Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1451700 | sp|A0A178VBJ0|APSR1_ARATH | 26.471 | 442 | 280 | 8 | 267 | 677 | 199 | 626 | 8.19e-31 | 132 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1451700 | A0A072V2N3 | 91.667 | 696 | 51 | 4 | 1 | 689 | 1 | 696 | 0.0 | 1238 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0776600 | Msa1451700 | 0.927050 | 2.015626e-91 | -8.615850e-47 |
| Msa0186500 | Msa1451700 | 0.894001 | 3.714578e-75 | -8.615850e-47 |
| Msa0385780 | Msa1451700 | 0.931554 | 3.183274e-94 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1451700 | MtrunA17_Chr3g0143731 | 91.667 | 696 | 51 | 4 | 1 | 689 | 1 | 696 | 0.0 | 1238 |
| Msa1451700 | MtrunA17_Chr3g0124841 | 31.126 | 453 | 255 | 6 | 272 | 675 | 458 | 902 | 2.98e-52 | 194 |
| Msa1451700 | MtrunA17_Chr5g0440551 | 23.588 | 797 | 423 | 21 | 1 | 678 | 1 | 730 | 5.38e-41 | 160 |
| Msa1451700 | MtrunA17_Chr1g0211271 | 26.053 | 641 | 424 | 15 | 1 | 606 | 1 | 626 | 2.40e-40 | 158 |
| Msa1451700 | MtrunA17_Chr3g0130761 | 28.507 | 442 | 264 | 13 | 272 | 672 | 344 | 774 | 6.44e-35 | 142 |
| Msa1451700 | MtrunA17_Chr4g0072011 | 27.635 | 427 | 249 | 11 | 270 | 675 | 337 | 724 | 1.37e-34 | 140 |
| Msa1451700 | MtrunA17_Chr2g0298171 | 27.556 | 450 | 260 | 15 | 270 | 686 | 534 | 950 | 1.11e-33 | 138 |
| Msa1451700 | MtrunA17_Chr2g0331821 | 25.114 | 438 | 277 | 9 | 281 | 679 | 333 | 758 | 2.19e-29 | 124 |
| Msa1451700 | MtrunA17_Chr8g0335341 | 24.206 | 661 | 414 | 16 | 1 | 610 | 1 | 625 | 5.85e-28 | 120 |
| Msa1451700 | MtrunA17_Chr5g0405741 | 26.590 | 346 | 233 | 6 | 268 | 600 | 204 | 541 | 6.77e-28 | 119 |
| Msa1451700 | MtrunA17_Chr3g0118401 | 25.855 | 468 | 250 | 16 | 268 | 678 | 327 | 754 | 5.10e-27 | 117 |
| Msa1451700 | MtrunA17_Chr7g0250681 | 25.785 | 446 | 269 | 11 | 262 | 663 | 399 | 826 | 3.06e-25 | 111 |
| Msa1451700 | MtrunA17_Chr8g0382551 | 25.926 | 459 | 266 | 15 | 1 | 407 | 1 | 437 | 3.37e-22 | 100 |
| Msa1451700 | MtrunA17_Chr4g0004471 | 27.089 | 347 | 233 | 7 | 277 | 612 | 126 | 463 | 3.82e-22 | 100 |
| Msa1451700 | MtrunA17_Chr2g0303521 | 26.038 | 265 | 170 | 7 | 355 | 602 | 296 | 551 | 1.70e-17 | 86.7 |
| Msa1451700 | MtrunA17_Chr5g0448571 | 39.130 | 115 | 39 | 4 | 1 | 94 | 1 | 105 | 8.39e-15 | 78.2 |
| Msa1451700 | MtrunA17_Chr8g0382541 | 28.235 | 170 | 106 | 4 | 433 | 595 | 1 | 161 | 1.45e-14 | 73.9 |
| Msa1451700 | MtrunA17_Chr1g0208081 | 36.667 | 90 | 51 | 1 | 356 | 439 | 8 | 97 | 2.26e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1451700 | AT1G20530.1 | 35.234 | 684 | 356 | 16 | 1 | 672 | 1 | 609 | 3.62e-105 | 333 |
| Msa1451700 | AT2G17110.1 | 32.119 | 741 | 422 | 19 | 1 | 679 | 1 | 722 | 3.44e-92 | 302 |
| Msa1451700 | AT4G35240.4 | 38.462 | 429 | 234 | 8 | 268 | 679 | 419 | 834 | 7.43e-85 | 285 |
| Msa1451700 | AT4G35240.4 | 53.571 | 56 | 25 | 1 | 1 | 56 | 1 | 55 | 4.87e-13 | 73.2 |
| Msa1451700 | AT4G35240.3 | 38.462 | 429 | 234 | 8 | 268 | 679 | 419 | 834 | 7.43e-85 | 285 |
| Msa1451700 | AT4G35240.3 | 53.571 | 56 | 25 | 1 | 1 | 56 | 1 | 55 | 4.87e-13 | 73.2 |
| Msa1451700 | AT4G35240.2 | 38.462 | 429 | 234 | 8 | 268 | 679 | 419 | 834 | 1.20e-84 | 285 |
| Msa1451700 | AT4G35240.2 | 53.571 | 56 | 25 | 1 | 1 | 56 | 1 | 55 | 5.47e-13 | 73.2 |
| Msa1451700 | AT4G35240.1 | 38.462 | 429 | 234 | 8 | 268 | 679 | 419 | 834 | 1.20e-84 | 285 |
| Msa1451700 | AT4G35240.1 | 53.571 | 56 | 25 | 1 | 1 | 56 | 1 | 55 | 5.47e-13 | 73.2 |
| Msa1451700 | AT1G77500.1 | 33.491 | 424 | 257 | 7 | 268 | 670 | 449 | 868 | 1.61e-59 | 216 |
| Msa1451700 | AT1G21740.1 | 30.286 | 525 | 274 | 10 | 235 | 678 | 434 | 947 | 2.86e-56 | 207 |
| Msa1451700 | AT4G39790.1 | 25.156 | 640 | 371 | 16 | 1 | 578 | 9 | 602 | 2.55e-41 | 160 |
| Msa1451700 | AT1G02110.1 | 25.474 | 738 | 445 | 21 | 1 | 676 | 1 | 695 | 1.97e-35 | 143 |
| Msa1451700 | AT3G51290.3 | 26.471 | 442 | 280 | 8 | 267 | 677 | 199 | 626 | 8.33e-32 | 132 |
| Msa1451700 | AT3G51290.2 | 26.185 | 443 | 280 | 9 | 267 | 677 | 199 | 626 | 1.71e-31 | 131 |
| Msa1451700 | AT2G27090.2 | 25.852 | 352 | 218 | 7 | 268 | 579 | 307 | 655 | 3.19e-30 | 127 |
| Msa1451700 | AT2G27090.1 | 25.852 | 352 | 218 | 7 | 268 | 579 | 307 | 655 | 3.19e-30 | 127 |
| Msa1451700 | AT5G54480.1 | 32.046 | 259 | 156 | 5 | 353 | 604 | 397 | 642 | 8.47e-29 | 123 |
| Msa1451700 | AT1G52320.1 | 25.236 | 424 | 278 | 8 | 281 | 673 | 339 | 754 | 1.51e-27 | 119 |
| Msa1451700 | AT1G52320.2 | 25.236 | 424 | 278 | 8 | 281 | 673 | 362 | 777 | 1.93e-27 | 119 |
| Msa1451700 | AT1G52320.5 | 25.236 | 424 | 278 | 8 | 281 | 673 | 362 | 777 | 1.93e-27 | 119 |
| Msa1451700 | AT3G51290.1 | 25.734 | 443 | 276 | 10 | 267 | 677 | 199 | 620 | 2.10e-27 | 118 |
| Msa1451700 | AT1G52320.3 | 25.472 | 424 | 277 | 8 | 281 | 673 | 36 | 451 | 3.43e-27 | 116 |
| Msa1451700 | AT1G52320.4 | 25.472 | 424 | 277 | 8 | 281 | 673 | 36 | 451 | 3.43e-27 | 116 |
| Msa1451700 | AT2G19090.1 | 31.301 | 246 | 150 | 5 | 356 | 585 | 482 | 724 | 7.16e-25 | 110 |
| Msa1451700 | AT4G30130.3 | 31.304 | 230 | 141 | 4 | 356 | 571 | 401 | 627 | 1.89e-24 | 109 |
