Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0776600 | XP_013462254.1 | 91.379 | 696 | 53 | 4 | 1 | 689 | 1 | 696 | 0.0 | 1231 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0776600 | sp|A0A178VBJ0|APSR1_ARATH | 25.959 | 443 | 281 | 9 | 267 | 677 | 199 | 626 | 2.02e-30 | 130 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0776600 | A0A072V2N3 | 91.379 | 696 | 53 | 4 | 1 | 689 | 1 | 696 | 0.0 | 1231 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0776600 | Msa1451700 | 0.927050 | 2.015626e-91 | -8.615850e-47 |
| Msa0186500 | Msa0776600 | 0.860787 | 1.619511e-63 | -8.615850e-47 |
| Msa0385780 | Msa0776600 | 0.943000 | 2.641762e-102 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0776600 | MtrunA17_Chr3g0143731 | 91.379 | 696 | 53 | 4 | 1 | 689 | 1 | 696 | 0.0 | 1231 |
| Msa0776600 | MtrunA17_Chr3g0124841 | 30.108 | 465 | 252 | 8 | 268 | 675 | 454 | 902 | 4.52e-52 | 194 |
| Msa0776600 | MtrunA17_Chr1g0211271 | 26.209 | 641 | 423 | 15 | 1 | 606 | 1 | 626 | 2.06e-41 | 161 |
| Msa0776600 | MtrunA17_Chr5g0440551 | 23.648 | 795 | 425 | 23 | 1 | 678 | 1 | 730 | 8.37e-40 | 156 |
| Msa0776600 | MtrunA17_Chr4g0072011 | 27.126 | 435 | 241 | 10 | 270 | 675 | 337 | 724 | 1.45e-34 | 140 |
| Msa0776600 | MtrunA17_Chr3g0130761 | 28.281 | 442 | 265 | 13 | 272 | 672 | 344 | 774 | 8.50e-34 | 138 |
| Msa0776600 | MtrunA17_Chr2g0298171 | 27.517 | 447 | 264 | 14 | 270 | 686 | 534 | 950 | 1.18e-33 | 138 |
| Msa0776600 | MtrunA17_Chr8g0335341 | 23.817 | 676 | 398 | 14 | 1 | 610 | 1 | 625 | 5.09e-29 | 123 |
| Msa0776600 | MtrunA17_Chr2g0331821 | 25.346 | 434 | 281 | 9 | 281 | 679 | 333 | 758 | 1.42e-28 | 122 |
| Msa0776600 | MtrunA17_Chr5g0405741 | 27.035 | 344 | 234 | 6 | 268 | 600 | 204 | 541 | 1.86e-28 | 121 |
| Msa0776600 | MtrunA17_Chr3g0118401 | 25.641 | 468 | 251 | 16 | 268 | 678 | 327 | 754 | 6.13e-27 | 117 |
| Msa0776600 | MtrunA17_Chr7g0250681 | 25.561 | 446 | 270 | 11 | 262 | 663 | 399 | 826 | 7.46e-25 | 110 |
| Msa0776600 | MtrunA17_Chr8g0382551 | 26.940 | 464 | 255 | 16 | 1 | 407 | 1 | 437 | 9.08e-23 | 102 |
| Msa0776600 | MtrunA17_Chr4g0004471 | 28.679 | 265 | 180 | 4 | 352 | 612 | 204 | 463 | 7.63e-22 | 100 |
| Msa0776600 | MtrunA17_Chr2g0303521 | 26.038 | 265 | 170 | 7 | 355 | 602 | 296 | 551 | 1.58e-17 | 86.7 |
| Msa0776600 | MtrunA17_Chr5g0448571 | 39.130 | 115 | 39 | 4 | 1 | 94 | 1 | 105 | 8.17e-15 | 78.2 |
| Msa0776600 | MtrunA17_Chr8g0382541 | 28.235 | 170 | 106 | 4 | 433 | 595 | 1 | 161 | 1.49e-14 | 73.9 |
| Msa0776600 | MtrunA17_Chr1g0208081 | 35.052 | 97 | 57 | 1 | 349 | 439 | 1 | 97 | 1.19e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0776600 | AT1G20530.1 | 35.234 | 684 | 356 | 17 | 1 | 672 | 1 | 609 | 1.12e-103 | 329 |
| Msa0776600 | AT4G35240.4 | 38.462 | 429 | 234 | 8 | 268 | 679 | 419 | 834 | 4.36e-85 | 286 |
| Msa0776600 | AT4G35240.4 | 53.571 | 56 | 25 | 1 | 1 | 56 | 1 | 55 | 5.13e-13 | 73.2 |
| Msa0776600 | AT4G35240.3 | 38.462 | 429 | 234 | 8 | 268 | 679 | 419 | 834 | 4.36e-85 | 286 |
| Msa0776600 | AT4G35240.3 | 53.571 | 56 | 25 | 1 | 1 | 56 | 1 | 55 | 5.13e-13 | 73.2 |
| Msa0776600 | AT4G35240.2 | 38.462 | 429 | 234 | 8 | 268 | 679 | 419 | 834 | 5.88e-85 | 286 |
| Msa0776600 | AT4G35240.2 | 53.571 | 56 | 25 | 1 | 1 | 56 | 1 | 55 | 5.47e-13 | 73.2 |
| Msa0776600 | AT4G35240.1 | 38.462 | 429 | 234 | 8 | 268 | 679 | 419 | 834 | 5.88e-85 | 286 |
| Msa0776600 | AT4G35240.1 | 53.571 | 56 | 25 | 1 | 1 | 56 | 1 | 55 | 5.47e-13 | 73.2 |
| Msa0776600 | AT1G77500.1 | 33.255 | 424 | 258 | 7 | 268 | 670 | 449 | 868 | 4.78e-59 | 214 |
| Msa0776600 | AT1G21740.1 | 31.330 | 466 | 258 | 8 | 264 | 678 | 493 | 947 | 6.93e-57 | 209 |
| Msa0776600 | AT4G39790.1 | 25.654 | 612 | 403 | 16 | 1 | 578 | 9 | 602 | 3.11e-39 | 154 |
| Msa0776600 | AT1G02110.1 | 25.474 | 738 | 445 | 21 | 1 | 676 | 1 | 695 | 2.01e-35 | 143 |
| Msa0776600 | AT4G30130.3 | 24.025 | 641 | 403 | 15 | 1 | 571 | 1 | 627 | 4.61e-32 | 133 |
| Msa0776600 | AT4G30130.1 | 24.025 | 641 | 403 | 15 | 1 | 571 | 1 | 627 | 4.61e-32 | 133 |
| Msa0776600 | AT3G51290.3 | 25.959 | 443 | 281 | 9 | 267 | 677 | 199 | 626 | 2.06e-31 | 130 |
| Msa0776600 | AT3G51290.2 | 25.792 | 442 | 283 | 9 | 267 | 677 | 199 | 626 | 3.51e-31 | 130 |
| Msa0776600 | AT2G27090.2 | 26.536 | 358 | 208 | 8 | 268 | 579 | 307 | 655 | 3.95e-30 | 127 |
| Msa0776600 | AT2G27090.1 | 26.536 | 358 | 208 | 8 | 268 | 579 | 307 | 655 | 3.95e-30 | 127 |
| Msa0776600 | AT5G54480.1 | 32.046 | 259 | 156 | 5 | 353 | 604 | 397 | 642 | 8.32e-29 | 123 |
| Msa0776600 | AT1G52320.1 | 26.303 | 422 | 276 | 8 | 281 | 673 | 339 | 754 | 6.88e-28 | 120 |
| Msa0776600 | AT1G52320.2 | 26.303 | 422 | 276 | 8 | 281 | 673 | 362 | 777 | 8.65e-28 | 120 |
| Msa0776600 | AT1G52320.5 | 26.303 | 422 | 276 | 8 | 281 | 673 | 362 | 777 | 8.65e-28 | 120 |
