AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0506920

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0506920 MtrunA17_Chr3g0110311 96.014 276 11 0 1 276 1 276 0.0 543
Msa0506920 MtrunA17_Chr5g0434531 65.125 281 90 3 1 276 1 278 1.66e-121 348
Msa0506920 MtrunA17_Chr8g0391511 48.263 259 125 3 25 274 29 287 2.06e-84 254
Msa0506920 MtrunA17_Chr7g0230381 42.366 262 134 10 6 256 16 271 1.64e-56 182
Msa0506920 MtrunA17_Chr7g0262011 28.417 278 188 4 1 270 76 350 8.00e-32 120
Msa0506920 MtrunA17_Chr1g0168311 30.142 282 174 7 12 272 8 287 3.22e-24 99.0
Msa0506920 MtrunA17_Chr2g0323011 32.474 194 117 3 42 221 45 238 7.93e-24 97.1
Msa0506920 MtrunA17_Chr1g0186151 29.545 264 164 4 27 270 32 293 1.02e-23 98.2
Msa0506920 MtrunA17_Chr2g0322981 29.661 236 148 6 4 221 3 238 2.25e-23 95.5
Msa0506920 MtrunA17_Chr1g0190321 27.049 244 158 10 26 252 31 271 2.06e-22 94.0
Msa0506920 MtrunA17_Chr1g0206361 27.099 262 166 8 32 269 40 300 2.11e-19 87.8
Msa0506920 MtrunA17_Chr1g0205771 24.800 250 167 4 41 271 56 303 5.79e-19 86.7
Msa0506920 MtrunA17_Chr1g0206331 28.980 245 144 9 5 223 8 248 9.53e-19 85.9
Msa0506920 MtrunA17_Chr8g0354351 23.077 286 192 6 7 268 9 290 2.15e-18 84.7
Msa0506920 MtrunA17_Chr7g0234231 27.461 193 124 3 44 222 42 232 2.63e-17 79.3
Msa0506920 MtrunA17_Chr6g0474811 29.339 242 142 7 7 222 8 246 3.70e-17 81.3
Msa0506920 MtrunA17_Chr1g0206351 29.302 215 132 4 27 221 33 247 4.64e-17 80.9
Msa0506920 MtrunA17_Chr7g0226901 29.333 225 143 8 10 223 13 232 6.16e-17 78.6
Msa0506920 MtrunA17_Chr6g0475001 28.750 240 147 8 6 221 5 244 8.70e-17 80.1
Msa0506920 MtrunA17_Chr6g0474971 31.343 201 117 6 41 221 38 237 9.80e-17 78.6
Msa0506920 MtrunA17_Chr6g0474871 29.412 238 142 6 7 221 8 242 1.18e-16 79.7
Msa0506920 MtrunA17_Chr6g0474901 29.353 201 121 5 41 221 38 237 1.92e-16 79.3
Msa0506920 MtrunA17_Chr3g0081031 23.636 275 177 8 4 247 9 281 2.12e-16 79.0
Msa0506920 MtrunA17_Chr3g0081011 25.500 200 137 2 34 221 39 238 2.36e-16 79.0
Msa0506920 MtrunA17_Chr3g0081001 26.866 201 134 2 34 221 39 239 2.48e-16 78.6
Msa0506920 MtrunA17_Chr6g0475091 29.000 200 123 4 41 221 54 253 6.86e-16 77.4
Msa0506920 MtrunA17_Chr6g0475201 29.167 240 147 6 4 221 5 243 1.11e-15 77.0
Msa0506920 MtrunA17_Chr3g0081051 26.866 201 125 4 41 223 40 236 2.59e-15 73.9
Msa0506920 MtrunA17_Chr5g0428531 26.582 237 147 7 10 223 11 243 3.12e-15 74.3
Msa0506920 MtrunA17_Chr8g0354341 25.123 203 137 2 34 221 37 239 4.70e-15 73.2
Msa0506920 MtrunA17_Chr8g0354421 28.634 227 135 7 1 204 23 245 8.83e-15 74.3
Msa0506920 MtrunA17_Chr6g0474861 29.016 193 112 5 27 199 27 214 9.04e-15 73.9
Msa0506920 MtrunA17_Chr5g0428571 26.263 198 130 3 41 223 45 241 2.23e-14 72.8
Msa0506920 MtrunA17_Chr5g0428591 25.217 230 154 4 10 222 11 239 5.39e-14 70.5
Msa0506920 MtrunA17_Chr5g0394001 26.939 245 159 5 38 263 41 284 5.49e-14 71.6
Msa0506920 MtrunA17_Chr6g0475121 28.729 181 109 4 60 221 65 244 1.19e-13 70.9
Msa0506920 MtrunA17_Chr8g0354411 28.061 196 122 4 28 204 29 224 2.01e-13 69.3
Msa0506920 MtrunA17_Chr2g0280381 25.620 242 150 8 2 221 1 234 4.33e-13 67.8
Msa0506920 MtrunA17_Chr1g0206201 26.400 250 158 7 7 230 7 256 4.68e-13 67.8
Msa0506920 MtrunA17_Chr1g0206231 25.869 259 147 8 42 264 52 301 5.76e-13 68.6
Msa0506920 MtrunA17_Chr4g0058891 31.210 157 94 7 76 223 82 233 8.57e-13 68.2
Msa0506920 MtrunA17_Chr1g0206291 26.778 239 148 9 7 221 23 258 1.18e-12 67.8
Msa0506920 MtrunA17_Chr3g0082951 36.275 102 61 1 28 125 116 217 1.34e-12 65.5
Msa0506920 MtrunA17_Chr8g0354281 24.000 275 180 8 28 273 29 303 2.63e-12 66.6
Msa0506920 MtrunA17_Chr1g0154311 24.436 266 162 9 41 270 49 311 2.86e-12 66.6
Msa0506920 MtrunA17_Chr3g0109411 24.186 215 146 3 24 222 25 238 3.03e-12 66.6
Msa0506920 MtrunA17_Chr2g0280391 24.852 169 113 3 41 197 50 216 6.02e-12 64.7
Msa0506920 MtrunA17_Chr8g0354431 24.554 224 149 6 1 204 1 224 9.34e-12 65.1
Msa0506920 MtrunA17_Chr8g0347571 25.989 177 122 2 55 222 61 237 4.67e-11 63.2
Msa0506920 MtrunA17_Chr6g0475111 22.632 190 122 4 28 197 286 470 4.69e-11 63.2
Msa0506920 MtrunA17_Chr6g0475111 26.667 240 155 5 3 222 9 247 5.19e-11 63.2
Msa0506920 MtrunA17_Chr8g0354441 23.490 298 199 8 1 269 6 303 7.85e-11 62.4
Msa0506920 MtrunA17_Chr5g0394021 24.664 223 148 5 74 276 80 302 8.78e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0506920 AT5G37660.1 59.364 283 105 5 1 276 9 288 1.12e-107 314
Msa0506920 AT5G37660.2 59.220 282 105 5 1 275 9 287 9.74e-107 311
Msa0506920 AT2G01660.3 53.633 289 119 10 1 276 1 287 1.46e-93 278
Msa0506920 AT2G01660.1 53.521 284 118 9 1 272 1 282 7.01e-93 276
Msa0506920 AT2G01660.2 54.435 248 98 8 1 238 1 243 1.57e-82 249
Msa0506920 AT1G70690.1 40.614 293 150 7 1 272 1 290 3.02e-67 211
Msa0506920 AT3G60720.1 39.442 251 138 6 28 268 29 275 6.45e-51 169
Msa0506920 AT3G60720.3 39.442 251 138 6 28 268 29 275 7.22e-51 169
Msa0506920 AT3G60720.2 40.865 208 113 4 28 225 29 236 6.06e-44 149
Msa0506920 AT5G43980.1 24.906 265 175 5 27 268 27 290 3.27e-20 88.6
Msa0506920 AT1G04520.1 26.165 279 178 7 17 270 24 299 1.85e-19 86.7
Msa0506920 AT5G48540.1 30.052 193 119 3 45 221 43 235 3.34e-19 85.1