| Msa1451700 | AT4G30130.1 | 31.304 | 230 | 141 | 4 | 356 | 571 | 401 | 627 | 1.89e-24 | 109 |
| Msa1451700 | AT3G60320.1 | 25.721 | 451 | 266 | 12 | 262 | 663 | 349 | 779 | 2.34e-23 | 106 |
| Msa1451700 | AT5G25590.1 | 23.502 | 434 | 283 | 8 | 276 | 672 | 337 | 758 | 2.07e-21 | 99.8 |
| Msa1451700 | AT2G34670.2 | 24.188 | 277 | 190 | 5 | 355 | 621 | 336 | 602 | 6.46e-16 | 82.0 |
| Msa1451700 | AT2G34670.1 | 25.229 | 218 | 146 | 4 | 355 | 565 | 336 | 543 | 1.29e-11 | 68.2 |
| Msa1451700 | AT4G30130.4 | 43.590 | 78 | 44 | 0 | 356 | 433 | 401 | 478 | 4.66e-11 | 66.2 |
| Msa1451700 | AT4G30130.2 | 43.590 | 78 | 44 | 0 | 356 | 433 | 401 | 478 | 4.66e-11 | 66.2 |
Find 140 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATTCCGGGAATGTGATTT+TGG | 0.182499 | tig0033546:-17351 | Msa1451700:CDS |
| TGAAACAGTGAAAGAAATTC+AGG | 0.247480 | tig0033546:-17393 | Msa1451700:CDS |
| ATTTAACTCGGAAAAGTTTC+CGG | 0.282554 | tig0033546:+17745 | None:intergenic |
| GTTATGTTTAGATGGGAAAA+TGG | 0.295262 | tig0033546:+18229 | None:intergenic |
| GGACAAGGAAATAGAGAAAA+AGG | 0.298355 | tig0033546:-15095 | Msa1451700:CDS |
| AACCCATCGTTATGTTTAGA+TGG | 0.301194 | tig0033546:+18221 | None:intergenic |
| TTTGAAAGAGCATCGGATTC+CGG | 0.302014 | tig0033546:-17365 | Msa1451700:CDS |
| TTTCAACAATTTCCTGATAC+TGG | 0.313090 | tig0033546:+15485 | None:intergenic |
| GGAACTTAAGCTTCTTAGAT+TGG | 0.320170 | tig0033546:-15372 | Msa1451700:CDS |
| AATGTAATTGAAGCTGTAAA+TGG | 0.333095 | tig0033546:-15184 | Msa1451700:CDS |
| GTTGAGACGTATAAATAAAA+AGG | 0.333127 | tig0033546:-16150 | Msa1451700:CDS |
| TGAGAGTGAGGGTTTGGTTT+CGG | 0.334144 | tig0033546:+18015 | None:intergenic |
| ATCTTACTAGCCAATCATTC+AGG | 0.336155 | tig0033546:+15320 | None:intergenic |
| AGCTTTGGCCGCAGATTAAT+AGG | 0.341152 | tig0033546:-16004 | Msa1451700:CDS |
| ATGTTACAAACGCCAGTATC+AGG | 0.344767 | tig0033546:-15497 | Msa1451700:CDS |
| GTCATAAAAGTCACATTATC+AGG | 0.369634 | tig0033546:+17821 | None:intergenic |
| CGGAAGAATCTTCAAATTGT+TGG | 0.372285 | tig0033546:+18038 | None:intergenic |
| AAATGAAGAAGGGAATAATA+AGG | 0.376445 | tig0033546:-17510 | Msa1451700:CDS |
| TTGAAAGAGCATCGGATTCC+GGG | 0.378220 | tig0033546:-17364 | Msa1451700:CDS |
| GGTTCCAATTGCAAAAGAAC+TGG | 0.390507 | tig0033546:-15008 | Msa1451700:CDS |
| GTGAGTGTGTTAAATCTAAC+GGG | 0.394522 | tig0033546:-17553 | Msa1451700:CDS |
| GGAGCAAAAGTTGGACAAAA+TGG | 0.395596 | tig0033546:-15053 | Msa1451700:CDS |
| GGAGAGTAGGAATCGTAAAT+AGG | 0.403861 | tig0033546:+17788 | None:intergenic |
| TGGTATGAAGTGGTGTTTAT+TGG | 0.407417 | tig0033546:+18340 | None:intergenic |
| CTCCTCCGAGCAATTCTGCT+TGG | 0.412105 | tig0033546:-17709 | Msa1451700:CDS |
| TCCTCCGAGCAATTCTGCTT+GGG | 0.412629 | tig0033546:-17708 | Msa1451700:CDS |
| TGAGGAGACATCTAAAGCTT+TGG | 0.413492 | tig0033546:+15462 | None:intergenic |
| CTCAAGACTTGACCGGCTTC+CGG | 0.416738 | tig0033546:-18191 | Msa1451700:CDS |
| CTTACTGATGAAAGGTTTCT+CGG | 0.419023 | tig0033546:-15541 | Msa1451700:intron |
| CAGAATGATTCGACTCCCTT+TGG | 0.419176 | tig0033546:-15271 | Msa1451700:CDS |
| CAAATTGTTGGAAGAAATGA+AGG | 0.422702 | tig0033546:+18050 | None:intergenic |
| CGTCAATTTACTAATAGAGT+TGG | 0.429101 | tig0033546:+16034 | None:intergenic |
| TGGATATCTTGTCAACTACT+TGG | 0.437688 | tig0033546:+16054 | None:intergenic |
| CATGTCCAAAATCACATTCC+CGG | 0.443596 | tig0033546:+17346 | None:intergenic |
| ATGTAATTGAAGCTGTAAAT+GGG | 0.444055 | tig0033546:-15183 | Msa1451700:CDS |
| ATTCCACACATTTAACCATC+AGG | 0.454962 | tig0033546:+17146 | None:intergenic |
| CAACTCTATTAGTAAATTGA+CGG | 0.477659 | tig0033546:-16033 | Msa1451700:CDS |
| GCAAAAGAACTGGGAGAAGT+AGG | 0.477697 | tig0033546:-14998 | Msa1451700:CDS |
| TCTTACTAGCCAATCATTCA+GGG | 0.478742 | tig0033546:+15321 | None:intergenic |
| TTGCTCGGAGGAGGCGGTGA+CGG | 0.480688 | tig0033546:+17719 | None:intergenic |
| AATTGACGGAAGAAGAGCTT+TGG | 0.485231 | tig0033546:-16019 | Msa1451700:CDS |
| GCAGAATTGCTCGGAGGAGG+CGG | 0.500113 | tig0033546:+17713 | None:intergenic |
| CAAAAGAACTGGGAGAAGTA+GGG | 0.500472 | tig0033546:-14997 | Msa1451700:CDS |
| GCAAGGCTTTCTGTTGAATG+AGG | 0.505492 | tig0033546:+15444 | None:intergenic |
| ATCAGGAACTGAGGATAAAA+CGG | 0.506925 | tig0033546:+17838 | None:intergenic |
| ATGTGAAAGCCCTGAATGAT+TGG | 0.508812 | tig0033546:-15330 | Msa1451700:CDS |
| GGACAGGCAGGAGCAAAAGT+TGG | 0.512631 | tig0033546:-15062 | Msa1451700:CDS |
| CTCCCTCGCCGATGCACACG+TGG | 0.512656 | tig0033546:-18110 | Msa1451700:CDS |
| ACCCATCGTTATGTTTAGAT+GGG | 0.515465 | tig0033546:+18222 | None:intergenic |
| CAAGCAGAATTGCTCGGAGG+AGG | 0.516049 | tig0033546:+17710 | None:intergenic |
| CTTTGAGTAAACTATGTATG+TGG | 0.523067 | tig0033546:-17048 | Msa1451700:CDS |
| CCGGTCGTGTTCGACGGAGG+CGG | 0.524060 | tig0033546:+17764 | None:intergenic |
| GATTCTATTAGCTTACAGTC+TGG | 0.524395 | tig0033546:-14944 | Msa1451700:CDS |
| AGTGAGTGTGTTAAATCTAA+CGG | 0.527826 | tig0033546:-17554 | Msa1451700:CDS |
