AlfalfaGEDB | Msa1317260

M. sativa cultivar zhongmu-4 / Msa1317260

KEGG: K02184
GO: GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010638 GO:0010639 GO:0016020 GO:0016043 GO:0030029 GO:0030036 GO:0030312 GO:0030832 GO:0030833 GO:0030834 GO:0030835 GO:0030837 GO:0030838 GO:0031333 GO:0031334 GO:0032271 GO:0032272 GO:0032273 GO:0032535 GO:0032956 GO:0032970 GO:0033043 GO:0043242 GO:0043244 GO:0043254 GO:0044087 GO:0044089 GO:0044464 GO:0044877 GO:0045010 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051015 GO:0051016 GO:0051128 GO:0051129 GO:0051130 GO:0051493 GO:0051494 GO:0051495 GO:0051693 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0097435 GO:0110053 GO:1901879 GO:1901880 GO:1902903 GO:1902904 GO:1902905
PFAM: PF02181.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1317260	XP_013444683.1	96.654	1076	26	4	1	1071	1	1071	0.0	2063

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1317260	sp\|Q9SE97\|FH1_ARATH	74.380	484	109	5	584	1060	551	1026	0.0	722

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1317260	A0A072TPC4	96.654	1076	26	4	1	1071	1	1071	0.0	2063

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0187960	Msa1317260	0.822844	1.906331e-53	-8.615850e-47
Msa0198210	Msa1317260	0.850481	1.651434e-60	-8.615850e-47
Msa0278160	Msa1317260	0.826439	2.710874e-54	-8.615850e-47
Msa0353500	Msa1317260	0.816370	5.727442e-52	-8.615850e-47
Msa0371510	Msa1317260	0.811913	5.519621e-51	-8.615850e-47
Msa0419730	Msa1317260	0.803372	3.596942e-49	-8.615850e-47
Msa0450030	Msa1317260	0.802103	6.576191e-49	-8.615850e-47
Msa0494950	Msa1317260	0.815968	7.042806e-52	-8.615850e-47
Msa0879610	Msa1317260	0.821581	3.742769e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1317260	MtrunA17_Chr8g0347491	96.654	1076	26	4	1	1071	1	1071	0.0	2063
Msa1317260	MtrunA17_Chr7g0249941	55.225	1110	336	30	4	1071	22	1012	0.0	895
Msa1317260	MtrunA17_Chr4g0045881	64.871	464	144	6	619	1067	429	888	0.0	586
Msa1317260	MtrunA17_Chr5g0401291	61.224	441	156	7	617	1049	455	888	1.29e-171	527
Msa1317260	MtrunA17_Chr4g0054001	58.774	473	175	8	610	1071	394	857	7.08e-169	518
Msa1317260	MtrunA17_Chr1g0192111	54.187	406	171	7	626	1025	497	893	1.92e-131	421
Msa1317260	MtrunA17_Chr4g0023611	47.269	476	210	10	624	1067	400	866	2.15e-119	388
Msa1317260	MtrunA17_Chr2g0319201	48.456	421	199	7	617	1025	386	800	5.05e-115	376
Msa1317260	MtrunA17_Chr2g0323071	46.265	415	200	8	624	1025	316	720	6.36e-106	350
Msa1317260	MtrunA17_Chr5g0414941	40.416	433	221	10	623	1026	411	835	2.33e-89	306

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1317260	AT3G25500.1	74.380	484	109	5	584	1060	551	1026	0.0	722
Msa1317260	AT2G43800.1	62.791	430	139	6	617	1036	438	856	2.35e-179	547
Msa1317260	AT5G67470.1	57.084	487	179	8	593	1068	420	887	8.27e-168	517
Msa1317260	AT5G67470.1	28.527	319	168	12	19	309	22	308	2.08e-11	68.9
Msa1317260	AT3G05470.1	52.048	415	170	8	625	1025	469	868	6.53e-126	406
Msa1317260	AT5G54650.2	48.585	424	199	6	614	1025	430	846	4.17e-119	389
Msa1317260	AT5G54650.1	48.585	424	199	6	614	1025	430	846	4.17e-119	389
Msa1317260	AT5G48360.1	46.453	437	169	9	593	1027	409	782	2.10e-108	356
Msa1317260	AT3G07540.1	42.529	435	201	6	594	1025	446	834	2.36e-88	303
Msa1317260	AT1G70140.1	38.034	468	239	11	608	1042	290	739	1.59e-83	288

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Find 285 sgRNAs with CRISPR-Local

