Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0186500 | XP_013462254.1 | 86.925 | 696 | 62 | 6 | 1 | 667 | 1 | 696 | 0.0 | 1154 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0186500 | sp|A0A178VBJ0|APSR1_ARATH | 24.434 | 442 | 267 | 11 | 267 | 655 | 199 | 626 | 4.64e-19 | 95.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0186500 | A0A072V2N3 | 86.925 | 696 | 62 | 6 | 1 | 667 | 1 | 696 | 0.0 | 1154 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0186500 | Msa0776600 | 0.860787 | 1.619511e-63 | -8.615850e-47 |
| Msa0186500 | Msa1451700 | 0.894001 | 3.714578e-75 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0186500 | MtrunA17_Chr3g0143731 | 86.925 | 696 | 62 | 6 | 1 | 667 | 1 | 696 | 0.0 | 1154 |
| Msa0186500 | MtrunA17_Chr3g0124841 | 29.360 | 453 | 241 | 10 | 272 | 653 | 458 | 902 | 3.07e-40 | 158 |
| Msa0186500 | MtrunA17_Chr1g0211271 | 24.961 | 641 | 409 | 19 | 1 | 584 | 1 | 626 | 1.43e-30 | 128 |
| Msa0186500 | MtrunA17_Chr5g0440551 | 22.585 | 797 | 409 | 24 | 1 | 656 | 1 | 730 | 4.02e-29 | 123 |
| Msa0186500 | MtrunA17_Chr3g0130761 | 27.854 | 438 | 250 | 15 | 272 | 650 | 344 | 774 | 3.86e-26 | 114 |
| Msa0186500 | MtrunA17_Chr4g0072011 | 25.293 | 427 | 237 | 13 | 270 | 653 | 337 | 724 | 1.39e-24 | 109 |
| Msa0186500 | MtrunA17_Chr2g0298171 | 25.835 | 449 | 247 | 18 | 270 | 664 | 534 | 950 | 8.94e-23 | 103 |
| Msa0186500 | MtrunA17_Chr8g0382551 | 25.926 | 459 | 266 | 15 | 1 | 407 | 1 | 437 | 1.28e-22 | 101 |
| Msa0186500 | MtrunA17_Chr8g0335341 | 23.298 | 661 | 398 | 18 | 1 | 588 | 1 | 625 | 1.62e-20 | 96.3 |
| Msa0186500 | MtrunA17_Chr7g0250681 | 24.664 | 446 | 252 | 13 | 262 | 641 | 399 | 826 | 1.81e-19 | 93.2 |
| Msa0186500 | MtrunA17_Chr2g0331821 | 23.744 | 438 | 261 | 12 | 281 | 657 | 333 | 758 | 4.65e-19 | 91.7 |
| Msa0186500 | MtrunA17_Chr3g0118401 | 24.359 | 468 | 235 | 19 | 268 | 656 | 327 | 754 | 6.19e-17 | 85.1 |
| Msa0186500 | MtrunA17_Chr3g0139411 | 22.093 | 430 | 258 | 11 | 281 | 650 | 288 | 700 | 7.08e-17 | 84.7 |
| Msa0186500 | MtrunA17_Chr5g0405741 | 23.699 | 346 | 221 | 8 | 268 | 578 | 204 | 541 | 9.79e-17 | 84.3 |
| Msa0186500 | MtrunA17_Chr5g0448571 | 39.130 | 115 | 39 | 4 | 1 | 94 | 1 | 105 | 1.24e-14 | 77.8 |
| Msa0186500 | MtrunA17_Chr4g0004471 | 25.648 | 347 | 216 | 10 | 277 | 590 | 126 | 463 | 1.82e-14 | 76.6 |
| Msa0186500 | MtrunA17_Chr8g0382541 | 28.205 | 156 | 96 | 4 | 425 | 573 | 15 | 161 | 4.11e-12 | 66.6 |
| Msa0186500 | MtrunA17_Chr2g0303521 | 25.283 | 265 | 150 | 10 | 355 | 580 | 296 | 551 | 2.49e-11 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0186500 | AT1G20530.1 | 33.918 | 684 | 343 | 19 | 1 | 650 | 1 | 609 | 6.90e-92 | 298 |
| Msa0186500 | AT4G35240.4 | 34.266 | 429 | 230 | 9 | 268 | 657 | 419 | 834 | 2.04e-65 | 231 |
| Msa0186500 | AT4G35240.4 | 53.571 | 56 | 25 | 1 | 1 | 56 | 1 | 55 | 6.01e-13 | 72.8 |
| Msa0186500 | AT4G35240.3 | 34.266 | 429 | 230 | 9 | 268 | 657 | 419 | 834 | 2.04e-65 | 231 |
| Msa0186500 | AT4G35240.3 | 53.571 | 56 | 25 | 1 | 1 | 56 | 1 | 55 | 6.01e-13 | 72.8 |
| Msa0186500 | AT4G35240.2 | 34.266 | 429 | 230 | 9 | 268 | 657 | 419 | 834 | 4.53e-65 | 231 |
| Msa0186500 | AT4G35240.2 | 53.571 | 56 | 25 | 1 | 1 | 56 | 1 | 55 | 6.62e-13 | 72.8 |
| Msa0186500 | AT4G35240.1 | 34.266 | 429 | 230 | 9 | 268 | 657 | 419 | 834 | 4.53e-65 | 231 |
| Msa0186500 | AT4G35240.1 | 53.571 | 56 | 25 | 1 | 1 | 56 | 1 | 55 | 6.62e-13 | 72.8 |
| Msa0186500 | AT1G77500.1 | 31.667 | 420 | 240 | 11 | 272 | 648 | 453 | 868 | 1.02e-46 | 178 |
| Msa0186500 | AT1G21740.1 | 28.381 | 525 | 262 | 14 | 235 | 656 | 434 | 947 | 8.55e-43 | 166 |
| Msa0186500 | AT4G39790.1 | 24.062 | 640 | 356 | 19 | 1 | 556 | 9 | 602 | 3.28e-29 | 124 |
| Msa0186500 | AT1G02110.1 | 24.526 | 738 | 430 | 23 | 1 | 654 | 1 | 695 | 4.35e-28 | 120 |
| Msa0186500 | AT3G51290.3 | 24.434 | 442 | 267 | 11 | 267 | 655 | 199 | 626 | 4.72e-20 | 95.1 |
| Msa0186500 | AT3G51290.2 | 24.153 | 443 | 267 | 12 | 267 | 655 | 199 | 626 | 5.17e-20 | 95.5 |
| Msa0186500 | AT2G27090.2 | 23.864 | 352 | 203 | 10 | 268 | 557 | 307 | 655 | 3.60e-19 | 92.4 |
| Msa0186500 | AT2G27090.1 | 23.864 | 352 | 203 | 10 | 268 | 557 | 307 | 655 | 3.60e-19 | 92.4 |
| Msa0186500 | AT5G54480.1 | 29.730 | 259 | 140 | 8 | 353 | 582 | 397 | 642 | 5.38e-19 | 92.0 |
| Msa0186500 | AT1G52320.1 | 23.585 | 424 | 263 | 10 | 281 | 651 | 339 | 754 | 7.51e-19 | 91.7 |
| Msa0186500 | AT1G52320.2 | 23.585 | 424 | 263 | 10 | 281 | 651 | 362 | 777 | 1.01e-18 | 91.3 |
| Msa0186500 | AT1G52320.5 | 23.585 | 424 | 263 | 10 | 281 | 651 | 362 | 777 | 1.01e-18 | 91.3 |
| Msa0186500 | AT1G52320.3 | 23.821 | 424 | 262 | 10 | 281 | 651 | 36 | 451 | 4.40e-18 | 88.2 |
| Msa0186500 | AT1G52320.4 | 23.821 | 424 | 262 | 10 | 281 | 651 | 36 | 451 | 4.40e-18 | 88.2 |