| GTCGTGTTCGACGGAGGCGG+AGG | 0.528125 | tig0033546:+17767 | None:intergenic |
| CCGCCTCCGTCGAACACGAC+CGG | 0.529880 | tig0033546:-17764 | Msa1451700:CDS |
| TCAAATCCGAGTTACAGAAA+TGG | 0.530303 | tig0033546:-15393 | Msa1451700:CDS |
| CGACGGAGGCGGAGGAGAGT+AGG | 0.531019 | tig0033546:+17775 | None:intergenic |
| CGATGCACACGTGGCACACA+TGG | 0.533761 | tig0033546:-18101 | Msa1451700:CDS |
| TAAGTTCCATTTCTGTAACT+CGG | 0.534443 | tig0033546:+15387 | None:intergenic |
| TTTCAAATGAATTGAAAAGG+AGG | 0.534596 | tig0033546:+18296 | None:intergenic |
| TTGCTACATTCTTCTAACTC+CGG | 0.535557 | tig0033546:+17443 | None:intergenic |
| GAAACAGATCTTTGTTGCCA+TGG | 0.539505 | tig0033546:-14918 | Msa1451700:CDS |
| TCCCATCTAAACATAACGAT+GGG | 0.543439 | tig0033546:-18223 | Msa1451700:exon |
| ATGAAAGGTTTCTCGGAATG+TGG | 0.545233 | tig0033546:-15534 | Msa1451700:intron |
| CGGCGAGGGAGTAGCTTTGA+CGG | 0.546200 | tig0033546:+18122 | None:intergenic |
| TCCTTCGTCGAATCCCCTGA+TGG | 0.547713 | tig0033546:-17161 | Msa1451700:CDS |
| AAAGAAAAGGAAAAGGATAA+CGG | 0.551464 | tig0033546:-17593 | Msa1451700:CDS |
| TGTTTGTGCTCCTACACAAA+TGG | 0.551891 | tig0033546:-15237 | Msa1451700:CDS |
| ATGGAATCCCTCAGAACACT+TGG | 0.552322 | tig0033546:-18082 | Msa1451700:CDS |
| ACAATGACACGGCCGGAAGC+CGG | 0.553121 | tig0033546:+18179 | None:intergenic |
| AGTGAGACAGAAAATGAAGA+AGG | 0.553164 | tig0033546:-17521 | Msa1451700:CDS |
| AAGTTTCCGGTCGTGTTCGA+CGG | 0.553782 | tig0033546:+17758 | None:intergenic |
| GTGAGACAGAAAATGAAGAA+GGG | 0.555173 | tig0033546:-17520 | Msa1451700:CDS |
| TTGGAAGAAATGAAGGAGAG+TGG | 0.556169 | tig0033546:+18057 | None:intergenic |
| TTCATATAAACTAGCAGTAG+TGG | 0.556928 | tig0033546:+14883 | None:intergenic |
| AATCATTCAGGGCTTTCACA+TGG | 0.557484 | tig0033546:+15332 | None:intergenic |
| AACACAGGTGGTGCACCAAA+GGG | 0.559781 | tig0033546:+15256 | None:intergenic |
| CGGTGACGGCGGATTTAACT+CGG | 0.561880 | tig0033546:+17733 | None:intergenic |
| GCAACGCCTCAAGACTTGAC+CGG | 0.564219 | tig0033546:-18198 | Msa1451700:CDS |
| GGTTCTGTTTGAAAGAGCAT+CGG | 0.570789 | tig0033546:-17372 | Msa1451700:CDS |
| CGGAAGCCGGTCAAGTCTTG+AGG | 0.571200 | tig0033546:+18192 | None:intergenic |
| CGTTACAGTCACGGTGGGGA+CGG | 0.572758 | tig0033546:-17644 | Msa1451700:CDS |
| GCATCAATATTAGCATTGCA+AGG | 0.572965 | tig0033546:+15427 | None:intergenic |
| TGGAAGAAATGAAGGAGAGT+GGG | 0.574118 | tig0033546:+18058 | None:intergenic |
| TTCCCATCTAAACATAACGA+TGG | 0.574582 | tig0033546:-18224 | Msa1451700:exon |
| GAAGGCTAGAGAGAGAAAGA+TGG | 0.579930 | tig0033546:-15029 | Msa1451700:CDS |
| CGTACTTTGAATTTCTCGTA+CGG | 0.580664 | tig0033546:+17665 | None:intergenic |
| CGATGAATTTGCAACGGTCA+CGG | 0.581048 | tig0033546:+18155 | None:intergenic |
| GCTTCAGAAGAATTCAACAT+TGG | 0.581654 | tig0033546:-15116 | Msa1451700:CDS |
| AATTCCCAAGCAGAATTGCT+CGG | 0.583332 | tig0033546:+17704 | None:intergenic |
| AAGTACGTTACAGTCACGGT+GGG | 0.586677 | tig0033546:-17649 | Msa1451700:CDS |
| GAGTGGGGCCAAGTGTTCTG+AGG | 0.588327 | tig0033546:+18074 | None:intergenic |
| AAACACAGGTGGTGCACCAA+AGG | 0.589556 | tig0033546:+15255 | None:intergenic |
| TTACACTGACACCAACGTAA+CGG | 0.593029 | tig0033546:-17621 | Msa1451700:CDS |
| CAATCCGCTTTGCGTCCACA+TGG | 0.593447 | tig0033546:+17121 | None:intergenic |
| TCAAGGAGTTTACAAAGACA+AGG | 0.594008 | tig0033546:-17098 | Msa1451700:CDS |
| TCCACACATTTAACCATCAG+GGG | 0.594151 | tig0033546:+17148 | None:intergenic |
| TGCCACGTGTGCATCGGCGA+GGG | 0.594705 | tig0033546:+18108 | None:intergenic |
| CATGTGTGCCACGTGTGCAT+CGG | 0.595077 | tig0033546:+18102 | None:intergenic |
| CTCGGAGGAGGCGGTGACGG+CGG | 0.596358 | tig0033546:+17722 | None:intergenic |
| TTCCACACATTTAACCATCA+GGG | 0.598267 | tig0033546:+17147 | None:intergenic |
| TTCAAAGTACGTTACAGTCA+CGG | 0.598956 | tig0033546:-17653 | Msa1451700:CDS |
| TCACGGCACAATGACACGGC+CGG | 0.601932 | tig0033546:+18172 | None:intergenic |
| GTTCCAATTGCAAAAGAACT+GGG | 0.602146 | tig0033546:-15007 | Msa1451700:CDS |
| TTTGAGTAAACTATGTATGT+GGG | 0.602963 | tig0033546:-17047 | Msa1451700:CDS |
| GGAAGGGTTGTGGTATGAAG+TGG | 0.603362 | tig0033546:+18330 | None:intergenic |
| TTTCCGGTCGTGTTCGACGG+AGG | 0.608571 | tig0033546:+17761 | None:intergenic |
| CAAGGAGTTTACAAAGACAA+GGG | 0.609823 | tig0033546:-17097 | Msa1451700:CDS |
| GAAGCTGTATCATGAAGTCA+AGG | 0.612721 | tig0033546:-17020 | Msa1451700:intron |
| AAAGTTGGACAAAATGGTGA+AGG | 0.613385 | tig0033546:-15047 | Msa1451700:CDS |
| TCCCCTGATGGTTAAATGTG+TGG | 0.614115 | tig0033546:-17149 | Msa1451700:CDS |
| AGTGGGGCCAAGTGTTCTGA+GGG | 0.618801 | tig0033546:+18075 | None:intergenic |
| ACGGTCACGGCACAATGACA+CGG | 0.619706 | tig0033546:+18168 | None:intergenic |
| AGGATAAAACGGTGTCGTGG+TGG | 0.620598 | tig0033546:+17849 | None:intergenic |
| ACCATCAGGGGATTCGACGA+AGG | 0.623509 | tig0033546:+17160 | None:intergenic |
| GGTTCTGATTCAGAATGCAG+AGG | 0.623936 | tig0033546:+17932 | None:intergenic |
| GAGTGAGGGTTTGGTTTCGG+CGG | 0.628949 | tig0033546:+18018 | None:intergenic |