| Msa0776600 | AT1G52320.3 | 26.540 | 422 | 275 | 8 | 281 | 673 | 36 | 451 | 2.58e-27 | 116 |
| Msa0776600 | AT1G52320.4 | 26.540 | 422 | 275 | 8 | 281 | 673 | 36 | 451 | 2.58e-27 | 116 |
| Msa0776600 | AT3G51290.1 | 25.508 | 443 | 277 | 10 | 267 | 677 | 199 | 620 | 4.40e-27 | 117 |
| Msa0776600 | AT2G19090.1 | 27.859 | 341 | 218 | 7 | 270 | 585 | 387 | 724 | 2.30e-25 | 112 |
| Msa0776600 | AT3G60320.1 | 25.499 | 451 | 267 | 12 | 262 | 663 | 349 | 779 | 6.65e-23 | 104 |
| Msa0776600 | AT5G25590.1 | 23.502 | 434 | 283 | 9 | 276 | 672 | 337 | 758 | 1.22e-20 | 97.4 |
| Msa0776600 | AT2G34670.2 | 24.188 | 277 | 190 | 5 | 355 | 621 | 336 | 602 | 5.92e-16 | 82.4 |
| Msa0776600 | AT2G17110.1 | 32.143 | 196 | 115 | 5 | 1 | 182 | 1 | 192 | 4.62e-15 | 79.7 |
| Msa0776600 | AT2G34670.1 | 25.229 | 218 | 146 | 4 | 355 | 565 | 336 | 543 | 1.21e-11 | 68.2 |
| Msa0776600 | AT4G30130.4 | 43.590 | 78 | 44 | 0 | 356 | 433 | 401 | 478 | 4.42e-11 | 66.6 |
| Msa0776600 | AT4G30130.2 | 43.590 | 78 | 44 | 0 | 356 | 433 | 401 | 478 | 4.42e-11 | 66.6 |
Find 138 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATTCCGGGAATGTGATTT+TGG | 0.182499 | 5_2:-54827610 | Msa0776600:CDS |
| TGAAACAGTGAAAGAAATTC+AGG | 0.247480 | 5_2:-54827652 | Msa0776600:CDS |
| ATTTAACTCGGAAAAGTTTC+CGG | 0.282554 | 5_2:+54828004 | None:intergenic |
| GTTATGTTTAGATGGGAAAA+TGG | 0.295262 | 5_2:+54828488 | None:intergenic |
| AACCCATCGTTATGTTTAGA+TGG | 0.301194 | 5_2:+54828480 | None:intergenic |
| TTTGAAAGAGCATCGGATTC+CGG | 0.302014 | 5_2:-54827624 | Msa0776600:CDS |
| TTTCAACAATTTCCTGATAC+TGG | 0.313090 | 5_2:+54825892 | None:intergenic |
| GGAACTTAAGCTTCTTAGAT+TGG | 0.320170 | 5_2:-54825779 | Msa0776600:CDS |
| AATGTAATTGAAGCTGTAAA+TGG | 0.333095 | 5_2:-54825591 | Msa0776600:CDS |
| GTTGAGACGTATAAATAAAA+AGG | 0.333127 | 5_2:-54826557 | Msa0776600:CDS |
| TGAGAGTGAGGGTTTGGTTT+CGG | 0.334144 | 5_2:+54828274 | None:intergenic |
| ATCTTACTAGCCAATCATTC+AGG | 0.336155 | 5_2:+54825727 | None:intergenic |
| AGCTTTGGCCGCAGATTAAT+AGG | 0.341152 | 5_2:-54826411 | Msa0776600:CDS |
| ATGTTACAAACGCCAGTATC+AGG | 0.344767 | 5_2:-54825904 | Msa0776600:CDS |
| GTCATAAAAGTCACATTATC+AGG | 0.369634 | 5_2:+54828080 | None:intergenic |
| CGGAAGAATCTTCAAATTGT+TGG | 0.372285 | 5_2:+54828297 | None:intergenic |
| AAATGAAGAAGGGAATAATA+AGG | 0.376445 | 5_2:-54827769 | Msa0776600:CDS |
| TTGAAAGAGCATCGGATTCC+GGG | 0.378220 | 5_2:-54827623 | Msa0776600:CDS |
| GGTTCCAATTGCAAAAGAAC+TGG | 0.390507 | 5_2:-54825415 | Msa0776600:CDS |
| GGAGCAAAAGTTGGACAAAA+TGG | 0.395596 | 5_2:-54825460 | Msa0776600:CDS |
| GGAGAGTAGGAATCGTAAAT+AGG | 0.403861 | 5_2:+54828047 | None:intergenic |
| TGGTATGAAGTGGTGTTTAT+TGG | 0.407417 | 5_2:+54828599 | None:intergenic |
| CTCCTCCGAGCAATTCTGCT+TGG | 0.412105 | 5_2:-54827968 | Msa0776600:CDS |
| TCCTCCGAGCAATTCTGCTT+GGG | 0.412629 | 5_2:-54827967 | Msa0776600:CDS |
| TGAGGAGACATCTAAAGCTT+TGG | 0.413492 | 5_2:+54825869 | None:intergenic |
| CTCAAGACTTGACCGGCTTC+CGG | 0.416738 | 5_2:-54828450 | Msa0776600:CDS |
| CATTTCCAAAATCACATTCC+CGG | 0.416886 | 5_2:+54827605 | None:intergenic |
| CTTACTGATGAAAGGTTTCT+CGG | 0.419023 | 5_2:-54825948 | Msa0776600:intron |
| CAGAATGATTCGACTCCCTT+TGG | 0.419176 | 5_2:-54825678 | Msa0776600:CDS |
| CAAATTGTTGGAAGAAATGA+AGG | 0.422702 | 5_2:+54828309 | None:intergenic |
| CGTCAATTTACTAATAGAGT+TGG | 0.429101 | 5_2:+54826441 | None:intergenic |
| TGGATATCTTGTCAACTACT+TGG | 0.437688 | 5_2:+54826461 | None:intergenic |
| ATGTAATTGAAGCTGTAAAT+GGG | 0.444055 | 5_2:-54825590 | Msa0776600:CDS |
| ATTCCACACATTTAACCATC+AGG | 0.454962 | 5_2:+54827405 | None:intergenic |
| CAACTCTATTAGTAAATTGA+CGG | 0.477659 | 5_2:-54826440 | Msa0776600:CDS |
| GCAAAAGAACTGGGAGAAGT+AGG | 0.477697 | 5_2:-54825405 | Msa0776600:CDS |
| TCTTACTAGCCAATCATTCA+GGG | 0.478742 | 5_2:+54825728 | None:intergenic |
| TTGCTCGGAGGAGGCGGTGA+CGG | 0.480688 | 5_2:+54827978 | None:intergenic |
| AATTGACGGAAGAAGAGCTT+TGG | 0.485231 | 5_2:-54826426 | Msa0776600:CDS |
| GCAGAATTGCTCGGAGGAGG+CGG | 0.500113 | 5_2:+54827972 | None:intergenic |
| CAAAAGAACTGGGAGAAGTA+GGG | 0.500472 | 5_2:-54825404 | Msa0776600:CDS |
| GCAAGGCTTTCTGTTGAATG+AGG | 0.505492 | 5_2:+54825851 | None:intergenic |
| ATCAGGAACTGAGGATAAAA+CGG | 0.506925 | 5_2:+54828097 | None:intergenic |
| ATGTGAAAGCCCTGAATGAT+TGG | 0.508812 | 5_2:-54825737 | Msa0776600:CDS |
| TCCTTCGTCGAATCCCCTGA+TGG | 0.509395 | 5_2:-54827420 | Msa0776600:CDS |
| GGACAGGCAGGAGCAAAAGT+TGG | 0.512631 | 5_2:-54825469 | Msa0776600:CDS |
| CTCCCTCGCCGATGCACACG+TGG | 0.512656 | 5_2:-54828369 | Msa0776600:CDS |
| ACCCATCGTTATGTTTAGAT+GGG | 0.515465 | 5_2:+54828481 | None:intergenic |
| CAAGCAGAATTGCTCGGAGG+AGG | 0.516049 | 5_2:+54827969 | None:intergenic |
| CTTTGAGTAAACTATGTATG+TGG | 0.523067 | 5_2:-54827307 | Msa0776600:CDS |
| CCGGTCGTGTTCGACGGAGG+CGG | 0.524060 | 5_2:+54828023 | None:intergenic |
