17_Chr6g0474901 29.353 201 121 5 41 221 38 237 1.92e-16 79.3
Msa0415790 MtrunA17_Chr3g0081031 23.636 275 177 8 4 247 9 281 2.12e-16 79.0
Msa0415790 MtrunA17_Chr3g0081011 25.500 200 137 2 34 221 39 238 2.36e-16 79.0
Msa0415790 MtrunA17_Chr3g0081001 26.866 201 134 2 34 221 39 239 2.48e-16 78.6
Msa0415790 MtrunA17_Chr6g0475091 29.000 200 123 4 41 221 54 253 6.86e-16 77.4
Msa0415790 MtrunA17_Chr6g0475201 29.167 240 147 6 4 221 5 243 1.11e-15 77.0
Msa0415790 MtrunA17_Chr3g0081051 26.866 201 125 4 41 223 40 236 2.59e-15 73.9
Msa0415790 MtrunA17_Chr5g0428531 26.582 237 147 7 10 223 11 243 3.12e-15 74.3
Msa0415790 MtrunA17_Chr8g0354341 25.123 203 137 2 34 221 37 239 4.70e-15 73.2
Msa0415790 MtrunA17_Chr8g0354421 28.634 227 135 7 1 204 23 245 8.83e-15 74.3
Msa0415790 MtrunA17_Chr6g0474861 29.016 193 112 5 27 199 27 214 9.04e-15 73.9
Msa0415790 MtrunA17_Chr5g0428571 26.263 198 130 3 41 223 45 241 2.23e-14 72.8
Msa0415790 MtrunA17_Chr5g0428591 25.217 230 154 4 10 222 11 239 5.39e-14 70.5
Msa0415790 MtrunA17_Chr5g0394001 26.939 245 159 5 38 263 41 284 5.49e-14 71.6
Msa0415790 MtrunA17_Chr6g0475121 28.729 181 109 4 60 221 65 244 1.19e-13 70.9
Msa0415790 MtrunA17_Chr8g0354411 28.061 196 122 4 28 204 29 224 2.01e-13 69.3
Msa0415790 MtrunA17_Chr2g0280381 25.620 242 150 8 2 221 1 234 4.33e-13 67.8
Msa0415790 MtrunA17_Chr1g0206201 26.400 250 158 7 7 230 7 256 4.68e-13 67.8
Msa0415790 MtrunA17_Chr1g0206231 25.869 259 147 8 42 264 52 301 5.76e-13 68.6
Msa0415790 MtrunA17_Chr4g0058891 31.210 157 94 7 76 223 82 233 8.57e-13 68.2
Msa0415790 MtrunA17_Chr1g0206291 26.778 239 148 9 7 221 23 258 1.18e-12 67.8
Msa0415790 MtrunA17_Chr3g0082951 36.275 102 61 1 28 125 116 217 1.34e-12 65.5
Msa0415790 MtrunA17_Chr8g0354281 24.000 275 180 8 28 273 29 303 2.63e-12 66.6
Msa0415790 MtrunA17_Chr1g0154311 24.436 266 162 9 41 270 49 311 2.86e-12 66.6
Msa0415790 MtrunA17_Chr3g0109411 24.186 215 146 3 24 222 25 238 3.03e-12 66.6
Msa0415790 MtrunA17_Chr2g0280391 24.852 169 113 3 41 197 50 216 6.02e-12 64.7
Msa0415790 MtrunA17_Chr8g0354431 24.554 224 149 6 1 204 1 224 9.34e-12 65.1
Msa0415790 MtrunA17_Chr8g0347571 25.989 177 122 2 55 222 61 237 4.67e-11 63.2
Msa0415790 MtrunA17_Chr6g0475111 22.632 190 122 4 28 197 286 470 4.69e-11 63.2
Msa0415790 MtrunA17_Chr6g0475111 26.667 240 155 5 3 222 9 247 5.19e-11 63.2
Msa0415790 MtrunA17_Chr8g0354441 23.490 298 199 8 1 269 6 303 7.85e-11 62.4
Msa0415790 MtrunA17_Chr5g0394021 24.664 223 148 5 74 276 80 302 8.78e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0415790 AT5G37660.1 59.364 283 105 5 1 276 9 288 1.12e-107 314
Msa0415790 AT5G37660.2 59.220 282 105 5 1 275 9 287 9.74e-107 311
Msa0415790 AT2G01660.3 53.633 289 119 10 1 276 1 287 1.46e-93 278
Msa0415790 AT2G01660.1 53.521 284 118 9 1 272 1 282 7.01e-93 276
Msa0415790 AT2G01660.2 54.435 248 98 8 1 238 1 243 1.57e-82 249
Msa0415790 AT1G70690.1 40.614 293 150 7 1 272 1 290 3.02e-67 211
Msa0415790 AT3G60720.1 39.442 251 138 6 28 268 29 275 6.45e-51 169
Msa0415790 AT3G60720.3 39.442 251 138 6 28 268 29 275 7.22e-51 169
Msa0415790 AT3G60720.2 40.865 208 113 4 28 225 29 236 6.06e-44 149
Msa0415790 AT5G43980.1 24.906 265 175 5 27 268 27 290 3.27e-20 88.6
Msa0415790 AT1G04520.1 26.165 279 178 7 17 270 24 299 1.85e-19 86.7
Msa0415790 AT5G48540.1 30.052 193 119 3 45 221 43 235 3.34e-19 85.1
Msa0415790 AT2G33330.1 27.046 281 184 7 10 270 17 296 3.93e-19 85.5
Msa0415790 AT3G22060.1 29.767 215 131 5 25 221 31 243 1.09e-17 80.9
Msa0415790 AT3G58310.1 28.692 237 144 9 8 222 16 249 2.24e-15 74.3
Msa0415790 AT1G63550.1 27.434 226 134 6 19 224 31 246 2.45e-15 75.1
Msa0415790 AT1G63580.1 27.138 269 169 8 8 254 7 270 2.73e-15 74.3
Msa0415790 AT3G21990.1 27.459 244 143 11 8 222 11 249 5.31e-15 73.2
Msa0415790 AT4G20570.1 26.250 240 151 7 8 222 25 263 6.08e-15 73.6
Msa0415790 AT4G20560.1 26.250 240 151 7 8 222 25 263 6.08e-15 73.6
Msa0415790 AT4G20540.1 26.250 240 151 7 8 222 25 263 6.08e-15 73.6
Msa0415790 AT4G20645.1 26.250 240 151 7 8 222 25 263 6.08e-15 73.6
Msa0415790 AT4G20530.1 26.250 240 151 7 8 222 25 263 6.08e-15 73.6
Msa0415790 AT4G20550.1 26.250 240 151 7 8 222 25 263 6.08e-15 73.6
Msa0415790 AT4G20640.1 26.250 240 151 7 8 222 11 249 6.73e-15 73.2
Msa0415790 AT4G20630.1 26.250 240 151 7 8 222 11 249 6.73e-15 73.2
Msa0415790 AT4G20580.1 26.250 240 151 7 8 222 11 249 6.73e-15 73.2
Msa0415790 AT4G20600.1 26.250 240 151 7 8 222 11 249 6.73e-15 73.2
Msa0415790 AT4G20620.1 26.250 240 151 7 8 222 11 249 6.73e-15 73.2
Msa0415790 AT4G20610.1 26.250 240 151 7 8 222 11 249 6.73e-15 73.2
Msa0415790 AT4G20590.1 26.250 240 151 7 8 222 11 249 6.73e-15 73.2
Msa0415790 AT4G20670.1 26.250 240 151 7 8 222 11 249 9.02e-15 72.8
Msa0415790 AT1G61750.1 26.697 221 128 7 27 221 28 240 1.30e-14 73.2
Msa0415790 AT3G22010.1 26.432 227 132 9 25 222 36 256 1.94e-13 68.9