Msa0506920 AT2G33330.1 27.046 281 184 7 10 270 17 296 3.93e-19 85.5
Msa0506920 AT3G22060.1 29.767 215 131 5 25 221 31 243 1.09e-17 80.9
Msa0506920 AT3G58310.1 28.692 237 144 9 8 222 16 249 2.24e-15 74.3
Msa0506920 AT1G63550.1 27.434 226 134 6 19 224 31 246 2.45e-15 75.1
Msa0506920 AT1G63580.1 27.138 269 169 8 8 254 7 270 2.73e-15 74.3
Msa0506920 AT3G21990.1 27.459 244 143 11 8 222 11 249 5.31e-15 73.2
Msa0506920 AT4G20570.1 26.250 240 151 7 8 222 25 263 6.08e-15 73.6
Msa0506920 AT4G20560.1 26.250 240 151 7 8 222 25 263 6.08e-15 73.6
Msa0506920 AT4G20540.1 26.250 240 151 7 8 222 25 263 6.08e-15 73.6
Msa0506920 AT4G20645.1 26.250 240 151 7 8 222 25 263 6.08e-15 73.6
Msa0506920 AT4G20530.1 26.250 240 151 7 8 222 25 263 6.08e-15 73.6
Msa0506920 AT4G20550.1 26.250 240 151 7 8 222 25 263 6.08e-15 73.6
Msa0506920 AT4G20640.1 26.250 240 151 7 8 222 11 249 6.73e-15 73.2
Msa0506920 AT4G20630.1 26.250 240 151 7 8 222 11 249 6.73e-15 73.2
Msa0506920 AT4G20580.1 26.250 240 151 7 8 222 11 249 6.73e-15 73.2
Msa0506920 AT4G20600.1 26.250 240 151 7 8 222 11 249 6.73e-15 73.2
Msa0506920 AT4G20620.1 26.250 240 151 7 8 222 11 249 6.73e-15 73.2
Msa0506920 AT4G20610.1 26.250 240 151 7 8 222 11 249 6.73e-15 73.2
Msa0506920 AT4G20590.1 26.250 240 151 7 8 222 11 249 6.73e-15 73.2
Msa0506920 AT4G20670.1 26.250 240 151 7 8 222 11 249 9.02e-15 72.8
Msa0506920 AT1G61750.1 26.697 221 128 7 27 221 28 240 1.30e-14 73.2
Msa0506920 AT3G22010.1 26.432 227 132 9 25 222 36 256 1.94e-13 68.9
Msa0506920 AT4G05200.2 26.050 238 148 7 9 221 26 260 1.97e-13 70.5
Msa0506920 AT4G05200.1 26.050 238 148 7 9 221 8 242 2.12e-13 70.5
Msa0506920 AT5G41300.1 21.379 290 198 5 1 263 1 287 6.01e-13 67.8
Msa0506920 AT1G63600.1 26.829 205 125 4 39 221 50 251 1.51e-12 67.0
Msa0506920 AT4G23130.3 28.571 196 121 5 42 221 46 238 5.35e-12 66.2
Msa0506920 AT4G23130.1 28.571 196 121 5 42 221 46 238 5.77e-12 66.2
Msa0506920 AT4G23130.2 28.571 196 121 5 42 221 46 238 6.06e-12 66.2
Msa0506920 AT5G41290.1 23.265 245 164 6 1 223 1 243 6.87e-12 64.7
Msa0506920 AT4G23280.1 28.037 214 129 7 28 221 28 236 1.14e-11 65.1
Msa0506920 AT1G63570.3 27.907 215 133 6 29 223 29 241 1.18e-11 64.3
Msa0506920 AT1G63570.1 27.907 215 133 6 29 223 29 241 1.18e-11 64.3
Msa0506920 AT4G23280.2 28.037 214 129 7 28 221 28 236 1.19e-11 65.1
Msa0506920 AT1G63570.2 27.907 215 133 6 29 223 82 294 1.34e-11 64.3
Msa0506920 AT4G23280.3 28.037 214 129 7 28 221 28 236 1.36e-11 65.1
Msa0506920 AT3G21970.1 27.500 240 134 10 8 216 12 242 3.05e-11 62.8

Find 109 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGACATTTGCCATAATTAT+TGG 0.167670 3_4:-53764024 Msa0506920:CDS
TGTAGGTTGCTGAGTTTATT+AGG 0.179076 3_4:+53765340 None:intergenic
CTCCATTGCAAATTTGCTTT+TGG 0.183335 3_4:-53763728 Msa0506920:three_prime_UTR
GATTATGGAGATATGTTCTT+AGG 0.204730 3_4:-53764874 Msa0506920:CDS
GATTGTCCTTCTGGGGATTA+TGG 0.218428 3_4:-53764889 Msa0506920:CDS
CGGGTTCAGGTGGGTTGTTT+AGG 0.228798 3_4:-53765017 Msa0506920:CDS
ATCAAAGTTTGTCAAACTTA+TGG 0.233696 3_4:-53763788 Msa0506920:three_prime_UTR
TTGAGAAATGATTGTCCTTC+TGG 0.234841 3_4:-53764898 Msa0506920:CDS
GACATCCATGTGAATATAAA+AGG 0.243532 3_4:-53763549 Msa0506920:three_prime_UTR
TTGTTTAGGGTTGGTGGTTC+GGG 0.272429 3_4:-53765003 Msa0506920:CDS
TTGGGTGGGTTGGCGGGTTC+AGG 0.279854 3_4:-53765030 Msa0506920:CDS
TGCTAATAATCCAATAATTA+TGG 0.281272 3_4:+53764014 None:intergenic
GGGTTCAGGTGGGTTGTTTA+GGG 0.285383 3_4:-53765016 Msa0506920:CDS
GGGATGTGAGGAGTGAGTTT+AGG 0.299474 3_4:+53765361 None:intergenic
TGGTATTTGAGAAGATAAAA+AGG 0.304797 3_4:+53763690 None:intergenic
GGTGGGTTGGCGGGTTCAGG+TGG 0.311303 3_4:-53765027 Msa0506920:CDS
GTTGTTTAGGGTTGGTGGTT+CGG 0.315244 3_4:-53765004 Msa0506920:CDS
ACTCTACTGGTGGTGCTGGT+GGG 0.348191 3_4:-53764834 Msa0506920:CDS
GACGATGTCGTTAGGGTTTG+AGG 0.353702 3_4:+53765290 None:intergenic
CTCTACTGGTGGTGCTGGTG+GGG 0.370242 3_4:-53764833 Msa0506920:CDS
TTAGGTTGGATTCGTAGGTT+GGG 0.379852 3_4:+53765379 None:intergenic
TTTAGGTTGGATTCGTAGGT+TGG 0.384495 3_4:+53765378 None:intergenic
TACTCTACTGGTGGTGCTGG+TGG 0.391074 3_4:-53764835 Msa0506920:CDS
GGTGGGTTGTTTAGGGTTGG+TGG 0.391830 3_4:-53765009 Msa0506920:CDS
TGCTGTGTTGGGTGGGTTGG+CGG 0.395709 3_4:-53765037 Msa0506920:CDS
GCTGTGTTGGGTGGGTTGGC+GGG 0.402006 3_4:-53765036 Msa0506920:CDS
AGGCCGTAGACGATGTCGTT+AGG 0.405035 3_4:+53765282 None:intergenic
TGGTGGTTCGGGTCAGTTGA+AGG 0.409087 3_4:-53764992 Msa0506920:CDS
GTAGGTTGCTGAGTTTATTA+GGG 0.412170 3_4:+53765341 None:intergenic
TCAGGTGGGTTGTTTAGGGT+TGG 0.416015 3_4:-53765012 Msa0506920:CDS
CCCGGGTCATACCCTACTTC+AGG 0.420966 3_4:+53765069 None:intergenic
TGAGAAATGATTGTCCTTCT+GGG 0.421310 3_4:-53764897 Msa0506920:CDS
TGAAAGTTGAGAAGATCAAG+AGG 0.435685 3_4:+53765469 None:intergenic
ATTATGGAGATATGTTCTTA+GGG 0.446228 3_4:-53764873 Msa0506920:CDS
TGAGACAGCGCGTGCAATGC+AGG 0.450074 3_4:+53765218 None:intergenic
TGTGAGGAGTGAGTTTAGGT+TGG 0.450370 3_4:+53765365 None:intergenic
AAGAAATGTGGGCCTGAAGT+AGG 0.455715 3_4:-53765081 Msa0506920:CDS
AGATGCTGTGTTGGGTGGGT+TGG 0.456176 3_4:-53765040 Msa0506920:CDS