| GATTCTATTAGCTTACAGTC+TGG | 0.524395 | 5_2:-54825351 | Msa0776600:CDS |
| GTCGTGTTCGACGGAGGCGG+AGG | 0.528125 | 5_2:+54828026 | None:intergenic |
| CCGCCTCCGTCGAACACGAC+CGG | 0.529880 | 5_2:-54828023 | Msa0776600:CDS |
| TCAAATCCGAGTTACAGAAA+TGG | 0.530303 | 5_2:-54825800 | Msa0776600:CDS |
| CGACGGAGGCGGAGGAGAGT+AGG | 0.531019 | 5_2:+54828034 | None:intergenic |
| CGATGCACACGTGGCACACA+TGG | 0.533761 | 5_2:-54828360 | Msa0776600:CDS |
| TAAGTTCCATTTCTGTAACT+CGG | 0.534443 | 5_2:+54825794 | None:intergenic |
| TTTCAAATGAATTGAAAAGG+AGG | 0.534596 | 5_2:+54828555 | None:intergenic |
| TTGCTACATTCTTCTAACTC+CGG | 0.535557 | 5_2:+54827702 | None:intergenic |
| GAAACAGATCTTTGTTGCCA+TGG | 0.539505 | 5_2:-54825325 | Msa0776600:CDS |
| TCCCATCTAAACATAACGAT+GGG | 0.543439 | 5_2:-54828482 | Msa0776600:exon |
| ATGAAAGGTTTCTCGGAATG+TGG | 0.545233 | 5_2:-54825941 | Msa0776600:intron |
| CGGCGAGGGAGTAGCTTTGA+CGG | 0.546200 | 5_2:+54828381 | None:intergenic |
| AAAGAAAAGGAAAAGGATAA+CGG | 0.551464 | 5_2:-54827852 | Msa0776600:CDS |
| TGTTTGTGCTCCTACACAAA+TGG | 0.551891 | 5_2:-54825644 | Msa0776600:CDS |
| ATGGAATCCCTCAGAACACT+TGG | 0.552322 | 5_2:-54828341 | Msa0776600:CDS |
| ACAATGACACGGCCGGAAGC+CGG | 0.553121 | 5_2:+54828438 | None:intergenic |
| AAGTTTCCGGTCGTGTTCGA+CGG | 0.553782 | 5_2:+54828017 | None:intergenic |
| TTGGAAGAAATGAAGGAGAG+TGG | 0.556169 | 5_2:+54828316 | None:intergenic |
| TTCATATAAACTAGCAGTAG+TGG | 0.556928 | 5_2:+54825290 | None:intergenic |
| AATCATTCAGGGCTTTCACA+TGG | 0.557484 | 5_2:+54825739 | None:intergenic |
| AACACAGGTGGTGCACCAAA+GGG | 0.559781 | 5_2:+54825663 | None:intergenic |
| CGGTGACGGCGGATTTAACT+CGG | 0.561880 | 5_2:+54827992 | None:intergenic |
| GCAACGCCTCAAGACTTGAC+CGG | 0.564219 | 5_2:-54828457 | Msa0776600:CDS |
| AGTGTGACAGAAAATGAAGA+AGG | 0.568169 | 5_2:-54827780 | Msa0776600:CDS |
| GGTTCTGTTTGAAAGAGCAT+CGG | 0.570789 | 5_2:-54827631 | Msa0776600:CDS |
| CGGAAGCCGGTCAAGTCTTG+AGG | 0.571200 | 5_2:+54828451 | None:intergenic |
| CGTTACAGTCACGGTGGGGA+CGG | 0.572758 | 5_2:-54827903 | Msa0776600:CDS |
| GCATCAATATTAGCATTGCA+AGG | 0.572965 | 5_2:+54825834 | None:intergenic |
| TGGAAGAAATGAAGGAGAGT+GGG | 0.574118 | 5_2:+54828317 | None:intergenic |
| TTCCCATCTAAACATAACGA+TGG | 0.574582 | 5_2:-54828483 | Msa0776600:exon |
| AGTGAGTGTGTTAAATCTAA+CGG | 0.578704 | 5_2:-54827813 | Msa0776600:CDS |
| GAAGGCTAGAGAGAGAAAGA+TGG | 0.579930 | 5_2:-54825436 | Msa0776600:CDS |
| CGTACTTTGAATTTCTCGTA+CGG | 0.580664 | 5_2:+54827924 | None:intergenic |
| CGATGAATTTGCAACGGTCA+CGG | 0.581048 | 5_2:+54828414 | None:intergenic |
| GCTTCAGAAGAATTCAACAT+TGG | 0.581654 | 5_2:-54825523 | Msa0776600:CDS |
| AATTCCCAAGCAGAATTGCT+CGG | 0.583332 | 5_2:+54827963 | None:intergenic |
| AAGTACGTTACAGTCACGGT+GGG | 0.586677 | 5_2:-54827908 | Msa0776600:CDS |
| GAGTGGGGCCAAGTGTTCTG+AGG | 0.588327 | 5_2:+54828333 | None:intergenic |
| AAACACAGGTGGTGCACCAA+AGG | 0.589556 | 5_2:+54825662 | None:intergenic |
| GTGTGACAGAAAATGAAGAA+GGG | 0.591937 | 5_2:-54827779 | Msa0776600:CDS |
| TTACACTGACACCAACGTAA+CGG | 0.593029 | 5_2:-54827880 | Msa0776600:CDS |
| CAATCCGCTTTGCGTCCACA+TGG | 0.593447 | 5_2:+54827380 | None:intergenic |
| TCAAGGAGTTTACAAAGACA+AGG | 0.594008 | 5_2:-54827357 | Msa0776600:CDS |
| TCCACACATTTAACCATCAG+GGG | 0.594151 | 5_2:+54827407 | None:intergenic |
| TGCCACGTGTGCATCGGCGA+GGG | 0.594705 | 5_2:+54828367 | None:intergenic |
| CATGTGTGCCACGTGTGCAT+CGG | 0.595077 | 5_2:+54828361 | None:intergenic |
| CTCGGAGGAGGCGGTGACGG+CGG | 0.596358 | 5_2:+54827981 | None:intergenic |
| TTCCACACATTTAACCATCA+GGG | 0.598267 | 5_2:+54827406 | None:intergenic |
| TTCAAAGTACGTTACAGTCA+CGG | 0.598956 | 5_2:-54827912 | Msa0776600:CDS |
| TCACGGCACAATGACACGGC+CGG | 0.601932 | 5_2:+54828431 | None:intergenic |
| GTTCCAATTGCAAAAGAACT+GGG | 0.602146 | 5_2:-54825414 | Msa0776600:CDS |
| TTTGAGTAAACTATGTATGT+GGG | 0.602963 | 5_2:-54827306 | Msa0776600:CDS |
| GGAAGGGTTGTGGTATGAAG+TGG | 0.603362 | 5_2:+54828589 | None:intergenic |
| TTTCCGGTCGTGTTCGACGG+AGG | 0.608571 | 5_2:+54828020 | None:intergenic |
| CAAGGAGTTTACAAAGACAA+GGG | 0.609823 | 5_2:-54827356 | Msa0776600:CDS |
| GAAGCTGTATCATGAAGTCA+AGG | 0.612721 | 5_2:-54827279 | Msa0776600:intron |
| AAAGTTGGACAAAATGGTGA+AGG | 0.613385 | 5_2:-54825454 | Msa0776600:CDS |
| TCCCCTGATGGTTAAATGTG+TGG | 0.614115 | 5_2:-54827408 | Msa0776600:CDS |
| AGTGGGGCCAAGTGTTCTGA+GGG | 0.618801 | 5_2:+54828334 | None:intergenic |
| ACGGTCACGGCACAATGACA+CGG | 0.619706 | 5_2:+54828427 | None:intergenic |
| AGGATAAAACGGTGTCGTGG+TGG | 0.620598 | 5_2:+54828108 | None:intergenic |
| ACCATCAGGGGATTCGACGA+AGG | 0.623509 | 5_2:+54827419 | None:intergenic |
| GGTTCTGATTCAGAATGCAG+AGG | 0.623936 | 5_2:+54828191 | None:intergenic |
| GAGTGAGGGTTTGGTTTCGG+CGG | 0.628949 | 5_2:+54828277 | None:intergenic |
