AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1317260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1317260 MtrunA17_Chr8g0347491 96.654 1076 26 4 1 1071 1 1071 0.0 2063
Msa1317260 MtrunA17_Chr7g0249941 55.225 1110 336 30 4 1071 22 1012 0.0 895
Msa1317260 MtrunA17_Chr4g0045881 64.871 464 144 6 619 1067 429 888 0.0 586
Msa1317260 MtrunA17_Chr5g0401291 61.224 441 156 7 617 1049 455 888 1.29e-171 527
Msa1317260 MtrunA17_Chr4g0054001 58.774 473 175 8 610 1071 394 857 7.08e-169 518
Msa1317260 MtrunA17_Chr1g0192111 54.187 406 171 7 626 1025 497 893 1.92e-131 421
Msa1317260 MtrunA17_Chr4g0023611 47.269 476 210 10 624 1067 400 866 2.15e-119 388
Msa1317260 MtrunA17_Chr2g0319201 48.456 421 199 7 617 1025 386 800 5.05e-115 376
Msa1317260 MtrunA17_Chr2g0323071 46.265 415 200 8 624 1025 316 720 6.36e-106 350
Msa1317260 MtrunA17_Chr5g0414941 40.416 433 221 10 623 1026 411 835 2.33e-89 306
Msa1317260 MtrunA17_Chr8g0364331 40.654 428 217 12 626 1026 309 726 3.68e-87 297
Msa1317260 MtrunA17_Chr3g0118231 37.897 409 236 8 623 1025 245 641 6.97e-76 264
Msa1317260 MtrunA17_Chr4g0074091 27.968 379 225 10 626 993 792 1133 4.50e-33 139
Msa1317260 MtrunA17_Chr4g0061111 26.178 382 234 10 627 996 1171 1516 1.48e-31 134
Msa1317260 MtrunA17_Chr1g0150261 24.658 365 230 7 618 972 1356 1685 6.42e-30 129
Msa1317260 MtrunA17_Chr3g0091511 24.719 356 224 8 627 972 1584 1905 4.73e-28 123
Msa1317260 MtrunA17_Chr5g0409151 23.502 217 132 3 758 972 2 186 7.63e-16 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1317260 AT3G25500.1 74.380 484 109 5 584 1060 551 1026 0.0 722
Msa1317260 AT2G43800.1 62.791 430 139 6 617 1036 438 856 2.35e-179 547
Msa1317260 AT5G67470.1 57.084 487 179 8 593 1068 420 887 8.27e-168 517
Msa1317260 AT5G67470.1 28.527 319 168 12 19 309 22 308 2.08e-11 68.9
Msa1317260 AT3G05470.1 52.048 415 170 8 625 1025 469 868 6.53e-126 406
Msa1317260 AT5G54650.2 48.585 424 199 6 614 1025 430 846 4.17e-119 389
Msa1317260 AT5G54650.1 48.585 424 199 6 614 1025 430 846 4.17e-119 389
Msa1317260 AT5G48360.1 46.453 437 169 9 593 1027 409 782 2.10e-108 356
Msa1317260 AT3G07540.1 42.529 435 201 6 594 1025 446 834 2.36e-88 303
Msa1317260 AT1G70140.1 38.034 468 239 11 608 1042 290 739 1.59e-83 288
Msa1317260 AT1G59910.1 37.116 423 236 10 620 1025 456 865 1.74e-78 277
Msa1317260 AT3G25493.1 71.795 117 33 0 943 1059 31 147 1.97e-54 187
Msa1317260 AT1G24150.2 42.466 219 105 6 626 834 312 519 6.52e-43 165