Find 385 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCCTTGTAAAAGATTT+GGG	0.302784	8_4:-18415671	Msa1317260:three_prime_UTR
AAACCCTTACTTAAAAGAGC+TGG	0.505939	8_4:+18418285	None:intergenic
AAACTAGGTGGCAACTCAAC+TGG	0.402014	8_4:+18418409	None:intergenic
AAAGAGACATTACAGTTCCT+CGG	0.592779	8_4:-18416006	Msa1317260:CDS
AAAGTTGAAGCCTTTGCATT+GGG	0.434876	8_4:-18418359	Msa1317260:CDS
AAATGGTTTGGGATCATTTG+AGG	0.449038	8_4:-18418309	Msa1317260:CDS
AACAACTCCTGTTGGTCAAC+CGG	0.373070	8_4:-18418509	Msa1317260:CDS
AACATGAGATGGTAAAATTT+GGG	0.393475	8_4:+18420411	None:intergenic
AACCATTTCACGATCGGAAC+TGG	0.417864	8_4:+18418324	None:intergenic
AACGTTTCTCGATTTAGCGA+TGG	0.592497	8_4:+18419713	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGATGGTAAAATTTGGGTAA+TGG	+	chr8_4:18415465-18415484	None:intergenic	30.0%
TTAGAGATGAAATGTTAGCT+GGG	+	chr8_4:18415939-18415958	None:intergenic	30.0%
ACTCAATCTTGTAATGAAGA+TGG	-	chr8_4:18416855-18416874	Msa1317260:intron	30.0%
ATGAATCTTCATAGCAATCA+TGG	-	chr8_4:18416975-18416994	Msa1317260:CDS	30.0%
TGAATCTTCATAGCAATCAT+GGG	-	chr8_4:18416976-18416995	Msa1317260:CDS	30.0%
CAATTTCAGATGTTTCAGAT+CGG	-	chr8_4:18417015-18417034	Msa1317260:CDS	30.0%
TGTTTCTCAGAGAAAACAAT+GGG	-	chr8_4:18417220-18417239	Msa1317260:intron	30.0%
GGTTTGGATTGAATTGAATT+GGG	-	chr8_4:18417810-18417829	Msa1317260:intron	30.0%
TTACTTGCAACAAAACATGA+GGG	+	chr8_4:18418058-18418077	None:intergenic	30.0%
ATTACTTGCAACAAAACATG+AGG	+	chr8_4:18418059-18418078	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	18415457	18420444	18415457	ID=Msa1317260;Name=Msa1317260
chr8_4	mRNA	18415457	18420444	18415457	ID=Msa1317260-mRNA-1;Parent=Msa1317260;Name=Msa1317260-mRNA-1;_AED=0.02;_eAED=0.02;_QI=189\|1\|1\|1\|1\|1\|4\|526\|1071
chr8_4	exon	18415457	18416792	18415457	ID=Msa1317260-mRNA-1:exon:6805;Parent=Msa1317260-mRNA-1
chr8_4	exon	18416882	18417126	18416882	ID=Msa1317260-mRNA-1:exon:6804;Parent=Msa1317260-mRNA-1
chr8_4	exon	18417864	18418063	18417864	ID=Msa1317260-mRNA-1:exon:6803;Parent=Msa1317260-mRNA-1
chr8_4	exon	18418295	18420444	18418295	ID=Msa1317260-mRNA-1:exon:6802;Parent=Msa1317260-mRNA-1
chr8_4	five_prime_UTR	18420256	18420444	18420256	ID=Msa1317260-mRNA-1:five_prime_utr;Parent=Msa1317260-mRNA-1
chr8_4	CDS	18418295	18420255	18418295	ID=Msa1317260-mRNA-1:cds;Parent=Msa1317260-mRNA-1
chr8_4	CDS	18417864	18418063	18417864	ID=Msa1317260-mRNA-1:cds;Parent=Msa1317260-mRNA-1
chr8_4	CDS	18416882	18417126	18416882	ID=Msa1317260-mRNA-1:cds;Parent=Msa1317260-mRNA-1
chr8_4	CDS	18415983	18416792	18415983	ID=Msa1317260-mRNA-1:cds;Parent=Msa1317260-mRNA-1
chr8_4	three_prime_UTR	18415457	18415982	18415457	ID=Msa1317260-mRNA-1:three_prime_utr;Parent=Msa1317260-mRNA-1