| GTTCTGATTCAGAATGCAGA+GGG | 0.631693 | 5_2:+54828192 | None:intergenic |
| AGTGGCACTGAACTTCTCCA+TGG | 0.633761 | 5_2:+54825308 | None:intergenic |
| GGACGCAAAGCGGATTGTCA+AGG | 0.634785 | 5_2:-54827374 | Msa0776600:CDS |
| GAAGAATTCAACATTGGACA+AGG | 0.637945 | 5_2:-54825517 | Msa0776600:CDS |
| CTGAGGATAAAACGGTGTCG+TGG | 0.638029 | 5_2:+54828105 | None:intergenic |
| AACGCATGCATAATCTTGCA+CGG | 0.638105 | 5_2:+54827443 | None:intergenic |
| GCATTCTGAATCAGAACCAG+AGG | 0.644566 | 5_2:-54828186 | Msa0776600:CDS |
| AAAAGAACTGGGAGAAGTAG+GGG | 0.650526 | 5_2:-54825403 | Msa0776600:CDS |
| ATTCGTCGATGAATTTGCAA+CGG | 0.650583 | 5_2:+54828408 | None:intergenic |
| GTGCCACGTGTGCATCGGCG+AGG | 0.651030 | 5_2:+54828366 | None:intergenic |
| AGAATAAACCTATTAATCTG+CGG | 0.652704 | 5_2:+54826403 | None:intergenic |
| ATCGTAAATAGGTTTGACGT+AGG | 0.656289 | 5_2:+54828058 | None:intergenic |
| AGTCACATTATCAGGAACTG+AGG | 0.657704 | 5_2:+54828088 | None:intergenic |
| ATCACCATGTGGACGCAAAG+CGG | 0.660013 | 5_2:-54827384 | Msa0776600:CDS |
| GGAAGAAATGAAGGAGAGTG+GGG | 0.663765 | 5_2:+54828318 | None:intergenic |
| TTGTGTAGGAGCACAAACAC+AGG | 0.670329 | 5_2:+54825648 | None:intergenic |
| AAGGAGTTTACAAAGACAAG+GGG | 0.677263 | 5_2:-54827355 | Msa0776600:CDS |
| AGTACGTTACAGTCACGGTG+GGG | 0.702538 | 5_2:-54827907 | Msa0776600:CDS |
| AAAGTACGTTACAGTCACGG+TGG | 0.707803 | 5_2:-54827909 | Msa0776600:CDS |
| TGTAGGAGCACAAACACAGG+TGG | 0.724501 | 5_2:+54825651 | None:intergenic |
| TCCCAAGCAGAATTGCTCGG+AGG | 0.746950 | 5_2:+54827966 | None:intergenic |
| AAATGTGTGGAATCACCATG+TGG | 0.781613 | 5_2:-54827395 | Msa0776600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAAAATTTGATATATTTAT+AGG | - | chr5_2:54826640-54826659 | Msa0776600:intron | 10.0% |
| !! | CAAAATTTGATATATTTATA+GGG | - | chr5_2:54826641-54826660 | Msa0776600:intron | 10.0% |
| !!! | TAATATTAACTTTATTTTAG+CGG | - | chr5_2:54826967-54826986 | Msa0776600:intron | 10.0% |
| !!! | GTAAATATTACTTATTTTTT+TGG | - | chr5_2:54828574-54828593 | Msa0776600:five_prime_UTR | 10.0% |
| !!! | AAAGAATTAATTGAGATTTT+TGG | - | chr5_2:54826294-54826313 | Msa0776600:intron | 15.0% |
| !!! | ATTATATTATATGCCTTTTA+TGG | - | chr5_2:54827113-54827132 | Msa0776600:intron | 15.0% |
| !!! | TAAATGTTCATTTTTTTTTC+AGG | - | chr5_2:54827146-54827165 | Msa0776600:intron | 15.0% |
| !! | TGTTAGATTTAAGAAAATAT+AGG | + | chr5_2:54827765-54827784 | None:intergenic | 15.0% |
| !!! | ATTTTTTTGGAAATAATGAA+TGG | - | chr5_2:54828587-54828606 | Msa0776600:five_prime_UTR | 15.0% |
| !!! | TATTGGTCAATTTTATCATA+GGG | + | chr5_2:54825156-54825175 | None:intergenic | 20.0% |
| !!! | TTATTGGTCAATTTTATCAT+AGG | + | chr5_2:54825157-54825176 | None:intergenic | 20.0% |
| !!! | TGTTTTCAAATGAATTGAAA+AGG | + | chr5_2:54825220-54825239 | None:intergenic | 20.0% |
| !!! | AATTTTGAAGAAAAAGTTAC+CGG | - | chr5_2:54826048-54826067 | Msa0776600:intron | 20.0% |
| !! | TTATTTAACTCTGTATTAGA+TGG | + | chr5_2:54826557-54826576 | None:intergenic | 20.0% |
| !! | ATTAAGACACTTTATTCTAA+GGG | + | chr5_2:54826684-54826703 | None:intergenic | 20.0% |
| !! | AATTAAGACACTTTATTCTA+AGG | + | chr5_2:54826685-54826704 | None:intergenic | 20.0% |
| !! | TAGGTTCAAATAATTAAACA+TGG | + | chr5_2:54827426-54827445 | None:intergenic | 20.0% |
| !! | TTCAATCATTTCATAATAAG+TGG | + | chr5_2:54827515-54827534 | None:intergenic | 20.0% |
| !! | AACCAAAAAATGATTGAAAA+TGG | - | chr5_2:54827660-54827679 | Msa0776600:CDS | 20.0% |
| !! | ATATAAAGAAATAGTCTCAT+AGG | + | chr5_2:54827690-54827709 | None:intergenic | 20.0% |
| !!! | AGAGAAAAAAGTGAAAATTT+TGG | - | chr5_2:54828279-54828298 | Msa0776600:CDS | 20.0% |
| !! | ATTGGTCAATTTTATCATAG+GGG | + | chr5_2:54825155-54825174 | None:intergenic | 25.0% |
| ! | TTTCAAATGAATTGAAAAGG+AGG | + | chr5_2:54825217-54825236 | None:intergenic | 25.0% |
| ! | AAAGAAAAGGAAAAGGATAA+CGG | - | chr5_2:54825917-54825936 | Msa0776600:CDS | 25.0% |
| ! | AAATGAAGAAGGGAATAATA+AGG | - | chr5_2:54826000-54826019 | Msa0776600:intron | 25.0% |
| !! | GATTGAGTTCAATTTTTGAA+TGG | + | chr5_2:54826213-54826232 | None:intergenic | 25.0% |
| ! | TTTGAGTAAACTATGTATGT+GGG | - | chr5_2:54826463-54826482 | Msa0776600:CDS | 25.0% |
| !! | TTTTTCATGTGACTGTTATA+TGG | + | chr5_2:54826746-54826765 | None:intergenic | 25.0% |
| !!! | TAGATATCTAGGTTTTGTTT+GGG | - | chr5_2:54826902-54826921 | Msa0776600:intron | 25.0% |
| ! | GTTGAGACGTATAAATAAAA+AGG | - | chr5_2:54827212-54827231 | Msa0776600:intron | 25.0% |
| !! | AATACTGATGAAAGCTTTTA+CGG | + | chr5_2:54827262-54827281 | None:intergenic | 25.0% |
| ! | CAACTCTATTAGTAAATTGA+CGG | - | chr5_2:54827329-54827348 | Msa0776600:CDS | 25.0% |
| ! | AGAATAAACCTATTAATCTG+CGG | + | chr5_2:54827369-54827388 | None:intergenic | 25.0% |
| !!! | GTCCATTTTCAATCATTTTT+TGG | + | chr5_2:54827665-54827684 | None:intergenic | 25.0% |