Msa0415790 AT4G05200.2 26.050 238 148 7 9 221 26 260 1.97e-13 70.5
Msa0415790 AT4G05200.1 26.050 238 148 7 9 221 8 242 2.12e-13 70.5
Msa0415790 AT5G41300.1 21.379 290 198 5 1 263 1 287 6.01e-13 67.8
Msa0415790 AT1G63600.1 26.829 205 125 4 39 221 50 251 1.51e-12 67.0
Msa0415790 AT4G23130.3 28.571 196 121 5 42 221 46 238 5.35e-12 66.2
Msa0415790 AT4G23130.1 28.571 196 121 5 42 221 46 238 5.77e-12 66.2
Msa0415790 AT4G23130.2 28.571 196 121 5 42 221 46 238 6.06e-12 66.2
Msa0415790 AT5G41290.1 23.265 245 164 6 1 223 1 243 6.87e-12 64.7
Msa0415790 AT4G23280.1 28.037 214 129 7 28 221 28 236 1.14e-11 65.1
Msa0415790 AT1G63570.3 27.907 215 133 6 29 223 29 241 1.18e-11 64.3
Msa0415790 AT1G63570.1 27.907 215 133 6 29 223 29 241 1.18e-11 64.3
Msa0415790 AT4G23280.2 28.037 214 129 7 28 221 28 236 1.19e-11 65.1
Msa0415790 AT1G63570.2 27.907 215 133 6 29 223 82 294 1.34e-11 64.3
Msa0415790 AT4G23280.3 28.037 214 129 7 28 221 28 236 1.36e-11 65.1
Msa0415790 AT3G21970.1 27.500 240 134 10 8 216 12 242 3.05e-11 62.8

Find 109 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGACATTTGCCATAATTAT+TGG 0.167670 3_2:-62241726 Msa0415790:CDS
TGTAGGTTGCTGAGTTTATT+AGG 0.179076 3_2:+62243041 None:intergenic
CTCCATTGCAAATTTGCTTT+TGG 0.183335 3_2:-62241430 Msa0415790:three_prime_UTR
GATTATGGAGATATGTTCTT+AGG 0.204730 3_2:-62242575 Msa0415790:CDS
GATTGTCCTTCTGGGGATTA+TGG 0.218428 3_2:-62242590 Msa0415790:CDS
CGGGTTCAGGTGGGTTGTTT+AGG 0.228798 3_2:-62242718 Msa0415790:CDS
ATCAAAGTTTGTCAAACTTA+TGG 0.233696 3_2:-62241490 Msa0415790:three_prime_UTR
TTGAGAAATGATTGTCCTTC+TGG 0.234841 3_2:-62242599 Msa0415790:CDS
GACATCCATGTGAATATAAA+AGG 0.243532 3_2:-62241251 Msa0415790:three_prime_UTR
TTGTTTAGGGTTGGTGGTTC+GGG 0.272429 3_2:-62242704 Msa0415790:CDS
TTGGGTGGGTTGGCGGGTTC+AGG 0.279854 3_2:-62242731 Msa0415790:CDS
TGCTAATAATCCAATAATTA+TGG 0.281272 3_2:+62241716 None:intergenic
GGGTTCAGGTGGGTTGTTTA+GGG 0.285383 3_2:-62242717 Msa0415790:CDS
GGGATGTGAGGAGTGAGTTT+AGG 0.299474 3_2:+62243062 None:intergenic
TGGTATTTGAGAAGATAAAA+AGG 0.304797 3_2:+62241392 None:intergenic
GGTGGGTTGGCGGGTTCAGG+TGG 0.311303 3_2:-62242728 Msa0415790:CDS
GTTGTTTAGGGTTGGTGGTT+CGG 0.315244 3_2:-62242705 Msa0415790:CDS
ACTCTACTGGTGGTGCTGGT+GGG 0.348191 3_2:-62242535 Msa0415790:CDS
GACGATGTCGTTAGGGTTTG+AGG 0.353702 3_2:+62242991 None:intergenic
CTCTACTGGTGGTGCTGGTG+GGG 0.370242 3_2:-62242534 Msa0415790:CDS
TTAGGTTGGATTCGTAGGTT+GGG 0.379852 3_2:+62243080 None:intergenic
TTTAGGTTGGATTCGTAGGT+TGG 0.384495 3_2:+62243079 None:intergenic
TACTCTACTGGTGGTGCTGG+TGG 0.391074 3_2:-62242536 Msa0415790:CDS
GGTGGGTTGTTTAGGGTTGG+TGG 0.391830 3_2:-62242710 Msa0415790:CDS
TGCTGTGTTGGGTGGGTTGG+CGG 0.395709 3_2:-62242738 Msa0415790:CDS
GCTGTGTTGGGTGGGTTGGC+GGG 0.402006 3_2:-62242737 Msa0415790:CDS
AGGCCGTAGACGATGTCGTT+AGG 0.405035 3_2:+62242983 None:intergenic
TGGTGGTTCGGGTCAGTTGA+AGG 0.409087 3_2:-62242693 Msa0415790:CDS
GTAGGTTGCTGAGTTTATTA+GGG 0.412170 3_2:+62243042 None:intergenic
TCAGGTGGGTTGTTTAGGGT+TGG 0.416015 3_2:-62242713 Msa0415790:CDS
CCCGGGTCATACCCTACTTC+AGG 0.420966 3_2:+62242770 None:intergenic
TGAGAAATGATTGTCCTTCT+GGG 0.421310 3_2:-62242598 Msa0415790:CDS
TGAAAGTTGAGAAGATCAAG+AGG 0.435685 3_2:+62243170 None:intergenic
ATTATGGAGATATGTTCTTA+GGG 0.446228 3_2:-62242574 Msa0415790:CDS
TGAGACAGCGCGTGCAATGC+AGG 0.450074 3_2:+62242919 None:intergenic
TGTGAGGAGTGAGTTTAGGT+TGG 0.450370 3_2:+62243066 None:intergenic
AAGAAATGTGGGCCTGAAGT+AGG 0.455715 3_2:-62242782 Msa0415790:CDS
AGATGCTGTGTTGGGTGGGT+TGG 0.456176 3_2:-62242741 Msa0415790:CDS
GGCCGTAGACGATGTCGTTA+GGG 0.457634 3_2:+62242984 None:intergenic
AACACAGCATCTATCGTTCC+CGG 0.461385 3_2:+62242752 None:intergenic
CATATTGAGAAGCAAAGAAA+TGG 0.466949 3_2:-62243215 Msa0415790:exon
TGAGTTTAGGTTGGATTCGT+AGG 0.468195 3_2:+62243075 None:intergenic
TTTGGCCTTACCATGAGGCT+TGG 0.468981 3_2:+62242499 None:intergenic
CAAATTTGCAATGGAGAAGA+AGG 0.472499 3_2:+62241437 None:intergenic
GATGATGGTGAAGTTGTTGT+AGG 0.488958 3_2:+62243015 None:intergenic
TAGGTTGGATTCGTAGGTTG+GGG 0.494696 3_2:+62243081 None:intergenic
AACCCTAACGACATCGTCTA+CGG 0.495402 3_2:-62242986 Msa0415790:CDS
ACGATAGATGCTGTGTTGGG+TGG 0.499063 3_2:-62242746 Msa0415790:CDS
GCAATGCAGGAGGAGCAGTC+TGG 0.502669 3_2:+62242932 None:intergenic
TTCCAAAAGCAAATTTGCAA+TGG 0.509675 3_2:+62241428 None:intergenic
AGGTACTCTACTGGTGGTGC+TGG 0.511132 3_2:-62242539 Msa0415790:CDS
GAAGTTGTTGTAGGATGTGT+AGG 0.519106 3_2:+62243024 None:intergenic
GGTGGTTCGGGTCAGTTGAA+GGG 0.521698 3_2:-62242692 Msa0415790:CDS
CTGTGGGGATGGAAAATGAA+TGG 0.522591 3_2:+62243143 None:intergenic
ACAACTTTGTTGAGTGGGGA+AGG 0.522805 3_2:+62241179 None:intergenic
CTGAGTTTATTAGGGATGTG+AGG 0.524550 3_2:+62243050 None:intergenic
ATGTGAATATAAAAGGCAAA+AGG 0.530706 3_2:-62241244 Msa0415790:three_prime_UTR
AATAGCAATATAAGAAGAGA+GGG 0.531320 3_2:+62241351 None:intergenic