| GTTCTGATTCAGAATGCAGA+GGG | 0.631693 | tig0033546:+17933 | None:intergenic |
| AGTGGCACTGAACTTCTCCA+TGG | 0.633761 | tig0033546:+14901 | None:intergenic |
| GGACGCAAAGCGGATTGTCA+AGG | 0.634785 | tig0033546:-17115 | Msa1451700:CDS |
| GAAGAATTCAACATTGGACA+AGG | 0.637945 | tig0033546:-15110 | Msa1451700:CDS |
| CTGAGGATAAAACGGTGTCG+TGG | 0.638029 | tig0033546:+17846 | None:intergenic |
| GCATTCTGAATCAGAACCAG+AGG | 0.644566 | tig0033546:-17927 | Msa1451700:CDS |
| AAAAGAACTGGGAGAAGTAG+GGG | 0.650526 | tig0033546:-14996 | Msa1451700:CDS |
| ATTCGTCGATGAATTTGCAA+CGG | 0.650583 | tig0033546:+18149 | None:intergenic |
| GTGCCACGTGTGCATCGGCG+AGG | 0.651030 | tig0033546:+18107 | None:intergenic |
| AGAATAAACCTATTAATCTG+CGG | 0.652704 | tig0033546:+15996 | None:intergenic |
| ATCGTAAATAGGTTTGACGT+AGG | 0.656289 | tig0033546:+17799 | None:intergenic |
| AGTCACATTATCAGGAACTG+AGG | 0.657704 | tig0033546:+17829 | None:intergenic |
| ATCACCATGTGGACGCAAAG+CGG | 0.660013 | tig0033546:-17125 | Msa1451700:CDS |
| GGAAGAAATGAAGGAGAGTG+GGG | 0.663765 | tig0033546:+18059 | None:intergenic |
| TTGTGTAGGAGCACAAACAC+AGG | 0.670329 | tig0033546:+15241 | None:intergenic |
| AAGGAGTTTACAAAGACAAG+GGG | 0.677263 | tig0033546:-17096 | Msa1451700:CDS |
| AGTACGTTACAGTCACGGTG+GGG | 0.702538 | tig0033546:-17648 | Msa1451700:CDS |
| AAAGTACGTTACAGTCACGG+TGG | 0.707803 | tig0033546:-17650 | Msa1451700:CDS |
| TGTAGGAGCACAAACACAGG+TGG | 0.724501 | tig0033546:+15244 | None:intergenic |
| TCCCAAGCAGAATTGCTCGG+AGG | 0.746950 | tig0033546:+17707 | None:intergenic |
| TGAGTGTGTTAAATCTAACG+GGG | 0.751457 | tig0033546:-17552 | Msa1451700:CDS |
| AAATGTGTGGAATCACCATG+TGG | 0.781613 | tig0033546:-17136 | Msa1451700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAAAATTTGATATATTTAT+AGG | - | tig0033546:16381-16400 | Msa1451700:intron | 10.0% |
| !! | CAAAATTTGATATATTTATA+GGG | - | tig0033546:16382-16401 | Msa1451700:intron | 10.0% |
| !!! | TAATATTAACTTTATTTTAG+CGG | - | tig0033546:16708-16727 | Msa1451700:intron | 10.0% |
| !!! | GTAAATATTACTTATTTTTT+TGG | - | tig0033546:18315-18334 | Msa1451700:five_prime_UTR | 10.0% |
| !!! | AAAGAATTAATTGAGATTTT+TGG | - | tig0033546:15887-15906 | Msa1451700:intron | 15.0% |
| !!! | ATTATATTATATGCCTTTTA+TGG | - | tig0033546:16854-16873 | Msa1451700:intron | 15.0% |
| !!! | TAAATGTTCATTTTTTTTTC+AGG | - | tig0033546:16887-16906 | Msa1451700:intron | 15.0% |
| !! | TGTTAGATTTAAGAAAATAT+AGG | + | tig0033546:17506-17525 | None:intergenic | 15.0% |
| !!! | ATTTTTTTGGAAATAATGAA+TGG | - | tig0033546:18328-18347 | Msa1451700:five_prime_UTR | 15.0% |
| !!! | TATTGGTCATTTTTATCATA+GGG | + | tig0033546:14749-14768 | None:intergenic | 20.0% |
| !!! | TTATTGGTCATTTTTATCAT+AGG | + | tig0033546:14750-14769 | None:intergenic | 20.0% |
| !!! | TGTTTTCAAATGAATTGAAA+AGG | + | tig0033546:14813-14832 | None:intergenic | 20.0% |
| !!! | AATTTTGAAGAAAAAGTTAC+CGG | - | tig0033546:15641-15660 | Msa1451700:intron | 20.0% |
| !! | TTATTTAACTCTGTATTAGA+AGG | + | tig0033546:16150-16169 | None:intergenic | 20.0% |
| !! | TTTCATTAAAAATCAAGTCA+TGG | - | tig0033546:16226-16245 | Msa1451700:intron | 20.0% |
| !! | ATTAAGACACTTTATTCTAA+GGG | + | tig0033546:16425-16444 | None:intergenic | 20.0% |
| !! | AATTAAGACACTTTATTCTA+AGG | + | tig0033546:16426-16445 | None:intergenic | 20.0% |
| !! | TAGGTTCAAATAATTAAACA+TGG | + | tig0033546:17167-17186 | None:intergenic | 20.0% |
| !! | TTCAATCATTTCATAATAAG+TGG | + | tig0033546:17256-17275 | None:intergenic | 20.0% |
| !! | AACCAAAAAATGATTGAAAA+TGG | - | tig0033546:17401-17420 | Msa1451700:CDS | 20.0% |
| !! | ATATAAAGAAATAGTCTCAT+AGG | + | tig0033546:17431-17450 | None:intergenic | 20.0% |
| !!! | ATTGGTCATTTTTATCATAG+GGG | + | tig0033546:14748-14767 | None:intergenic | 25.0% |
| ! | TTTCAAATGAATTGAAAAGG+AGG | + | tig0033546:14810-14829 | None:intergenic | 25.0% |
| ! | GGAAAATGGAAAAAAGATAA+CGG | + | tig0033546:14863-14882 | None:intergenic | 25.0% |
| ! | AAAGAAAAGGAAAAGGATAA+CGG | - | tig0033546:15510-15529 | Msa1451700:CDS | 25.0% |
| ! | AAATGAAGAAGGGAATAATA+AGG | - | tig0033546:15593-15612 | Msa1451700:intron | 25.0% |
| !! | GATTGAGTTCAATTTTTGAA+TGG | + | tig0033546:15806-15825 | None:intergenic | 25.0% |
| ! | TTTGAGTAAACTATGTATGT+GGG | - | tig0033546:16056-16075 | Msa1451700:CDS | 25.0% |
| ! | TCGGTACATCATTAAAAATT+CGG | - | tig0033546:16256-16275 | Msa1451700:intron | 25.0% |
| !! | TTTTTCATGTGACTGTTATA+TGG | + | tig0033546:16487-16506 | None:intergenic | 25.0% |
| !!! | TAGATATCTAGGTTTTGTTT+GGG | - | tig0033546:16643-16662 | Msa1451700:intron | 25.0% |
| ! | GTTGAGACGTATAAATAAAA+AGG | - | tig0033546:16953-16972 | Msa1451700:intron | 25.0% |
| !! | AATACTGATGAAAGCTTTTA+CGG | + | tig0033546:17003-17022 | None:intergenic | 25.0% |
| ! | CAACTCTATTAGTAAATTGA+CGG | - | tig0033546:17070-17089 | Msa1451700:CDS | 25.0% |
| ! | AGAATAAACCTATTAATCTG+CGG | + | tig0033546:17110-17129 | None:intergenic | 25.0% |