| Msa0186500 | AT3G51290.1 | 24.027 | 437 | 269 | 12 | 267 | 655 | 199 | 620 | 8.90e-18 | 87.8 |
| Msa0186500 | AT2G19090.1 | 27.236 | 246 | 138 | 7 | 356 | 563 | 482 | 724 | 1.87e-17 | 87.4 |
| Msa0186500 | AT4G30130.3 | 26.522 | 230 | 130 | 6 | 356 | 549 | 401 | 627 | 1.49e-16 | 84.3 |
| Msa0186500 | AT4G30130.1 | 26.522 | 230 | 130 | 6 | 356 | 549 | 401 | 627 | 1.49e-16 | 84.3 |
| Msa0186500 | AT3G60320.1 | 23.947 | 451 | 252 | 14 | 262 | 641 | 349 | 779 | 9.56e-16 | 81.6 |
| Msa0186500 | AT2G17110.1 | 32.143 | 196 | 115 | 5 | 1 | 182 | 1 | 192 | 6.92e-15 | 79.0 |
| Msa0186500 | AT5G25590.1 | 22.350 | 434 | 266 | 10 | 276 | 650 | 337 | 758 | 3.61e-12 | 70.1 |
| Msa0186500 | AT2G34670.2 | 23.466 | 277 | 170 | 8 | 355 | 599 | 336 | 602 | 4.53e-11 | 66.6 |
Find 138 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATTCCGGGAATGTGATTT+TGG | 0.182499 | 2_1:+1226548 | Msa0186500:CDS |
| TGAAACAGTGAAAGAAATTC+AGG | 0.247480 | 2_1:+1226506 | Msa0186500:CDS |
| AACAGACTGTTGTATTCTTT+TGG | 0.270098 | 2_1:+1228318 | Msa0186500:intron |
| ATTTAACTCGGAAAAGTTTC+CGG | 0.282554 | 2_1:-1226154 | None:intergenic |
| GTTATGTTTAGATGGGAAAA+TGG | 0.295262 | 2_1:-1225670 | None:intergenic |
| GGACAAGGAAATAGAGAAAA+AGG | 0.298355 | 2_1:+1228804 | Msa0186500:CDS |
| AACCCATCGTTATGTTTAGA+TGG | 0.301194 | 2_1:-1225678 | None:intergenic |
| TTTGAAAGAGCATCGGATTC+CGG | 0.302014 | 2_1:+1226534 | Msa0186500:CDS |
| TTTCAACAATTTCCTGATAC+TGG | 0.313090 | 2_1:-1228414 | None:intergenic |
| GGAACTTAAGCTTCTTAGAT+TGG | 0.320170 | 2_1:+1228527 | Msa0186500:CDS |
| AATGTAATTGAAGCTGTAAA+TGG | 0.333095 | 2_1:+1228715 | Msa0186500:CDS |
| TGAGAGTGAGGGTTTGGTTT+CGG | 0.334144 | 2_1:-1225884 | None:intergenic |
| ATCTTACTAGCCAATCATTC+AGG | 0.336155 | 2_1:-1228579 | None:intergenic |
| ATGTTACAAACGCCAGTATC+AGG | 0.344767 | 2_1:+1228402 | Msa0186500:CDS |
| GTTGAGACGTATGAATAAAA+AGG | 0.346849 | 2_1:+1227749 | Msa0186500:CDS |
| GTCATAAAAGTCACATTATC+AGG | 0.369634 | 2_1:-1226078 | None:intergenic |
| CGGAAGAATCTTCAAATTGT+TGG | 0.372285 | 2_1:-1225861 | None:intergenic |
| AAATGAAGAAGGGAATAATA+AGG | 0.376445 | 2_1:+1226389 | Msa0186500:CDS |
| TTGAAAGAGCATCGGATTCC+GGG | 0.378220 | 2_1:+1226535 | Msa0186500:CDS |
| GGTTCCAATTGCAAAAGAAC+TGG | 0.390507 | 2_1:+1228891 | Msa0186500:CDS |
| GTGAGTGTGTTAAATCTAAC+GGG | 0.394522 | 2_1:+1226346 | Msa0186500:CDS |
| GGAGCAAAAGTTGGACAAAA+TGG | 0.395596 | 2_1:+1228846 | Msa0186500:CDS |
| GGAGAGTAGGAATCGTAAAT+AGG | 0.403861 | 2_1:-1226111 | None:intergenic |
| TGGTATGAAGTGGTGTTTAT+TGG | 0.407417 | 2_1:-1225559 | None:intergenic |
| CTCCTCCGAGCAATTCTGCT+TGG | 0.412105 | 2_1:+1226190 | Msa0186500:CDS |
| TCCTCCGAGCAATTCTGCTT+GGG | 0.412629 | 2_1:+1226191 | Msa0186500:CDS |
| TGAGGAGACATCTAAAGCTT+TGG | 0.413492 | 2_1:-1228437 | None:intergenic |
| CTCAAGACTTGACCGGCTTC+CGG | 0.416738 | 2_1:+1225708 | Msa0186500:CDS |
| CTTACTGATGAAAGGTTTCT+CGG | 0.419023 | 2_1:+1228358 | Msa0186500:CDS |
| CAGAATGATTCGACTCCCTT+TGG | 0.419176 | 2_1:+1228628 | Msa0186500:CDS |
| CAAATTGTTGGAAGAAATGA+AGG | 0.422702 | 2_1:-1225849 | None:intergenic |
| CATGTCCAAAATCACATTCC+CGG | 0.443596 | 2_1:-1226553 | None:intergenic |
| ATGTAATTGAAGCTGTAAAT+GGG | 0.444055 | 2_1:+1228716 | Msa0186500:CDS |
| ATTCCACACATTTAACCATC+AGG | 0.454962 | 2_1:-1226753 | None:intergenic |
| GCAAAAGAACTGGGAGAAGT+AGG | 0.477697 | 2_1:+1228901 | Msa0186500:CDS |
| TCTTACTAGCCAATCATTCA+GGG | 0.478742 | 2_1:-1228578 | None:intergenic |
| TTGCTCGGAGGAGGCGGTGA+CGG | 0.480688 | 2_1:-1226180 | None:intergenic |
| CCCGTCTACTTACTGATGAA+AGG | 0.481763 | 2_1:+1228350 | Msa0186500:CDS |
| GCAGAATTGCTCGGAGGAGG+CGG | 0.500113 | 2_1:-1226186 | None:intergenic |
| CAAAAGAACTGGGAGAAGTA+GGG | 0.500472 | 2_1:+1228902 | Msa0186500:CDS |
| GCAAGGCTTTCTGTTGAATG+AGG | 0.505492 | 2_1:-1228455 | None:intergenic |
| ATCAGGAACTGAGGATAAAA+CGG | 0.506925 | 2_1:-1226061 | None:intergenic |
| ATGTGAAAGCCCTGAATGAT+TGG | 0.508812 | 2_1:+1228569 | Msa0186500:CDS |
| GGACAGGCAGGAGCAAAAGT+TGG | 0.512631 | 2_1:+1228837 | Msa0186500:CDS |
| CTCCCTCGCCGATGCACACG+TGG | 0.512656 | 2_1:+1225789 | Msa0186500:CDS |
| ACCCATCGTTATGTTTAGAT+GGG | 0.515465 | 2_1:-1225677 | None:intergenic |
| CAAGCAGAATTGCTCGGAGG+AGG | 0.516049 | 2_1:-1226189 | None:intergenic |
| CTTTGAGTAAACTATGTATG+TGG | 0.523067 | 2_1:+1226851 | Msa0186500:CDS |
| CCGGTCGTGTTCGACGGAGG+CGG | 0.524060 | 2_1:-1226135 | None:intergenic |
| GATTCTATTAGCTTACAGTC+TGG | 0.524395 | 2_1:+1228955 | Msa0186500:CDS |
| AGTGAGTGTGTTAAATCTAA+CGG | 0.527826 | 2_1:+1226345 | Msa0186500:CDS |
| GTCGTGTTCGACGGAGGCGG+AGG | 0.528125 | 2_1:-1226132 | None:intergenic |
| CCGCCTCCGTCGAACACGAC+CGG | 0.529880 | 2_1:+1226135 | Msa0186500:CDS |
| TCAAATCCGAGTTACAGAAA+TGG | 0.530303 | 2_1:+1228506 | Msa0186500:CDS |
| CGACGGAGGCGGAGGAGAGT+AGG | 0.531019 | 2_1:-1226124 | None:intergenic |