GGCGGCGTAGTGCAACTAGA+AGG 0.532882 3_2:-62242866 Msa0415790:CDS
GAGGAATGTGTCTGTGGGGA+TGG 0.535481 3_2:+62243132 None:intergenic
CGCACCGGTGACATATGTCC+TGG 0.536550 3_2:-62242896 Msa0415790:CDS
ACTACGCCGCCGCACACGCC+AGG 0.536702 3_2:+62242878 None:intergenic
AGAAATGTGGGCCTGAAGTA+GGG 0.540842 3_2:-62242781 Msa0415790:CDS
GACAATCATTTCTCAACCGT+CGG 0.542438 3_2:+62242606 None:intergenic
GGAACGATAGATGCTGTGTT+GGG 0.547252 3_2:-62242749 Msa0415790:CDS
CAACTTTGTTGAGTGGGGAA+GGG 0.549838 3_2:+62241180 None:intergenic
TATAAAAGGCAAAAGGAAAG+AGG 0.550930 3_2:-62241237 Msa0415790:three_prime_UTR
TGTTATGCAAGGTACTCTAC+TGG 0.554321 3_2:-62242548 Msa0415790:CDS
GTTAGGGTTTGAGGAGATGA+TGG 0.555268 3_2:+62243000 None:intergenic
GTGGGTTGGCGGGTTCAGGT+GGG 0.556632 3_2:-62242727 Msa0415790:CDS
CGATAGATGCTGTGTTGGGT+GGG 0.557400 3_2:-62242745 Msa0415790:CDS
ATATTCACATGGATGTCCAA+TGG 0.558742 3_2:+62241257 None:intergenic
TGGAAATGTCACCACGACAT+TGG 0.567004 3_2:+62242957 None:intergenic
TTCTTGAGAAGGATTTGTGA+GGG 0.570265 3_2:-62241663 Msa0415790:CDS
GCAGGAGGAGCAGTCTGGCA+TGG 0.570950 3_2:+62242937 None:intergenic
TGTCACCACGACATTGGTAG+AGG 0.571287 3_2:+62242963 None:intergenic
GTGTCAAGATTGTGTTTCAG+AGG 0.572991 3_2:-62242633 Msa0415790:CDS
GCCTGAAGTAGGGTATGACC+CGG 0.573127 3_2:-62242771 Msa0415790:CDS
TTCGGGTCAGTTGAAGGGAA+TGG 0.573592 3_2:-62242687 Msa0415790:CDS
AGAAGGATTTGTGAGGGACA+AGG 0.574299 3_2:-62241657 Msa0415790:intron
GAGAAATGATTGTCCTTCTG+GGG 0.574534 3_2:-62242597 Msa0415790:CDS
CATGCTTACTCCAAGCCTCA+TGG 0.577319 3_2:-62242509 Msa0415790:intron
CCGTAGAGGAATGTGTCTGT+GGG 0.581627 3_2:+62243127 None:intergenic
ACCGTAGAGGAATGTGTCTG+TGG 0.584034 3_2:+62243126 None:intergenic
GCACGCGCTGTCTCACGCAC+CGG 0.588396 3_2:-62242911 Msa0415790:CDS
CCCACAGACACATTCCTCTA+CGG 0.588964 3_2:-62243127 Msa0415790:CDS
GGGAACGATAGATGCTGTGT+TGG 0.602336 3_2:-62242750 Msa0415790:CDS
ACACAGCATCTATCGTTCCC+GGG 0.603589 3_2:+62242753 None:intergenic
AAATAGCAATATAAGAAGAG+AGG 0.603886 3_2:+62241350 None:intergenic
GAAAGTTGAGAAGATCAAGA+GGG 0.611900 3_2:+62243171 None:intergenic
GGCAAGAAAAGATAAGACAT+TGG 0.612310 3_2:+62241372 None:intergenic
CTTGTGTGCACCCACCGTAG+AGG 0.614149 3_2:+62243113 None:intergenic
AAGGGAATGGCACAGTGTGT+TGG 0.615028 3_2:-62242674 Msa0415790:CDS
TACGGCCTCTACCAATGTCG+TGG 0.620996 3_2:-62242968 Msa0415790:CDS
ATATGTCCTGGCGTGTGCGG+CGG 0.627188 3_2:-62242884 Msa0415790:CDS
GTGTTTCAGAGGCAATCCGA+CGG 0.633404 3_2:-62242622 Msa0415790:CDS
GACAGCGCGTGCAATGCAGG+AGG 0.641294 3_2:+62242922 None:intergenic
CAGACACATTCCTCTACGGT+GGG 0.641339 3_2:-62243123 Msa0415790:CDS
TTTCTTGAGAAGGATTTGTG+AGG 0.642073 3_2:-62241664 Msa0415790:CDS
TCTTAGGGAAGTGTTATGCA+AGG 0.643121 3_2:-62242559 Msa0415790:CDS
ACAGACACATTCCTCTACGG+TGG 0.643716 3_2:-62243124 Msa0415790:CDS
CACGCCAGGACATATGTCAC+CGG 0.653459 3_2:+62242892 None:intergenic
ATATCTCCATAATCCCCAGA+AGG 0.659310 3_2:+62242584 None:intergenic
TATGCAAGGTACTCTACTGG+TGG 0.668750 3_2:-62242545 Msa0415790:CDS
GACATATGTCCTGGCGTGTG+CGG 0.669580 3_2:-62242887 Msa0415790:CDS
GAAGGCTGAGAATTGATCAG+TGG 0.681543 3_2:+62241455 None:intergenic
CCTGAAGTAGGGTATGACCC+GGG 0.716639 3_2:-62242770 Msa0415790:CDS
CGTAGAGGAATGTGTCTGTG+GGG 0.745210 3_2:+62243128 None:intergenic
GCAGGTAAATCAGATCACGA+TGG 0.755003 3_2:-62241753 Msa0415790:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATTCTTTTAGTTTTAA+TGG + chr3_2:62241999-62242018 None:intergenic 10.0%
!!! CATTTTTTAATTTAAATTGA+TGG - chr3_2:62242403-62242422 Msa0415790:intron 10.0%
!! AGAAAATATTAAAACAAATA+TGG + chr3_2:62242902-62242921 None:intergenic 10.0%
!!! AAATATTCTTTTAGTTTTAA+TGG + chr3_2:62241999-62242018 None:intergenic 10.0%
!!! CATTTTTTAATTTAAATTGA+TGG - chr3_2:62242403-62242422 Msa0415790:intron 10.0%
!! AGAAAATATTAAAACAAATA+TGG + chr3_2:62242902-62242921 None:intergenic 10.0%
!!! TATGATAATGTTAAGTTTTT+AGG - chr3_2:62241601-62241620 Msa0415790:intron 15.0%
!!! GGGAAAAATAATAATAATTT+TGG + chr3_2:62241953-62241972 None:intergenic 15.0%
!!! AAAACTAAAAGAATATTTTG+TGG - chr3_2:62242001-62242020 Msa0415790:intron 15.0%
!!! TATGATAATGTTAAGTTTTT+AGG - chr3_2:62241601-62241620 Msa0415790:intron 15.0%
!!! GGGAAAAATAATAATAATTT+TGG + chr3_2:62241953-62241972 None:intergenic 15.0%
!!! AAAACTAAAAGAATATTTTG+TGG - chr3_2:62242001-62242020 Msa0415790:intron 15.0%
!! ATTCTTCAAAAAACCATATT+AGG + chr3_2:62242037-62242056 None:intergenic 20.0%
!!! TTTTTGTGTTTAATGTTGTT+TGG - chr3_2:62242056-62242075 Msa0415790:intron 20.0%
!!! TTTTGTGTTTAATGTTGTTT+GGG - chr3_2:62242057-62242076 Msa0415790:intron 20.0%
!! AATCTATGAATATCTATTTG+TGG - chr3_2:62242130-62242149 Msa0415790:intron 20.0%
!! TAGAAAAGAATGTAAATATG+AGG - chr3_2:62242184-62242203 Msa0415790:intron 20.0%
!!! AATACATGTGATTTTTTCAA+AGG - chr3_2:62242459-62242478 Msa0415790:intron 20.0%
!!! GCTAATTTATTTGATTCTTT+TGG - chr3_2:62242644-62242663 Msa0415790:CDS 20.0%
