AlfalfaGEDB | Msa0187960

M. sativa cultivar zhongmu-4 / Msa0187960

KEGG: K02184
GO: GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010638 GO:0010639 GO:0016020 GO:0016043 GO:0030029 GO:0030036 GO:0030312 GO:0030832 GO:0030833 GO:0030834 GO:0030835 GO:0030837 GO:0030838 GO:0031333 GO:0031334 GO:0032271 GO:0032272 GO:0032273 GO:0032535 GO:0032956 GO:0032970 GO:0033043 GO:0043242 GO:0043244 GO:0043254 GO:0044087 GO:0044089 GO:0044464 GO:0044877 GO:0045010 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051015 GO:0051016 GO:0051128 GO:0051129 GO:0051130 GO:0051493 GO:0051494 GO:0051495 GO:0051693 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0097435 GO:0110053 GO:1901879 GO:1901880 GO:1902903 GO:1902904 GO:1902905
PFAM: PF02181.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0187960	XP_013444683.1	96.840	1076	23	4	1	1070	1	1071	0.0	2076

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0187960	sp\|Q9SE97\|FH1_ARATH	74.227	485	108	5	583	1059	551	1026	0.0	721

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0187960	A0A072TPC4	96.840	1076	23	4	1	1070	1	1071	0.0	2076

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0187960	Msa0879610	0.998290	5.963990e-261	-8.615850e-47
Msa0187960	Msa1317260	0.822844	1.906331e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0187960	MtrunA17_Chr8g0347491	96.840	1076	23	4	1	1070	1	1071	0.0	2076
Msa0187960	MtrunA17_Chr7g0249941	55.525	1095	335	29	20	1070	26	1012	0.0	892
Msa0187960	MtrunA17_Chr4g0045881	64.946	465	144	6	617	1066	428	888	0.0	587
Msa0187960	MtrunA17_Chr5g0401291	60.998	441	157	7	616	1048	455	888	1.48e-170	524
Msa0187960	MtrunA17_Chr4g0054001	58.985	473	174	8	609	1070	394	857	9.05e-170	520
Msa0187960	MtrunA17_Chr1g0192111	54.187	406	171	7	625	1024	497	893	3.77e-131	421
Msa0187960	MtrunA17_Chr4g0023611	46.791	483	216	10	616	1066	393	866	1.47e-119	389
Msa0187960	MtrunA17_Chr2g0319201	49.034	414	193	7	623	1024	393	800	8.64e-115	375
Msa0187960	MtrunA17_Chr2g0323071	46.265	415	200	8	623	1024	316	720	1.17e-105	349
Msa0187960	MtrunA17_Chr5g0414941	40.416	433	221	10	622	1025	411	835	3.10e-89	305

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0187960	AT3G25500.1	74.227	485	108	5	583	1059	551	1026	0.0	721
Msa0187960	AT2G43800.1	62.791	430	139	6	616	1035	438	856	3.33e-179	546
Msa0187960	AT5G67470.1	56.967	488	178	8	592	1067	420	887	3.87e-167	515
Msa0187960	AT3G05470.1	46.449	521	221	13	545	1024	365	868	4.76e-119	388
Msa0187960	AT5G54650.2	48.926	419	195	6	618	1024	435	846	6.84e-119	388
Msa0187960	AT5G54650.1	48.926	419	195	6	618	1024	435	846	6.84e-119	388
Msa0187960	AT5G48360.1	46.453	437	169	9	592	1026	409	782	1.82e-108	357
Msa0187960	AT3G07540.1	42.529	435	201	6	593	1024	446	834	3.94e-88	302
Msa0187960	AT1G70140.1	38.293	457	234	10	618	1041	298	739	2.97e-83	287
Msa0187960	AT1G59910.1	36.941	425	238	10	617	1024	454	865	1.72e-78	277

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Find 304 sgRNAs with CRISPR-Local