| CGATGCACACGTGGCACACA+TGG | 0.533761 | 2_1:+1225798 | Msa0186500:CDS |
| TAAGTTCCATTTCTGTAACT+CGG | 0.534443 | 2_1:-1228512 | None:intergenic |
| TTTCAAATGAATTGAAAAGG+AGG | 0.534596 | 2_1:-1225603 | None:intergenic |
| TTGCTACATTCTTCTAACTC+CGG | 0.535557 | 2_1:-1226456 | None:intergenic |
| ACCTTTCATCAGTAAGTAGA+CGG | 0.539263 | 2_1:-1228351 | None:intergenic |
| GAAACAGATCTTTGTTGCCA+TGG | 0.539505 | 2_1:+1228981 | Msa0186500:CDS |
| TCCCATCTAAACATAACGAT+GGG | 0.543439 | 2_1:+1225676 | Msa0186500:exon |
| ATGAAAGGTTTCTCGGAATG+TGG | 0.545233 | 2_1:+1228365 | Msa0186500:CDS |
| CGGCGAGGGAGTAGCTTTGA+CGG | 0.546200 | 2_1:-1225777 | None:intergenic |
| TCCTTCGTCGAATCCCCTGA+TGG | 0.547713 | 2_1:+1226738 | Msa0186500:CDS |
| AAAGAAAAGGAAAAGGATAA+CGG | 0.551464 | 2_1:+1226306 | Msa0186500:CDS |
| TGTTTGTGCTCCTACACAAA+TGG | 0.551891 | 2_1:+1228662 | Msa0186500:CDS |
| ATGGAATCCCTCAGAACACT+TGG | 0.552322 | 2_1:+1225817 | Msa0186500:CDS |
| ACAATGACACGGCCGGAAGC+CGG | 0.553121 | 2_1:-1225720 | None:intergenic |
| AGTGAGACAGAAAATGAAGA+AGG | 0.553164 | 2_1:+1226378 | Msa0186500:CDS |
| AAGTTTCCGGTCGTGTTCGA+CGG | 0.553782 | 2_1:-1226141 | None:intergenic |
| GTGAGACAGAAAATGAAGAA+GGG | 0.555173 | 2_1:+1226379 | Msa0186500:CDS |
| TTGGAAGAAATGAAGGAGAG+TGG | 0.556169 | 2_1:-1225842 | None:intergenic |
| TTCATATAAACTAGCAGTAG+TGG | 0.556928 | 2_1:-1229016 | None:intergenic |
| AATCATTCAGGGCTTTCACA+TGG | 0.557484 | 2_1:-1228567 | None:intergenic |
| AACACAGGTGGTGCACCAAA+GGG | 0.559781 | 2_1:-1228643 | None:intergenic |
| CGGTGACGGCGGATTTAACT+CGG | 0.561880 | 2_1:-1226166 | None:intergenic |
| GCAACGCCTCAAGACTTGAC+CGG | 0.564219 | 2_1:+1225701 | Msa0186500:CDS |
| GGTTCTGTTTGAAAGAGCAT+CGG | 0.570789 | 2_1:+1226527 | Msa0186500:CDS |
| CGGAAGCCGGTCAAGTCTTG+AGG | 0.571200 | 2_1:-1225707 | None:intergenic |
| CGTTACAGTCACGGTGGGGA+CGG | 0.572758 | 2_1:+1226255 | Msa0186500:CDS |
| GCATCAATATTAGCATTGCA+AGG | 0.572965 | 2_1:-1228472 | None:intergenic |
| TGGAAGAAATGAAGGAGAGT+GGG | 0.574118 | 2_1:-1225841 | None:intergenic |
| TTCCCATCTAAACATAACGA+TGG | 0.574582 | 2_1:+1225675 | Msa0186500:exon |
| GAAGGCTAGAGAGAGAAAGA+TGG | 0.579930 | 2_1:+1228870 | Msa0186500:CDS |
| CGTACTTTGAATTTCTCGTA+CGG | 0.580664 | 2_1:-1226234 | None:intergenic |
| CGATGAATTTGCAACGGTCA+CGG | 0.581048 | 2_1:-1225744 | None:intergenic |
| GCTTCAGAAGAATTCAACAT+TGG | 0.581654 | 2_1:+1228783 | Msa0186500:CDS |
| AATTCCCAAGCAGAATTGCT+CGG | 0.583332 | 2_1:-1226195 | None:intergenic |
| AAGTACGTTACAGTCACGGT+GGG | 0.586677 | 2_1:+1226250 | Msa0186500:CDS |
| GAGTGGGGCCAAGTGTTCTG+AGG | 0.588327 | 2_1:-1225825 | None:intergenic |
| AAACACAGGTGGTGCACCAA+AGG | 0.589556 | 2_1:-1228644 | None:intergenic |
| TTACACTGACACCAACGTAA+CGG | 0.593029 | 2_1:+1226278 | Msa0186500:CDS |
| CCTTTCATCAGTAAGTAGAC+GGG | 0.593050 | 2_1:-1228350 | None:intergenic |
| CAATCCGCTTTGCGTCCACA+TGG | 0.593447 | 2_1:-1226778 | None:intergenic |
| TCAAGGAGTTTACAAAGACA+AGG | 0.594008 | 2_1:+1226801 | Msa0186500:CDS |
| TCCACACATTTAACCATCAG+GGG | 0.594151 | 2_1:-1226751 | None:intergenic |
| TGCCACGTGTGCATCGGCGA+GGG | 0.594705 | 2_1:-1225791 | None:intergenic |
| CATGTGTGCCACGTGTGCAT+CGG | 0.595077 | 2_1:-1225797 | None:intergenic |
| CTCGGAGGAGGCGGTGACGG+CGG | 0.596358 | 2_1:-1226177 | None:intergenic |
| TTCCACACATTTAACCATCA+GGG | 0.598267 | 2_1:-1226752 | None:intergenic |
| TTCAAAGTACGTTACAGTCA+CGG | 0.598956 | 2_1:+1226246 | Msa0186500:CDS |
| TCACGGCACAATGACACGGC+CGG | 0.601932 | 2_1:-1225727 | None:intergenic |
| GTTCCAATTGCAAAAGAACT+GGG | 0.602146 | 2_1:+1228892 | Msa0186500:CDS |
| TTTGAGTAAACTATGTATGT+GGG | 0.602963 | 2_1:+1226852 | Msa0186500:CDS |
| GGAAGGGTTGTGGTATGAAG+TGG | 0.603362 | 2_1:-1225569 | None:intergenic |
| TTTCCGGTCGTGTTCGACGG+AGG | 0.608571 | 2_1:-1226138 | None:intergenic |
| CAAGGAGTTTACAAAGACAA+GGG | 0.609823 | 2_1:+1226802 | Msa0186500:CDS |
| GAAGCTGTATCATGAAGTCA+AGG | 0.612721 | 2_1:+1226879 | Msa0186500:CDS |
| AAAGTTGGACAAAATGGTGA+AGG | 0.613385 | 2_1:+1228852 | Msa0186500:CDS |
| TCCCCTGATGGTTAAATGTG+TGG | 0.614115 | 2_1:+1226750 | Msa0186500:CDS |
| AGTGGGGCCAAGTGTTCTGA+GGG | 0.618801 | 2_1:-1225824 | None:intergenic |
| ACGGTCACGGCACAATGACA+CGG | 0.619706 | 2_1:-1225731 | None:intergenic |
| AGGATAAAACGGTGTCGTGG+TGG | 0.620598 | 2_1:-1226050 | None:intergenic |
| ACCATCAGGGGATTCGACGA+AGG | 0.623509 | 2_1:-1226739 | None:intergenic |
| GGTTCTGATTCAGAATGCAG+AGG | 0.623936 | 2_1:-1225967 | None:intergenic |
| GAGTGAGGGTTTGGTTTCGG+CGG | 0.628949 | 2_1:-1225881 | None:intergenic |
| GTTCTGATTCAGAATGCAGA+GGG | 0.631693 | 2_1:-1225966 | None:intergenic |
| AGTGGCACTGAACTTCTCCA+TGG | 0.633761 | 2_1:-1228998 | None:intergenic |
| GGACGCAAAGCGGATTGTCA+AGG | 0.634785 | 2_1:+1226784 | Msa0186500:CDS |