!! TGCTAATAATCCAATAATTA+TGG + chr3_2:62242718-62242737 None:intergenic 20.0%
!! AAACAAATATGGAATCATTT+AGG + chr3_2:62242891-62242910 None:intergenic 20.0%
!! GTTGAGAAAAATAGAATATT+TGG + chr3_2:62243232-62243251 None:intergenic 20.0%
!! ATTCTTCAAAAAACCATATT+AGG + chr3_2:62242037-62242056 None:intergenic 20.0%
!!! TTTTTGTGTTTAATGTTGTT+TGG - chr3_2:62242056-62242075 Msa0415790:intron 20.0%
!!! TTTTGTGTTTAATGTTGTTT+GGG - chr3_2:62242057-62242076 Msa0415790:intron 20.0%
!! AATCTATGAATATCTATTTG+TGG - chr3_2:62242130-62242149 Msa0415790:intron 20.0%
!! TAGAAAAGAATGTAAATATG+AGG - chr3_2:62242184-62242203 Msa0415790:intron 20.0%
!!! AATACATGTGATTTTTTCAA+AGG - chr3_2:62242459-62242478 Msa0415790:intron 20.0%
!!! GCTAATTTATTTGATTCTTT+TGG - chr3_2:62242644-62242663 Msa0415790:CDS 20.0%
!! TGCTAATAATCCAATAATTA+TGG + chr3_2:62242718-62242737 None:intergenic 20.0%
!! AAACAAATATGGAATCATTT+AGG + chr3_2:62242891-62242910 None:intergenic 20.0%
!! GTTGAGAAAAATAGAATATT+TGG + chr3_2:62243232-62243251 None:intergenic 20.0%
!!! TAATGTTAAGTTTTTAGGCA+TGG - chr3_2:62241606-62241625 Msa0415790:intron 25.0%
! ATTATGGAGATATGTTCTTA+GGG - chr3_2:62241857-62241876 Msa0415790:intron 25.0%
! AGTATATTTAACGTAGCTTT+CGG + chr3_2:62241975-62241994 None:intergenic 25.0%
! TTTGTAATGTGATACAAGAT+AGG + chr3_2:62242429-62242448 None:intergenic 25.0%
! AAGACATTTGCCATAATTAT+TGG - chr3_2:62242705-62242724 Msa0415790:CDS 25.0%
!!! TTTTTTTTGCTTTCTTGAGA+AGG - chr3_2:62242757-62242776 Msa0415790:CDS 25.0%
! AAAAATAAAGATTGAGAGAG+AGG + chr3_2:62242821-62242840 None:intergenic 25.0%
!!! GTTTTAATATTTTCTGATGC+AGG - chr3_2:62242907-62242926 Msa0415790:CDS 25.0%
! ATCAAAGTTTGTCAAACTTA+TGG - chr3_2:62242941-62242960 Msa0415790:CDS 25.0%
! TGGTATTTGAGAAGATAAAA+AGG + chr3_2:62243042-62243061 None:intergenic 25.0%
! AATAGCAATATAAGAAGAGA+GGG + chr3_2:62243083-62243102 None:intergenic 25.0%
! AAATAGCAATATAAGAAGAG+AGG + chr3_2:62243084-62243103 None:intergenic 25.0%
!! TTTTGCCTTTTATATTCACA+TGG + chr3_2:62243188-62243207 None:intergenic 25.0%
! ATGTGAATATAAAAGGCAAA+AGG - chr3_2:62243187-62243206 Msa0415790:CDS 25.0%
!!! TAATGTTAAGTTTTTAGGCA+TGG - chr3_2:62241606-62241625 Msa0415790:intron 25.0%
! ATTATGGAGATATGTTCTTA+GGG - chr3_2:62241857-62241876 Msa0415790:intron 25.0%
! AGTATATTTAACGTAGCTTT+CGG + chr3_2:62241975-62241994 None:intergenic 25.0%
! TTTGTAATGTGATACAAGAT+AGG + chr3_2:62242429-62242448 None:intergenic 25.0%
! AAGACATTTGCCATAATTAT+TGG - chr3_2:62242705-62242724 Msa0415790:CDS 25.0%
!!! TTTTTTTTGCTTTCTTGAGA+AGG - chr3_2:62242757-62242776 Msa0415790:CDS 25.0%
! AAAAATAAAGATTGAGAGAG+AGG + chr3_2:62242821-62242840 None:intergenic 25.0%
!!! GTTTTAATATTTTCTGATGC+AGG - chr3_2:62242907-62242926 Msa0415790:CDS 25.0%
! ATCAAAGTTTGTCAAACTTA+TGG - chr3_2:62242941-62242960 Msa0415790:CDS 25.0%
! TGGTATTTGAGAAGATAAAA+AGG + chr3_2:62243042-62243061 None:intergenic 25.0%
! AATAGCAATATAAGAAGAGA+GGG + chr3_2:62243083-62243102 None:intergenic 25.0%
! AAATAGCAATATAAGAAGAG+AGG + chr3_2:62243084-62243103 None:intergenic 25.0%
!! TTTTGCCTTTTATATTCACA+TGG + chr3_2:62243188-62243207 None:intergenic 25.0%
! ATGTGAATATAAAAGGCAAA+AGG - chr3_2:62243187-62243206 Msa0415790:CDS 25.0%
! CTCAATATGTGAATGTTTTG+TGG + chr3_2:62241205-62241224 None:intergenic 30.0%
CATATTGAGAAGCAAAGAAA+TGG - chr3_2:62241216-62241235 Msa0415790:three_prime_UTR 30.0%
!!! ACGATTGTTTTGAAGAAATG+TGG - chr3_2:62241637-62241656 Msa0415790:intron 30.0%
!!! CGATTGTTTTGAAGAAATGT+GGG - chr3_2:62241638-62241657 Msa0415790:intron 30.0%
GATTATGGAGATATGTTCTT+AGG - chr3_2:62241856-62241875 Msa0415790:intron 30.0%
TATATTTAACGTAGCTTTCG+GGG + chr3_2:62241973-62241992 None:intergenic 30.0%
GTATATTTAACGTAGCTTTC+GGG + chr3_2:62241974-62241993 None:intergenic 30.0%
!! TTTAGGTTGCTCTATCTTTA+GGG - chr3_2:62242222-62242241 Msa0415790:intron 30.0%
GAAAAGGCAAAGATAACTTA+AGG - chr3_2:62242549-62242568 Msa0415790:CDS 30.0%
TTGAGAAAAGCAATAGAAAG+TGG - chr3_2:62242584-62242603 Msa0415790:CDS 30.0%
TGAGAAAAGCAATAGAAAGT+GGG - chr3_2:62242585-62242604 Msa0415790:CDS 30.0%
!! TATTTGATTCTTTTGGTGAC+TGG - chr3_2:62242651-62242670 Msa0415790:CDS 30.0%
GAGAGAGGAAATTAAAAATG+TGG + chr3_2:62242806-62242825 None:intergenic 30.0%
TTCCAAAAGCAAATTTGCAA+TGG + chr3_2:62243006-62243025 None:intergenic 30.0%
GACATCCATGTGAATATAAA+AGG - chr3_2:62243180-62243199 Msa0415790:CDS 30.0%
TATAAAAGGCAAAAGGAAAG+AGG - chr3_2:62243194-62243213 Msa0415790:CDS 30.0%
! CTCAATATGTGAATGTTTTG+TGG + chr3_2:62241205-62241224 None:intergenic 30.0%
CATATTGAGAAGCAAAGAAA+TGG - chr3_2:62241216-62241235 Msa0415790:three_prime_UTR 30.0%
!!! ACGATTGTTTTGAAGAAATG+TGG - chr3_2:62241637-62241656 Msa0415790:intron 30.0%
!!! CGATTGTTTTGAAGAAATGT+GGG - chr3_2:62241638-62241657 Msa0415790:intron 30.0%
GATTATGGAGATATGTTCTT+AGG - chr3_2:62241856-62241875 Msa0415790:intron 30.0%
TATATTTAACGTAGCTTTCG+GGG + chr3_2:62241973-62241992 None:intergenic 30.0%