| ! | AATGTAATTGAAGCTGTAAA+TGG | - | chr5_2:54828178-54828197 | Msa0776600:CDS | 25.0% |
| ! | ATGTAATTGAAGCTGTAAAT+GGG | - | chr5_2:54828179-54828198 | Msa0776600:CDS | 25.0% |
| !! | AAAAAGTGAAAATTTTGGAC+AGG | - | chr5_2:54828284-54828303 | Msa0776600:CDS | 25.0% |
| !! | ATTAAGCAAGATCATGTTTT+AGG | - | chr5_2:54828517-54828536 | Msa0776600:five_prime_UTR | 25.0% |
| !! | GTAAAACTAGTGATTTTTGT+TGG | + | chr5_2:54828548-54828567 | None:intergenic | 25.0% |
| ! | TTGGTCAATTTTATCATAGG+GGG | + | chr5_2:54825154-54825173 | None:intergenic | 30.0% |
| ! | GAAAAGGAGGAATTTTCATT+GGG | + | chr5_2:54825204-54825223 | None:intergenic | 30.0% |
| ! | TGAAAAGGAGGAATTTTCAT+TGG | + | chr5_2:54825205-54825224 | None:intergenic | 30.0% |
| GTTATGTTTAGATGGGAAAA+TGG | + | chr5_2:54825284-54825303 | None:intergenic | 30.0% | |
| CAAATTGTTGGAAGAAATGA+AGG | + | chr5_2:54825463-54825482 | None:intergenic | 30.0% | |
| GTCATAAAAGTCACATTATC+AGG | + | chr5_2:54825692-54825711 | None:intergenic | 30.0% | |
| ATTTAACTCGGAAAAGTTTC+CGG | + | chr5_2:54825768-54825787 | None:intergenic | 30.0% | |
| GGATGAAAAAGAAAAGGAAA+AGG | - | chr5_2:54825910-54825929 | Msa0776600:CDS | 30.0% | |
| AGTGAGTGTGTTAAATCTAA+CGG | - | chr5_2:54825956-54825975 | Msa0776600:intron | 30.0% | |
| TGTAGCAAAAAAGTAGAATC+TGG | - | chr5_2:54826082-54826101 | Msa0776600:intron | 30.0% | |
| GTAGCAAAAAAGTAGAATCT+GGG | - | chr5_2:54826083-54826102 | Msa0776600:intron | 30.0% | |
| AAAAAAGTAGAATCTGGGAA+AGG | - | chr5_2:54826088-54826107 | Msa0776600:intron | 30.0% | |
| TGAAACAGTGAAAGAAATTC+AGG | - | chr5_2:54826117-54826136 | Msa0776600:intron | 30.0% | |
| TCAAAAATTGAACTCAATCC+AGG | - | chr5_2:54826214-54826233 | Msa0776600:intron | 30.0% | |
| CTTTGAGTAAACTATGTATG+TGG | - | chr5_2:54826462-54826481 | Msa0776600:CDS | 30.0% | |
| AAACATTTCCAAGAGAATGA+TGG | - | chr5_2:54826710-54826729 | Msa0776600:intron | 30.0% | |
| ! | ATTTTGTACCATCATTCTCT+TGG | + | chr5_2:54826721-54826740 | None:intergenic | 30.0% |
| TGCATTATGCAATGTAGTTT+AGG | - | chr5_2:54826841-54826860 | Msa0776600:intron | 30.0% | |
| GCATTATGCAATGTAGTTTA+GGG | - | chr5_2:54826842-54826861 | Msa0776600:intron | 30.0% | |
| !!! | CTAGATATCTAGGTTTTGTT+TGG | - | chr5_2:54826901-54826920 | Msa0776600:intron | 30.0% |
| !!! | AGATATCTAGGTTTTGTTTG+GGG | - | chr5_2:54826903-54826922 | Msa0776600:intron | 30.0% |
| TTAGTGTCTTCAACCATAAA+AGG | + | chr5_2:54827129-54827148 | None:intergenic | 30.0% | |
| !!! | TTCATTTTTTTTTCAGGCTG+AGG | - | chr5_2:54827152-54827171 | Msa0776600:intron | 30.0% |
| CGTCAATTTACTAATAGAGT+TGG | + | chr5_2:54827331-54827350 | None:intergenic | 30.0% | |
| TTTGAACCTATGTAGTTAGT+TGG | - | chr5_2:54827436-54827455 | Msa0776600:CDS | 30.0% | |
| GAAGTTGAATCTAGTAGAAA+TGG | - | chr5_2:54827547-54827566 | Msa0776600:intron | 30.0% | |
| ACAACTATTTGAATTCTAGC+TGG | - | chr5_2:54827580-54827599 | Msa0776600:CDS | 30.0% | |
| AGAAAATCATATTCGAGACA+TGG | + | chr5_2:54827632-54827651 | None:intergenic | 30.0% | |
| !!! | CAATCATTTTTTGGTTTGCA+CGG | + | chr5_2:54827656-54827675 | None:intergenic | 30.0% |
| ! | AACAGACTGTTGTATTCTTT+TGG | - | chr5_2:54827781-54827800 | Msa0776600:CDS | 30.0% |
| TTTCAACAATTTCCTGATAC+TGG | + | chr5_2:54827880-54827899 | None:intergenic | 30.0% | |
| TAAGTTCCATTTCTGTAACT+CGG | + | chr5_2:54827978-54827997 | None:intergenic | 30.0% | |
| !!! | TTGTTTTTGACCATTTGTGT+AGG | + | chr5_2:54828138-54828157 | None:intergenic | 30.0% |
| ACACAAATGGTCAAAAACAA+TGG | - | chr5_2:54828138-54828157 | Msa0776600:CDS | 30.0% | |
| TTCATATAAACTAGCAGTAG+TGG | + | chr5_2:54828482-54828501 | None:intergenic | 30.0% | |
| !! | GAATGGTGTGAAGTATTTTA+AGG | - | chr5_2:54828604-54828623 | Msa0776600:five_prime_UTR | 30.0% |
| ! | AATTTTATCATAGGGGGACT+AGG | + | chr5_2:54825148-54825167 | None:intergenic | 35.0% |
| TGGTATGAAGTGGTGTTTAT+TGG | + | chr5_2:54825173-54825192 | None:intergenic | 35.0% | |
| TTCCCATCTAAACATAACGA+TGG | - | chr5_2:54825286-54825305 | Msa0776600:CDS | 35.0% | |
| TCCCATCTAAACATAACGAT+GGG | - | chr5_2:54825287-54825306 | Msa0776600:CDS | 35.0% | |
| ACCCATCGTTATGTTTAGAT+GGG | + | chr5_2:54825291-54825310 | None:intergenic | 35.0% | |
| AACCCATCGTTATGTTTAGA+TGG | + | chr5_2:54825292-54825311 | None:intergenic | 35.0% | |
| ATTCGTCGATGAATTTGCAA+CGG | + | chr5_2:54825364-54825383 | None:intergenic | 35.0% | |
| CGGAAGAATCTTCAAATTGT+TGG | + | chr5_2:54825475-54825494 | None:intergenic | 35.0% | |
| ! | GATTCTTTTTCTGTATCCTC+TGG | + | chr5_2:54825602-54825621 | None:intergenic | 35.0% |
| ATCAGGAACTGAGGATAAAA+CGG | + | chr5_2:54825675-54825694 | None:intergenic | 35.0% | |
| ATCGTAAATAGGTTTGACGT+AGG | + | chr5_2:54825714-54825733 | None:intergenic | 35.0% | |
| ! | CAATTCTGCTTGGGAATTTT+TGG | - | chr5_2:54825811-54825830 | Msa0776600:CDS | 35.0% |