| !!! | GTCCATTTTCAATCATTTTT+TGG | + | tig0033546:17406-17425 | None:intergenic | 25.0% |
| ! | AATGTAATTGAAGCTGTAAA+TGG | - | tig0033546:17919-17938 | Msa1451700:CDS | 25.0% |
| ! | ATGTAATTGAAGCTGTAAAT+GGG | - | tig0033546:17920-17939 | Msa1451700:CDS | 25.0% |
| !! | AGAGAAAAAGGTGAAAATTT+TGG | - | tig0033546:18020-18039 | Msa1451700:CDS | 25.0% |
| !! | ATTAAGCAAGATCATGTTTT+AGG | - | tig0033546:18258-18277 | Msa1451700:five_prime_UTR | 25.0% |
| !! | GTAAAACTAGTGATTTTTGT+TGG | + | tig0033546:18289-18308 | None:intergenic | 25.0% |
| !!! | TTGGTCATTTTTATCATAGG+GGG | + | tig0033546:14747-14766 | None:intergenic | 30.0% |
| ! | GAAAAGGAGGAATTTTCATT+GGG | + | tig0033546:14797-14816 | None:intergenic | 30.0% |
| ! | TGAAAAGGAGGAATTTTCAT+TGG | + | tig0033546:14798-14817 | None:intergenic | 30.0% |
| GTTATGTTTAGATGGGAAAA+TGG | + | tig0033546:14877-14896 | None:intergenic | 30.0% | |
| CAAATTGTTGGAAGAAATGA+AGG | + | tig0033546:15056-15075 | None:intergenic | 30.0% | |
| GTCATAAAAGTCACATTATC+AGG | + | tig0033546:15285-15304 | None:intergenic | 30.0% | |
| ATTTAACTCGGAAAAGTTTC+CGG | + | tig0033546:15361-15380 | None:intergenic | 30.0% | |
| GGATGAAAAAGAAAAGGAAA+AGG | - | tig0033546:15503-15522 | Msa1451700:CDS | 30.0% | |
| AGTGAGTGTGTTAAATCTAA+CGG | - | tig0033546:15549-15568 | Msa1451700:intron | 30.0% | |
| TGTAGCAAAAAAGTAGAATC+TGG | - | tig0033546:15675-15694 | Msa1451700:intron | 30.0% | |
| GTAGCAAAAAAGTAGAATCT+GGG | - | tig0033546:15676-15695 | Msa1451700:intron | 30.0% | |
| AAAAAAGTAGAATCTGGGAA+AGG | - | tig0033546:15681-15700 | Msa1451700:intron | 30.0% | |
| TGAAACAGTGAAAGAAATTC+AGG | - | tig0033546:15710-15729 | Msa1451700:intron | 30.0% | |
| TCAAAAATTGAACTCAATCC+AGG | - | tig0033546:15807-15826 | Msa1451700:intron | 30.0% | |
| CTTTGAGTAAACTATGTATG+TGG | - | tig0033546:16055-16074 | Msa1451700:CDS | 30.0% | |
| TGCACAATCAATATCTCTTA+AGG | + | tig0033546:16325-16344 | None:intergenic | 30.0% | |
| AAACATTTCCAAGAGAATGA+TGG | - | tig0033546:16451-16470 | Msa1451700:intron | 30.0% | |
| ! | ATTTTGTACCATCATTCTCT+TGG | + | tig0033546:16462-16481 | None:intergenic | 30.0% |
| TGCATTATGCAATGTAGTTT+AGG | - | tig0033546:16582-16601 | Msa1451700:intron | 30.0% | |
| GCATTATGCAATGTAGTTTA+GGG | - | tig0033546:16583-16602 | Msa1451700:intron | 30.0% | |
| !!! | CTAGATATCTAGGTTTTGTT+TGG | - | tig0033546:16642-16661 | Msa1451700:intron | 30.0% |
| !!! | AGATATCTAGGTTTTGTTTG+GGG | - | tig0033546:16644-16663 | Msa1451700:intron | 30.0% |
| TTAGTGTCTTCAACCATAAA+AGG | + | tig0033546:16870-16889 | None:intergenic | 30.0% | |
| !!! | TTCATTTTTTTTTCAGGCTG+AGG | - | tig0033546:16893-16912 | Msa1451700:intron | 30.0% |
| CGTCAATTTACTAATAGAGT+TGG | + | tig0033546:17072-17091 | None:intergenic | 30.0% | |
| TTTGAACCTATGTAGTTAGT+TGG | - | tig0033546:17177-17196 | Msa1451700:CDS | 30.0% | |
| GAAGTTGAATCTAGTAGAAA+TGG | - | tig0033546:17288-17307 | Msa1451700:intron | 30.0% | |
| ACAACTATTTGAATTCTAGC+TGG | - | tig0033546:17321-17340 | Msa1451700:CDS | 30.0% | |
| AGAAAATCATATTCGAGACA+TGG | + | tig0033546:17373-17392 | None:intergenic | 30.0% | |
| !!! | CAATCATTTTTTGGTTTGCA+CGG | + | tig0033546:17397-17416 | None:intergenic | 30.0% |
| ! | AACAGACTGTTGTATTCTTT+TGG | - | tig0033546:17522-17541 | Msa1451700:CDS | 30.0% |
| TTTCAACAATTTCCTGATAC+TGG | + | tig0033546:17621-17640 | None:intergenic | 30.0% | |
| TAAGTTCCATTTCTGTAACT+CGG | + | tig0033546:17719-17738 | None:intergenic | 30.0% | |
| !!! | TTGTTTTTGACCATTTGTGT+AGG | + | tig0033546:17879-17898 | None:intergenic | 30.0% |
| ACACAAATGGTCAAAAACAA+TGG | - | tig0033546:17879-17898 | Msa1451700:CDS | 30.0% | |
| ! | AAAAGGTGAAAATTTTGGAC+AGG | - | tig0033546:18025-18044 | Msa1451700:CDS | 30.0% |
| TTCATATAAACTAGCAGTAG+TGG | + | tig0033546:18223-18242 | None:intergenic | 30.0% | |
| !! | GAATGGTGTGAAGTATTTTA+AGG | - | tig0033546:18345-18364 | Msa1451700:five_prime_UTR | 30.0% |
| ! | ATTTTTATCATAGGGGGACT+AGG | + | tig0033546:14741-14760 | None:intergenic | 35.0% |
| TGGTATGAAGTGGTGTTTAT+TGG | + | tig0033546:14766-14785 | None:intergenic | 35.0% | |
| TTCCCATCTAAACATAACGA+TGG | - | tig0033546:14879-14898 | Msa1451700:CDS | 35.0% | |
| TCCCATCTAAACATAACGAT+GGG | - | tig0033546:14880-14899 | Msa1451700:CDS | 35.0% | |
| ACCCATCGTTATGTTTAGAT+GGG | + | tig0033546:14884-14903 | None:intergenic | 35.0% | |
| AACCCATCGTTATGTTTAGA+TGG | + | tig0033546:14885-14904 | None:intergenic | 35.0% | |
| ATTCGTCGATGAATTTGCAA+CGG | + | tig0033546:14957-14976 | None:intergenic | 35.0% | |
| CGGAAGAATCTTCAAATTGT+TGG | + | tig0033546:15068-15087 | None:intergenic | 35.0% | |
| ! | GATTCTTTTTCTGTATCCTC+TGG | + | tig0033546:15195-15214 | None:intergenic | 35.0% |
| ATCAGGAACTGAGGATAAAA+CGG | + | tig0033546:15268-15287 | None:intergenic | 35.0% | |
| ATCGTAAATAGGTTTGACGT+AGG | + | tig0033546:15307-15326 | None:intergenic | 35.0% | |
| ! | CAATTCTGCTTGGGAATTTT+TGG | - | tig0033546:15404-15423 | Msa1451700:CDS | 35.0% |
| CGTACTTTGAATTTCTCGTA+CGG | + | tig0033546:15441-15460 | None:intergenic | 35.0% | |