| GAAGAATTCAACATTGGACA+AGG | 0.637945 | 2_1:+1228789 | Msa0186500:CDS |
| CTGAGGATAAAACGGTGTCG+TGG | 0.638029 | 2_1:-1226053 | None:intergenic |
| GCATTCTGAATCAGAACCAG+AGG | 0.644566 | 2_1:+1225972 | Msa0186500:CDS |
| AAAAGAACTGGGAGAAGTAG+GGG | 0.650526 | 2_1:+1228903 | Msa0186500:CDS |
| ATTCGTCGATGAATTTGCAA+CGG | 0.650583 | 2_1:-1225750 | None:intergenic |
| GTGCCACGTGTGCATCGGCG+AGG | 0.651030 | 2_1:-1225792 | None:intergenic |
| ATCGTAAATAGGTTTGACGT+AGG | 0.656289 | 2_1:-1226100 | None:intergenic |
| AGTCACATTATCAGGAACTG+AGG | 0.657704 | 2_1:-1226070 | None:intergenic |
| ATCACCATGTGGACGCAAAG+CGG | 0.660013 | 2_1:+1226774 | Msa0186500:CDS |
| GGAAGAAATGAAGGAGAGTG+GGG | 0.663765 | 2_1:-1225840 | None:intergenic |
| TTGTGTAGGAGCACAAACAC+AGG | 0.670329 | 2_1:-1228658 | None:intergenic |
| AAGGAGTTTACAAAGACAAG+GGG | 0.677263 | 2_1:+1226803 | Msa0186500:CDS |
| AGTACGTTACAGTCACGGTG+GGG | 0.702538 | 2_1:+1226251 | Msa0186500:CDS |
| AAAGTACGTTACAGTCACGG+TGG | 0.707803 | 2_1:+1226249 | Msa0186500:CDS |
| TGTAGGAGCACAAACACAGG+TGG | 0.724501 | 2_1:-1228655 | None:intergenic |
| TCCCAAGCAGAATTGCTCGG+AGG | 0.746950 | 2_1:-1226192 | None:intergenic |
| TGAGTGTGTTAAATCTAACG+GGG | 0.751457 | 2_1:+1226347 | Msa0186500:CDS |
| AAATGTGTGGAATCACCATG+TGG | 0.781613 | 2_1:+1226763 | Msa0186500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAAAATTTGATATATTTAT+AGG | + | chr2_1:1227177-1227196 | Msa0186500:intron | 10.0% |
| !! | CAAAATTTGATATATTTATA+GGG | + | chr2_1:1227178-1227197 | Msa0186500:intron | 10.0% |
| !!! | TAATATTAACTTTATTTTAG+CGG | + | chr2_1:1227504-1227523 | Msa0186500:intron | 10.0% |
| !!! | AAAGAATTAATTGAGATTTT+TGG | + | chr2_1:1226683-1226702 | Msa0186500:intron | 15.0% |
| !!! | ATTATATTATATGCCTTTTA+TGG | + | chr2_1:1227650-1227669 | Msa0186500:intron | 15.0% |
| !!! | TAAATGTTCATTTTTTTTTC+AGG | + | chr2_1:1227683-1227702 | Msa0186500:intron | 15.0% |
| !! | TGTTAGATTTAAGAAAATAT+AGG | - | chr2_1:1228302-1228321 | None:intergenic | 15.0% |
| !!! | TATTGGTCAATTTTATCATA+GGG | - | chr2_1:1225545-1225564 | None:intergenic | 20.0% |
| !!! | TTATTGGTCAATTTTATCAT+AGG | - | chr2_1:1225546-1225565 | None:intergenic | 20.0% |
| !!! | TGTTTTCAAATGAATTGAAA+AGG | - | chr2_1:1225609-1225628 | None:intergenic | 20.0% |
| !!! | AATTTTGAAGAAAAAGTTAC+CGG | + | chr2_1:1226437-1226456 | Msa0186500:CDS | 20.0% |
| !! | TTATTTAACTCTGTATTAGA+AGG | - | chr2_1:1226946-1226965 | None:intergenic | 20.0% |
| !! | TTTCATTAAAAATCAAGTCA+TGG | + | chr2_1:1227022-1227041 | Msa0186500:intron | 20.0% |
| !! | ATTAAGACACTTTATTCTAA+GGG | - | chr2_1:1227221-1227240 | None:intergenic | 20.0% |
| !! | AATTAAGACACTTTATTCTA+AGG | - | chr2_1:1227222-1227241 | None:intergenic | 20.0% |
| !! | TAGGTTCAAATAATTAAACA+TGG | - | chr2_1:1227963-1227982 | None:intergenic | 20.0% |
| !! | TTCAATCATTTCATAATAAG+TGG | - | chr2_1:1228052-1228071 | None:intergenic | 20.0% |
| !! | AACCAAAAAATGATTGAAAA+TGG | + | chr2_1:1228197-1228216 | Msa0186500:intron | 20.0% |
| !! | ATATAAAGAAATAGTCTCAT+AGG | - | chr2_1:1228227-1228246 | None:intergenic | 20.0% |
| !! | ATTGGTCAATTTTATCATAG+GGG | - | chr2_1:1225544-1225563 | None:intergenic | 25.0% |
| ! | TTTCAAATGAATTGAAAAGG+AGG | - | chr2_1:1225606-1225625 | None:intergenic | 25.0% |
| ! | GGAAAATGGAAAAAAGATAA+CGG | - | chr2_1:1225659-1225678 | None:intergenic | 25.0% |
| ! | AAAGAAAAGGAAAAGGATAA+CGG | + | chr2_1:1226306-1226325 | Msa0186500:CDS | 25.0% |
| ! | AAATGAAGAAGGGAATAATA+AGG | + | chr2_1:1226389-1226408 | Msa0186500:CDS | 25.0% |
| !! | GATTGAGTTCAATTTTTGAA+TGG | - | chr2_1:1226602-1226621 | None:intergenic | 25.0% |
| ! | TTTGAGTAAACTATGTATGT+GGG | + | chr2_1:1226852-1226871 | Msa0186500:CDS | 25.0% |
| ! | TCGGTACATCATTAAAAATT+CGG | + | chr2_1:1227052-1227071 | Msa0186500:intron | 25.0% |
| !! | TTTTTCATGTGACTGTTATA+TGG | - | chr2_1:1227283-1227302 | None:intergenic | 25.0% |
| !!! | TAGATATCTAGGTTTTGTTT+GGG | + | chr2_1:1227439-1227458 | Msa0186500:intron | 25.0% |
| !! | AATACTGATGAAAGCTTTTA+CGG | - | chr2_1:1227799-1227818 | None:intergenic | 25.0% |
| ! | CAACTCTATTAGTAAATTGA+CGG | + | chr2_1:1227866-1227885 | Msa0186500:intron | 25.0% |
| ! | AGAATAAACCTATTAATCTG+CGG | - | chr2_1:1227906-1227925 | None:intergenic | 25.0% |
| !!! | GTCCATTTTCAATCATTTTT+TGG | - | chr2_1:1228202-1228221 | None:intergenic | 25.0% |
| ! | AATGTAATTGAAGCTGTAAA+TGG | + | chr2_1:1228715-1228734 | Msa0186500:CDS | 25.0% |
| ! | ATGTAATTGAAGCTGTAAAT+GGG | + | chr2_1:1228716-1228735 | Msa0186500:CDS | 25.0% |
| !! | AGAGAAAAAGGTGAAAATTT+TGG | + | chr2_1:1228816-1228835 | Msa0186500:CDS | 25.0% |
| !! | ATTAAGCAAGATCATGTTTT+AGG | + | chr2_1:1229054-1229073 | Msa0186500:CDS | 25.0% |
| ! | TTGGTCAATTTTATCATAGG+GGG | - | chr2_1:1225543-1225562 | None:intergenic | 30.0% |