| CGTACTTTGAATTTCTCGTA+CGG | + | chr5_2:54825848-54825867 | None:intergenic | 35.0% | |
| TTCAAAGTACGTTACAGTCA+CGG | - | chr5_2:54825857-54825876 | Msa0776600:CDS | 35.0% | |
| !! | TTCTTTTTCATCCGTTACGT+TGG | + | chr5_2:54825903-54825922 | None:intergenic | 35.0% |
| !! | CGTAACGGATGAAAAAGAAA+AGG | - | chr5_2:54825904-54825923 | Msa0776600:CDS | 35.0% |
| AGTGTGACAGAAAATGAAGA+AGG | - | chr5_2:54825989-54826008 | Msa0776600:intron | 35.0% | |
| GTGTGACAGAAAATGAAGAA+GGG | - | chr5_2:54825990-54826009 | Msa0776600:intron | 35.0% | |
| TTGCTACATTCTTCTAACTC+CGG | + | chr5_2:54826070-54826089 | None:intergenic | 35.0% | |
| CATTTCCAAAATCACATTCC+CGG | + | chr5_2:54826167-54826186 | None:intergenic | 35.0% | |
| !! | ATTTTGGAAATGCTAGACGT+TGG | - | chr5_2:54826175-54826194 | Msa0776600:intron | 35.0% |
| ! | AATTGTACAACTTGCTTACC+TGG | + | chr5_2:54826235-54826254 | None:intergenic | 35.0% |
| TTCCACACATTTAACCATCA+GGG | + | chr5_2:54826366-54826385 | None:intergenic | 35.0% | |
| ATTCCACACATTTAACCATC+AGG | + | chr5_2:54826367-54826386 | None:intergenic | 35.0% | |
| TCAAGGAGTTTACAAAGACA+AGG | - | chr5_2:54826412-54826431 | Msa0776600:CDS | 35.0% | |
| CAAGGAGTTTACAAAGACAA+GGG | - | chr5_2:54826413-54826432 | Msa0776600:CDS | 35.0% | |
| AAGGAGTTTACAAAGACAAG+GGG | - | chr5_2:54826414-54826433 | Msa0776600:CDS | 35.0% | |
| AAACTGATATGCAGAAGAGT+AGG | - | chr5_2:54826609-54826628 | Msa0776600:intron | 35.0% | |
| AACTGATATGCAGAAGAGTA+GGG | - | chr5_2:54826610-54826629 | Msa0776600:intron | 35.0% | |
| TTCAGTCAAACGGTTTCATT+AGG | - | chr5_2:54826811-54826830 | Msa0776600:intron | 35.0% | |
| AACCTAGATATCTAGATGTG+AGG | + | chr5_2:54826896-54826915 | None:intergenic | 35.0% | |
| ! | TCAGAGTCTTTGTTCTTTTC+TGG | - | chr5_2:54827016-54827035 | Msa0776600:intron | 35.0% |
| TGGATATCTTGTCAACTACT+TGG | + | chr5_2:54827311-54827330 | None:intergenic | 35.0% | |
| CAAGTACCAACTAACTACAT+AGG | + | chr5_2:54827445-54827464 | None:intergenic | 35.0% | |
| ! | CTATGTAGTTAGTTGGTACT+TGG | - | chr5_2:54827443-54827462 | Msa0776600:CDS | 35.0% |
| AATCATATTCGAGACATGGT+CGG | + | chr5_2:54827628-54827647 | None:intergenic | 35.0% | |
| ACCTTTCATCAGTAAGTAGA+CGG | + | chr5_2:54827817-54827836 | None:intergenic | 35.0% | |
| CTTACTGATGAAAGGTTTCT+CGG | - | chr5_2:54827821-54827840 | Msa0776600:CDS | 35.0% | |
| GCATCAATATTAGCATTGCA+AGG | + | chr5_2:54827938-54827957 | None:intergenic | 35.0% | |
| TCAAATCCGAGTTACAGAAA+TGG | - | chr5_2:54827969-54827988 | Msa0776600:CDS | 35.0% | |
| GGAACTTAAGCTTCTTAGAT+TGG | - | chr5_2:54827990-54828009 | Msa0776600:CDS | 35.0% | |
| TCTTACTAGCCAATCATTCA+GGG | + | chr5_2:54828044-54828063 | None:intergenic | 35.0% | |
| ATCTTACTAGCCAATCATTC+AGG | + | chr5_2:54828045-54828064 | None:intergenic | 35.0% | |
| GCTTCAGAAGAATTCAACAT+TGG | - | chr5_2:54828246-54828265 | Msa0776600:CDS | 35.0% | |
| GAAGAATTCAACATTGGACA+AGG | - | chr5_2:54828252-54828271 | Msa0776600:CDS | 35.0% | |
| AAAGTTGGACAAAATGGTGA+AGG | - | chr5_2:54828315-54828334 | Msa0776600:CDS | 35.0% | |
| GTTCCAATTGCAAAAGAACT+GGG | - | chr5_2:54828355-54828374 | Msa0776600:CDS | 35.0% | |
| ! | GATTCTATTAGCTTACAGTC+TGG | - | chr5_2:54828418-54828437 | Msa0776600:CDS | 35.0% |
| ! | ATTTTCATTGGGAAGGGTTG+TGG | + | chr5_2:54825193-54825212 | None:intergenic | 40.0% |
| ! | GGAGGAATTTTCATTGGGAA+GGG | + | chr5_2:54825199-54825218 | None:intergenic | 40.0% |
| ! | AGGAGGAATTTTCATTGGGA+AGG | + | chr5_2:54825200-54825219 | None:intergenic | 40.0% |
| TGGAAGAAATGAAGGAGAGT+GGG | + | chr5_2:54825455-54825474 | None:intergenic | 40.0% | |
| TTGGAAGAAATGAAGGAGAG+TGG | + | chr5_2:54825456-54825475 | None:intergenic | 40.0% | |
| ! | CTAGAAGATGATTTTGAGCG+TGG | + | chr5_2:54825533-54825552 | None:intergenic | 40.0% |
| GTTCTGATTCAGAATGCAGA+GGG | + | chr5_2:54825580-54825599 | None:intergenic | 40.0% | |
| AGTCACATTATCAGGAACTG+AGG | + | chr5_2:54825684-54825703 | None:intergenic | 40.0% | |
| GGAGAGTAGGAATCGTAAAT+AGG | + | chr5_2:54825725-54825744 | None:intergenic | 40.0% | |
| AATTCCCAAGCAGAATTGCT+CGG | + | chr5_2:54825809-54825828 | None:intergenic | 40.0% | |
| TTACACTGACACCAACGTAA+CGG | - | chr5_2:54825889-54825908 | Msa0776600:CDS | 40.0% | |
| ! | GGTTCTGTTTGAAAGAGCAT+CGG | - | chr5_2:54826138-54826157 | Msa0776600:intron | 40.0% |
| !! | TTTGAAAGAGCATCGGATTC+CGG | - | chr5_2:54826145-54826164 | Msa0776600:intron | 40.0% |
| AACGCATGCATAATCTTGCA+CGG | + | chr5_2:54826329-54826348 | None:intergenic | 40.0% | |
| TCCACACATTTAACCATCAG+GGG | + | chr5_2:54826365-54826384 | None:intergenic | 40.0% | |
| AAATGTGTGGAATCACCATG+TGG | - | chr5_2:54826374-54826393 | Msa0776600:intron | 40.0% | |
| GAAGCTGTATCATGAAGTCA+AGG | - | chr5_2:54826490-54826509 | Msa0776600:CDS | 40.0% | |
| AGATGTGAGGCTCTCAATTT+AGG | + | chr5_2:54826883-54826902 | None:intergenic | 40.0% | |
| AGCCTCACATCTAGATATCT+AGG | - | chr5_2:54826891-54826910 | Msa0776600:intron | 40.0% | |