GTATATTTAACGTAGCTTTC+GGG + chr3_2:62241974-62241993 None:intergenic 30.0%
!! TTTAGGTTGCTCTATCTTTA+GGG - chr3_2:62242222-62242241 Msa0415790:intron 30.0%
GAAAAGGCAAAGATAACTTA+AGG - chr3_2:62242549-62242568 Msa0415790:CDS 30.0%
TTGAGAAAAGCAATAGAAAG+TGG - chr3_2:62242584-62242603 Msa0415790:CDS 30.0%
TGAGAAAAGCAATAGAAAGT+GGG - chr3_2:62242585-62242604 Msa0415790:CDS 30.0%
!! TATTTGATTCTTTTGGTGAC+TGG - chr3_2:62242651-62242670 Msa0415790:CDS 30.0%
GAGAGAGGAAATTAAAAATG+TGG + chr3_2:62242806-62242825 None:intergenic 30.0%
TTCCAAAAGCAAATTTGCAA+TGG + chr3_2:62243006-62243025 None:intergenic 30.0%
GACATCCATGTGAATATAAA+AGG - chr3_2:62243180-62243199 Msa0415790:CDS 30.0%
TATAAAAGGCAAAAGGAAAG+AGG - chr3_2:62243194-62243213 Msa0415790:CDS 30.0%
! ATGTGAATGTTTTGTGGTGA+GGG + chr3_2:62241199-62241218 None:intergenic 35.0%
! TATGTGAATGTTTTGTGGTG+AGG + chr3_2:62241200-62241219 None:intergenic 35.0%
GAAAGTTGAGAAGATCAAGA+GGG + chr3_2:62241263-62241282 None:intergenic 35.0%
TGAAAGTTGAGAAGATCAAG+AGG + chr3_2:62241264-62241283 None:intergenic 35.0%
GTAGGTTGCTGAGTTTATTA+GGG + chr3_2:62241392-62241411 None:intergenic 35.0%
TGTAGGTTGCTGAGTTTATT+AGG + chr3_2:62241393-62241412 None:intergenic 35.0%
TTGAGAAATGATTGTCCTTC+TGG - chr3_2:62241832-62241851 Msa0415790:intron 35.0%
TGAGAAATGATTGTCCTTCT+GGG - chr3_2:62241833-62241852 Msa0415790:intron 35.0%
!!! ATAATTTTGGCCTTACCATG+AGG + chr3_2:62241940-62241959 None:intergenic 35.0%
! TGGTGATGATTTGCCTAATA+TGG - chr3_2:62242021-62242040 Msa0415790:intron 35.0%
GGCTATCTTGAACATTGTTT+AGG - chr3_2:62242205-62242224 Msa0415790:intron 35.0%
!! GTTTAGGTTGCTCTATCTTT+AGG - chr3_2:62242221-62242240 Msa0415790:intron 35.0%
TCGTTTCTCTGTAGATGAAA+AGG - chr3_2:62242533-62242552 Msa0415790:CDS 35.0%
TTTCTTGAGAAGGATTTGTG+AGG - chr3_2:62242767-62242786 Msa0415790:CDS 35.0%
TTCTTGAGAAGGATTTGTGA+GGG - chr3_2:62242768-62242787 Msa0415790:CDS 35.0%
CAAATTTGCAATGGAGAAGA+AGG + chr3_2:62242997-62243016 None:intergenic 35.0%
!! CTCCATTGCAAATTTGCTTT+TGG - chr3_2:62243001-62243020 Msa0415790:CDS 35.0%
GGCAAGAAAAGATAAGACAT+TGG + chr3_2:62243062-62243081 None:intergenic 35.0%
TAGAAAAAGATGCACACCAT+TGG - chr3_2:62243158-62243177 Msa0415790:CDS 35.0%
ATATTCACATGGATGTCCAA+TGG + chr3_2:62243177-62243196 None:intergenic 35.0%
! ATGTGAATGTTTTGTGGTGA+GGG + chr3_2:62241199-62241218 None:intergenic 35.0%
! TATGTGAATGTTTTGTGGTG+AGG + chr3_2:62241200-62241219 None:intergenic 35.0%
GAAAGTTGAGAAGATCAAGA+GGG + chr3_2:62241263-62241282 None:intergenic 35.0%
TGAAAGTTGAGAAGATCAAG+AGG + chr3_2:62241264-62241283 None:intergenic 35.0%
GTAGGTTGCTGAGTTTATTA+GGG + chr3_2:62241392-62241411 None:intergenic 35.0%
TGTAGGTTGCTGAGTTTATT+AGG + chr3_2:62241393-62241412 None:intergenic 35.0%
TTGAGAAATGATTGTCCTTC+TGG - chr3_2:62241832-62241851 Msa0415790:intron 35.0%
TGAGAAATGATTGTCCTTCT+GGG - chr3_2:62241833-62241852 Msa0415790:intron 35.0%
!!! ATAATTTTGGCCTTACCATG+AGG + chr3_2:62241940-62241959 None:intergenic 35.0%
! TGGTGATGATTTGCCTAATA+TGG - chr3_2:62242021-62242040 Msa0415790:intron 35.0%
GGCTATCTTGAACATTGTTT+AGG - chr3_2:62242205-62242224 Msa0415790:intron 35.0%
!! GTTTAGGTTGCTCTATCTTT+AGG - chr3_2:62242221-62242240 Msa0415790:intron 35.0%
TCGTTTCTCTGTAGATGAAA+AGG - chr3_2:62242533-62242552 Msa0415790:CDS 35.0%
TTTCTTGAGAAGGATTTGTG+AGG - chr3_2:62242767-62242786 Msa0415790:CDS 35.0%
TTCTTGAGAAGGATTTGTGA+GGG - chr3_2:62242768-62242787 Msa0415790:CDS 35.0%
CAAATTTGCAATGGAGAAGA+AGG + chr3_2:62242997-62243016 None:intergenic 35.0%
!! CTCCATTGCAAATTTGCTTT+TGG - chr3_2:62243001-62243020 Msa0415790:CDS 35.0%
GGCAAGAAAAGATAAGACAT+TGG + chr3_2:62243062-62243081 None:intergenic 35.0%
TAGAAAAAGATGCACACCAT+TGG - chr3_2:62243158-62243177 Msa0415790:CDS 35.0%
ATATTCACATGGATGTCCAA+TGG + chr3_2:62243177-62243196 None:intergenic 35.0%
!! TTAGGTTGGATTCGTAGGTT+GGG + chr3_2:62241354-62241373 None:intergenic 40.0%
!! TTTAGGTTGGATTCGTAGGT+TGG + chr3_2:62241355-62241374 None:intergenic 40.0%
!! TGAGTTTAGGTTGGATTCGT+AGG + chr3_2:62241359-62241378 None:intergenic 40.0%
CTGAGTTTATTAGGGATGTG+AGG + chr3_2:62241384-62241403 None:intergenic 40.0%
GAAGTTGTTGTAGGATGTGT+AGG + chr3_2:62241410-62241429 None:intergenic 40.0%
! GATGATGGTGAAGTTGTTGT+AGG + chr3_2:62241419-62241438 None:intergenic 40.0%
!! TGTTGGCGATTTGAGTTTTG+TGG - chr3_2:62241774-62241793 Msa0415790:intron 40.0%
GTGTCAAGATTGTGTTTCAG+AGG - chr3_2:62241798-62241817 Msa0415790:intron 40.0%
GACAATCATTTCTCAACCGT+CGG + chr3_2:62241828-62241847 None:intergenic 40.0%
GAGAAATGATTGTCCTTCTG+GGG - chr3_2:62241834-62241853 Msa0415790:intron 40.0%
ATATCTCCATAATCCCCAGA+AGG + chr3_2:62241850-62241869 None:intergenic 40.0%
!! TCTTAGGGAAGTGTTATGCA+AGG - chr3_2:62241872-62241891 Msa0415790:intron 40.0%
! TGTTATGCAAGGTACTCTAC+TGG - chr3_2:62241883-62241902 Msa0415790:intron 40.0%
TACACCTCACACTATTGAAG+TGG + chr3_2:62242248-62242267 None:intergenic 40.0%