| ! | GAAAAGGAGGAATTTTCATT+GGG | - | chr2_1:1225593-1225612 | None:intergenic | 30.0% |
| ! | TGAAAAGGAGGAATTTTCAT+TGG | - | chr2_1:1225594-1225613 | None:intergenic | 30.0% |
| GTTATGTTTAGATGGGAAAA+TGG | - | chr2_1:1225673-1225692 | None:intergenic | 30.0% | |
| CAAATTGTTGGAAGAAATGA+AGG | - | chr2_1:1225852-1225871 | None:intergenic | 30.0% | |
| GTCATAAAAGTCACATTATC+AGG | - | chr2_1:1226081-1226100 | None:intergenic | 30.0% | |
| ATTTAACTCGGAAAAGTTTC+CGG | - | chr2_1:1226157-1226176 | None:intergenic | 30.0% | |
| GGATGAAAAAGAAAAGGAAA+AGG | + | chr2_1:1226299-1226318 | Msa0186500:CDS | 30.0% | |
| AGTGAGTGTGTTAAATCTAA+CGG | + | chr2_1:1226345-1226364 | Msa0186500:CDS | 30.0% | |
| TGTAGCAAAAAAGTAGAATC+TGG | + | chr2_1:1226471-1226490 | Msa0186500:CDS | 30.0% | |
| GTAGCAAAAAAGTAGAATCT+GGG | + | chr2_1:1226472-1226491 | Msa0186500:CDS | 30.0% | |
| AAAAAAGTAGAATCTGGGAA+AGG | + | chr2_1:1226477-1226496 | Msa0186500:CDS | 30.0% | |
| TGAAACAGTGAAAGAAATTC+AGG | + | chr2_1:1226506-1226525 | Msa0186500:CDS | 30.0% | |
| TCAAAAATTGAACTCAATCC+AGG | + | chr2_1:1226603-1226622 | Msa0186500:CDS | 30.0% | |
| CTTTGAGTAAACTATGTATG+TGG | + | chr2_1:1226851-1226870 | Msa0186500:CDS | 30.0% | |
| TGCACAATCAATATCTCTTA+AGG | - | chr2_1:1227121-1227140 | None:intergenic | 30.0% | |
| AAACATTTCCAAGAGAATGA+TGG | + | chr2_1:1227247-1227266 | Msa0186500:intron | 30.0% | |
| ! | ATTTTGTACCATCATTCTCT+TGG | - | chr2_1:1227258-1227277 | None:intergenic | 30.0% |
| TGCATTATGCAATGTAGTTT+AGG | + | chr2_1:1227378-1227397 | Msa0186500:intron | 30.0% | |
| GCATTATGCAATGTAGTTTA+GGG | + | chr2_1:1227379-1227398 | Msa0186500:intron | 30.0% | |
| !!! | CTAGATATCTAGGTTTTGTT+TGG | + | chr2_1:1227438-1227457 | Msa0186500:intron | 30.0% |
| !!! | AGATATCTAGGTTTTGTTTG+GGG | + | chr2_1:1227440-1227459 | Msa0186500:intron | 30.0% |
| TTAGTGTCTTCAACCATAAA+AGG | - | chr2_1:1227666-1227685 | None:intergenic | 30.0% | |
| !!! | TTCATTTTTTTTTCAGGCTG+AGG | + | chr2_1:1227689-1227708 | Msa0186500:intron | 30.0% |
| GTTGAGACGTATGAATAAAA+AGG | + | chr2_1:1227749-1227768 | Msa0186500:CDS | 30.0% | |
| CGTCAATTTACTAATAGAGT+TGG | - | chr2_1:1227868-1227887 | None:intergenic | 30.0% | |
| TTTGAACCTATGTAGTTAGT+TGG | + | chr2_1:1227973-1227992 | Msa0186500:intron | 30.0% | |
| GAAGTTGAATCTAGTAGAAA+TGG | + | chr2_1:1228084-1228103 | Msa0186500:intron | 30.0% | |
| ACAACTATTTGAATTCTAGC+TGG | + | chr2_1:1228117-1228136 | Msa0186500:intron | 30.0% | |
| AGAAAATCATATTCGAGACA+TGG | - | chr2_1:1228169-1228188 | None:intergenic | 30.0% | |
| !!! | CAATCATTTTTTGGTTTGCA+CGG | - | chr2_1:1228193-1228212 | None:intergenic | 30.0% |
| ! | AACAGACTGTTGTATTCTTT+TGG | + | chr2_1:1228318-1228337 | Msa0186500:intron | 30.0% |
| TTTCAACAATTTCCTGATAC+TGG | - | chr2_1:1228417-1228436 | None:intergenic | 30.0% | |
| TAAGTTCCATTTCTGTAACT+CGG | - | chr2_1:1228515-1228534 | None:intergenic | 30.0% | |
| !!! | TTGTTTTTGACCATTTGTGT+AGG | - | chr2_1:1228675-1228694 | None:intergenic | 30.0% |
| ACACAAATGGTCAAAAACAA+TGG | + | chr2_1:1228675-1228694 | Msa0186500:CDS | 30.0% | |
| ! | AAAAGGTGAAAATTTTGGAC+AGG | + | chr2_1:1228821-1228840 | Msa0186500:CDS | 30.0% |
| TTCATATAAACTAGCAGTAG+TGG | - | chr2_1:1229019-1229038 | None:intergenic | 30.0% | |
| ! | AATTTTATCATAGGGGGACT+AGG | - | chr2_1:1225537-1225556 | None:intergenic | 35.0% |
| TGGTATGAAGTGGTGTTTAT+TGG | - | chr2_1:1225562-1225581 | None:intergenic | 35.0% | |
| TTCCCATCTAAACATAACGA+TGG | + | chr2_1:1225675-1225694 | Msa0186500:exon | 35.0% | |
| TCCCATCTAAACATAACGAT+GGG | + | chr2_1:1225676-1225695 | Msa0186500:exon | 35.0% | |
| ACCCATCGTTATGTTTAGAT+GGG | - | chr2_1:1225680-1225699 | None:intergenic | 35.0% | |
| AACCCATCGTTATGTTTAGA+TGG | - | chr2_1:1225681-1225700 | None:intergenic | 35.0% | |
| ATTCGTCGATGAATTTGCAA+CGG | - | chr2_1:1225753-1225772 | None:intergenic | 35.0% | |
| CGGAAGAATCTTCAAATTGT+TGG | - | chr2_1:1225864-1225883 | None:intergenic | 35.0% | |
| ! | GATTCTTTTTCTGTATCCTC+TGG | - | chr2_1:1225991-1226010 | None:intergenic | 35.0% |
| ATCAGGAACTGAGGATAAAA+CGG | - | chr2_1:1226064-1226083 | None:intergenic | 35.0% | |
| ATCGTAAATAGGTTTGACGT+AGG | - | chr2_1:1226103-1226122 | None:intergenic | 35.0% | |
| ! | CAATTCTGCTTGGGAATTTT+TGG | + | chr2_1:1226200-1226219 | Msa0186500:CDS | 35.0% |
| CGTACTTTGAATTTCTCGTA+CGG | - | chr2_1:1226237-1226256 | None:intergenic | 35.0% | |
| TTCAAAGTACGTTACAGTCA+CGG | + | chr2_1:1226246-1226265 | Msa0186500:CDS | 35.0% | |
| !! | TTCTTTTTCATCCGTTACGT+TGG | - | chr2_1:1226292-1226311 | None:intergenic | 35.0% |
| !! | CGTAACGGATGAAAAAGAAA+AGG | + | chr2_1:1226293-1226312 | Msa0186500:CDS | 35.0% |
| GTGAGTGTGTTAAATCTAAC+GGG | + | chr2_1:1226346-1226365 | Msa0186500:CDS | 35.0% | |
| TGAGTGTGTTAAATCTAACG+GGG | + | chr2_1:1226347-1226366 | Msa0186500:CDS | 35.0% | |