Gene Sequence

>Msa1317260

ATGTGCTATCACTCTTTCTTCTTCTTCTTATGCATTCTCATCTTCTTCAAACCAATCTCATCAAATGAACCAAGAAGATTCCTTCATCAACCTTTTCCACAAAACAACAATCTCTCACCTTCACAACCTCCTTCACCATCACCTCCTTCATCACCACCACCATCACCAAATCCAAAATACCCATTTTCTACTACACCTCCTAACACTTCATCTTCTTCTTCTACACCTCCCTTTTTCCCTACATACCCCTCAACCCCACCACCACCTTCACCTTCTTCCTTTGCTTCATTCCCAGCTAACATTTCATCTCTAACTATCCCACAAACCCAAAAAACCAAATCGTCTTCTTCCAAACTCCTCGCCGTCGCCATTACTGCCGTCATCGCCGCCGTCGCTGTCGTCGCAATCTCCGCTTTCATTTACTGTCGCAGAAGTCGCAGTAAAAGATTCTTAGCTGATGATAAAACACTCAGATCCGACAGTAGTATTCGTCTCTTCCCTCGCGACGGTGGCGTCCCCACCATCGCTAAATCGAGAAACGTTTCTTCTACTAGCTCAGAGTTTCTTTACCTTGGTACTATTGCTAACTCTAGAAGCGATGAACTACCTGATCCACGTGGAGCTGGTGGTGGTGGTCGGAATCCAAGAAAAATGGACTCGCCGGAGCTACAGCCGTTACCGCCGCTTATGCGACAAGGCTCGATGTTCGATGAAGGTAATGGTGGTGCTAATGTTACAGGTGGTGAAGATGATGAAGAAGAGTTTTATTCTCCAAGAGGTTCTTTAAACGGAAATGGGTCGGGTTCTCGGAGAGTTTTTGCCGGAATTTCAGCTGAGAATTTGGTGGGTCGAAGTAGCAGTGAATCTACTTCTTCATCTTCTTCGTATTCATCTTCTTCTGCTTCACCGGATCGTTCTCATTCGATTAGTCTCTCTCCGCCGGTGAGTTTAAGTCCAAGAAGATCACAACCAAAGTCGCCGGAAAATGTTGTAACTCCGGCACCGACACAGCCACTACTTGTTAGTGAAGTTGGAAGAAGCTCGTTGTCGTCGTCACGGGCTTCTTCTAACCGTCACGTGCAGTCTTGTTCTTCTATGTCTTCATCTCCAGAGAAAACCTTCGCCGGAGAATGCAAGTCACCGTCTTTATCACCGTTGAATCTTTCACCGACGAAAAATTTAGATGGGTCTTTTGTAAAAGTTGAAAAGACTCAATCTTGTAATGAAGATGGTTCTTCTTCGCCGAGATTATCGAATGCTTCTAGTGGTAAATCATCGTCTTCTTCATCGTCGGCGTTTACTTTGCCATCGCCGGATAAAATGACGATGATGAATCTTCATAGCAATCATGGGTTGGATCAGTCTCCAACAATTTCAGATGTTTCAGATCGGTTTAGACATTCTCCTCTTTCATCATTGCCACTTTCACCAACGCTTCTTTCATCGCCGGAGAGAGATATAATGAGCACTCAACCACCACCACCGCCGCCGCCACAACCTTCTAGGAAGCATTGGGAGATTCCTGACCTTTTAACACCAATTGCTGAATCACCAGCTATTTTGAATCAGACTGCTGTTTCTCAGAGAAAACAATGGGAAATTCCTGTTCTTTCAACACCAATTACACCTTCTAGTAGAGTTTCAGCTCCTCCACCACCACCGCCACCACCACCTCCACTTGCAATGCCAATGAAGCAGCGGAAGCAATGGGAAGTACCTTCTCCAACAACTCCTGTTGGTCAACCGGTGGTTTGTAGGCCGCCAGAATTGAAACCTCCTTCAAGGCCTTTTGTGATGCAAACTCCTCCAAATACATTGGTTTCTCCAGTTGAGTTGCCACCTAGTTTTGAGGCGAATGAAGAGGTTTCTAAACCAAAGTTGAAGCCTTTGCATTGGGATAAAGTGAGGGCCAGTTCCGATCGTGAAATGGTTTGGGATCATTTGAGGTCCAGCTCTTTTAAGTTGAATGAGGAGATGATAGAAACATTATTTGTGGTGAATACACCAAATCCAAAACCAAAGGATGCTACTCCACGTTCAGTTCTTACACCTCCAAGTCACGAGGATAGGGTATTGGATCCGAAAAAGTCTCAAAATATTGCTATCTTGCTTCGAGCGGTTAATGTTACGGTAGAGGAAGTGTGTGAAGCACTGTTGGAAGGTGTTACTGATACACTTGGAACTGAACTACTTGAAAGCTTATTAAAAATGGCGCCAAGCAAGGAAGAAGAGCGCAAATTGAAGGAACATAAAGACGACTCTCCAAACAAACTCGGTTCTGCTGAGAAATTTTTGAAGGCAGTTCTCGATGTACCTTTTGCATTTAAAAGGGTGGAAGCTATGCTTTACATAGCCAATTTTGAATCTGAAGTGGAGTATATTCGTAAATCCTTTCAGACTCTAGAGGTTGCATGTGAAGAGCTGCGAAACAGTAGAATGTTCTTGAAGCTTCTAGAGGCCGTGCTCAAAACTGGGAACCGCATGAATGTTGGAACAAACCGAGGTGATGCGCATGCATTCAAGCTCGATACACTTCTCAAGCTGGTTGACGTTAAAGGTGCAGATGGTAAAACAACTCTTCTACACTTTGTTGTACAAGAAATCATTAGAACAGAAGGAGCTCGTCATTCAGATACTTCTACTAATCAAACACCGAGCGCAACATTGAGTGACGATGCCAAGTGCAGAAGACTTGGTCTTCAAGTAGTATCTAGTCTAAGTTCTGATCTAGCGAATGTGAAGAAGGCCGCGACAATGGACTCCGAAGTCCTCACGAGCGAAGTCTCTAAACTTTCAAAAGGAATCACACACATCGCCGAGATTGTAAAATTGAATCAAACTGCGGGATCAGATGAAACCGTTCGTAAATTCGCAGAATCAATGAACAAGTTTATGAGGATGGCTGAGGAGGAGATTTTAAGAATTCAAGCACAAGAAAGTGTTGCTTTATCACTTGTGAAAGAGATCACAGAGTATTTTCATGGTAACTTATCTAAAGAAGAAGCTCATCCATTTAGAATCTTCATGGTAGTAAGAGACTTCTTAACAGTTCTTGATAGGGTATGCAAAGAAGTTGGTAATATAAATGAAAGGACCATGATTAGTTCTGCTCATAGATTTCCTGTTCCAGTGAACCCTATGCTTCCACAACCACTTCCTGGATTACATGGAAAGAGACATTACAGTTCCTCGGATGATGATAGTTCATCTCCTTAG