!! TTAGGTTGGATTCGTAGGTT+GGG + chr3_2:62241354-62241373 None:intergenic 40.0%
!! TTTAGGTTGGATTCGTAGGT+TGG + chr3_2:62241355-62241374 None:intergenic 40.0%
!! TGAGTTTAGGTTGGATTCGT+AGG + chr3_2:62241359-62241378 None:intergenic 40.0%
CTGAGTTTATTAGGGATGTG+AGG + chr3_2:62241384-62241403 None:intergenic 40.0%
GAAGTTGTTGTAGGATGTGT+AGG + chr3_2:62241410-62241429 None:intergenic 40.0%
! GATGATGGTGAAGTTGTTGT+AGG + chr3_2:62241419-62241438 None:intergenic 40.0%
!! TGTTGGCGATTTGAGTTTTG+TGG - chr3_2:62241774-62241793 Msa0415790:intron 40.0%
GTGTCAAGATTGTGTTTCAG+AGG - chr3_2:62241798-62241817 Msa0415790:intron 40.0%
GACAATCATTTCTCAACCGT+CGG + chr3_2:62241828-62241847 None:intergenic 40.0%
GAGAAATGATTGTCCTTCTG+GGG - chr3_2:62241834-62241853 Msa0415790:intron 40.0%
ATATCTCCATAATCCCCAGA+AGG + chr3_2:62241850-62241869 None:intergenic 40.0%
!! TCTTAGGGAAGTGTTATGCA+AGG - chr3_2:62241872-62241891 Msa0415790:intron 40.0%
! TGTTATGCAAGGTACTCTAC+TGG - chr3_2:62241883-62241902 Msa0415790:intron 40.0%
TACACCTCACACTATTGAAG+TGG + chr3_2:62242248-62242267 None:intergenic 40.0%
CTGTGGGGATGGAAAATGAA+TGG + chr3_2:62241291-62241310 None:intergenic 45.0%
! TAGGTTGGATTCGTAGGTTG+GGG + chr3_2:62241353-62241372 None:intergenic 45.0%
TGTGAGGAGTGAGTTTAGGT+TGG + chr3_2:62241368-62241387 None:intergenic 45.0%
GTTAGGGTTTGAGGAGATGA+TGG + chr3_2:62241434-62241453 None:intergenic 45.0%
AACCCTAACGACATCGTCTA+CGG - chr3_2:62241445-62241464 Msa0415790:three_prime_UTR 45.0%
TGGAAATGTCACCACGACAT+TGG + chr3_2:62241477-62241496 None:intergenic 45.0%
AAGAAATGTGGGCCTGAAGT+AGG - chr3_2:62241649-62241668 Msa0415790:intron 45.0%
AGAAATGTGGGCCTGAAGTA+GGG - chr3_2:62241650-62241669 Msa0415790:intron 45.0%
AACACAGCATCTATCGTTCC+CGG + chr3_2:62241682-62241701 None:intergenic 45.0%
GGAACGATAGATGCTGTGTT+GGG - chr3_2:62241682-62241701 Msa0415790:CDS 45.0%
!! GTTGTTTAGGGTTGGTGGTT+CGG - chr3_2:62241726-62241745 Msa0415790:CDS 45.0%
!! TTGTTTAGGGTTGGTGGTTC+GGG - chr3_2:62241727-62241746 Msa0415790:CDS 45.0%
! GATTGTCCTTCTGGGGATTA+TGG - chr3_2:62241841-62241860 Msa0415790:intron 45.0%
! TATGCAAGGTACTCTACTGG+TGG - chr3_2:62241886-62241905 Msa0415790:intron 45.0%
TTACTCCAAGCCTCATGGTA+AGG - chr3_2:62241927-62241946 Msa0415790:intron 45.0%
GCAGGTAAATCAGATCACGA+TGG - chr3_2:62242678-62242697 Msa0415790:CDS 45.0%
AGAAGGATTTGTGAGGGACA+AGG - chr3_2:62242774-62242793 Msa0415790:CDS 45.0%
GAAGGCTGAGAATTGATCAG+TGG + chr3_2:62242979-62242998 None:intergenic 45.0%
! AATGTTTTGTGGTGAGGGAC+AGG + chr3_2:62241194-62241213 None:intergenic 45.0%
CTGTGGGGATGGAAAATGAA+TGG + chr3_2:62241291-62241310 None:intergenic 45.0%
! TAGGTTGGATTCGTAGGTTG+GGG + chr3_2:62241353-62241372 None:intergenic 45.0%
TGTGAGGAGTGAGTTTAGGT+TGG + chr3_2:62241368-62241387 None:intergenic 45.0%
GTTAGGGTTTGAGGAGATGA+TGG + chr3_2:62241434-62241453 None:intergenic 45.0%
AACCCTAACGACATCGTCTA+CGG - chr3_2:62241445-62241464 Msa0415790:three_prime_UTR 45.0%
TGGAAATGTCACCACGACAT+TGG + chr3_2:62241477-62241496 None:intergenic 45.0%
AAGAAATGTGGGCCTGAAGT+AGG - chr3_2:62241649-62241668 Msa0415790:intron 45.0%
AGAAATGTGGGCCTGAAGTA+GGG - chr3_2:62241650-62241669 Msa0415790:intron 45.0%
AACACAGCATCTATCGTTCC+CGG + chr3_2:62241682-62241701 None:intergenic 45.0%
GGAACGATAGATGCTGTGTT+GGG - chr3_2:62241682-62241701 Msa0415790:CDS 45.0%
!! GTTGTTTAGGGTTGGTGGTT+CGG - chr3_2:62241726-62241745 Msa0415790:CDS 45.0%
!! TTGTTTAGGGTTGGTGGTTC+GGG - chr3_2:62241727-62241746 Msa0415790:CDS 45.0%
! GATTGTCCTTCTGGGGATTA+TGG - chr3_2:62241841-62241860 Msa0415790:intron 45.0%
! TATGCAAGGTACTCTACTGG+TGG - chr3_2:62241886-62241905 Msa0415790:intron 45.0%
TTACTCCAAGCCTCATGGTA+AGG - chr3_2:62241927-62241946 Msa0415790:intron 45.0%
GCAGGTAAATCAGATCACGA+TGG - chr3_2:62242678-62242697 Msa0415790:CDS 45.0%
AGAAGGATTTGTGAGGGACA+AGG - chr3_2:62242774-62242793 Msa0415790:CDS 45.0%
GAAGGCTGAGAATTGATCAG+TGG + chr3_2:62242979-62242998 None:intergenic 45.0%
CGTAGAGGAATGTGTCTGTG+GGG + chr3_2:62241306-62241325 None:intergenic 50.0%
CCGTAGAGGAATGTGTCTGT+GGG + chr3_2:62241307-62241326 None:intergenic 50.0%
CCCACAGACACATTCCTCTA+CGG - chr3_2:62241304-62241323 Msa0415790:three_prime_UTR 50.0%
ACCGTAGAGGAATGTGTCTG+TGG + chr3_2:62241308-62241327 None:intergenic 50.0%
ACAGACACATTCCTCTACGG+TGG - chr3_2:62241307-62241326 Msa0415790:three_prime_UTR 50.0%
CAGACACATTCCTCTACGGT+GGG - chr3_2:62241308-62241327 Msa0415790:three_prime_UTR 50.0%
GGGATGTGAGGAGTGAGTTT+AGG + chr3_2:62241372-62241391 None:intergenic 50.0%
GACGATGTCGTTAGGGTTTG+AGG + chr3_2:62241443-62241462 None:intergenic 50.0%
TGTCACCACGACATTGGTAG+AGG + chr3_2:62241471-62241490 None:intergenic 50.0%
ACACAGCATCTATCGTTCCC+GGG + chr3_2:62241681-62241700 None:intergenic 50.0%
GGGAACGATAGATGCTGTGT+TGG - chr3_2:62241681-62241700 Msa0415790:CDS 50.0%
ACGATAGATGCTGTGTTGGG+TGG - chr3_2:62241685-62241704 Msa0415790:CDS 50.0%