| AGTGAGACAGAAAATGAAGA+AGG | + | chr2_1:1226378-1226397 | Msa0186500:CDS | 35.0% | |
| GTGAGACAGAAAATGAAGAA+GGG | + | chr2_1:1226379-1226398 | Msa0186500:CDS | 35.0% | |
| TTGCTACATTCTTCTAACTC+CGG | - | chr2_1:1226459-1226478 | None:intergenic | 35.0% | |
| ! | AATTGTACAACTTGCTTACC+TGG | - | chr2_1:1226624-1226643 | None:intergenic | 35.0% |
| TTCCACACATTTAACCATCA+GGG | - | chr2_1:1226755-1226774 | None:intergenic | 35.0% | |
| ATTCCACACATTTAACCATC+AGG | - | chr2_1:1226756-1226775 | None:intergenic | 35.0% | |
| TCAAGGAGTTTACAAAGACA+AGG | + | chr2_1:1226801-1226820 | Msa0186500:CDS | 35.0% | |
| CAAGGAGTTTACAAAGACAA+GGG | + | chr2_1:1226802-1226821 | Msa0186500:CDS | 35.0% | |
| AAGGAGTTTACAAAGACAAG+GGG | + | chr2_1:1226803-1226822 | Msa0186500:CDS | 35.0% | |
| ATCAAGTCATGGATACATGT+CGG | + | chr2_1:1227033-1227052 | Msa0186500:intron | 35.0% | |
| AAAAATTCGGAAGCTAGTCA+AGG | + | chr2_1:1227065-1227084 | Msa0186500:intron | 35.0% | |
| AAACTGATATGCAGAAGAGT+AGG | + | chr2_1:1227146-1227165 | Msa0186500:intron | 35.0% | |
| AACTGATATGCAGAAGAGTA+GGG | + | chr2_1:1227147-1227166 | Msa0186500:intron | 35.0% | |
| TTCAGTCAAACGGTTTCATT+AGG | + | chr2_1:1227348-1227367 | Msa0186500:intron | 35.0% | |
| AACCTAGATATCTAGATGTG+AGG | - | chr2_1:1227433-1227452 | None:intergenic | 35.0% | |
| ! | TCAGAGTCTTTGTTCTTTTC+TGG | + | chr2_1:1227553-1227572 | Msa0186500:intron | 35.0% |
| TGGATATCTTGTCAACTACT+TGG | - | chr2_1:1227848-1227867 | None:intergenic | 35.0% | |
| CAAGTACCAACTAACTACAT+AGG | - | chr2_1:1227982-1228001 | None:intergenic | 35.0% | |
| ! | CTATGTAGTTAGTTGGTACT+TGG | + | chr2_1:1227980-1227999 | Msa0186500:intron | 35.0% |
| AATCATATTCGAGACATGGT+CGG | - | chr2_1:1228165-1228184 | None:intergenic | 35.0% | |
| ACCTTTCATCAGTAAGTAGA+CGG | - | chr2_1:1228354-1228373 | None:intergenic | 35.0% | |
| CTTACTGATGAAAGGTTTCT+CGG | + | chr2_1:1228358-1228377 | Msa0186500:CDS | 35.0% | |
| GCATCAATATTAGCATTGCA+AGG | - | chr2_1:1228475-1228494 | None:intergenic | 35.0% | |
| TCAAATCCGAGTTACAGAAA+TGG | + | chr2_1:1228506-1228525 | Msa0186500:CDS | 35.0% | |
| GGAACTTAAGCTTCTTAGAT+TGG | + | chr2_1:1228527-1228546 | Msa0186500:CDS | 35.0% | |
| TCTTACTAGCCAATCATTCA+GGG | - | chr2_1:1228581-1228600 | None:intergenic | 35.0% | |
| ATCTTACTAGCCAATCATTC+AGG | - | chr2_1:1228582-1228601 | None:intergenic | 35.0% | |
| GCTTCAGAAGAATTCAACAT+TGG | + | chr2_1:1228783-1228802 | Msa0186500:CDS | 35.0% | |
| GAAGAATTCAACATTGGACA+AGG | + | chr2_1:1228789-1228808 | Msa0186500:CDS | 35.0% | |
| GGACAAGGAAATAGAGAAAA+AGG | + | chr2_1:1228804-1228823 | Msa0186500:CDS | 35.0% | |
| AAAGTTGGACAAAATGGTGA+AGG | + | chr2_1:1228852-1228871 | Msa0186500:CDS | 35.0% | |
| GTTCCAATTGCAAAAGAACT+GGG | + | chr2_1:1228892-1228911 | Msa0186500:CDS | 35.0% | |
| ! | GATTCTATTAGCTTACAGTC+TGG | + | chr2_1:1228955-1228974 | Msa0186500:CDS | 35.0% |
| ! | ATTTTCATTGGGAAGGGTTG+TGG | - | chr2_1:1225582-1225601 | None:intergenic | 40.0% |
| ! | GGAGGAATTTTCATTGGGAA+GGG | - | chr2_1:1225588-1225607 | None:intergenic | 40.0% |
| ! | AGGAGGAATTTTCATTGGGA+AGG | - | chr2_1:1225589-1225608 | None:intergenic | 40.0% |
| TGGAAGAAATGAAGGAGAGT+GGG | - | chr2_1:1225844-1225863 | None:intergenic | 40.0% | |
| TTGGAAGAAATGAAGGAGAG+TGG | - | chr2_1:1225845-1225864 | None:intergenic | 40.0% | |
| ! | CTAGAAGATGATTTTGAGCG+TGG | - | chr2_1:1225922-1225941 | None:intergenic | 40.0% |
| GTTCTGATTCAGAATGCAGA+GGG | - | chr2_1:1225969-1225988 | None:intergenic | 40.0% | |
| AGTCACATTATCAGGAACTG+AGG | - | chr2_1:1226073-1226092 | None:intergenic | 40.0% | |
| GGAGAGTAGGAATCGTAAAT+AGG | - | chr2_1:1226114-1226133 | None:intergenic | 40.0% | |
| AATTCCCAAGCAGAATTGCT+CGG | - | chr2_1:1226198-1226217 | None:intergenic | 40.0% | |
| TTACACTGACACCAACGTAA+CGG | + | chr2_1:1226278-1226297 | Msa0186500:CDS | 40.0% | |
| ! | GGTTCTGTTTGAAAGAGCAT+CGG | + | chr2_1:1226527-1226546 | Msa0186500:CDS | 40.0% |
| !! | TTTGAAAGAGCATCGGATTC+CGG | + | chr2_1:1226534-1226553 | Msa0186500:CDS | 40.0% |
| CATGTCCAAAATCACATTCC+CGG | - | chr2_1:1226556-1226575 | None:intergenic | 40.0% | |
| ! | ATTTTGGACATGCTAGACGT+TGG | + | chr2_1:1226564-1226583 | Msa0186500:CDS | 40.0% |
| TCCACACATTTAACCATCAG+GGG | - | chr2_1:1226754-1226773 | None:intergenic | 40.0% | |
| AAATGTGTGGAATCACCATG+TGG | + | chr2_1:1226763-1226782 | Msa0186500:CDS | 40.0% | |
| GAAGCTGTATCATGAAGTCA+AGG | + | chr2_1:1226879-1226898 | Msa0186500:CDS | 40.0% | |
| TCTTAAGGTTGCCCATGAAT+TGG | - | chr2_1:1227106-1227125 | None:intergenic | 40.0% | |
| AGATGTGAGGCTCTCAATTT+AGG | - | chr2_1:1227420-1227439 | None:intergenic | 40.0% | |
| AGCCTCACATCTAGATATCT+AGG | + | chr2_1:1227428-1227447 | Msa0186500:intron | 40.0% | |
| AATTGACGGAAGAAGAGCTT+TGG | + | chr2_1:1227880-1227899 | Msa0186500:intron | 40.0% | |