| TTCAAAGTACGTTACAGTCA+CGG | - | tig0033546:15450-15469 | Msa1451700:CDS | 35.0% | |
| !! | TTCTTTTTCATCCGTTACGT+TGG | + | tig0033546:15496-15515 | None:intergenic | 35.0% |
| !! | CGTAACGGATGAAAAAGAAA+AGG | - | tig0033546:15497-15516 | Msa1451700:CDS | 35.0% |
| GTGAGTGTGTTAAATCTAAC+GGG | - | tig0033546:15550-15569 | Msa1451700:intron | 35.0% | |
| TGAGTGTGTTAAATCTAACG+GGG | - | tig0033546:15551-15570 | Msa1451700:intron | 35.0% | |
| AGTGAGACAGAAAATGAAGA+AGG | - | tig0033546:15582-15601 | Msa1451700:intron | 35.0% | |
| GTGAGACAGAAAATGAAGAA+GGG | - | tig0033546:15583-15602 | Msa1451700:intron | 35.0% | |
| TTGCTACATTCTTCTAACTC+CGG | + | tig0033546:15663-15682 | None:intergenic | 35.0% | |
| ! | AATTGTACAACTTGCTTACC+TGG | + | tig0033546:15828-15847 | None:intergenic | 35.0% |
| TTCCACACATTTAACCATCA+GGG | + | tig0033546:15959-15978 | None:intergenic | 35.0% | |
| ATTCCACACATTTAACCATC+AGG | + | tig0033546:15960-15979 | None:intergenic | 35.0% | |
| TCAAGGAGTTTACAAAGACA+AGG | - | tig0033546:16005-16024 | Msa1451700:CDS | 35.0% | |
| CAAGGAGTTTACAAAGACAA+GGG | - | tig0033546:16006-16025 | Msa1451700:CDS | 35.0% | |
| AAGGAGTTTACAAAGACAAG+GGG | - | tig0033546:16007-16026 | Msa1451700:CDS | 35.0% | |
| ATCAAGTCATGGATACATGT+CGG | - | tig0033546:16237-16256 | Msa1451700:intron | 35.0% | |
| AAAAATTCGGAAGCTAGTCA+AGG | - | tig0033546:16269-16288 | Msa1451700:intron | 35.0% | |
| AAACTGATATGCAGAAGAGT+AGG | - | tig0033546:16350-16369 | Msa1451700:intron | 35.0% | |
| AACTGATATGCAGAAGAGTA+GGG | - | tig0033546:16351-16370 | Msa1451700:intron | 35.0% | |
| TTCAGTCAAACGGTTTCATT+AGG | - | tig0033546:16552-16571 | Msa1451700:intron | 35.0% | |
| AACCTAGATATCTAGATGTG+AGG | + | tig0033546:16637-16656 | None:intergenic | 35.0% | |
| ! | TCAGAGTCTTTGTTCTTTTC+TGG | - | tig0033546:16757-16776 | Msa1451700:intron | 35.0% |
| TGGATATCTTGTCAACTACT+TGG | + | tig0033546:17052-17071 | None:intergenic | 35.0% | |
| CAAGTACCAACTAACTACAT+AGG | + | tig0033546:17186-17205 | None:intergenic | 35.0% | |
| ! | CTATGTAGTTAGTTGGTACT+TGG | - | tig0033546:17184-17203 | Msa1451700:CDS | 35.0% |
| AATCATATTCGAGACATGGT+CGG | + | tig0033546:17369-17388 | None:intergenic | 35.0% | |
| ACCTTTCATCAGTAAGTAGA+CGG | + | tig0033546:17558-17577 | None:intergenic | 35.0% | |
| CTTACTGATGAAAGGTTTCT+CGG | - | tig0033546:17562-17581 | Msa1451700:CDS | 35.0% | |
| GCATCAATATTAGCATTGCA+AGG | + | tig0033546:17679-17698 | None:intergenic | 35.0% | |
| TCAAATCCGAGTTACAGAAA+TGG | - | tig0033546:17710-17729 | Msa1451700:CDS | 35.0% | |
| GGAACTTAAGCTTCTTAGAT+TGG | - | tig0033546:17731-17750 | Msa1451700:CDS | 35.0% | |
| TCTTACTAGCCAATCATTCA+GGG | + | tig0033546:17785-17804 | None:intergenic | 35.0% | |
| ATCTTACTAGCCAATCATTC+AGG | + | tig0033546:17786-17805 | None:intergenic | 35.0% | |
| GCTTCAGAAGAATTCAACAT+TGG | - | tig0033546:17987-18006 | Msa1451700:CDS | 35.0% | |
| GAAGAATTCAACATTGGACA+AGG | - | tig0033546:17993-18012 | Msa1451700:CDS | 35.0% | |
| GGACAAGGAAATAGAGAAAA+AGG | - | tig0033546:18008-18027 | Msa1451700:CDS | 35.0% | |
| AAAGTTGGACAAAATGGTGA+AGG | - | tig0033546:18056-18075 | Msa1451700:CDS | 35.0% | |
| GTTCCAATTGCAAAAGAACT+GGG | - | tig0033546:18096-18115 | Msa1451700:CDS | 35.0% | |
| ! | GATTCTATTAGCTTACAGTC+TGG | - | tig0033546:18159-18178 | Msa1451700:CDS | 35.0% |
| ! | ATTTTCATTGGGAAGGGTTG+TGG | + | tig0033546:14786-14805 | None:intergenic | 40.0% |
| ! | GGAGGAATTTTCATTGGGAA+GGG | + | tig0033546:14792-14811 | None:intergenic | 40.0% |
| ! | AGGAGGAATTTTCATTGGGA+AGG | + | tig0033546:14793-14812 | None:intergenic | 40.0% |
| TGGAAGAAATGAAGGAGAGT+GGG | + | tig0033546:15048-15067 | None:intergenic | 40.0% | |
| TTGGAAGAAATGAAGGAGAG+TGG | + | tig0033546:15049-15068 | None:intergenic | 40.0% | |
| ! | CTAGAAGATGATTTTGAGCG+TGG | + | tig0033546:15126-15145 | None:intergenic | 40.0% |
| GTTCTGATTCAGAATGCAGA+GGG | + | tig0033546:15173-15192 | None:intergenic | 40.0% | |
| AGTCACATTATCAGGAACTG+AGG | + | tig0033546:15277-15296 | None:intergenic | 40.0% | |
| GGAGAGTAGGAATCGTAAAT+AGG | + | tig0033546:15318-15337 | None:intergenic | 40.0% | |
| AATTCCCAAGCAGAATTGCT+CGG | + | tig0033546:15402-15421 | None:intergenic | 40.0% | |
| TTACACTGACACCAACGTAA+CGG | - | tig0033546:15482-15501 | Msa1451700:CDS | 40.0% | |
| ! | GGTTCTGTTTGAAAGAGCAT+CGG | - | tig0033546:15731-15750 | Msa1451700:intron | 40.0% |
| !! | TTTGAAAGAGCATCGGATTC+CGG | - | tig0033546:15738-15757 | Msa1451700:intron | 40.0% |
| CATGTCCAAAATCACATTCC+CGG | + | tig0033546:15760-15779 | None:intergenic | 40.0% | |
| ! | ATTTTGGACATGCTAGACGT+TGG | - | tig0033546:15768-15787 | Msa1451700:intron | 40.0% |
| TCCACACATTTAACCATCAG+GGG | + | tig0033546:15958-15977 | None:intergenic | 40.0% | |
| AAATGTGTGGAATCACCATG+TGG | - | tig0033546:15967-15986 | Msa1451700:intron | 40.0% | |
| GAAGCTGTATCATGAAGTCA+AGG | - | tig0033546:16083-16102 | Msa1451700:CDS | 40.0% | |
| TCTTAAGGTTGCCCATGAAT+TGG | + | tig0033546:16310-16329 | None:intergenic | 40.0% | |