| AATTGACGGAAGAAGAGCTT+TGG | - | chr5_2:54827343-54827362 | Msa0776600:CDS | 40.0% | |
| ! | GTAGTTAGTTGGTACTTGGT+AGG | - | chr5_2:54827447-54827466 | Msa0776600:CDS | 40.0% |
| CCTTTCATCAGTAAGTAGAC+GGG | + | chr5_2:54827816-54827835 | None:intergenic | 40.0% | |
| ATGAAAGGTTTCTCGGAATG+TGG | - | chr5_2:54827828-54827847 | Msa0776600:CDS | 40.0% | |
| ATGTTACAAACGCCAGTATC+AGG | - | chr5_2:54827865-54827884 | Msa0776600:CDS | 40.0% | |
| ! | TGAGGAGACATCTAAAGCTT+TGG | + | chr5_2:54827903-54827922 | None:intergenic | 40.0% |
| AATCATTCAGGGCTTTCACA+TGG | + | chr5_2:54828033-54828052 | None:intergenic | 40.0% | |
| ATGTGAAAGCCCTGAATGAT+TGG | - | chr5_2:54828032-54828051 | Msa0776600:CDS | 40.0% | |
| TGTTTGTGCTCCTACACAAA+TGG | - | chr5_2:54828125-54828144 | Msa0776600:CDS | 40.0% | |
| ! | AGTGAAAATTTTGGACAGGC+AGG | - | chr5_2:54828288-54828307 | Msa0776600:CDS | 40.0% |
| GGAGCAAAAGTTGGACAAAA+TGG | - | chr5_2:54828309-54828328 | Msa0776600:CDS | 40.0% | |
| GGTTCCAATTGCAAAAGAAC+TGG | - | chr5_2:54828354-54828373 | Msa0776600:CDS | 40.0% | |
| ! | TCTCCCAGTTCTTTTGCAAT+TGG | + | chr5_2:54828361-54828380 | None:intergenic | 40.0% |
| CAAAAGAACTGGGAGAAGTA+GGG | - | chr5_2:54828365-54828384 | Msa0776600:CDS | 40.0% | |
| AAAAGAACTGGGAGAAGTAG+GGG | - | chr5_2:54828366-54828385 | Msa0776600:CDS | 40.0% | |
| GAAACAGATCTTTGTTGCCA+TGG | - | chr5_2:54828444-54828463 | Msa0776600:CDS | 40.0% | |
| CGATGAATTTGCAACGGTCA+CGG | + | chr5_2:54825358-54825377 | None:intergenic | 45.0% | |
| ATGGAATCCCTCAGAACACT+TGG | - | chr5_2:54825428-54825447 | Msa0776600:CDS | 45.0% | |
| GGAAGAAATGAAGGAGAGTG+GGG | + | chr5_2:54825454-54825473 | None:intergenic | 45.0% | |
| ! | TGAGAGTGAGGGTTTGGTTT+CGG | + | chr5_2:54825498-54825517 | None:intergenic | 45.0% |
| !!! | TGGTTTTGAGAGTGAGGGTT+TGG | + | chr5_2:54825504-54825523 | None:intergenic | 45.0% |
| !!! | GGTGATGGTTTTGAGAGTGA+GGG | + | chr5_2:54825509-54825528 | None:intergenic | 45.0% |
| !!! | AGGTGATGGTTTTGAGAGTG+AGG | + | chr5_2:54825510-54825529 | None:intergenic | 45.0% |
| ! | GAAGATGATTTTGAGCGTGG+AGG | + | chr5_2:54825530-54825549 | None:intergenic | 45.0% |
| ! | GGTTCTGATTCAGAATGCAG+AGG | + | chr5_2:54825581-54825600 | None:intergenic | 45.0% |
| GCATTCTGAATCAGAACCAG+AGG | - | chr5_2:54825583-54825602 | Msa0776600:CDS | 45.0% | |
| AAAGTACGTTACAGTCACGG+TGG | - | chr5_2:54825860-54825879 | Msa0776600:CDS | 45.0% | |
| AAGTACGTTACAGTCACGGT+GGG | - | chr5_2:54825861-54825880 | Msa0776600:CDS | 45.0% | |
| !! | TTGAAAGAGCATCGGATTCC+GGG | - | chr5_2:54826146-54826165 | Msa0776600:intron | 45.0% |
| ! | GGATTCCGGGAATGTGATTT+TGG | - | chr5_2:54826159-54826178 | Msa0776600:intron | 45.0% |
| TCCCCTGATGGTTAAATGTG+TGG | - | chr5_2:54826361-54826380 | Msa0776600:intron | 45.0% | |
| !! | ACAGCGTCGGTAGAACTATT+GGG | + | chr5_2:54826777-54826796 | None:intergenic | 45.0% |
| TGAAACCGTTTGACTGAAGC+TGG | + | chr5_2:54826809-54826828 | None:intergenic | 45.0% | |
| GCTCTCAATTTAGGTGCAAG+TGG | + | chr5_2:54826874-54826893 | None:intergenic | 45.0% | |
| ! | AGCTTTGGCCGCAGATTAAT+AGG | - | chr5_2:54827358-54827377 | Msa0776600:CDS | 45.0% |
| CCCGTCTACTTACTGATGAA+AGG | - | chr5_2:54827813-54827832 | Msa0776600:CDS | 45.0% | |
| GCAAGGCTTTCTGTTGAATG+AGG | + | chr5_2:54827921-54827940 | None:intergenic | 45.0% | |
| CAGAATGATTCGACTCCCTT+TGG | - | chr5_2:54828091-54828110 | Msa0776600:CDS | 45.0% | |
| ! | TTGTGTAGGAGCACAAACAC+AGG | + | chr5_2:54828124-54828143 | None:intergenic | 45.0% |
| GAAGGCTAGAGAGAGAAAGA+TGG | - | chr5_2:54828333-54828352 | Msa0776600:CDS | 45.0% | |
| GCAAAAGAACTGGGAGAAGT+AGG | - | chr5_2:54828364-54828383 | Msa0776600:CDS | 45.0% | |
| TATCATAGGGGGACTAGGAG+TGG | + | chr5_2:54825143-54825162 | None:intergenic | 50.0% | |
| GGAAGGGTTGTGGTATGAAG+TGG | + | chr5_2:54825183-54825202 | None:intergenic | 50.0% | |
| ! | GATTTTGAGCGTGGAGGTGA+TGG | + | chr5_2:54825524-54825543 | None:intergenic | 50.0% |
| !! | AGGATAAAACGGTGTCGTGG+TGG | + | chr5_2:54825664-54825683 | None:intergenic | 50.0% |
| ! | CTGAGGATAAAACGGTGTCG+TGG | + | chr5_2:54825667-54825686 | None:intergenic | 50.0% |
| AAGTTTCCGGTCGTGTTCGA+CGG | + | chr5_2:54825755-54825774 | None:intergenic | 50.0% | |
| TCCTCCGAGCAATTCTGCTT+GGG | - | chr5_2:54825802-54825821 | Msa0776600:CDS | 50.0% | |
| AGTACGTTACAGTCACGGTG+GGG | - | chr5_2:54825862-54825881 | Msa0776600:CDS | 50.0% | |
| ATCACCATGTGGACGCAAAG+CGG | - | chr5_2:54826385-54826404 | Msa0776600:intron | 50.0% | |
| !! | CACAGCGTCGGTAGAACTAT+TGG | + | chr5_2:54826778-54826797 | None:intergenic | 50.0% |
| ! | CAATAGTTCTACCGACGCTG+TGG | - | chr5_2:54826776-54826795 | Msa0776600:intron | 50.0% |
| GTACGCCAGCTTCAGTCAAA+CGG | - | chr5_2:54826801-54826820 | Msa0776600:intron | 50.0% | |
| AACACAGGTGGTGCACCAAA+GGG | + | chr5_2:54828109-54828128 | None:intergenic | 50.0% | |