| ! | GTAGTTAGTTGGTACTTGGT+AGG | + | chr2_1:1227984-1228003 | Msa0186500:intron | 40.0% |
| CCTTTCATCAGTAAGTAGAC+GGG | - | chr2_1:1228353-1228372 | None:intergenic | 40.0% | |
| ATGAAAGGTTTCTCGGAATG+TGG | + | chr2_1:1228365-1228384 | Msa0186500:CDS | 40.0% | |
| ATGTTACAAACGCCAGTATC+AGG | + | chr2_1:1228402-1228421 | Msa0186500:CDS | 40.0% | |
| ! | TGAGGAGACATCTAAAGCTT+TGG | - | chr2_1:1228440-1228459 | None:intergenic | 40.0% |
| AATCATTCAGGGCTTTCACA+TGG | - | chr2_1:1228570-1228589 | None:intergenic | 40.0% | |
| ATGTGAAAGCCCTGAATGAT+TGG | + | chr2_1:1228569-1228588 | Msa0186500:CDS | 40.0% | |
| TGTTTGTGCTCCTACACAAA+TGG | + | chr2_1:1228662-1228681 | Msa0186500:CDS | 40.0% | |
| GGAGCAAAAGTTGGACAAAA+TGG | + | chr2_1:1228846-1228865 | Msa0186500:CDS | 40.0% | |
| GGTTCCAATTGCAAAAGAAC+TGG | + | chr2_1:1228891-1228910 | Msa0186500:CDS | 40.0% | |
| ! | TCTCCCAGTTCTTTTGCAAT+TGG | - | chr2_1:1228898-1228917 | None:intergenic | 40.0% |
| CAAAAGAACTGGGAGAAGTA+GGG | + | chr2_1:1228902-1228921 | Msa0186500:CDS | 40.0% | |
| AAAAGAACTGGGAGAAGTAG+GGG | + | chr2_1:1228903-1228922 | Msa0186500:CDS | 40.0% | |
| GAAACAGATCTTTGTTGCCA+TGG | + | chr2_1:1228981-1229000 | Msa0186500:CDS | 40.0% | |
| CGATGAATTTGCAACGGTCA+CGG | - | chr2_1:1225747-1225766 | None:intergenic | 45.0% | |
| ATGGAATCCCTCAGAACACT+TGG | + | chr2_1:1225817-1225836 | Msa0186500:CDS | 45.0% | |
| GGAAGAAATGAAGGAGAGTG+GGG | - | chr2_1:1225843-1225862 | None:intergenic | 45.0% | |
| ! | TGAGAGTGAGGGTTTGGTTT+CGG | - | chr2_1:1225887-1225906 | None:intergenic | 45.0% |
| !!! | TGGTTTTGAGAGTGAGGGTT+TGG | - | chr2_1:1225893-1225912 | None:intergenic | 45.0% |
| !!! | GGTGATGGTTTTGAGAGTGA+GGG | - | chr2_1:1225898-1225917 | None:intergenic | 45.0% |
| !!! | AGGTGATGGTTTTGAGAGTG+AGG | - | chr2_1:1225899-1225918 | None:intergenic | 45.0% |
| ! | GAAGATGATTTTGAGCGTGG+AGG | - | chr2_1:1225919-1225938 | None:intergenic | 45.0% |
| ! | GGTTCTGATTCAGAATGCAG+AGG | - | chr2_1:1225970-1225989 | None:intergenic | 45.0% |
| GCATTCTGAATCAGAACCAG+AGG | + | chr2_1:1225972-1225991 | Msa0186500:CDS | 45.0% | |
| AAAGTACGTTACAGTCACGG+TGG | + | chr2_1:1226249-1226268 | Msa0186500:CDS | 45.0% | |
| AAGTACGTTACAGTCACGGT+GGG | + | chr2_1:1226250-1226269 | Msa0186500:CDS | 45.0% | |
| !! | TTGAAAGAGCATCGGATTCC+GGG | + | chr2_1:1226535-1226554 | Msa0186500:CDS | 45.0% |
| ! | GGATTCCGGGAATGTGATTT+TGG | + | chr2_1:1226548-1226567 | Msa0186500:CDS | 45.0% |
| TCCCCTGATGGTTAAATGTG+TGG | + | chr2_1:1226750-1226769 | Msa0186500:CDS | 45.0% | |
| TGGATGCCTTTGCCAATTCA+TGG | + | chr2_1:1227091-1227110 | Msa0186500:intron | 45.0% | |
| GGATGCCTTTGCCAATTCAT+GGG | + | chr2_1:1227092-1227111 | Msa0186500:intron | 45.0% | |
| !! | ACAGCGTCGGTAGAACTATT+GGG | - | chr2_1:1227314-1227333 | None:intergenic | 45.0% |
| TGAAACCGTTTGACTGAACC+TGG | - | chr2_1:1227346-1227365 | None:intergenic | 45.0% | |
| GCTCTCAATTTAGGTGCAAG+TGG | - | chr2_1:1227411-1227430 | None:intergenic | 45.0% | |
| ! | AGCTTTGGCCGCAGATTAAT+AGG | + | chr2_1:1227895-1227914 | Msa0186500:intron | 45.0% |
| CCCGTCTACTTACTGATGAA+AGG | + | chr2_1:1228350-1228369 | Msa0186500:CDS | 45.0% | |
| GCAAGGCTTTCTGTTGAATG+AGG | - | chr2_1:1228458-1228477 | None:intergenic | 45.0% | |
| CAGAATGATTCGACTCCCTT+TGG | + | chr2_1:1228628-1228647 | Msa0186500:CDS | 45.0% | |
| ! | TTGTGTAGGAGCACAAACAC+AGG | - | chr2_1:1228661-1228680 | None:intergenic | 45.0% |
| ! | GGTGAAAATTTTGGACAGGC+AGG | + | chr2_1:1228825-1228844 | Msa0186500:CDS | 45.0% |
| GAAGGCTAGAGAGAGAAAGA+TGG | + | chr2_1:1228870-1228889 | Msa0186500:CDS | 45.0% | |
| GCAAAAGAACTGGGAGAAGT+AGG | + | chr2_1:1228901-1228920 | Msa0186500:CDS | 45.0% | |
| TATCATAGGGGGACTAGGAG+TGG | - | chr2_1:1225532-1225551 | None:intergenic | 50.0% | |
| GGAAGGGTTGTGGTATGAAG+TGG | - | chr2_1:1225572-1225591 | None:intergenic | 50.0% | |
| ! | GATTTTGAGCGTGGAGGTGA+TGG | - | chr2_1:1225913-1225932 | None:intergenic | 50.0% |
| !! | AGGATAAAACGGTGTCGTGG+TGG | - | chr2_1:1226053-1226072 | None:intergenic | 50.0% |
| ! | CTGAGGATAAAACGGTGTCG+TGG | - | chr2_1:1226056-1226075 | None:intergenic | 50.0% |
| AAGTTTCCGGTCGTGTTCGA+CGG | - | chr2_1:1226144-1226163 | None:intergenic | 50.0% | |
| TCCTCCGAGCAATTCTGCTT+GGG | + | chr2_1:1226191-1226210 | Msa0186500:CDS | 50.0% | |
| AGTACGTTACAGTCACGGTG+GGG | + | chr2_1:1226251-1226270 | Msa0186500:CDS | 50.0% | |
| ATCACCATGTGGACGCAAAG+CGG | + | chr2_1:1226774-1226793 | Msa0186500:CDS | 50.0% | |
| TCGGAAGCTAGTCAAGGAAG+TGG | + | chr2_1:1227071-1227090 | Msa0186500:intron | 50.0% | |
| GGTTGCCCATGAATTGGCAA+AGG | - | chr2_1:1227100-1227119 | None:intergenic | 50.0% | |
| !! | CACAGCGTCGGTAGAACTAT+TGG | - | chr2_1:1227315-1227334 | None:intergenic | 50.0% |
| ! | CAATAGTTCTACCGACGCTG+TGG | + | chr2_1:1227313-1227332 | Msa0186500:intron | 50.0% |