GGCCGTAGACGATGTCGTTA+GGG 0.457634 3_4:+53765283 None:intergenic
AACACAGCATCTATCGTTCC+CGG 0.461385 3_4:+53765051 None:intergenic
CATATTGAGAAGCAAAGAAA+TGG 0.466949 3_4:-53765514 Msa0506920:exon
TGAGTTTAGGTTGGATTCGT+AGG 0.468195 3_4:+53765374 None:intergenic
TTTGGCCTTACCATGAGGCT+TGG 0.468981 3_4:+53764798 None:intergenic
CAAATTTGCAATGGAGAAGA+AGG 0.472499 3_4:+53763735 None:intergenic
GATGATGGTGAAGTTGTTGT+AGG 0.488958 3_4:+53765314 None:intergenic
TAGGTTGGATTCGTAGGTTG+GGG 0.494696 3_4:+53765380 None:intergenic
AACCCTAACGACATCGTCTA+CGG 0.495402 3_4:-53765285 Msa0506920:CDS
ACGATAGATGCTGTGTTGGG+TGG 0.499063 3_4:-53765045 Msa0506920:CDS
GCAATGCAGGAGGAGCAGTC+TGG 0.502669 3_4:+53765231 None:intergenic
TTCCAAAAGCAAATTTGCAA+TGG 0.509675 3_4:+53763726 None:intergenic
AGGTACTCTACTGGTGGTGC+TGG 0.511132 3_4:-53764838 Msa0506920:CDS
GAAGTTGTTGTAGGATGTGT+AGG 0.519106 3_4:+53765323 None:intergenic
GGTGGTTCGGGTCAGTTGAA+GGG 0.521698 3_4:-53764991 Msa0506920:CDS
CTGTGGGGATGGAAAATGAA+TGG 0.522591 3_4:+53765442 None:intergenic
ACAACTTTGTTGAGTGGGGA+AGG 0.522805 3_4:+53763477 None:intergenic
CTGAGTTTATTAGGGATGTG+AGG 0.524550 3_4:+53765349 None:intergenic
ATGTGAATATAAAAGGCAAA+AGG 0.530706 3_4:-53763542 Msa0506920:three_prime_UTR
AATAGCAATATAAGAAGAGA+GGG 0.531320 3_4:+53763649 None:intergenic
GGCGGCGTAGTGCAACTAGA+AGG 0.532882 3_4:-53765165 Msa0506920:CDS
GAGGAATGTGTCTGTGGGGA+TGG 0.535481 3_4:+53765431 None:intergenic
CGCACCGGTGACATATGTCC+TGG 0.536550 3_4:-53765195 Msa0506920:CDS
ACTACGCCGCCGCACACGCC+AGG 0.536702 3_4:+53765177 None:intergenic
AGAAATGTGGGCCTGAAGTA+GGG 0.540842 3_4:-53765080 Msa0506920:CDS
GACAATCATTTCTCAACCGT+CGG 0.542438 3_4:+53764905 None:intergenic
GGAACGATAGATGCTGTGTT+GGG 0.547252 3_4:-53765048 Msa0506920:CDS
CAACTTTGTTGAGTGGGGAA+GGG 0.549838 3_4:+53763478 None:intergenic
TATAAAAGGCAAAAGGAAAG+AGG 0.550930 3_4:-53763535 Msa0506920:three_prime_UTR
TGTTATGCAAGGTACTCTAC+TGG 0.554321 3_4:-53764847 Msa0506920:CDS
GTTAGGGTTTGAGGAGATGA+TGG 0.555268 3_4:+53765299 None:intergenic
GTGGGTTGGCGGGTTCAGGT+GGG 0.556632 3_4:-53765026 Msa0506920:CDS
CGATAGATGCTGTGTTGGGT+GGG 0.557400 3_4:-53765044 Msa0506920:CDS
ATATTCACATGGATGTCCAA+TGG 0.558742 3_4:+53763555 None:intergenic
TGGAAATGTCACCACGACAT+TGG 0.567004 3_4:+53765256 None:intergenic
TTCTTGAGAAGGATTTGTGA+GGG 0.570265 3_4:-53763961 Msa0506920:CDS
GCAGGAGGAGCAGTCTGGCA+TGG 0.570950 3_4:+53765236 None:intergenic
TGTCACCACGACATTGGTAG+AGG 0.571287 3_4:+53765262 None:intergenic
GTGTCAAGATTGTGTTTCAG+AGG 0.572991 3_4:-53764932 Msa0506920:CDS
GCCTGAAGTAGGGTATGACC+CGG 0.573127 3_4:-53765070 Msa0506920:CDS
TTCGGGTCAGTTGAAGGGAA+TGG 0.573592 3_4:-53764986 Msa0506920:CDS
AGAAGGATTTGTGAGGGACA+AGG 0.574299 3_4:-53763955 Msa0506920:intron
GAGAAATGATTGTCCTTCTG+GGG 0.574534 3_4:-53764896 Msa0506920:CDS
CATGCTTACTCCAAGCCTCA+TGG 0.577319 3_4:-53764808 Msa0506920:intron
CCGTAGAGGAATGTGTCTGT+GGG 0.581627 3_4:+53765426 None:intergenic
ACCGTAGAGGAATGTGTCTG+TGG 0.584034 3_4:+53765425 None:intergenic
GCACGCGCTGTCTCACGCAC+CGG 0.588396 3_4:-53765210 Msa0506920:CDS
CCCACAGACACATTCCTCTA+CGG 0.588964 3_4:-53765426 Msa0506920:CDS
GGGAACGATAGATGCTGTGT+TGG 0.602336 3_4:-53765049 Msa0506920:CDS
ACACAGCATCTATCGTTCCC+GGG 0.603589 3_4:+53765052 None:intergenic
AAATAGCAATATAAGAAGAG+AGG 0.603886 3_4:+53763648 None:intergenic
GAAAGTTGAGAAGATCAAGA+GGG 0.611900 3_4:+53765470 None:intergenic
GGCAAGAAAAGATAAGACAT+TGG 0.612310 3_4:+53763670 None:intergenic
CTTGTGTGCACCCACCGTAG+AGG 0.614149 3_4:+53765412 None:intergenic
AAGGGAATGGCACAGTGTGT+TGG 0.615028 3_4:-53764973 Msa0506920:CDS
TACGGCCTCTACCAATGTCG+TGG 0.620996 3_4:-53765267 Msa0506920:CDS
ATATGTCCTGGCGTGTGCGG+CGG 0.627188 3_4:-53765183 Msa0506920:CDS
GTGTTTCAGAGGCAATCCGA+CGG 0.633404 3_4:-53764921 Msa0506920:CDS
GACAGCGCGTGCAATGCAGG+AGG 0.641294 3_4:+53765221 None:intergenic
CAGACACATTCCTCTACGGT+GGG 0.641339 3_4:-53765422 Msa0506920:CDS
TTTCTTGAGAAGGATTTGTG+AGG 0.642073 3_4:-53763962 Msa0506920:CDS
TCTTAGGGAAGTGTTATGCA+AGG 0.643121 3_4:-53764858 Msa0506920:CDS
ACAGACACATTCCTCTACGG+TGG 0.643716 3_4:-53765423 Msa0506920:CDS
CACGCCAGGACATATGTCAC+CGG 0.653459 3_4:+53765191 None:intergenic
ATATCTCCATAATCCCCAGA+AGG 0.659310 3_4:+53764883 None:intergenic
TATGCAAGGTACTCTACTGG+TGG 0.668750 3_4:-53764844 Msa0506920:CDS
GACATATGTCCTGGCGTGTG+CGG 0.669580 3_4:-53765186 Msa0506920:CDS
GAAGGCTGAGAATTGATCAG+TGG 0.681543 3_4:+53763753 None:intergenic
CCTGAAGTAGGGTATGACCC+GGG 0.716639 3_4:-53765069 Msa0506920:CDS
CGTAGAGGAATGTGTCTGTG+GGG 0.745210 3_4:+53765427 None:intergenic
GCAGGTAAATCAGATCACGA+TGG 0.755003 3_4:-53764051 Msa0506920:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATTCTTTTAGTTTTAA+TGG + chr3_4:53764297-53764316 None:intergenic 10.0%
!!! CATTTTTTAATTTAAATTGA+TGG - chr3_4:53764701-53764720 Msa0506920:intron 10.0%
!! AGAAAATATTAAAACAAATA+TGG + chr3_4:53765201-53765220 None:intergenic 10.0%
!!! AAATATTCTTTTAGTTTTAA+TGG + chr3_4:53764297-53764316 None:intergenic 10.0%
!!! CATTTTTTAATTTAAATTGA+TGG - chr3_4:53764701-53764720 Msa0506920:intron 10.0%
!! AGAAAATATTAAAACAAATA+TGG + chr3_4:53765201-53765220 None:intergenic 10.0%