| AGATGTGAGGCTCTCAATTT+AGG | + | tig0033546:16624-16643 | None:intergenic | 40.0% | |
| AGCCTCACATCTAGATATCT+AGG | - | tig0033546:16632-16651 | Msa1451700:intron | 40.0% | |
| AATTGACGGAAGAAGAGCTT+TGG | - | tig0033546:17084-17103 | Msa1451700:CDS | 40.0% | |
| ! | GTAGTTAGTTGGTACTTGGT+AGG | - | tig0033546:17188-17207 | Msa1451700:CDS | 40.0% |
| CCTTTCATCAGTAAGTAGAC+GGG | + | tig0033546:17557-17576 | None:intergenic | 40.0% | |
| ATGAAAGGTTTCTCGGAATG+TGG | - | tig0033546:17569-17588 | Msa1451700:CDS | 40.0% | |
| ATGTTACAAACGCCAGTATC+AGG | - | tig0033546:17606-17625 | Msa1451700:CDS | 40.0% | |
| ! | TGAGGAGACATCTAAAGCTT+TGG | + | tig0033546:17644-17663 | None:intergenic | 40.0% |
| AATCATTCAGGGCTTTCACA+TGG | + | tig0033546:17774-17793 | None:intergenic | 40.0% | |
| ATGTGAAAGCCCTGAATGAT+TGG | - | tig0033546:17773-17792 | Msa1451700:CDS | 40.0% | |
| TGTTTGTGCTCCTACACAAA+TGG | - | tig0033546:17866-17885 | Msa1451700:CDS | 40.0% | |
| GGAGCAAAAGTTGGACAAAA+TGG | - | tig0033546:18050-18069 | Msa1451700:CDS | 40.0% | |
| GGTTCCAATTGCAAAAGAAC+TGG | - | tig0033546:18095-18114 | Msa1451700:CDS | 40.0% | |
| ! | TCTCCCAGTTCTTTTGCAAT+TGG | + | tig0033546:18102-18121 | None:intergenic | 40.0% |
| CAAAAGAACTGGGAGAAGTA+GGG | - | tig0033546:18106-18125 | Msa1451700:CDS | 40.0% | |
| AAAAGAACTGGGAGAAGTAG+GGG | - | tig0033546:18107-18126 | Msa1451700:CDS | 40.0% | |
| GAAACAGATCTTTGTTGCCA+TGG | - | tig0033546:18185-18204 | Msa1451700:CDS | 40.0% | |
| CGATGAATTTGCAACGGTCA+CGG | + | tig0033546:14951-14970 | None:intergenic | 45.0% | |
| ATGGAATCCCTCAGAACACT+TGG | - | tig0033546:15021-15040 | Msa1451700:CDS | 45.0% | |
| GGAAGAAATGAAGGAGAGTG+GGG | + | tig0033546:15047-15066 | None:intergenic | 45.0% | |
| ! | TGAGAGTGAGGGTTTGGTTT+CGG | + | tig0033546:15091-15110 | None:intergenic | 45.0% |
| !!! | TGGTTTTGAGAGTGAGGGTT+TGG | + | tig0033546:15097-15116 | None:intergenic | 45.0% |
| !!! | GGTGATGGTTTTGAGAGTGA+GGG | + | tig0033546:15102-15121 | None:intergenic | 45.0% |
| !!! | AGGTGATGGTTTTGAGAGTG+AGG | + | tig0033546:15103-15122 | None:intergenic | 45.0% |
| ! | GAAGATGATTTTGAGCGTGG+AGG | + | tig0033546:15123-15142 | None:intergenic | 45.0% |
| ! | GGTTCTGATTCAGAATGCAG+AGG | + | tig0033546:15174-15193 | None:intergenic | 45.0% |
| GCATTCTGAATCAGAACCAG+AGG | - | tig0033546:15176-15195 | Msa1451700:CDS | 45.0% | |
| AAAGTACGTTACAGTCACGG+TGG | - | tig0033546:15453-15472 | Msa1451700:CDS | 45.0% | |
| AAGTACGTTACAGTCACGGT+GGG | - | tig0033546:15454-15473 | Msa1451700:CDS | 45.0% | |
| !! | TTGAAAGAGCATCGGATTCC+GGG | - | tig0033546:15739-15758 | Msa1451700:intron | 45.0% |
| ! | GGATTCCGGGAATGTGATTT+TGG | - | tig0033546:15752-15771 | Msa1451700:intron | 45.0% |
| TCCCCTGATGGTTAAATGTG+TGG | - | tig0033546:15954-15973 | Msa1451700:intron | 45.0% | |
| TGGATGCCTTTGCCAATTCA+TGG | - | tig0033546:16295-16314 | Msa1451700:intron | 45.0% | |
| GGATGCCTTTGCCAATTCAT+GGG | - | tig0033546:16296-16315 | Msa1451700:intron | 45.0% | |
| !! | ACAGCGTCGGTAGAACTATT+GGG | + | tig0033546:16518-16537 | None:intergenic | 45.0% |
| TGAAACCGTTTGACTGAACC+TGG | + | tig0033546:16550-16569 | None:intergenic | 45.0% | |
| GCTCTCAATTTAGGTGCAAG+TGG | + | tig0033546:16615-16634 | None:intergenic | 45.0% | |
| ! | AGCTTTGGCCGCAGATTAAT+AGG | - | tig0033546:17099-17118 | Msa1451700:CDS | 45.0% |
| CCCGTCTACTTACTGATGAA+AGG | - | tig0033546:17554-17573 | Msa1451700:CDS | 45.0% | |
| GCAAGGCTTTCTGTTGAATG+AGG | + | tig0033546:17662-17681 | None:intergenic | 45.0% | |
| CAGAATGATTCGACTCCCTT+TGG | - | tig0033546:17832-17851 | Msa1451700:CDS | 45.0% | |
| ! | TTGTGTAGGAGCACAAACAC+AGG | + | tig0033546:17865-17884 | None:intergenic | 45.0% |
| ! | GGTGAAAATTTTGGACAGGC+AGG | - | tig0033546:18029-18048 | Msa1451700:CDS | 45.0% |
| GAAGGCTAGAGAGAGAAAGA+TGG | - | tig0033546:18074-18093 | Msa1451700:CDS | 45.0% | |
| GCAAAAGAACTGGGAGAAGT+AGG | - | tig0033546:18105-18124 | Msa1451700:CDS | 45.0% | |
| TATCATAGGGGGACTAGGAG+TGG | + | tig0033546:14736-14755 | None:intergenic | 50.0% | |
| GGAAGGGTTGTGGTATGAAG+TGG | + | tig0033546:14776-14795 | None:intergenic | 50.0% | |
| ! | GATTTTGAGCGTGGAGGTGA+TGG | + | tig0033546:15117-15136 | None:intergenic | 50.0% |
| !! | AGGATAAAACGGTGTCGTGG+TGG | + | tig0033546:15257-15276 | None:intergenic | 50.0% |
| ! | CTGAGGATAAAACGGTGTCG+TGG | + | tig0033546:15260-15279 | None:intergenic | 50.0% |
| AAGTTTCCGGTCGTGTTCGA+CGG | + | tig0033546:15348-15367 | None:intergenic | 50.0% | |
| TCCTCCGAGCAATTCTGCTT+GGG | - | tig0033546:15395-15414 | Msa1451700:CDS | 50.0% | |
| AGTACGTTACAGTCACGGTG+GGG | - | tig0033546:15455-15474 | Msa1451700:CDS | 50.0% | |
| ATCACCATGTGGACGCAAAG+CGG | - | tig0033546:15978-15997 | Msa1451700:intron | 50.0% | |
| TCGGAAGCTAGTCAAGGAAG+TGG | - | tig0033546:16275-16294 | Msa1451700:intron | 50.0% | |
| GGTTGCCCATGAATTGGCAA+AGG | + | tig0033546:16304-16323 | None:intergenic | 50.0% | |
| !! | CACAGCGTCGGTAGAACTAT+TGG | + | tig0033546:16519-16538 | None:intergenic | 50.0% |