| AAACACAGGTGGTGCACCAA+AGG | + | chr5_2:54828110-54828129 | None:intergenic | 50.0% | |
| ! | TGTAGGAGCACAAACACAGG+TGG | + | chr5_2:54828121-54828140 | None:intergenic | 50.0% |
| ! | AGTGGCACTGAACTTCTCCA+TGG | + | chr5_2:54828464-54828483 | None:intergenic | 50.0% |
| GCAACGCCTCAAGACTTGAC+CGG | - | chr5_2:54825312-54825331 | Msa0776600:CDS | 55.0% | |
| ! | CTCAAGACTTGACCGGCTTC+CGG | - | chr5_2:54825319-54825338 | Msa0776600:CDS | 55.0% |
| ACGGTCACGGCACAATGACA+CGG | + | chr5_2:54825345-54825364 | None:intergenic | 55.0% | |
| CATGTGTGCCACGTGTGCAT+CGG | + | chr5_2:54825411-54825430 | None:intergenic | 55.0% | |
| AGTGGGGCCAAGTGTTCTGA+GGG | + | chr5_2:54825438-54825457 | None:intergenic | 55.0% | |
| ! | GAGTGAGGGTTTGGTTTCGG+CGG | + | chr5_2:54825495-54825514 | None:intergenic | 55.0% |
| ! | CGGTGACGGCGGATTTAACT+CGG | + | chr5_2:54825780-54825799 | None:intergenic | 55.0% |
| CAAGCAGAATTGCTCGGAGG+AGG | + | chr5_2:54825803-54825822 | None:intergenic | 55.0% | |
| CTCCTCCGAGCAATTCTGCT+TGG | - | chr5_2:54825801-54825820 | Msa0776600:CDS | 55.0% | |
| TCCCAAGCAGAATTGCTCGG+AGG | + | chr5_2:54825806-54825825 | None:intergenic | 55.0% | |
| TCCTTCGTCGAATCCCCTGA+TGG | - | chr5_2:54826349-54826368 | Msa0776600:intron | 55.0% | |
| ACCATCAGGGGATTCGACGA+AGG | + | chr5_2:54826353-54826372 | None:intergenic | 55.0% | |
| CAATCCGCTTTGCGTCCACA+TGG | + | chr5_2:54826392-54826411 | None:intergenic | 55.0% | |
| !! | GGACGCAAAGCGGATTGTCA+AGG | - | chr5_2:54826395-54826414 | Msa0776600:intron | 55.0% |
| ! | TAGTTCTACCGACGCTGTGG+TGG | - | chr5_2:54826779-54826798 | Msa0776600:intron | 55.0% |
| GGACAGGCAGGAGCAAAAGT+TGG | - | chr5_2:54828300-54828319 | Msa0776600:CDS | 55.0% | |
| CGGAAGCCGGTCAAGTCTTG+AGG | + | chr5_2:54825321-54825340 | None:intergenic | 60.0% | |
| ACAATGACACGGCCGGAAGC+CGG | + | chr5_2:54825334-54825353 | None:intergenic | 60.0% | |
| TCACGGCACAATGACACGGC+CGG | + | chr5_2:54825341-54825360 | None:intergenic | 60.0% | |
| !! | CGGCGAGGGAGTAGCTTTGA+CGG | + | chr5_2:54825391-54825410 | None:intergenic | 60.0% |
| CGATGCACACGTGGCACACA+TGG | - | chr5_2:54825409-54825428 | Msa0776600:CDS | 60.0% | |
| GAGTGGGGCCAAGTGTTCTG+AGG | + | chr5_2:54825439-54825458 | None:intergenic | 60.0% | |
| TTTCCGGTCGTGTTCGACGG+AGG | + | chr5_2:54825752-54825771 | None:intergenic | 60.0% | |
| GCAGAATTGCTCGGAGGAGG+CGG | + | chr5_2:54825800-54825819 | None:intergenic | 60.0% | |
| CGTTACAGTCACGGTGGGGA+CGG | - | chr5_2:54825866-54825885 | Msa0776600:CDS | 60.0% | |
| ! | TGCCACGTGTGCATCGGCGA+GGG | + | chr5_2:54825405-54825424 | None:intergenic | 65.0% |
| TTGCTCGGAGGAGGCGGTGA+CGG | + | chr5_2:54825794-54825813 | None:intergenic | 65.0% | |
| CTGGCGTACCACCACAGCGT+CGG | + | chr5_2:54826790-54826809 | None:intergenic | 65.0% | |
| CTCCCTCGCCGATGCACACG+TGG | - | chr5_2:54825400-54825419 | Msa0776600:CDS | 70.0% | |
| ! | GTGCCACGTGTGCATCGGCG+AGG | + | chr5_2:54825406-54825425 | None:intergenic | 70.0% |
| CGACGGAGGCGGAGGAGAGT+AGG | + | chr5_2:54825738-54825757 | None:intergenic | 70.0% | |
| GTCGTGTTCGACGGAGGCGG+AGG | + | chr5_2:54825746-54825765 | None:intergenic | 70.0% | |
| CCGGTCGTGTTCGACGGAGG+CGG | + | chr5_2:54825749-54825768 | None:intergenic | 70.0% | |
| CCGCCTCCGTCGAACACGAC+CGG | - | chr5_2:54825746-54825765 | Msa0776600:CDS | 70.0% | |
| ! | CTCGGAGGAGGCGGTGACGG+CGG | + | chr5_2:54825791-54825810 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 54825138 | 54828653 | 54825138 | ID=Msa0776600;Name=Msa0776600 |
| chr5_2 | mRNA | 54825138 | 54828653 | 54825138 | ID=Msa0776600-mRNA-1;Parent=Msa0776600;Name=Msa0776600-mRNA-1;_AED=0.08;_eAED=0.08;_QI=167|1|1|1|1|1|4|92|689 |
| chr5_2 | exon | 54825138 | 54825956 | 54825138 | ID=Msa0776600-mRNA-1:exon:16295;Parent=Msa0776600-mRNA-1 |
| chr5_2 | exon | 54826400 | 54826623 | 54826400 | ID=Msa0776600-mRNA-1:exon:16294;Parent=Msa0776600-mRNA-1 |
| chr5_2 | exon | 54827280 | 54827467 | 54827280 | ID=Msa0776600-mRNA-1:exon:16293;Parent=Msa0776600-mRNA-1 |
| chr5_2 | exon | 54827556 | 54828653 | 54827556 | ID=Msa0776600-mRNA-1:exon:16292;Parent=Msa0776600-mRNA-1 |
| chr5_2 | five_prime_UTR | 54828487 | 54828653 | 54828487 | ID=Msa0776600-mRNA-1:five_prime_utr;Parent=Msa0776600-mRNA-1 |
| chr5_2 | CDS | 54827556 | 54828486 | 54827556 | ID=Msa0776600-mRNA-1:cds;Parent=Msa0776600-mRNA-1 |
| chr5_2 | CDS | 54827280 | 54827467 | 54827280 | ID=Msa0776600-mRNA-1:cds;Parent=Msa0776600-mRNA-1 |
| chr5_2 | CDS | 54826400 | 54826623 | 54826400 | ID=Msa0776600-mRNA-1:cds;Parent=Msa0776600-mRNA-1 |
| chr5_2 | CDS | 54825230 | 54825956 | 54825230 | ID=Msa0776600-mRNA-1:cds;Parent=Msa0776600-mRNA-1 |
| chr5_2 | three_prime_UTR | 54825138 | 54825229 | 54825138 | ID=Msa0776600-mRNA-1:three_prime_utr;Parent=Msa0776600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