Find 416 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCCTTGTAAAAGATTT+GGG	0.302784	2_1:-2874215	Msa0187960:three_prime_UTR
AAACCCTTACTTAAAAGAGC+TGG	0.505939	2_1:+2876818	None:intergenic
AAACTAGGTGGTAACTCAAC+CGG	0.476660	2_1:+2876942	None:intergenic
AAAGAGACATTACAGTTCCT+CGG	0.592779	2_1:-2874550	Msa0187960:CDS
AAAGTTGAAGCCTTTGCATT+GGG	0.434876	2_1:-2876892	Msa0187960:CDS
AAATGGTTTGGGATCATTTG+AGG	0.449038	2_1:-2876842	Msa0187960:CDS
AACAACTCCTGTTGGTCAAC+CGG	0.373070	2_1:-2877042	Msa0187960:CDS
AACACAAAAGGCCTTGAAGG+AGG	0.613056	2_1:+2876993	None:intergenic
AACATGAGATGGTAAAATTT+GGG	0.393475	2_1:+2878929	None:intergenic
AACCAGCTTCTAGGAAGCAT+TGG	0.485263	2_1:-2877277	Msa0187960:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGATGGTAAAATTTGGGTAA+TGG	+	chr2_1:2873884-2873903	None:intergenic	30.0%
TTAGAGATGAAATGTTAGCT+GGG	+	chr2_1:2874349-2874368	None:intergenic	30.0%
TAAATCGAGAAACGTTTCTT+CGG	-	chr2_1:2874583-2874602	Msa0187960:CDS	30.0%
ACTCAATCTTGTAATGAAGA+TGG	-	chr2_1:2875256-2875275	Msa0187960:CDS	30.0%
ATGAATCTTCATAGCAATCA+TGG	-	chr2_1:2875376-2875395	Msa0187960:intron	30.0%
TGAATCTTCATAGCAATCAT+GGG	-	chr2_1:2875377-2875396	Msa0187960:intron	30.0%
CAATTTCTGATGTTTCAGAT+CGG	-	chr2_1:2875416-2875435	Msa0187960:intron	30.0%
TGTTTCTCAGAGAAAACAAT+GGG	-	chr2_1:2875621-2875640	Msa0187960:CDS	30.0%
GGTTTGGATTGAATTGAATT+GGG	-	chr2_1:2876203-2876222	Msa0187960:intron	30.0%
TTACTTGCAACAAAACATGA+GGG	+	chr2_1:2876451-2876470	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	2873871	2878967	2873871	ID=Msa0187960;Name=Msa0187960
chr2_1	mRNA	2873871	2878967	2873871	ID=Msa0187960-mRNA-1;Parent=Msa0187960;Name=Msa0187960-mRNA-1;_AED=0.02;_eAED=0.02;_QI=182\|1\|1\|1\|1\|1\|4\|656\|1070
chr2_1	exon	2873871	2875336	2873871	ID=Msa0187960-mRNA-1:exon:1288;Parent=Msa0187960-mRNA-1
chr2_1	exon	2875426	2875670	2875426	ID=Msa0187960-mRNA-1:exon:1287;Parent=Msa0187960-mRNA-1
chr2_1	exon	2876408	2876607	2876408	ID=Msa0187960-mRNA-1:exon:1286;Parent=Msa0187960-mRNA-1
chr2_1	exon	2876828	2878967	2876828	ID=Msa0187960-mRNA-1:exon:1285;Parent=Msa0187960-mRNA-1
chr2_1	five_prime_UTR	2878786	2878967	2878786	ID=Msa0187960-mRNA-1:five_prime_utr;Parent=Msa0187960-mRNA-1
chr2_1	CDS	2876828	2878785	2876828	ID=Msa0187960-mRNA-1:cds;Parent=Msa0187960-mRNA-1
chr2_1	CDS	2876408	2876607	2876408	ID=Msa0187960-mRNA-1:cds;Parent=Msa0187960-mRNA-1
chr2_1	CDS	2875426	2875670	2875426	ID=Msa0187960-mRNA-1:cds;Parent=Msa0187960-mRNA-1
chr2_1	CDS	2874527	2875336	2874527	ID=Msa0187960-mRNA-1:cds;Parent=Msa0187960-mRNA-1
chr2_1	three_prime_UTR	2873871	2874526	2873871	ID=Msa0187960-mRNA-1:three_prime_utr;Parent=Msa0187960-mRNA-1