!!! TATGATAATGTTAAGTTTTT+AGG - chr3_4:53763899-53763918 Msa0506920:intron 15.0%
!!! GGGAAAAATAATAATAATTT+TGG + chr3_4:53764251-53764270 None:intergenic 15.0%
!!! AAAACTAAAAGAATATTTTG+TGG - chr3_4:53764299-53764318 Msa0506920:intron 15.0%
!!! TATGATAATGTTAAGTTTTT+AGG - chr3_4:53763899-53763918 Msa0506920:intron 15.0%
!!! GGGAAAAATAATAATAATTT+TGG + chr3_4:53764251-53764270 None:intergenic 15.0%
!!! AAAACTAAAAGAATATTTTG+TGG - chr3_4:53764299-53764318 Msa0506920:intron 15.0%
!! ATTCTTCAAAAAACCATATT+AGG + chr3_4:53764335-53764354 None:intergenic 20.0%
!!! TTTTTGTGTTTAATGTTGTT+TGG - chr3_4:53764354-53764373 Msa0506920:intron 20.0%
!!! TTTTGTGTTTAATGTTGTTT+GGG - chr3_4:53764355-53764374 Msa0506920:intron 20.0%
!! AATCTATGAATATCTATTTG+TGG - chr3_4:53764428-53764447 Msa0506920:intron 20.0%
!! TAGAAAAGAATGTAAATATG+AGG - chr3_4:53764482-53764501 Msa0506920:intron 20.0%
!!! AATACATGTGATTTTTTCAA+AGG - chr3_4:53764758-53764777 Msa0506920:intron 20.0%
!!! GCTAATTTATTTGATTCTTT+TGG - chr3_4:53764943-53764962 Msa0506920:CDS 20.0%
!! TGCTAATAATCCAATAATTA+TGG + chr3_4:53765017-53765036 None:intergenic 20.0%
!! AAACAAATATGGAATCATTT+AGG + chr3_4:53765190-53765209 None:intergenic 20.0%
!! GTTGAGAAAAATAGAATATT+TGG + chr3_4:53765531-53765550 None:intergenic 20.0%
!! ATTCTTCAAAAAACCATATT+AGG + chr3_4:53764335-53764354 None:intergenic 20.0%
!!! TTTTTGTGTTTAATGTTGTT+TGG - chr3_4:53764354-53764373 Msa0506920:intron 20.0%
!!! TTTTGTGTTTAATGTTGTTT+GGG - chr3_4:53764355-53764374 Msa0506920:intron 20.0%
!! AATCTATGAATATCTATTTG+TGG - chr3_4:53764428-53764447 Msa0506920:intron 20.0%
!! TAGAAAAGAATGTAAATATG+AGG - chr3_4:53764482-53764501 Msa0506920:intron 20.0%
!!! AATACATGTGATTTTTTCAA+AGG - chr3_4:53764758-53764777 Msa0506920:intron 20.0%
!!! GCTAATTTATTTGATTCTTT+TGG - chr3_4:53764943-53764962 Msa0506920:CDS 20.0%
!! TGCTAATAATCCAATAATTA+TGG + chr3_4:53765017-53765036 None:intergenic 20.0%
!! AAACAAATATGGAATCATTT+AGG + chr3_4:53765190-53765209 None:intergenic 20.0%
!! GTTGAGAAAAATAGAATATT+TGG + chr3_4:53765531-53765550 None:intergenic 20.0%
!!! TAATGTTAAGTTTTTAGGCA+TGG - chr3_4:53763904-53763923 Msa0506920:intron 25.0%
! ATTATGGAGATATGTTCTTA+GGG - chr3_4:53764155-53764174 Msa0506920:intron 25.0%
! AGTATATTTAACGTAGCTTT+CGG + chr3_4:53764273-53764292 None:intergenic 25.0%
! TTTGTAATGTGATACAAGAT+AGG + chr3_4:53764727-53764746 None:intergenic 25.0%
! AAGACATTTGCCATAATTAT+TGG - chr3_4:53765004-53765023 Msa0506920:CDS 25.0%
!!! TTTTTTTTGCTTTCTTGAGA+AGG - chr3_4:53765056-53765075 Msa0506920:CDS 25.0%
! AAAAATAAAGATTGAGAGAG+AGG + chr3_4:53765120-53765139 None:intergenic 25.0%
!!! GTTTTAATATTTTCTGATGC+AGG - chr3_4:53765206-53765225 Msa0506920:CDS 25.0%
! ATCAAAGTTTGTCAAACTTA+TGG - chr3_4:53765240-53765259 Msa0506920:CDS 25.0%
! TGGTATTTGAGAAGATAAAA+AGG + chr3_4:53765341-53765360 None:intergenic 25.0%
! AATAGCAATATAAGAAGAGA+GGG + chr3_4:53765382-53765401 None:intergenic 25.0%
! AAATAGCAATATAAGAAGAG+AGG + chr3_4:53765383-53765402 None:intergenic 25.0%
!! TTTTGCCTTTTATATTCACA+TGG + chr3_4:53765487-53765506 None:intergenic 25.0%
! ATGTGAATATAAAAGGCAAA+AGG - chr3_4:53765486-53765505 Msa0506920:CDS 25.0%
!!! TAATGTTAAGTTTTTAGGCA+TGG - chr3_4:53763904-53763923 Msa0506920:intron 25.0%
! ATTATGGAGATATGTTCTTA+GGG - chr3_4:53764155-53764174 Msa0506920:intron 25.0%
! AGTATATTTAACGTAGCTTT+CGG + chr3_4:53764273-53764292 None:intergenic 25.0%
! TTTGTAATGTGATACAAGAT+AGG + chr3_4:53764727-53764746 None:intergenic 25.0%
! AAGACATTTGCCATAATTAT+TGG - chr3_4:53765004-53765023 Msa0506920:CDS 25.0%
!!! TTTTTTTTGCTTTCTTGAGA+AGG - chr3_4:53765056-53765075 Msa0506920:CDS 25.0%
! AAAAATAAAGATTGAGAGAG+AGG + chr3_4:53765120-53765139 None:intergenic 25.0%
!!! GTTTTAATATTTTCTGATGC+AGG - chr3_4:53765206-53765225 Msa0506920:CDS 25.0%
! ATCAAAGTTTGTCAAACTTA+TGG - chr3_4:53765240-53765259 Msa0506920:CDS 25.0%
! TGGTATTTGAGAAGATAAAA+AGG + chr3_4:53765341-53765360 None:intergenic 25.0%
! AATAGCAATATAAGAAGAGA+GGG + chr3_4:53765382-53765401 None:intergenic 25.0%
! AAATAGCAATATAAGAAGAG+AGG + chr3_4:53765383-53765402 None:intergenic 25.0%
!! TTTTGCCTTTTATATTCACA+TGG + chr3_4:53765487-53765506 None:intergenic 25.0%
! ATGTGAATATAAAAGGCAAA+AGG - chr3_4:53765486-53765505 Msa0506920:CDS 25.0%
! CTCAATATGTGAATGTTTTG+TGG + chr3_4:53763503-53763522 None:intergenic 30.0%
CATATTGAGAAGCAAAGAAA+TGG - chr3_4:53763514-53763533 Msa0506920:three_prime_UTR 30.0%
!!! ACGATTGTTTTGAAGAAATG+TGG - chr3_4:53763935-53763954 Msa0506920:intron 30.0%
!!! CGATTGTTTTGAAGAAATGT+GGG - chr3_4:53763936-53763955 Msa0506920:intron 30.0%
GATTATGGAGATATGTTCTT+AGG - chr3_4:53764154-53764173 Msa0506920:intron 30.0%
TATATTTAACGTAGCTTTCG+GGG + chr3_4:53764271-53764290 None:intergenic 30.0%
GTATATTTAACGTAGCTTTC+GGG + chr3_4:53764272-53764291 None:intergenic 30.0%
!! TTTAGGTTGCTCTATCTTTA+GGG - chr3_4:53764520-53764539 Msa0506920:intron 30.0%
GAAAAGGCAAAGATAACTTA+AGG - chr3_4:53764848-53764867 Msa0506920:CDS 30.0%
TTGAGAAAAGCAATAGAAAG+TGG - chr3_4:53764883-53764902 Msa0506920:CDS 30.0%