Msa1317260 AT5G07740.3 26.893 383 227 9 624 993 1222 1564 3.98e-33 140
Msa1317260 AT5G07740.1 26.893 383 227 9 624 993 1244 1586 4.08e-33 139
Msa1317260 AT5G07740.2 25.180 417 225 10 624 993 1244 1620 6.77e-29 126
Msa1317260 AT1G31810.2 24.607 382 237 9 624 993 816 1158 2.68e-28 124
Msa1317260 AT1G31810.1 24.607 382 237 9 624 993 816 1158 2.68e-28 124
Msa1317260 AT5G58160.1 23.227 409 268 9 626 1026 838 1208 3.57e-27 120
Msa1317260 AT5G07770.3 24.403 377 229 9 627 993 199 529 7.17e-26 115
Msa1317260 AT5G07770.1 24.403 377 229 9 627 993 192 522 9.52e-26 114
Msa1317260 AT5G07770.4 24.403 377 229 9 627 993 58 388 4.32e-25 112
Msa1317260 AT5G07770.2 23.611 360 220 8 644 993 181 495 2.61e-22 103
Msa1317260 AT3G32400.2 23.636 385 245 10 599 972 70 416 2.81e-22 102
Msa1317260 AT5G07760.2 23.355 304 200 5 691 993 523 794 1.91e-20 98.2
Msa1317260 AT5G07760.1 23.355 304 200 5 691 993 523 794 1.93e-20 98.2
Msa1317260 AT2G25050.1 21.286 451 276 13 615 1025 733 1144 4.38e-20 97.4
Msa1317260 AT5G07650.2 23.843 281 183 4 692 972 470 719 3.32e-18 90.9
Msa1317260 AT5G07780.1 23.404 376 218 13 623 977 74 400 2.47e-16 83.6
Msa1317260 AT5G07650.1 22.623 305 181 5 692 972 470 743 4.42e-15 80.9
Msa1317260 AT3G32400.1 24.074 324 203 9 557 852 18 326 5.27e-11 67.0

Find 285 sgRNAs with CRISPR-Local

Find 385 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAACATGAGATGGTAAAATT+TGG 0.159908 8_4:+18420410 None:intergenic
CGGAATTTCAGCTGAGAATT+TGG 0.166808 8_4:-18419412 Msa1317260:CDS
CAGACACCTAACTGCATATT+TGG 0.185975 8_4:+18415835 None:intergenic
TTAGGAGGTGTAGTAGAAAA+TGG 0.213413 8_4:+18420053 None:intergenic
TGAGGGGTATGTAGGGAAAA+AGG 0.214194 8_4:+18420004 None:intergenic
CTCAAGCTGGTTGACGTTAA+AGG 0.220743 8_4:-18416641 Msa1317260:CDS
CATTGCTTCCGCTGCTTCAT+TGG 0.221477 8_4:+18418547 None:intergenic
TGAAGGTGGTGGTGGGGTTG+AGG 0.222154 8_4:+18419986 None:intergenic
CTTGAAGGAGGTTTCAATTC+TGG 0.226751 8_4:+18418472 None:intergenic
TTGATGCTTCAACAAAATTA+AGG 0.236522 8_4:-18415891 Msa1317260:three_prime_UTR
CTTGGTTCATTTGATGAGAT+TGG 0.241923 8_4:+18420182 None:intergenic
ATTCAGCAATTGGTGTTAAA+AGG 0.246184 8_4:+18418707 None:intergenic
CTCCACTTCAGATTCAAAAT+TGG 0.253331 8_4:+18416912 None:intergenic
ACTGGAGAAACCAATGTATT+TGG 0.257163 8_4:+18418427 None:intergenic
GGTGGTGGTGGCGGTGGTGG+TGG 0.265460 8_4:+18418583 None:intergenic
GTTGCTAATAAGCTATTAAT+AGG 0.266312 8_4:-18415514 Msa1317260:three_prime_UTR
GTAGTAGAAAATGGGTATTT+TGG 0.269771 8_4:+18420062 None:intergenic