Gene Sequence

>Msa0187960

ATGTGCTATTACTCTTTCTTCTTCTTCTTCTTATGCATTCTCATCTTCTTCAAACCAATCTCATCAAATGAACCGAGAAGATTCCTTCATCAACCTTTTCCACAAAACAACAATCTCTCACCTTCACAACCTCCTTCACCATCACCTCCTTCATCACCACCTCCATCACCAAATCCAAAATACCCATTTTCTACTACACCCCCCAACACTTCATCTTCTTCTTCTACACCTCCTTTTTTCCCTACATACCCCTCAACCCCACCACCACCTTCACCTTCTTCCTTTGCTTCATTCCCAGCTAACATTTCATCTCTAACTATCCCACAAACCCAAAAAACCAAATCATCTTCTTCCAAACTCCTCGCCGTCGCCATTACGGCCGTCATCGCCGCCGTCGCTGTCGTCGCAATCTCAGCTTTCGTTTACTGTCGCAGAAGTCGCAATAAAAGTTTCTTAGCTGATGATAAAACACTCAGATCCGACAGTAGTATTCGTCTCTTCCCTCGCGACGGTGGCGTCCCTACCGTCGCTAAATCGAGAAACGTTTCTTCGGAGTTTCTTTACCTTGGTACTATTGCTAACTCTCGTGGCGATGAACTACCTGATCCACGTGGCGCCGGTGGTGGTGGTCGGAATTCAAGAAAAATGGACTCGCCGGAGCTACAGCCGTTACCGCCGCTTATGCGACAAAGCTCGATGTACGATGAAGGTAATGGTGGTGCTACTGTTACTGCTGGTGAAGATGATGAAGAAGAGTTTTATTCTCCAAGAGGTTCTTTGAACGGAAATGGGTCGGGTTCTCGGAGAGTTTTCGCCGGAATTTCAGCTGAGAATTTGGTGGGTCGAAGTAGCAGTGAATCTACTTCGTCATCTTCTTCGTATTCATCTTCTTCTGCTTCACCGGGTCGTTCTCATTCGATCAGTCTCTCTCCACCGGTGAGTTTGAGTCCAAGAAGATCACAACCAAAGTCGCCGGAAAATGTTGTAACTCCGGCACCGACACAGCCACTACTTGTTAATGACGTTGGAAGAAGCTCGTTGTCGTCGTCACGAGCTTCTTCTAACCGTCACGTGCAGTCTTGTTCTTCAATGTCTTCATCTCCGGAGAAAATCTTCGCCGGAGAATGTAAGTCACCGTCTTTATCACCGTTGAATCTTTCACCGACGAAAAATTTAGATGGGTCTTTTGTAAAAGTTGAAAAGACTCAATCTTGTAATGAAGATGGTTCTTCTTCGCCGAGATTATCGAATGCTTCTAGTGGTAAATCATCGTCTTCTTCATCGTCGGCGTTTACTTTACCATCGCCGGAAAAGATGACGATGATGAATCTTCATAGCAATCATGGGTTGGATCAGTCTCCAACAATTTCTGATGTTTCAGATCGGTTTAGACATTCTCCTCTTTCATCATTGCCACTTTCACCAACGCTTCTTTCATCGCCGGAGAGAGATATAATGAGCACTCAACCACCACCACCGCCTCCGCAACCAGCTTCTAGGAAGCATTGGGAGATTCCTGACTTGTTAACACCAATTGCTGAATCACCAACTGTTTTGATTCAGAACGGTGTTTCTCAGAGAAAACAATGGGAAATTCCTGTTCTTTCAACACCAATTACACCTGCTAATAGAGTTTCAGCTCCTCCACCGCCGCCACCACCACCTCCACCTCCACTGGCAATGCCGATGAAGCAGCGGAAGCAATGGGAAGTACCTTCTCCAACAACTCCTGTTGGTCAACCGGTGGTTTGTAGGCCGCCGGAATTGAAACCTCCTTCAAGGCCTTTTGTGTTGCAAACTCCTTCAAATACATTGGTTTCTCCGGTTGAGTTACCACCTAGTTTTGAGGAGAATGAAGAGGTTTCTAAACCAAAGTTGAAGCCTTTGCATTGGGATAAAGTGAGGGCTAGTTCCGATCGTGAAATGGTTTGGGATCATTTGAGGTCCAGCTCTTTTAAGTTGAATGAGGAGATGATAGAAACATTATTTGTGGTGAATACACCAAATCCAAAACCAAAGGATGCTACTCCACGTTCAGTTCTTACACCTCCAAGTCACGAGGATAGGGTATTGGATCCGAAAAAGTCTCAAAATATTGCTATCTTGCTTCGAGCGGTTAATGTTACGGTAGAGGAAGTGTGTGAAGCACTGTTGGAAGGTGTTACTGATACACTTGGAACTGAACTACTTGAAAGCTTATTAAAAATGGCGCCAAGCAAGGAAGAAGAGCGCAAATTGAAGGAACATAAAGACGACTCTCCAAACAAACTCGGTTCTGCTGAGAAATTTTTGAAGGCAGTTCTCGATGTACCTTTTGCATTTAAAAGGGTGGAAGCTATGCTTTACATAGCCAATTTTGAATCTGAAGTGGAGTATATTCGTAAATCCTTTCAGACTCTAGAGGTTGCATGTGAAGAGCTGCGAAACAGTAGAATGTTCTTGAAGCTTCTAGAGGCCGTGCTCAAAACTGGGAACCGCATGAATGTTGGAACAAATCGAGGTGATGCGCATGCATTCAAGCTCGATACACTTCTCAAGCTGGTTGACGTTAAAGGTGCAGATGGTAAAACAACTCTTCTACACTTTGTTGTACAAGAAATCATTAGAACAGAAGGAGCTCGTCATTCAGATACTTCTACTAATCAAACACCGAGCGCAACATTGAGTGACGATGCCAAGTGCAGAAGACTTGGTCTTCAAGTAGTATCTAGTCTAAGTTCCGATCTAGCGAATGTGAAGAAGGCCGCGACAATGGACTCCGAAGTCCTCACGAGCGAAGTCTCTAAACTTTCAAAAGGAATCACACACATCGCCGAGATTGTAAAATTGAATCAAACTGCGGGATCAGATGAAACCGTTCGTAAATTCGCAGAATCAATGAACAAGTTTATGAGGATGGCTGAGGAGGAGATTTTAAGAATTCAAGCACAAGAAAGTGTTGCTTTATCACTTGTGAAAGAGATCACAGAGTATTTTCATGGTAACTTATCTAAAGAAGAAGCTCATCCATTTAGAATCTTCATGGTAGTAAGAGACTTCTTAACAGTTCTTGATAGGGTATGTAAAGAAGTTGGTAATATAAATGAAAGGACCATGATTAGTTCTGCTCATAGATTTCCTGTTCCAGTGAACCCTATGCTTCCACAACCACTTCCTGGATTACATGGAAAGAGACATTACAGTTCCTCGGATGATGATAGTTCATCTCCTTAG