TGAGAAAAGCAATAGAAAGT+GGG - chr3_4:53764884-53764903 Msa0506920:CDS 30.0%
!! TATTTGATTCTTTTGGTGAC+TGG - chr3_4:53764950-53764969 Msa0506920:CDS 30.0%
GAGAGAGGAAATTAAAAATG+TGG + chr3_4:53765105-53765124 None:intergenic 30.0%
TTCCAAAAGCAAATTTGCAA+TGG + chr3_4:53765305-53765324 None:intergenic 30.0%
GACATCCATGTGAATATAAA+AGG - chr3_4:53765479-53765498 Msa0506920:CDS 30.0%
TATAAAAGGCAAAAGGAAAG+AGG - chr3_4:53765493-53765512 Msa0506920:CDS 30.0%
! CTCAATATGTGAATGTTTTG+TGG + chr3_4:53763503-53763522 None:intergenic 30.0%
CATATTGAGAAGCAAAGAAA+TGG - chr3_4:53763514-53763533 Msa0506920:three_prime_UTR 30.0%
!!! ACGATTGTTTTGAAGAAATG+TGG - chr3_4:53763935-53763954 Msa0506920:intron 30.0%
!!! CGATTGTTTTGAAGAAATGT+GGG - chr3_4:53763936-53763955 Msa0506920:intron 30.0%
GATTATGGAGATATGTTCTT+AGG - chr3_4:53764154-53764173 Msa0506920:intron 30.0%
TATATTTAACGTAGCTTTCG+GGG + chr3_4:53764271-53764290 None:intergenic 30.0%
GTATATTTAACGTAGCTTTC+GGG + chr3_4:53764272-53764291 None:intergenic 30.0%
!! TTTAGGTTGCTCTATCTTTA+GGG - chr3_4:53764520-53764539 Msa0506920:intron 30.0%
GAAAAGGCAAAGATAACTTA+AGG - chr3_4:53764848-53764867 Msa0506920:CDS 30.0%
TTGAGAAAAGCAATAGAAAG+TGG - chr3_4:53764883-53764902 Msa0506920:CDS 30.0%
TGAGAAAAGCAATAGAAAGT+GGG - chr3_4:53764884-53764903 Msa0506920:CDS 30.0%
!! TATTTGATTCTTTTGGTGAC+TGG - chr3_4:53764950-53764969 Msa0506920:CDS 30.0%
GAGAGAGGAAATTAAAAATG+TGG + chr3_4:53765105-53765124 None:intergenic 30.0%
TTCCAAAAGCAAATTTGCAA+TGG + chr3_4:53765305-53765324 None:intergenic 30.0%
GACATCCATGTGAATATAAA+AGG - chr3_4:53765479-53765498 Msa0506920:CDS 30.0%
TATAAAAGGCAAAAGGAAAG+AGG - chr3_4:53765493-53765512 Msa0506920:CDS 30.0%
! ATGTGAATGTTTTGTGGTGA+GGG + chr3_4:53763497-53763516 None:intergenic 35.0%
! TATGTGAATGTTTTGTGGTG+AGG + chr3_4:53763498-53763517 None:intergenic 35.0%
GAAAGTTGAGAAGATCAAGA+GGG + chr3_4:53763561-53763580 None:intergenic 35.0%
TGAAAGTTGAGAAGATCAAG+AGG + chr3_4:53763562-53763581 None:intergenic 35.0%
GTAGGTTGCTGAGTTTATTA+GGG + chr3_4:53763690-53763709 None:intergenic 35.0%
TGTAGGTTGCTGAGTTTATT+AGG + chr3_4:53763691-53763710 None:intergenic 35.0%
TTGAGAAATGATTGTCCTTC+TGG - chr3_4:53764130-53764149 Msa0506920:intron 35.0%
TGAGAAATGATTGTCCTTCT+GGG - chr3_4:53764131-53764150 Msa0506920:intron 35.0%
!!! ATAATTTTGGCCTTACCATG+AGG + chr3_4:53764238-53764257 None:intergenic 35.0%
! TGGTGATGATTTGCCTAATA+TGG - chr3_4:53764319-53764338 Msa0506920:intron 35.0%
GGCTATCTTGAACATTGTTT+AGG - chr3_4:53764503-53764522 Msa0506920:intron 35.0%
!! GTTTAGGTTGCTCTATCTTT+AGG - chr3_4:53764519-53764538 Msa0506920:intron 35.0%
TCGTTTCTCTGTAGATGAAA+AGG - chr3_4:53764832-53764851 Msa0506920:CDS 35.0%
TTTCTTGAGAAGGATTTGTG+AGG - chr3_4:53765066-53765085 Msa0506920:CDS 35.0%
TTCTTGAGAAGGATTTGTGA+GGG - chr3_4:53765067-53765086 Msa0506920:CDS 35.0%
CAAATTTGCAATGGAGAAGA+AGG + chr3_4:53765296-53765315 None:intergenic 35.0%
!! CTCCATTGCAAATTTGCTTT+TGG - chr3_4:53765300-53765319 Msa0506920:CDS 35.0%
GGCAAGAAAAGATAAGACAT+TGG + chr3_4:53765361-53765380 None:intergenic 35.0%
TAGAAAAAGATGCACACCAT+TGG - chr3_4:53765457-53765476 Msa0506920:CDS 35.0%
ATATTCACATGGATGTCCAA+TGG + chr3_4:53765476-53765495 None:intergenic 35.0%
! ATGTGAATGTTTTGTGGTGA+GGG + chr3_4:53763497-53763516 None:intergenic 35.0%
! TATGTGAATGTTTTGTGGTG+AGG + chr3_4:53763498-53763517 None:intergenic 35.0%
GAAAGTTGAGAAGATCAAGA+GGG + chr3_4:53763561-53763580 None:intergenic 35.0%
TGAAAGTTGAGAAGATCAAG+AGG + chr3_4:53763562-53763581 None:intergenic 35.0%
GTAGGTTGCTGAGTTTATTA+GGG + chr3_4:53763690-53763709 None:intergenic 35.0%
TGTAGGTTGCTGAGTTTATT+AGG + chr3_4:53763691-53763710 None:intergenic 35.0%
TTGAGAAATGATTGTCCTTC+TGG - chr3_4:53764130-53764149 Msa0506920:intron 35.0%
TGAGAAATGATTGTCCTTCT+GGG - chr3_4:53764131-53764150 Msa0506920:intron 35.0%
!!! ATAATTTTGGCCTTACCATG+AGG + chr3_4:53764238-53764257 None:intergenic 35.0%
! TGGTGATGATTTGCCTAATA+TGG - chr3_4:53764319-53764338 Msa0506920:intron 35.0%
GGCTATCTTGAACATTGTTT+AGG - chr3_4:53764503-53764522 Msa0506920:intron 35.0%
!! GTTTAGGTTGCTCTATCTTT+AGG - chr3_4:53764519-53764538 Msa0506920:intron 35.0%
TCGTTTCTCTGTAGATGAAA+AGG - chr3_4:53764832-53764851 Msa0506920:CDS 35.0%
TTTCTTGAGAAGGATTTGTG+AGG - chr3_4:53765066-53765085 Msa0506920:CDS 35.0%
TTCTTGAGAAGGATTTGTGA+GGG - chr3_4:53765067-53765086 Msa0506920:CDS 35.0%
CAAATTTGCAATGGAGAAGA+AGG + chr3_4:53765296-53765315 None:intergenic 35.0%
!! CTCCATTGCAAATTTGCTTT+TGG - chr3_4:53765300-53765319 Msa0506920:CDS 35.0%
GGCAAGAAAAGATAAGACAT+TGG + chr3_4:53765361-53765380 None:intergenic 35.0%
TAGAAAAAGATGCACACCAT+TGG - chr3_4:53765457-53765476 Msa0506920:CDS 35.0%
ATATTCACATGGATGTCCAA+TGG + chr3_4:53765476-53765495 None:intergenic 35.0%
!! TTAGGTTGGATTCGTAGGTT+GGG + chr3_4:53763652-53763671 None:intergenic 40.0%
!! TTTAGGTTGGATTCGTAGGT+TGG + chr3_4:53763653-53763672 None:intergenic 40.0%
!! TGAGTTTAGGTTGGATTCGT+AGG + chr3_4:53763657-53763676 None:intergenic 40.0%
CTGAGTTTATTAGGGATGTG+AGG + chr3_4:53763682-53763701 None:intergenic 40.0%
GAAGTTGTTGTAGGATGTGT+AGG + chr3_4:53763708-53763727 None:intergenic 40.0%