TCAATGGGTTACTGTGATTT+AGG 0.274124 8_4:-18415927 Msa1317260:three_prime_UTR
CATCAAAATCACCTGGTTAA+AGG 0.274808 8_4:+18415756 None:intergenic
CGCCGCCGCCACAACCTTCT+AGG 0.274993 8_4:-18418750 Msa1317260:CDS
GACTTTGGTTGTGATCTTCT+TGG 0.293641 8_4:+18419279 None:intergenic
GGAGGTGGTGGTGGCGGTGG+TGG 0.293859 8_4:+18418580 None:intergenic
ACTTCTTAACAGTTCTTGAT+AGG 0.298082 8_4:-18416139 Msa1317260:CDS
GGTTGATGAAGGAATCTTCT+TGG 0.301229 8_4:+18420164 None:intergenic
AAAATCCTTGTAAAAGATTT+GGG 0.302784 8_4:-18415671 Msa1317260:three_prime_UTR
ACTCTACTAGAAGGTGTAAT+TGG 0.308943 8_4:+18418616 None:intergenic
CTAGAGGCCGTGCTCAAAAC+TGG 0.311014 8_4:-18416725 Msa1317260:CDS
ATGCTTCCACAACCACTTCC+TGG 0.318071 8_4:-18416038 Msa1317260:CDS
TGATACATAACCTTCATAAA+AGG 0.321299 8_4:+18415587 None:intergenic
TTGCGCTCTTCTTCCTTGCT+TGG 0.329564 8_4:+18417051 None:intergenic
AAGCAATTCAAATGGCAAAT+TGG 0.330738 8_4:-18415549 Msa1317260:three_prime_UTR
CAATGCAAAGGCTTCAACTT+TGG 0.331536 8_4:+18418361 None:intergenic
ACTACCATGAAGATTCTAAA+TGG 0.334807 8_4:+18416167 None:intergenic
GAAGGTGGTGGTGGGGTTGA+GGG 0.335139 8_4:+18419987 None:intergenic
GGAGTAGCATCCTTTGGTTT+TGG 0.338452 8_4:+18417992 None:intergenic
CAAATTCTCAGCTGAAATTC+CGG 0.341854 8_4:+18419413 None:intergenic
ACGGAAATGGGTCGGGTTCT+CGG 0.342408 8_4:-18419446 Msa1317260:CDS
AGAGGTTCTTTAAACGGAAA+TGG 0.343572 8_4:-18419459 Msa1317260:CDS
GGCAAATTGGAGACAACATT+TGG 0.343834 8_4:-18415536 Msa1317260:three_prime_UTR
GGTTGTGGCGGCGGCGGTGG+TGG 0.345941 8_4:+18418757 None:intergenic
GGTGGTGGCGGTGGTGGTGG+AGG 0.346800 8_4:+18418586 None:intergenic
TTGGTCAACCGGTGGTTTGT+AGG 0.347205 8_4:-18418498 Msa1317260:CDS
TCAGCAGAACCGAGTTTGTT+TGG 0.349669 8_4:+18417003 None:intergenic
AATGGCGACGGCGAGGAGTT+TGG 0.355283 8_4:+18419884 None:intergenic
AAGGTGGTGGTGGGGTTGAG+GGG 0.359462 8_4:+18419988 None:intergenic
TCATCCATTTAGAATCTTCA+TGG 0.368202 8_4:-18416171 Msa1317260:CDS
AACAACTCCTGTTGGTCAAC+CGG 0.373070 8_4:-18418509 Msa1317260:CDS
TTCCGATCGTGAAATGGTTT+GGG 0.375123 8_4:-18418320 Msa1317260:CDS
TCATCTCCTTAGCGCATGTT+TGG 0.375341 8_4:-18415972 Msa1317260:exon
AGCATAGGGTTCACTGGAAC+AGG 0.375806 8_4:+18416056 None:intergenic
GGGAGAGAAAGGAGAAAGAA+AGG 0.377610 8_4:+18420347 None:intergenic
GAAGGTTGTGGCGGCGGCGG+TGG 0.382036 8_4:+18418754 None:intergenic
TCTCCAAGAGGTTCTTTAAA+CGG 0.382395 8_4:-18419465 Msa1317260:CDS
GTTCCGATCGTGAAATGGTT+TGG 0.383673 8_4:-18418321 Msa1317260:CDS
GAAGAAGAAGATGAAGTGTT+AGG 0.391467 8_4:+18420035 None:intergenic