| GTACGCCAGGTTCAGTCAAA+CGG | + | chr2_1:1227338-1227357 | Msa0186500:intron | 50.0% | |
| AACACAGGTGGTGCACCAAA+GGG | - | chr2_1:1228646-1228665 | None:intergenic | 50.0% | |
| AAACACAGGTGGTGCACCAA+AGG | - | chr2_1:1228647-1228666 | None:intergenic | 50.0% | |
| ! | TGTAGGAGCACAAACACAGG+TGG | - | chr2_1:1228658-1228677 | None:intergenic | 50.0% |
| ! | AGTGGCACTGAACTTCTCCA+TGG | - | chr2_1:1229001-1229020 | None:intergenic | 50.0% |
| GCAACGCCTCAAGACTTGAC+CGG | + | chr2_1:1225701-1225720 | Msa0186500:CDS | 55.0% | |
| ! | CTCAAGACTTGACCGGCTTC+CGG | + | chr2_1:1225708-1225727 | Msa0186500:CDS | 55.0% |
| ACGGTCACGGCACAATGACA+CGG | - | chr2_1:1225734-1225753 | None:intergenic | 55.0% | |
| CATGTGTGCCACGTGTGCAT+CGG | - | chr2_1:1225800-1225819 | None:intergenic | 55.0% | |
| AGTGGGGCCAAGTGTTCTGA+GGG | - | chr2_1:1225827-1225846 | None:intergenic | 55.0% | |
| ! | GAGTGAGGGTTTGGTTTCGG+CGG | - | chr2_1:1225884-1225903 | None:intergenic | 55.0% |
| ! | CGGTGACGGCGGATTTAACT+CGG | - | chr2_1:1226169-1226188 | None:intergenic | 55.0% |
| CAAGCAGAATTGCTCGGAGG+AGG | - | chr2_1:1226192-1226211 | None:intergenic | 55.0% | |
| CTCCTCCGAGCAATTCTGCT+TGG | + | chr2_1:1226190-1226209 | Msa0186500:CDS | 55.0% | |
| TCCCAAGCAGAATTGCTCGG+AGG | - | chr2_1:1226195-1226214 | None:intergenic | 55.0% | |
| TCCTTCGTCGAATCCCCTGA+TGG | + | chr2_1:1226738-1226757 | Msa0186500:CDS | 55.0% | |
| ACCATCAGGGGATTCGACGA+AGG | - | chr2_1:1226742-1226761 | None:intergenic | 55.0% | |
| CAATCCGCTTTGCGTCCACA+TGG | - | chr2_1:1226781-1226800 | None:intergenic | 55.0% | |
| !! | GGACGCAAAGCGGATTGTCA+AGG | + | chr2_1:1226784-1226803 | Msa0186500:CDS | 55.0% |
| ! | TAGTTCTACCGACGCTGTGG+TGG | + | chr2_1:1227316-1227335 | Msa0186500:intron | 55.0% |
| GGACAGGCAGGAGCAAAAGT+TGG | + | chr2_1:1228837-1228856 | Msa0186500:CDS | 55.0% | |
| CGGAAGCCGGTCAAGTCTTG+AGG | - | chr2_1:1225710-1225729 | None:intergenic | 60.0% | |
| ACAATGACACGGCCGGAAGC+CGG | - | chr2_1:1225723-1225742 | None:intergenic | 60.0% | |
| TCACGGCACAATGACACGGC+CGG | - | chr2_1:1225730-1225749 | None:intergenic | 60.0% | |
| !! | CGGCGAGGGAGTAGCTTTGA+CGG | - | chr2_1:1225780-1225799 | None:intergenic | 60.0% |
| CGATGCACACGTGGCACACA+TGG | + | chr2_1:1225798-1225817 | Msa0186500:CDS | 60.0% | |
| GAGTGGGGCCAAGTGTTCTG+AGG | - | chr2_1:1225828-1225847 | None:intergenic | 60.0% | |
| TTTCCGGTCGTGTTCGACGG+AGG | - | chr2_1:1226141-1226160 | None:intergenic | 60.0% | |
| GCAGAATTGCTCGGAGGAGG+CGG | - | chr2_1:1226189-1226208 | None:intergenic | 60.0% | |
| CGTTACAGTCACGGTGGGGA+CGG | + | chr2_1:1226255-1226274 | Msa0186500:CDS | 60.0% | |
| ! | TGCCACGTGTGCATCGGCGA+GGG | - | chr2_1:1225794-1225813 | None:intergenic | 65.0% |
| TTGCTCGGAGGAGGCGGTGA+CGG | - | chr2_1:1226183-1226202 | None:intergenic | 65.0% | |
| CTGGCGTACCACCACAGCGT+CGG | - | chr2_1:1227327-1227346 | None:intergenic | 65.0% | |
| CTCCCTCGCCGATGCACACG+TGG | + | chr2_1:1225789-1225808 | Msa0186500:CDS | 70.0% | |
| ! | GTGCCACGTGTGCATCGGCG+AGG | - | chr2_1:1225795-1225814 | None:intergenic | 70.0% |
| CGACGGAGGCGGAGGAGAGT+AGG | - | chr2_1:1226127-1226146 | None:intergenic | 70.0% | |
| GTCGTGTTCGACGGAGGCGG+AGG | - | chr2_1:1226135-1226154 | None:intergenic | 70.0% | |
| CCGGTCGTGTTCGACGGAGG+CGG | - | chr2_1:1226138-1226157 | None:intergenic | 70.0% | |
| CCGCCTCCGTCGAACACGAC+CGG | + | chr2_1:1226135-1226154 | Msa0186500:CDS | 70.0% | |
| CGACGCTGTGGTGGTACGCC+AGG | + | chr2_1:1227325-1227344 | Msa0186500:intron | 70.0% | |
| ! | CTCGGAGGAGGCGGTGACGG+CGG | - | chr2_1:1226180-1226199 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 1225527 | 1229098 | 1225527 | ID=Msa0186500;Name=Msa0186500 |
| chr2_1 | mRNA | 1225527 | 1229098 | 1225527 | ID=Msa0186500-mRNA-1;Parent=Msa0186500;Name=Msa0186500-mRNA-1;_AED=0.11;_eAED=0.11;_QI=167|0.66|0.5|1|1|1|4|0|667 |
| chr2_1 | exon | 1225527 | 1226624 | 1225527 | ID=Msa0186500-mRNA-1:exon:532;Parent=Msa0186500-mRNA-1 |
| chr2_1 | exon | 1226713 | 1226900 | 1226713 | ID=Msa0186500-mRNA-1:exon:533;Parent=Msa0186500-mRNA-1 |
| chr2_1 | exon | 1227705 | 1227813 | 1227705 | ID=Msa0186500-mRNA-1:exon:534;Parent=Msa0186500-mRNA-1 |
| chr2_1 | exon | 1228323 | 1229098 | 1228323 | ID=Msa0186500-mRNA-1:exon:535;Parent=Msa0186500-mRNA-1 |
| chr2_1 | five_prime_UTR | 1225527 | 1225693 | 1225527 | ID=Msa0186500-mRNA-1:five_prime_utr;Parent=Msa0186500-mRNA-1 |
| chr2_1 | CDS | 1225694 | 1226624 | 1225694 | ID=Msa0186500-mRNA-1:cds;Parent=Msa0186500-mRNA-1 |
| chr2_1 | CDS | 1226713 | 1226900 | 1226713 | ID=Msa0186500-mRNA-1:cds;Parent=Msa0186500-mRNA-1 |
| chr2_1 | CDS | 1227705 | 1227813 | 1227705 | ID=Msa0186500-mRNA-1:cds;Parent=Msa0186500-mRNA-1 |
| chr2_1 | CDS | 1228323 | 1229098 | 1228323 | ID=Msa0186500-mRNA-1:cds;Parent=Msa0186500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