| ! | CAATAGTTCTACCGACGCTG+TGG | - | tig0033546:16517-16536 | Msa1451700:intron | 50.0% |
| GTACGCCAGGTTCAGTCAAA+CGG | - | tig0033546:16542-16561 | Msa1451700:intron | 50.0% | |
| AACACAGGTGGTGCACCAAA+GGG | + | tig0033546:17850-17869 | None:intergenic | 50.0% | |
| AAACACAGGTGGTGCACCAA+AGG | + | tig0033546:17851-17870 | None:intergenic | 50.0% | |
| ! | TGTAGGAGCACAAACACAGG+TGG | + | tig0033546:17862-17881 | None:intergenic | 50.0% |
| ! | AGTGGCACTGAACTTCTCCA+TGG | + | tig0033546:18205-18224 | None:intergenic | 50.0% |
| GCAACGCCTCAAGACTTGAC+CGG | - | tig0033546:14905-14924 | Msa1451700:CDS | 55.0% | |
| ! | CTCAAGACTTGACCGGCTTC+CGG | - | tig0033546:14912-14931 | Msa1451700:CDS | 55.0% |
| ACGGTCACGGCACAATGACA+CGG | + | tig0033546:14938-14957 | None:intergenic | 55.0% | |
| CATGTGTGCCACGTGTGCAT+CGG | + | tig0033546:15004-15023 | None:intergenic | 55.0% | |
| AGTGGGGCCAAGTGTTCTGA+GGG | + | tig0033546:15031-15050 | None:intergenic | 55.0% | |
| ! | GAGTGAGGGTTTGGTTTCGG+CGG | + | tig0033546:15088-15107 | None:intergenic | 55.0% |
| ! | CGGTGACGGCGGATTTAACT+CGG | + | tig0033546:15373-15392 | None:intergenic | 55.0% |
| CAAGCAGAATTGCTCGGAGG+AGG | + | tig0033546:15396-15415 | None:intergenic | 55.0% | |
| CTCCTCCGAGCAATTCTGCT+TGG | - | tig0033546:15394-15413 | Msa1451700:CDS | 55.0% | |
| TCCCAAGCAGAATTGCTCGG+AGG | + | tig0033546:15399-15418 | None:intergenic | 55.0% | |
| TCCTTCGTCGAATCCCCTGA+TGG | - | tig0033546:15942-15961 | Msa1451700:intron | 55.0% | |
| ACCATCAGGGGATTCGACGA+AGG | + | tig0033546:15946-15965 | None:intergenic | 55.0% | |
| CAATCCGCTTTGCGTCCACA+TGG | + | tig0033546:15985-16004 | None:intergenic | 55.0% | |
| !! | GGACGCAAAGCGGATTGTCA+AGG | - | tig0033546:15988-16007 | Msa1451700:intron | 55.0% |
| ! | TAGTTCTACCGACGCTGTGG+TGG | - | tig0033546:16520-16539 | Msa1451700:intron | 55.0% |
| GGACAGGCAGGAGCAAAAGT+TGG | - | tig0033546:18041-18060 | Msa1451700:CDS | 55.0% | |
| CGGAAGCCGGTCAAGTCTTG+AGG | + | tig0033546:14914-14933 | None:intergenic | 60.0% | |
| ACAATGACACGGCCGGAAGC+CGG | + | tig0033546:14927-14946 | None:intergenic | 60.0% | |
| TCACGGCACAATGACACGGC+CGG | + | tig0033546:14934-14953 | None:intergenic | 60.0% | |
| !! | CGGCGAGGGAGTAGCTTTGA+CGG | + | tig0033546:14984-15003 | None:intergenic | 60.0% |
| CGATGCACACGTGGCACACA+TGG | - | tig0033546:15002-15021 | Msa1451700:CDS | 60.0% | |
| GAGTGGGGCCAAGTGTTCTG+AGG | + | tig0033546:15032-15051 | None:intergenic | 60.0% | |
| TTTCCGGTCGTGTTCGACGG+AGG | + | tig0033546:15345-15364 | None:intergenic | 60.0% | |
| GCAGAATTGCTCGGAGGAGG+CGG | + | tig0033546:15393-15412 | None:intergenic | 60.0% | |
| CGTTACAGTCACGGTGGGGA+CGG | - | tig0033546:15459-15478 | Msa1451700:CDS | 60.0% | |
| ! | TGCCACGTGTGCATCGGCGA+GGG | + | tig0033546:14998-15017 | None:intergenic | 65.0% |
| TTGCTCGGAGGAGGCGGTGA+CGG | + | tig0033546:15387-15406 | None:intergenic | 65.0% | |
| CTGGCGTACCACCACAGCGT+CGG | + | tig0033546:16531-16550 | None:intergenic | 65.0% | |
| CTCCCTCGCCGATGCACACG+TGG | - | tig0033546:14993-15012 | Msa1451700:CDS | 70.0% | |
| ! | GTGCCACGTGTGCATCGGCG+AGG | + | tig0033546:14999-15018 | None:intergenic | 70.0% |
| CGACGGAGGCGGAGGAGAGT+AGG | + | tig0033546:15331-15350 | None:intergenic | 70.0% | |
| GTCGTGTTCGACGGAGGCGG+AGG | + | tig0033546:15339-15358 | None:intergenic | 70.0% | |
| CCGGTCGTGTTCGACGGAGG+CGG | + | tig0033546:15342-15361 | None:intergenic | 70.0% | |
| CCGCCTCCGTCGAACACGAC+CGG | - | tig0033546:15339-15358 | Msa1451700:CDS | 70.0% | |
| CGACGCTGTGGTGGTACGCC+AGG | - | tig0033546:16529-16548 | Msa1451700:intron | 70.0% | |
| ! | CTCGGAGGAGGCGGTGACGG+CGG | + | tig0033546:15384-15403 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0033546 | gene | 14731 | 18394 | 14731 | ID=Msa1451700;Name=Msa1451700 |
| tig0033546 | mRNA | 14731 | 18394 | 14731 | ID=Msa1451700-mRNA-1;Parent=Msa1451700;Name=Msa1451700-mRNA-1;_AED=0.08;_eAED=0.08;_QI=167|1|1|1|1|1|4|92|689 |
| tig0033546 | exon | 14731 | 15549 | 14731 | ID=Msa1451700-mRNA-1:exon:18198;Parent=Msa1451700-mRNA-1 |
| tig0033546 | exon | 15993 | 16216 | 15993 | ID=Msa1451700-mRNA-1:exon:18197;Parent=Msa1451700-mRNA-1 |
| tig0033546 | exon | 17021 | 17208 | 17021 | ID=Msa1451700-mRNA-1:exon:18196;Parent=Msa1451700-mRNA-1 |
| tig0033546 | exon | 17297 | 18394 | 17297 | ID=Msa1451700-mRNA-1:exon:18195;Parent=Msa1451700-mRNA-1 |
| tig0033546 | five_prime_UTR | 18228 | 18394 | 18228 | ID=Msa1451700-mRNA-1:five_prime_utr;Parent=Msa1451700-mRNA-1 |
| tig0033546 | CDS | 17297 | 18227 | 17297 | ID=Msa1451700-mRNA-1:cds;Parent=Msa1451700-mRNA-1 |
| tig0033546 | CDS | 17021 | 17208 | 17021 | ID=Msa1451700-mRNA-1:cds;Parent=Msa1451700-mRNA-1 |
| tig0033546 | CDS | 15993 | 16216 | 15993 | ID=Msa1451700-mRNA-1:cds;Parent=Msa1451700-mRNA-1 |
| tig0033546 | CDS | 14823 | 15549 | 14823 | ID=Msa1451700-mRNA-1:cds;Parent=Msa1451700-mRNA-1 |
| tig0033546 | three_prime_UTR | 14731 | 14822 | 14731 | ID=Msa1451700-mRNA-1:three_prime_utr;Parent=Msa1451700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