Protein sequence

>Msa0187960

MCYYSFFFFFLCILIFFKPISSNEPRRFLHQPFPQNNNLSPSQPPSPSPPSSPPPSPNPKYPFSTTPPNTSSSSSTPPFFPTYPSTPPPPSPSSFASFPANISSLTIPQTQKTKSSSSKLLAVAITAVIAAVAVVAISAFVYCRRSRNKSFLADDKTLRSDSSIRLFPRDGGVPTVAKSRNVSSEFLYLGTIANSRGDELPDPRGAGGGGRNSRKMDSPELQPLPPLMRQSSMYDEGNGGATVTAGEDDEEEFYSPRGSLNGNGSGSRRVFAGISAENLVGRSSSESTSSSSSYSSSSASPGRSHSISLSPPVSLSPRRSQPKSPENVVTPAPTQPLLVNDVGRSSLSSSRASSNRHVQSCSSMSSSPEKIFAGECKSPSLSPLNLSPTKNLDGSFVKVEKTQSCNEDGSSSPRLSNASSGKSSSSSSSAFTLPSPEKMTMMNLHSNHGLDQSPTISDVSDRFRHSPLSSLPLSPTLLSSPERDIMSTQPPPPPPQPASRKHWEIPDLLTPIAESPTVLIQNGVSQRKQWEIPVLSTPITPANRVSAPPPPPPPPPPPLAMPMKQRKQWEVPSPTTPVGQPVVCRPPELKPPSRPFVLQTPSNTLVSPVELPPSFEENEEVSKPKLKPLHWDKVRASSDREMVWDHLRSSSFKLNEEMIETLFVVNTPNPKPKDATPRSVLTPPSHEDRVLDPKKSQNIAILLRAVNVTVEEVCEALLEGVTDTLGTELLESLLKMAPSKEEERKLKEHKDDSPNKLGSAEKFLKAVLDVPFAFKRVEAMLYIANFESEVEYIRKSFQTLEVACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRTEGARHSDTSTNQTPSATLSDDAKCRRLGLQVVSSLSSDLANVKKAATMDSEVLTSEVSKLSKGITHIAEIVKLNQTAGSDETVRKFAESMNKFMRMAEEEILRIQAQESVALSLVKEITEYFHGNLSKEEAHPFRIFMVVRDFLTVLDRVCKEVGNINERTMISSAHRFPVPVNPMLPQPLPGLHGKRHYSSSDDDSSSP*