Protein sequence

>Msa1317260

MCYHSFFFFLCILIFFKPISSNEPRRFLHQPFPQNNNLSPSQPPSPSPPSSPPPSPNPKYPFSTTPPNTSSSSSTPPFFPTYPSTPPPPSPSSFASFPANISSLTIPQTQKTKSSSSKLLAVAITAVIAAVAVVAISAFIYCRRSRSKRFLADDKTLRSDSSIRLFPRDGGVPTIAKSRNVSSTSSEFLYLGTIANSRSDELPDPRGAGGGGRNPRKMDSPELQPLPPLMRQGSMFDEGNGGANVTGGEDDEEEFYSPRGSLNGNGSGSRRVFAGISAENLVGRSSSESTSSSSSYSSSSASPDRSHSISLSPPVSLSPRRSQPKSPENVVTPAPTQPLLVSEVGRSSLSSSRASSNRHVQSCSSMSSSPEKTFAGECKSPSLSPLNLSPTKNLDGSFVKVEKTQSCNEDGSSSPRLSNASSGKSSSSSSSAFTLPSPDKMTMMNLHSNHGLDQSPTISDVSDRFRHSPLSSLPLSPTLLSSPERDIMSTQPPPPPPPQPSRKHWEIPDLLTPIAESPAILNQTAVSQRKQWEIPVLSTPITPSSRVSAPPPPPPPPPPLAMPMKQRKQWEVPSPTTPVGQPVVCRPPELKPPSRPFVMQTPPNTLVSPVELPPSFEANEEVSKPKLKPLHWDKVRASSDREMVWDHLRSSSFKLNEEMIETLFVVNTPNPKPKDATPRSVLTPPSHEDRVLDPKKSQNIAILLRAVNVTVEEVCEALLEGVTDTLGTELLESLLKMAPSKEEERKLKEHKDDSPNKLGSAEKFLKAVLDVPFAFKRVEAMLYIANFESEVEYIRKSFQTLEVACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRTEGARHSDTSTNQTPSATLSDDAKCRRLGLQVVSSLSSDLANVKKAATMDSEVLTSEVSKLSKGITHIAEIVKLNQTAGSDETVRKFAESMNKFMRMAEEEILRIQAQESVALSLVKEITEYFHGNLSKEEAHPFRIFMVVRDFLTVLDRVCKEVGNINERTMISSAHRFPVPVNPMLPQPLPGLHGKRHYSSSDDDSSSP*