GAGTTTGGAAGAAGACGATT+TGG 0.391718 8_4:+18419899 None:intergenic
GGAAGAGAGAAGGGAGAGAA+AGG 0.393087 8_4:+18420336 None:intergenic
AACATGAGATGGTAAAATTT+GGG 0.393475 8_4:+18420411 None:intergenic
TCTGAAACATCTGAAATTGT+TGG 0.395810 8_4:+18418868 None:intergenic
GGTGGGGTTGAGGGGTATGT+AGG 0.396440 8_4:+18419996 None:intergenic
GAAGAAGGTGAAGGTGGTGG+TGG 0.397218 8_4:+18419978 None:intergenic
AAACTAGGTGGCAACTCAAC+TGG 0.402014 8_4:+18418409 None:intergenic
GGGTCATGGAGGGTGCATTA+TGG 0.412702 8_4:-18415733 Msa1317260:three_prime_UTR
TGTGGCGGCGGCGGTGGTGG+TGG 0.414568 8_4:+18418760 None:intergenic
AACCATTTCACGATCGGAAC+TGG 0.417864 8_4:+18418324 None:intergenic
CCACTACTTGTTAGTGAAGT+TGG 0.417990 8_4:-18419222 Msa1317260:CDS
ATCTCCCAATGCTTCCTAGA+AGG 0.420079 8_4:+18418736 None:intergenic
CAACCACTTCCTGGATTACA+TGG 0.421232 8_4:-18416029 Msa1317260:CDS
AGTGGAGGTGGTGGTGGCGG+TGG 0.424120 8_4:+18418577 None:intergenic
GTTAGAGATGAAATGTTAGC+TGG 0.426511 8_4:+18419942 None:intergenic
AGGAGAAAGAAAGGAGAAGT+GGG 0.427394 8_4:+18420356 None:intergenic
TTCATCTTCTTCTGCTTCAC+CGG 0.429921 8_4:-18419346 Msa1317260:CDS
GAGTGATGAAGGAAGAGAGA+AGG 0.432193 8_4:+18420326 None:intergenic
GAGAGAGTAGAGAGTGATGA+AGG 0.433001 8_4:+18420315 None:intergenic
CAGAATTGAAACCTCCTTCA+AGG 0.433069 8_4:-18418471 Msa1317260:CDS
AATGGTGGTGCTAATGTTAC+AGG 0.433893 8_4:-18419516 Msa1317260:CDS
GAACGTGGAGTAGCATCCTT+TGG 0.434256 8_4:+18417986 None:intergenic
AAAGTTGAAGCCTTTGCATT+GGG 0.434876 8_4:-18418359 Msa1317260:CDS
GCAATTGGTGTTAAAAGGTC+AGG 0.436538 8_4:+18418712 None:intergenic
GGCGGTAACGGCTGTAGCTC+CGG 0.439758 8_4:+18419573 None:intergenic
ATTGCAAGTGGAGGTGGTGG+TGG 0.441311 8_4:+18418571 None:intergenic
GGAAGAAGAGCGCAAATTGA+AGG 0.444590 8_4:-18417043 Msa1317260:CDS
TGCATCACAAAAGGCCTTGA+AGG 0.446283 8_4:+18418457 None:intergenic
GAGGTTCTTTAAACGGAAAT+GGG 0.448607 8_4:-18419458 Msa1317260:CDS
AAATGGTTTGGGATCATTTG+AGG 0.449038 8_4:-18418309 Msa1317260:CDS
GGCCAGTTCCGATCGTGAAA+TGG 0.449603 8_4:-18418326 Msa1317260:CDS
TCTTTAAACGGAAATGGGTC+GGG 0.449904 8_4:-18419453 Msa1317260:CDS
GTAATTGGTGTTGAAAGAAC+AGG 0.452574 8_4:+18418631 None:intergenic
TTTGGATTTGGTGATGGTGG+TGG 0.452798 8_4:+18420080 None:intergenic
GGCGTTTACTTTGCCATCGC+CGG 0.452852 8_4:-18418941 Msa1317260:CDS
AGTGATGAAGGAAGAGAGAA+GGG 0.453293 8_4:+18420327 None:intergenic
ATGAATCTTCATAGCAATCA+TGG 0.453942 8_4:-18418904 Msa1317260:CDS
TAGGAGGTGTAGTAGAAAAT+GGG 0.456500 8_4:+18420054 None:intergenic
ATAGCTGGTGATTCAGCAAT+TGG 0.459009 8_4:+18418697 None:intergenic