CGATAGATGCTGTGTTGGGT+GGG - chr3_2:62241686-62241705 Msa0415790:CDS 50.0%
!! GGGTTCAGGTGGGTTGTTTA+GGG - chr3_2:62241714-62241733 Msa0415790:CDS 50.0%
!! TCAGGTGGGTTGTTTAGGGT+TGG - chr3_2:62241718-62241737 Msa0415790:CDS 50.0%
TTCGGGTCAGTTGAAGGGAA+TGG - chr3_2:62241744-62241763 Msa0415790:CDS 50.0%
AAGGGAATGGCACAGTGTGT+TGG - chr3_2:62241757-62241776 Msa0415790:intron 50.0%
GTGTTTCAGAGGCAATCCGA+CGG - chr3_2:62241809-62241828 Msa0415790:intron 50.0%
CATGCTTACTCCAAGCCTCA+TGG - chr3_2:62241922-62241941 Msa0415790:intron 50.0%
!! TTTGGCCTTACCATGAGGCT+TGG + chr3_2:62241935-62241954 None:intergenic 50.0%
AGGGCCACTTCAATAGTGTG+AGG - chr3_2:62242241-62242260 Msa0415790:intron 50.0%
!!! CTTTTGGTGACTGGTCTTGC+AGG - chr3_2:62242660-62242679 Msa0415790:CDS 50.0%
CGTAGAGGAATGTGTCTGTG+GGG + chr3_2:62241306-62241325 None:intergenic 50.0%
CCGTAGAGGAATGTGTCTGT+GGG + chr3_2:62241307-62241326 None:intergenic 50.0%
CCCACAGACACATTCCTCTA+CGG - chr3_2:62241304-62241323 Msa0415790:three_prime_UTR 50.0%
ACCGTAGAGGAATGTGTCTG+TGG + chr3_2:62241308-62241327 None:intergenic 50.0%
ACAGACACATTCCTCTACGG+TGG - chr3_2:62241307-62241326 Msa0415790:three_prime_UTR 50.0%
CAGACACATTCCTCTACGGT+GGG - chr3_2:62241308-62241327 Msa0415790:three_prime_UTR 50.0%
GGGATGTGAGGAGTGAGTTT+AGG + chr3_2:62241372-62241391 None:intergenic 50.0%
GACGATGTCGTTAGGGTTTG+AGG + chr3_2:62241443-62241462 None:intergenic 50.0%
TGTCACCACGACATTGGTAG+AGG + chr3_2:62241471-62241490 None:intergenic 50.0%
ACACAGCATCTATCGTTCCC+GGG + chr3_2:62241681-62241700 None:intergenic 50.0%
GGGAACGATAGATGCTGTGT+TGG - chr3_2:62241681-62241700 Msa0415790:CDS 50.0%
ACGATAGATGCTGTGTTGGG+TGG - chr3_2:62241685-62241704 Msa0415790:CDS 50.0%
CGATAGATGCTGTGTTGGGT+GGG - chr3_2:62241686-62241705 Msa0415790:CDS 50.0%
!! GGGTTCAGGTGGGTTGTTTA+GGG - chr3_2:62241714-62241733 Msa0415790:CDS 50.0%
!! TCAGGTGGGTTGTTTAGGGT+TGG - chr3_2:62241718-62241737 Msa0415790:CDS 50.0%
TTCGGGTCAGTTGAAGGGAA+TGG - chr3_2:62241744-62241763 Msa0415790:CDS 50.0%
AAGGGAATGGCACAGTGTGT+TGG - chr3_2:62241757-62241776 Msa0415790:intron 50.0%
GTGTTTCAGAGGCAATCCGA+CGG - chr3_2:62241809-62241828 Msa0415790:intron 50.0%
CATGCTTACTCCAAGCCTCA+TGG - chr3_2:62241922-62241941 Msa0415790:intron 50.0%
!! TTTGGCCTTACCATGAGGCT+TGG + chr3_2:62241935-62241954 None:intergenic 50.0%
AGGGCCACTTCAATAGTGTG+AGG - chr3_2:62242241-62242260 Msa0415790:intron 50.0%
!!! CTTTTGGTGACTGGTCTTGC+AGG - chr3_2:62242660-62242679 Msa0415790:CDS 50.0%
GAGGAATGTGTCTGTGGGGA+TGG + chr3_2:62241302-62241321 None:intergenic 55.0%
GGCCGTAGACGATGTCGTTA+GGG + chr3_2:62241450-62241469 None:intergenic 55.0%
AGGCCGTAGACGATGTCGTT+AGG + chr3_2:62241451-62241470 None:intergenic 55.0%
TACGGCCTCTACCAATGTCG+TGG - chr3_2:62241463-62241482 Msa0415790:three_prime_UTR 55.0%
CACGCCAGGACATATGTCAC+CGG + chr3_2:62241542-62241561 None:intergenic 55.0%
GACATATGTCCTGGCGTGTG+CGG - chr3_2:62241544-62241563 Msa0415790:intron 55.0%
GCCTGAAGTAGGGTATGACC+CGG - chr3_2:62241660-62241679 Msa0415790:CDS 55.0%
CCTGAAGTAGGGTATGACCC+GGG - chr3_2:62241661-62241680 Msa0415790:CDS 55.0%
AGATGCTGTGTTGGGTGGGT+TGG - chr3_2:62241690-62241709 Msa0415790:CDS 55.0%
!! CGGGTTCAGGTGGGTTGTTT+AGG - chr3_2:62241713-62241732 Msa0415790:CDS 55.0%
!! GGTGGGTTGTTTAGGGTTGG+TGG - chr3_2:62241721-62241740 Msa0415790:CDS 55.0%
! TGGTGGTTCGGGTCAGTTGA+AGG - chr3_2:62241738-62241757 Msa0415790:CDS 55.0%
! GGTGGTTCGGGTCAGTTGAA+GGG - chr3_2:62241739-62241758 Msa0415790:CDS 55.0%
! AGGTACTCTACTGGTGGTGC+TGG - chr3_2:62241892-62241911 Msa0415790:intron 55.0%
! TACTCTACTGGTGGTGCTGG+TGG - chr3_2:62241895-62241914 Msa0415790:intron 55.0%
!! ACTCTACTGGTGGTGCTGGT+GGG - chr3_2:62241896-62241915 Msa0415790:intron 55.0%
GAGGAATGTGTCTGTGGGGA+TGG + chr3_2:62241302-62241321 None:intergenic 55.0%
GGCCGTAGACGATGTCGTTA+GGG + chr3_2:62241450-62241469 None:intergenic 55.0%
AGGCCGTAGACGATGTCGTT+AGG + chr3_2:62241451-62241470 None:intergenic 55.0%
TACGGCCTCTACCAATGTCG+TGG - chr3_2:62241463-62241482 Msa0415790:three_prime_UTR 55.0%
CACGCCAGGACATATGTCAC+CGG + chr3_2:62241542-62241561 None:intergenic 55.0%
GACATATGTCCTGGCGTGTG+CGG - chr3_2:62241544-62241563 Msa0415790:intron 55.0%
GCCTGAAGTAGGGTATGACC+CGG - chr3_2:62241660-62241679 Msa0415790:CDS 55.0%
CCTGAAGTAGGGTATGACCC+GGG - chr3_2:62241661-62241680 Msa0415790:CDS 55.0%
AGATGCTGTGTTGGGTGGGT+TGG - chr3_2:62241690-62241709 Msa0415790:CDS 55.0%
!! CGGGTTCAGGTGGGTTGTTT+AGG - chr3_2:62241713-62241732 Msa0415790:CDS 55.0%
!! GGTGGGTTGTTTAGGGTTGG+TGG - chr3_2:62241721-62241740 Msa0415790:CDS 55.0%
! TGGTGGTTCGGGTCAGTTGA+AGG - chr3_2:62241738-62241757 Msa0415790:CDS 55.0%
! GGTGGTTCGGGTCAGTTGAA+GGG - chr3_2:62241739-62241758 Msa0415790:CDS 55.0%
! AGGTACTCTACTGGTGGTGC+TGG - chr3_2:62241892-62241911 Msa0415790:intron 55.0%
! TACTCTACTGGTGGTGCTGG+TGG - chr3_2:62241895-62241914 Msa0415790:intron 55.0%