! GATGATGGTGAAGTTGTTGT+AGG + chr3_4:53763717-53763736 None:intergenic 40.0%
!! TGTTGGCGATTTGAGTTTTG+TGG - chr3_4:53764072-53764091 Msa0506920:intron 40.0%
GTGTCAAGATTGTGTTTCAG+AGG - chr3_4:53764096-53764115 Msa0506920:intron 40.0%
GACAATCATTTCTCAACCGT+CGG + chr3_4:53764126-53764145 None:intergenic 40.0%
GAGAAATGATTGTCCTTCTG+GGG - chr3_4:53764132-53764151 Msa0506920:intron 40.0%
ATATCTCCATAATCCCCAGA+AGG + chr3_4:53764148-53764167 None:intergenic 40.0%
!! TCTTAGGGAAGTGTTATGCA+AGG - chr3_4:53764170-53764189 Msa0506920:intron 40.0%
! TGTTATGCAAGGTACTCTAC+TGG - chr3_4:53764181-53764200 Msa0506920:intron 40.0%
TACACCTCACACTATTGAAG+TGG + chr3_4:53764546-53764565 None:intergenic 40.0%
!! TTAGGTTGGATTCGTAGGTT+GGG + chr3_4:53763652-53763671 None:intergenic 40.0%
!! TTTAGGTTGGATTCGTAGGT+TGG + chr3_4:53763653-53763672 None:intergenic 40.0%
!! TGAGTTTAGGTTGGATTCGT+AGG + chr3_4:53763657-53763676 None:intergenic 40.0%
CTGAGTTTATTAGGGATGTG+AGG + chr3_4:53763682-53763701 None:intergenic 40.0%
GAAGTTGTTGTAGGATGTGT+AGG + chr3_4:53763708-53763727 None:intergenic 40.0%
! GATGATGGTGAAGTTGTTGT+AGG + chr3_4:53763717-53763736 None:intergenic 40.0%
!! TGTTGGCGATTTGAGTTTTG+TGG - chr3_4:53764072-53764091 Msa0506920:intron 40.0%
GTGTCAAGATTGTGTTTCAG+AGG - chr3_4:53764096-53764115 Msa0506920:intron 40.0%
GACAATCATTTCTCAACCGT+CGG + chr3_4:53764126-53764145 None:intergenic 40.0%
GAGAAATGATTGTCCTTCTG+GGG - chr3_4:53764132-53764151 Msa0506920:intron 40.0%
ATATCTCCATAATCCCCAGA+AGG + chr3_4:53764148-53764167 None:intergenic 40.0%
!! TCTTAGGGAAGTGTTATGCA+AGG - chr3_4:53764170-53764189 Msa0506920:intron 40.0%
! TGTTATGCAAGGTACTCTAC+TGG - chr3_4:53764181-53764200 Msa0506920:intron 40.0%
TACACCTCACACTATTGAAG+TGG + chr3_4:53764546-53764565 None:intergenic 40.0%
CTGTGGGGATGGAAAATGAA+TGG + chr3_4:53763589-53763608 None:intergenic 45.0%
! TAGGTTGGATTCGTAGGTTG+GGG + chr3_4:53763651-53763670 None:intergenic 45.0%
TGTGAGGAGTGAGTTTAGGT+TGG + chr3_4:53763666-53763685 None:intergenic 45.0%
GTTAGGGTTTGAGGAGATGA+TGG + chr3_4:53763732-53763751 None:intergenic 45.0%
AACCCTAACGACATCGTCTA+CGG - chr3_4:53763743-53763762 Msa0506920:three_prime_UTR 45.0%
TGGAAATGTCACCACGACAT+TGG + chr3_4:53763775-53763794 None:intergenic 45.0%
AAGAAATGTGGGCCTGAAGT+AGG - chr3_4:53763947-53763966 Msa0506920:intron 45.0%
AGAAATGTGGGCCTGAAGTA+GGG - chr3_4:53763948-53763967 Msa0506920:intron 45.0%
AACACAGCATCTATCGTTCC+CGG + chr3_4:53763980-53763999 None:intergenic 45.0%
GGAACGATAGATGCTGTGTT+GGG - chr3_4:53763980-53763999 Msa0506920:CDS 45.0%
!! GTTGTTTAGGGTTGGTGGTT+CGG - chr3_4:53764024-53764043 Msa0506920:CDS 45.0%
!! TTGTTTAGGGTTGGTGGTTC+GGG - chr3_4:53764025-53764044 Msa0506920:CDS 45.0%
! GATTGTCCTTCTGGGGATTA+TGG - chr3_4:53764139-53764158 Msa0506920:intron 45.0%
! TATGCAAGGTACTCTACTGG+TGG - chr3_4:53764184-53764203 Msa0506920:intron 45.0%
TTACTCCAAGCCTCATGGTA+AGG - chr3_4:53764225-53764244 Msa0506920:intron 45.0%
GCAGGTAAATCAGATCACGA+TGG - chr3_4:53764977-53764996 Msa0506920:CDS 45.0%
AGAAGGATTTGTGAGGGACA+AGG - chr3_4:53765073-53765092 Msa0506920:CDS 45.0%
GAAGGCTGAGAATTGATCAG+TGG + chr3_4:53765278-53765297 None:intergenic 45.0%
! AATGTTTTGTGGTGAGGGAC+AGG + chr3_4:53763492-53763511 None:intergenic 45.0%
CTGTGGGGATGGAAAATGAA+TGG + chr3_4:53763589-53763608 None:intergenic 45.0%
! TAGGTTGGATTCGTAGGTTG+GGG + chr3_4:53763651-53763670 None:intergenic 45.0%
TGTGAGGAGTGAGTTTAGGT+TGG + chr3_4:53763666-53763685 None:intergenic 45.0%
GTTAGGGTTTGAGGAGATGA+TGG + chr3_4:53763732-53763751 None:intergenic 45.0%
AACCCTAACGACATCGTCTA+CGG - chr3_4:53763743-53763762 Msa0506920:three_prime_UTR 45.0%
TGGAAATGTCACCACGACAT+TGG + chr3_4:53763775-53763794 None:intergenic 45.0%
AAGAAATGTGGGCCTGAAGT+AGG - chr3_4:53763947-53763966 Msa0506920:intron 45.0%
AGAAATGTGGGCCTGAAGTA+GGG - chr3_4:53763948-53763967 Msa0506920:intron 45.0%
AACACAGCATCTATCGTTCC+CGG + chr3_4:53763980-53763999 None:intergenic 45.0%
GGAACGATAGATGCTGTGTT+GGG - chr3_4:53763980-53763999 Msa0506920:CDS 45.0%
!! GTTGTTTAGGGTTGGTGGTT+CGG - chr3_4:53764024-53764043 Msa0506920:CDS 45.0%
!! TTGTTTAGGGTTGGTGGTTC+GGG - chr3_4:53764025-53764044 Msa0506920:CDS 45.0%
! GATTGTCCTTCTGGGGATTA+TGG - chr3_4:53764139-53764158 Msa0506920:intron 45.0%
! TATGCAAGGTACTCTACTGG+TGG - chr3_4:53764184-53764203 Msa0506920:intron 45.0%
TTACTCCAAGCCTCATGGTA+AGG - chr3_4:53764225-53764244 Msa0506920:intron 45.0%
GCAGGTAAATCAGATCACGA+TGG - chr3_4:53764977-53764996 Msa0506920:CDS 45.0%
AGAAGGATTTGTGAGGGACA+AGG - chr3_4:53765073-53765092 Msa0506920:CDS 45.0%
GAAGGCTGAGAATTGATCAG+TGG + chr3_4:53765278-53765297 None:intergenic 45.0%
CGTAGAGGAATGTGTCTGTG+GGG + chr3_4:53763604-53763623 None:intergenic 50.0%
CCGTAGAGGAATGTGTCTGT+GGG + chr3_4:53763605-53763624 None:intergenic 50.0%
CCCACAGACACATTCCTCTA+CGG - chr3_4:53763602-53763621 Msa0506920:three_prime_UTR 50.0%
ACCGTAGAGGAATGTGTCTG+TGG + chr3_4:53763606-53763625 None:intergenic 50.0%
ACAGACACATTCCTCTACGG+TGG - chr3_4:53763605-53763624 Msa0506920:three_prime_UTR 50.0%
CAGACACATTCCTCTACGGT+GGG - chr3_4:53763606-53763625 Msa0506920:three_prime_UTR 50.0%