!! ACTCTACTGGTGGTGCTGGT+GGG - chr3_2:62241896-62241915 Msa0415790:intron 55.0%
CTTGTGTGCACCCACCGTAG+AGG + chr3_2:62241321-62241340 None:intergenic 60.0%
GCAATGCAGGAGGAGCAGTC+TGG + chr3_2:62241502-62241521 None:intergenic 60.0%
TGAGACAGCGCGTGCAATGC+AGG + chr3_2:62241515-62241534 None:intergenic 60.0%
! CGCACCGGTGACATATGTCC+TGG - chr3_2:62241535-62241554 Msa0415790:intron 60.0%
ATATGTCCTGGCGTGTGCGG+CGG - chr3_2:62241547-62241566 Msa0415790:intron 60.0%
GGCGGCGTAGTGCAACTAGA+AGG - chr3_2:62241565-62241584 Msa0415790:intron 60.0%
CCCGGGTCATACCCTACTTC+AGG + chr3_2:62241664-62241683 None:intergenic 60.0%
!! TGCTGTGTTGGGTGGGTTGG+CGG - chr3_2:62241693-62241712 Msa0415790:CDS 60.0%
!! CTCTACTGGTGGTGCTGGTG+GGG - chr3_2:62241897-62241916 Msa0415790:intron 60.0%
CTTGTGTGCACCCACCGTAG+AGG + chr3_2:62241321-62241340 None:intergenic 60.0%
GCAATGCAGGAGGAGCAGTC+TGG + chr3_2:62241502-62241521 None:intergenic 60.0%
TGAGACAGCGCGTGCAATGC+AGG + chr3_2:62241515-62241534 None:intergenic 60.0%
! CGCACCGGTGACATATGTCC+TGG - chr3_2:62241535-62241554 Msa0415790:intron 60.0%
ATATGTCCTGGCGTGTGCGG+CGG - chr3_2:62241547-62241566 Msa0415790:intron 60.0%
GGCGGCGTAGTGCAACTAGA+AGG - chr3_2:62241565-62241584 Msa0415790:intron 60.0%
CCCGGGTCATACCCTACTTC+AGG + chr3_2:62241664-62241683 None:intergenic 60.0%
!! TGCTGTGTTGGGTGGGTTGG+CGG - chr3_2:62241693-62241712 Msa0415790:CDS 60.0%
!! CTCTACTGGTGGTGCTGGTG+GGG - chr3_2:62241897-62241916 Msa0415790:intron 60.0%
GCAGGAGGAGCAGTCTGGCA+TGG + chr3_2:62241497-62241516 None:intergenic 65.0%
GACAGCGCGTGCAATGCAGG+AGG + chr3_2:62241512-62241531 None:intergenic 65.0%
!! GCTGTGTTGGGTGGGTTGGC+GGG - chr3_2:62241694-62241713 Msa0415790:CDS 65.0%
!! TTGGGTGGGTTGGCGGGTTC+AGG - chr3_2:62241700-62241719 Msa0415790:CDS 65.0%
!! GTGGGTTGGCGGGTTCAGGT+GGG - chr3_2:62241704-62241723 Msa0415790:CDS 65.0%
GCAGGAGGAGCAGTCTGGCA+TGG + chr3_2:62241497-62241516 None:intergenic 65.0%
GACAGCGCGTGCAATGCAGG+AGG + chr3_2:62241512-62241531 None:intergenic 65.0%
!! GCTGTGTTGGGTGGGTTGGC+GGG - chr3_2:62241694-62241713 Msa0415790:CDS 65.0%
!! TTGGGTGGGTTGGCGGGTTC+AGG - chr3_2:62241700-62241719 Msa0415790:CDS 65.0%
!! GTGGGTTGGCGGGTTCAGGT+GGG - chr3_2:62241704-62241723 Msa0415790:CDS 65.0%
GCACGCGCTGTCTCACGCAC+CGG - chr3_2:62241520-62241539 Msa0415790:intron 70.0%
!! GGTGGGTTGGCGGGTTCAGG+TGG - chr3_2:62241703-62241722 Msa0415790:CDS 70.0%
GCACGCGCTGTCTCACGCAC+CGG - chr3_2:62241520-62241539 Msa0415790:intron 70.0%
!! GGTGGGTTGGCGGGTTCAGG+TGG - chr3_2:62241703-62241722 Msa0415790:CDS 70.0%
ACTACGCCGCCGCACACGCC+AGG + chr3_2:62241556-62241575 None:intergenic 75.0%
ACTACGCCGCCGCACACGCC+AGG + chr3_2:62241556-62241575 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 62241192 62243261 62241192 ID=Msa0415790;Name=Msa0415790
chr3_2 mRNA 62241192 62243261 62241192 ID=Msa0415790-mRNA-1;Parent=Msa0415790;Name=Msa0415790-mRNA-1;_AED=0.01;_eAED=0.01;_QI=43|1|1|1|1|1|3|325|276
chr3_2 exon 62241192 62241524 62241192 ID=Msa0415790-mRNA-1:exon:13356;Parent=Msa0415790-mRNA-1
chr3_2 exon 62241658 62241771 62241658 ID=Msa0415790-mRNA-1:exon:13355;Parent=Msa0415790-mRNA-1
chr3_2 exon 62242510 62243261 62242510 ID=Msa0415790-mRNA-1:exon:13354;Parent=Msa0415790-mRNA-1
chr3_2 five_prime_UTR 62243219 62243261 62243219 ID=Msa0415790-mRNA-1:five_prime_utr;Parent=Msa0415790-mRNA-1
chr3_2 CDS 62242510 62243218 62242510 ID=Msa0415790-mRNA-1:cds;Parent=Msa0415790-mRNA-1
chr3_2 CDS 62241658 62241771 62241658 ID=Msa0415790-mRNA-1:cds;Parent=Msa0415790-mRNA-1
chr3_2 CDS 62241517 62241524 62241517 ID=Msa0415790-mRNA-1:cds;Parent=Msa0415790-mRNA-1
chr3_2 three_prime_UTR 62241192 62241516 62241192 ID=Msa0415790-mRNA-1:three_prime_utr;Parent=Msa0415790-mRNA-1
Gene Sequence

>Msa0415790

ATGGTCAAAACAAAAAAATTTCTCTCCCTCTTGATCTTCTCAACTTTCATTCTCCATTCATTTTCCATCCCCACAGACACATTCCTCTACGGTGGGTGCACACAAGAAAAATACACCCCAACCTACGAATCCAACCTAAACTCACTCCTCACATCCCTAATAAACTCAGCAACCTACACATCCTACAACAACTTCACCATCATCTCCTCAAACCCTAACGACATCGTCTACGGCCTCTACCAATGTCGTGGTGACATTTCCATGCCAGACTGCTCCTCCTGCATTGCACGCGCTGTCTCACGCACCGGTGACATATGTCCTGGCGTGTGCGGCGGCGTAGTGCAACTAGAAGGATGCTATGTGAAATATGATAATGTTAAGTTTTTAGGCATGGAAGATAAAACGATTGTTTTGAAGAAATGTGGGCCTGAAGTAGGGTATGACCCGGGAACGATAGATGCTGTGTTGGGTGGGTTGGCGGGTTCAGGTGGGTTGTTTAGGGTTGGTGGTTCGGGTCAGTTGAAGGGAATGGCACAGTGTGTTGGCGATTTGAGTTTTGTGGAGTGTCAAGATTGTGTTTCAGAGGCAATCCGACGGTTGAGAAATGATTGTCCTTCTGGGGATTATGGAGATATGTTCTTAGGGAAGTGTTATGCAAGGTACTCTACTGGTGGTGCTGGTGGGGCACATGCTTACTCCAAGCCTCATGGTAAATCAGATCACGATGGTGAGAAGACATTTGCCATAATTATTGGATTATTAGCAGTTGTTGCTATACTTATTATTTTTTTTGCTTTCTTGAGAAGGATTTGTGAGGGACAAGGTAAATAA
Protein sequence

>Msa0415790

MVKTKKFLSLLIFSTFILHSFSIPTDTFLYGGCTQEKYTPTYESNLNSLLTSLINSATYTSYNNFTIISSNPNDIVYGLYQCRGDISMPDCSSCIARAVSRTGDICPGVCGGVVQLEGCYVKYDNVKFLGMEDKTIVLKKCGPEVGYDPGTIDAVLGGLAGSGGLFRVGGSGQLKGMAQCVGDLSFVECQDCVSEAIRRLRNDCPSGDYGDMFLGKCYARYSTGGAGGAHAYSKPHGKSDHDGEKTFAIIIGLLAVVAILIIFFAFLRRICEGQGK*