GGGATGTGAGGAGTGAGTTT+AGG + chr3_4:53763670-53763689 None:intergenic 50.0%
GACGATGTCGTTAGGGTTTG+AGG + chr3_4:53763741-53763760 None:intergenic 50.0%
TGTCACCACGACATTGGTAG+AGG + chr3_4:53763769-53763788 None:intergenic 50.0%
ACACAGCATCTATCGTTCCC+GGG + chr3_4:53763979-53763998 None:intergenic 50.0%
GGGAACGATAGATGCTGTGT+TGG - chr3_4:53763979-53763998 Msa0506920:CDS 50.0%
ACGATAGATGCTGTGTTGGG+TGG - chr3_4:53763983-53764002 Msa0506920:CDS 50.0%
CGATAGATGCTGTGTTGGGT+GGG - chr3_4:53763984-53764003 Msa0506920:CDS 50.0%
!! GGGTTCAGGTGGGTTGTTTA+GGG - chr3_4:53764012-53764031 Msa0506920:CDS 50.0%
!! TCAGGTGGGTTGTTTAGGGT+TGG - chr3_4:53764016-53764035 Msa0506920:CDS 50.0%
TTCGGGTCAGTTGAAGGGAA+TGG - chr3_4:53764042-53764061 Msa0506920:CDS 50.0%
AAGGGAATGGCACAGTGTGT+TGG - chr3_4:53764055-53764074 Msa0506920:intron 50.0%
GTGTTTCAGAGGCAATCCGA+CGG - chr3_4:53764107-53764126 Msa0506920:intron 50.0%
CATGCTTACTCCAAGCCTCA+TGG - chr3_4:53764220-53764239 Msa0506920:intron 50.0%
!! TTTGGCCTTACCATGAGGCT+TGG + chr3_4:53764233-53764252 None:intergenic 50.0%
AGGGCCACTTCAATAGTGTG+AGG - chr3_4:53764539-53764558 Msa0506920:intron 50.0%
!!! CTTTTGGTGACTGGTCTTGC+AGG - chr3_4:53764959-53764978 Msa0506920:CDS 50.0%
CGTAGAGGAATGTGTCTGTG+GGG + chr3_4:53763604-53763623 None:intergenic 50.0%
CCGTAGAGGAATGTGTCTGT+GGG + chr3_4:53763605-53763624 None:intergenic 50.0%
CCCACAGACACATTCCTCTA+CGG - chr3_4:53763602-53763621 Msa0506920:three_prime_UTR 50.0%
ACCGTAGAGGAATGTGTCTG+TGG + chr3_4:53763606-53763625 None:intergenic 50.0%
ACAGACACATTCCTCTACGG+TGG - chr3_4:53763605-53763624 Msa0506920:three_prime_UTR 50.0%
CAGACACATTCCTCTACGGT+GGG - chr3_4:53763606-53763625 Msa0506920:three_prime_UTR 50.0%
GGGATGTGAGGAGTGAGTTT+AGG + chr3_4:53763670-53763689 None:intergenic 50.0%
GACGATGTCGTTAGGGTTTG+AGG + chr3_4:53763741-53763760 None:intergenic 50.0%
TGTCACCACGACATTGGTAG+AGG + chr3_4:53763769-53763788 None:intergenic 50.0%
ACACAGCATCTATCGTTCCC+GGG + chr3_4:53763979-53763998 None:intergenic 50.0%
GGGAACGATAGATGCTGTGT+TGG - chr3_4:53763979-53763998 Msa0506920:CDS 50.0%
ACGATAGATGCTGTGTTGGG+TGG - chr3_4:53763983-53764002 Msa0506920:CDS 50.0%
CGATAGATGCTGTGTTGGGT+GGG - chr3_4:53763984-53764003 Msa0506920:CDS 50.0%
!! GGGTTCAGGTGGGTTGTTTA+GGG - chr3_4:53764012-53764031 Msa0506920:CDS 50.0%
!! TCAGGTGGGTTGTTTAGGGT+TGG - chr3_4:53764016-53764035 Msa0506920:CDS 50.0%
TTCGGGTCAGTTGAAGGGAA+TGG - chr3_4:53764042-53764061 Msa0506920:CDS 50.0%
AAGGGAATGGCACAGTGTGT+TGG - chr3_4:53764055-53764074 Msa0506920:intron 50.0%
GTGTTTCAGAGGCAATCCGA+CGG - chr3_4:53764107-53764126 Msa0506920:intron 50.0%
CATGCTTACTCCAAGCCTCA+TGG - chr3_4:53764220-53764239 Msa0506920:intron 50.0%
!! TTTGGCCTTACCATGAGGCT+TGG + chr3_4:53764233-53764252 None:intergenic 50.0%
AGGGCCACTTCAATAGTGTG+AGG - chr3_4:53764539-53764558 Msa0506920:intron 50.0%
!!! CTTTTGGTGACTGGTCTTGC+AGG - chr3_4:53764959-53764978 Msa0506920:CDS 50.0%
GAGGAATGTGTCTGTGGGGA+TGG + chr3_4:53763600-53763619 None:intergenic 55.0%
GGCCGTAGACGATGTCGTTA+GGG + chr3_4:53763748-53763767 None:intergenic 55.0%
AGGCCGTAGACGATGTCGTT+AGG + chr3_4:53763749-53763768 None:intergenic 55.0%
TACGGCCTCTACCAATGTCG+TGG - chr3_4:53763761-53763780 Msa0506920:three_prime_UTR 55.0%
CACGCCAGGACATATGTCAC+CGG + chr3_4:53763840-53763859 None:intergenic 55.0%
GACATATGTCCTGGCGTGTG+CGG - chr3_4:53763842-53763861 Msa0506920:intron 55.0%
GCCTGAAGTAGGGTATGACC+CGG - chr3_4:53763958-53763977 Msa0506920:CDS 55.0%
CCTGAAGTAGGGTATGACCC+GGG - chr3_4:53763959-53763978 Msa0506920:CDS 55.0%
AGATGCTGTGTTGGGTGGGT+TGG - chr3_4:53763988-53764007 Msa0506920:CDS 55.0%
!! CGGGTTCAGGTGGGTTGTTT+AGG - chr3_4:53764011-53764030 Msa0506920:CDS 55.0%
!! GGTGGGTTGTTTAGGGTTGG+TGG - chr3_4:53764019-53764038 Msa0506920:CDS 55.0%
! TGGTGGTTCGGGTCAGTTGA+AGG - chr3_4:53764036-53764055 Msa0506920:CDS 55.0%
! GGTGGTTCGGGTCAGTTGAA+GGG - chr3_4:53764037-53764056 Msa0506920:CDS 55.0%
! AGGTACTCTACTGGTGGTGC+TGG - chr3_4:53764190-53764209 Msa0506920:intron 55.0%
! TACTCTACTGGTGGTGCTGG+TGG - chr3_4:53764193-53764212 Msa0506920:intron 55.0%
!! ACTCTACTGGTGGTGCTGGT+GGG - chr3_4:53764194-53764213 Msa0506920:intron 55.0%
GAGGAATGTGTCTGTGGGGA+TGG + chr3_4:53763600-53763619 None:intergenic 55.0%
GGCCGTAGACGATGTCGTTA+GGG + chr3_4:53763748-53763767 None:intergenic 55.0%
AGGCCGTAGACGATGTCGTT+AGG + chr3_4:53763749-53763768 None:intergenic 55.0%
TACGGCCTCTACCAATGTCG+TGG - chr3_4:53763761-53763780 Msa0506920:three_prime_UTR 55.0%
CACGCCAGGACATATGTCAC+CGG + chr3_4:53763840-53763859 None:intergenic 55.0%
GACATATGTCCTGGCGTGTG+CGG - chr3_4:53763842-53763861 Msa0506920:intron 55.0%
GCCTGAAGTAGGGTATGACC+CGG - chr3_4:53763958-53763977 Msa0506920:CDS 55.0%
CCTGAAGTAGGGTATGACCC+GGG - chr3_4:53763959-53763978 Msa0506920:CDS 55.0%
AGATGCTGTGTTGGGTGGGT+TGG - chr3_4:53763988-53764007 Msa0506920:CDS 55.0%
!! CGGGTTCAGGTGGGTTGTTT+AGG - chr3_4:53764011-53764030 Msa0506920:CDS 55.0%
!! GGTGGGTTGTTTAGGGTTGG+TGG - chr3_4:53764019-53764038 Msa0506920:CDS 55.0%
! TGGTGGTTCGGGTCAGTTGA+AGG - chr3_4:53764036-53764055 Msa0506920:CDS 55.0%
! GGTGGTTCGGGTCAGTTGAA+GGG - chr3_4:53764037-53764056 Msa0506920:CDS 55.0%
! AGGTACTCTACTGGTGGTGC+TGG - chr3_4:53764190-53764209 Msa0506920:intron 55.0%
! TACTCTACTGGTGGTGCTGG+TGG - chr3_4:53764193-53764212 Msa0506920:intron 55.0%
!! ACTCTACTGGTGGTGCTGGT+GGG - chr3_4:53764194-53764213 Msa0506920:intron 55.0%
CTTGTGTGCACCCACCGTAG+AGG + chr3_4:53763619-53763638 None:intergenic 60.0%
GCAATGCAGGAGGAGCAGTC+TGG + chr3_4:53763800-53763819 None:intergenic 60.0%
TGAGACAGCGCGTGCAATGC+AGG + chr3_4:53763813-53763832 None:intergenic 60.0%
! CGCACCGGTGACATATGTCC+TGG - chr3_4:53763833-53763852 Msa0506920:intron 60.0%
ATATGTCCTGGCGTGTGCGG+CGG - chr3_4:53763845-53763864 Msa0506920:intron 60.0%
GGCGGCGTAGTGCAACTAGA+AGG - chr3_4:53763863-53763882 Msa0506920:intron 60.0%
CCCGGGTCATACCCTACTTC+AGG + chr3_4:53763962-53763981 None:intergenic 60.0%
!! TGCTGTGTTGGGTGGGTTGG+CGG - chr3_4:53763991-53764010 Msa0506920:CDS 60.0%
!! CTCTACTGGTGGTGCTGGTG+GGG - chr3_4:53764195-53764214 Msa0506920:intron 60.0%
CTTGTGTGCACCCACCGTAG+AGG + chr3_4:53763619-53763638 None:intergenic 60.0%
GCAATGCAGGAGGAGCAGTC+TGG + chr3_4:53763800-53763819 None:intergenic 60.0%
TGAGACAGCGCGTGCAATGC+AGG + chr3_4:53763813-53763832 None:intergenic 60.0%
! CGCACCGGTGACATATGTCC+TGG - chr3_4:53763833-53763852 Msa0506920:intron 60.0%
ATATGTCCTGGCGTGTGCGG+CGG - chr3_4:53763845-53763864 Msa0506920:intron 60.0%
GGCGGCGTAGTGCAACTAGA+AGG - chr3_4:53763863-53763882 Msa0506920:intron 60.0%
CCCGGGTCATACCCTACTTC+AGG + chr3_4:53763962-53763981 None:intergenic 60.0%
!! TGCTGTGTTGGGTGGGTTGG+CGG - chr3_4:53763991-53764010 Msa0506920:CDS 60.0%
!! CTCTACTGGTGGTGCTGGTG+GGG - chr3_4:53764195-53764214 Msa0506920:intron 60.0%
GCAGGAGGAGCAGTCTGGCA+TGG + chr3_4:53763795-53763814 None:intergenic 65.0%
GACAGCGCGTGCAATGCAGG+AGG + chr3_4:53763810-53763829 None:intergenic 65.0%
!! GCTGTGTTGGGTGGGTTGGC+GGG - chr3_4:53763992-53764011 Msa0506920:CDS 65.0%
!! TTGGGTGGGTTGGCGGGTTC+AGG - chr3_4:53763998-53764017 Msa0506920:CDS 65.0%
!! GTGGGTTGGCGGGTTCAGGT+GGG - chr3_4:53764002-53764021 Msa0506920:CDS 65.0%
GCAGGAGGAGCAGTCTGGCA+TGG + chr3_4:53763795-53763814 None:intergenic 65.0%
GACAGCGCGTGCAATGCAGG+AGG + chr3_4:53763810-53763829 None:intergenic 65.0%
!! GCTGTGTTGGGTGGGTTGGC+GGG - chr3_4:53763992-53764011 Msa0506920:CDS 65.0%
!! TTGGGTGGGTTGGCGGGTTC+AGG - chr3_4:53763998-53764017 Msa0506920:CDS 65.0%
!! GTGGGTTGGCGGGTTCAGGT+GGG - chr3_4:53764002-53764021 Msa0506920:CDS 65.0%
GCACGCGCTGTCTCACGCAC+CGG - chr3_4:53763818-53763837 Msa0506920:intron 70.0%
!! GGTGGGTTGGCGGGTTCAGG+TGG - chr3_4:53764001-53764020 Msa0506920:CDS 70.0%
GCACGCGCTGTCTCACGCAC+CGG - chr3_4:53763818-53763837 Msa0506920:intron 70.0%
!! GGTGGGTTGGCGGGTTCAGG+TGG - chr3_4:53764001-53764020 Msa0506920:CDS 70.0%
ACTACGCCGCCGCACACGCC+AGG + chr3_4:53763854-53763873 None:intergenic 75.0%
ACTACGCCGCCGCACACGCC+AGG + chr3_4:53763854-53763873 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 53763490 53765560 53763490 ID=Msa0506920;Name=Msa0506920
chr3_4 mRNA 53763490 53765560 53763490 ID=Msa0506920-mRNA-1;Parent=Msa0506920;Name=Msa0506920-mRNA-1;_AED=0.01;_eAED=0.01;_QI=43|1|1|1|1|1|3|325|276
chr3_4 exon 53763490 53763822 53763490 ID=Msa0506920-mRNA-1:exon:11918;Parent=Msa0506920-mRNA-1
chr3_4 exon 53763956 53764069 53763956 ID=Msa0506920-mRNA-1:exon:11917;Parent=Msa0506920-mRNA-1
chr3_4 exon 53764809 53765560 53764809 ID=Msa0506920-mRNA-1:exon:11916;Parent=Msa0506920-mRNA-1
chr3_4 five_prime_UTR 53765518 53765560 53765518 ID=Msa0506920-mRNA-1:five_prime_utr;Parent=Msa0506920-mRNA-1
chr3_4 CDS 53764809 53765517 53764809 ID=Msa0506920-mRNA-1:cds;Parent=Msa0506920-mRNA-1
chr3_4 CDS 53763956 53764069 53763956 ID=Msa0506920-mRNA-1:cds;Parent=Msa0506920-mRNA-1
chr3_4 CDS 53763815 53763822 53763815 ID=Msa0506920-mRNA-1:cds;Parent=Msa0506920-mRNA-1
chr3_4 three_prime_UTR 53763490 53763814 53763490 ID=Msa0506920-mRNA-1:three_prime_utr;Parent=Msa0506920-mRNA-1
Gene Sequence

>Msa0506920

ATGGTCAAAACAAAAAAATTTCTCTCCCTCTTGATCTTCTCAACTTTCATTCTCCATTCATTTTCCATCCCCACAGACACATTCCTCTACGGTGGGTGCACACAAGAAAAATACACCCCAACCTACGAATCCAACCTAAACTCACTCCTCACATCCCTAATAAACTCAGCAACCTACACATCCTACAACAACTTCACCATCATCTCCTCAAACCCTAACGACATCGTCTACGGCCTCTACCAATGTCGTGGTGACATTTCCATGCCAGACTGCTCCTCCTGCATTGCACGCGCTGTCTCACGCACCGGTGACATATGTCCTGGCGTGTGCGGCGGCGTAGTGCAACTAGAAGGATGCTATGTGAAATATGATAATGTTAAGTTTTTAGGCATGGAAGATAAAACGATTGTTTTGAAGAAATGTGGGCCTGAAGTAGGGTATGACCCGGGAACGATAGATGCTGTGTTGGGTGGGTTGGCGGGTTCAGGTGGGTTGTTTAGGGTTGGTGGTTCGGGTCAGTTGAAGGGAATGGCACAGTGTGTTGGCGATTTGAGTTTTGTGGAGTGTCAAGATTGTGTTTCAGAGGCAATCCGACGGTTGAGAAATGATTGTCCTTCTGGGGATTATGGAGATATGTTCTTAGGGAAGTGTTATGCAAGGTACTCTACTGGTGGTGCTGGTGGGGCACATGCTTACTCCAAGCCTCATGGTAAATCAGATCACGATGGTGAGAAGACATTTGCCATAATTATTGGATTATTAGCAGTTGTTGCTATACTTATTATTTTTTTTGCTTTCTTGAGAAGGATTTGTGAGGGACAAGGTAAATAA
Protein sequence

>Msa0506920

MVKTKKFLSLLIFSTFILHSFSIPTDTFLYGGCTQEKYTPTYESNLNSLLTSLINSATYTSYNNFTIISSNPNDIVYGLYQCRGDISMPDCSSCIARAVSRTGDICPGVCGGVVQLEGCYVKYDNVKFLGMEDKTIVLKKCGPEVGYDPGTIDAVLGGLAGSGGLFRVGGSGQLKGMAQCVGDLSFVECQDCVSEAIRRLRNDCPSGDYGDMFLGKCYARYSTGGAGGAHAYSKPHGKSDHDGEKTFAIIIGLLAVVAILIIFFAFLRRICEGQGK*