GGTGATGGTGGTGGTGATGA+AGG 0.459012 8_4:+18420089 None:intergenic
GCAAGTGGAGGTGGTGGTGG+CGG 0.459082 8_4:+18418574 None:intergenic
AATCAATGAACAAGTTTATG+AGG 0.460163 8_4:-18416301 Msa1317260:CDS
CTAGAAGGTTGTGGCGGCGG+CGG 0.462318 8_4:+18418751 None:intergenic
CAAAGTTGAAGCCTTTGCAT+TGG 0.465268 8_4:-18418360 Msa1317260:CDS
AAGACCAAGTCTTCTGCACT+TGG 0.465976 8_4:+18416499 None:intergenic
TCTTCATTCGCCTCAAAACT+AGG 0.467164 8_4:+18418394 None:intergenic
GGAGGAGTTTGCATCACAAA+AGG 0.468304 8_4:+18418448 None:intergenic
AGTGAGTTAGATAGAATCAA+TGG 0.468327 8_4:-18415943 Msa1317260:three_prime_UTR
ATGGAGGGTGCATTATGGTC+TGG 0.468346 8_4:-18415728 Msa1317260:three_prime_UTR
TTTCCGTTTAAAGAACCTCT+TGG 0.468902 8_4:+18419462 None:intergenic
GAAGTCTCTAAACTTTCAAA+AGG 0.468986 8_4:-18416398 Msa1317260:CDS
CAAACCACCGGTTGACCAAC+AGG 0.469210 8_4:+18418502 None:intergenic
CACAACCTTCTAGGAAGCAT+TGG 0.473503 8_4:-18418741 Msa1317260:CDS
TGTGTACAAAGCAATTCAAA+TGG 0.476638 8_4:-18415557 Msa1317260:three_prime_UTR
AAGAAGGTGAAGGTGGTGGT+GGG 0.477077 8_4:+18419979 None:intergenic
TTCTTTAAACGGAAATGGGT+CGG 0.480385 8_4:-18419454 Msa1317260:CDS
AGCTCAGAGTTTCTTTACCT+TGG 0.481937 8_4:-18419681 Msa1317260:CDS
GATGATAGAAACATTATTTG+TGG 0.481950 8_4:-18418029 Msa1317260:CDS
TTCCTAGAAGGTTGTGGCGG+CGG 0.483570 8_4:+18418748 None:intergenic
CCACCAGCTCCACGTGGATC+AGG 0.484408 8_4:+18419627 None:intergenic
GCTTCGAGCGGTTAATGTTA+CGG 0.484806 8_4:-18417894 Msa1317260:CDS
AAGGAGAAAGAAAGGAGAAG+TGG 0.484833 8_4:+18420355 None:intergenic
GGAGCTGAAACTCTACTAGA+AGG 0.484946 8_4:+18418607 None:intergenic
GCGATTCCAAATATGCAGTT+AGG 0.485381 8_4:-18415841 Msa1317260:three_prime_UTR
TGTCGCATAAGCGGCGGTAA+CGG 0.487975 8_4:+18419561 None:intergenic
GTGGGGTTGAGGGGTATGTA+GGG 0.489242 8_4:+18419997 None:intergenic
ATTGGCATTGCAAGTGGAGG+TGG 0.492688 8_4:+18418565 None:intergenic
CAATGCTTCCTAGAAGGTTG+TGG 0.493155 8_4:+18418742 None:intergenic
CCACGTGGAGCTGGTGGTGG+TGG 0.493624 8_4:-18419621 Msa1317260:CDS
GGCATTGCAAGTGGAGGTGG+TGG 0.494997 8_4:+18418568 None:intergenic
AAGCTCGTTGTCGTCGTCAC+GGG 0.496123 8_4:-18419196 Msa1317260:CDS
TGTAATCCAGGAAGTGGTTG+TGG 0.499250 8_4:+18416032 None:intergenic
CTTCTTAACAGTTCTTGATA+GGG 0.499816 8_4:-18416138 Msa1317260:CDS
ACTCAATCTTGTAATGAAGA+TGG 0.500417 8_4:-18419024 Msa1317260:CDS
CTACCTGATCCACGTGGAGC+TGG 0.501892 8_4:-18419630 Msa1317260:CDS
ACCCTATCCTCGTGACTTGG+AGG 0.502964 8_4:+18417953 None:intergenic
GGTTGACCAACAGGAGTTGT+TGG 0.504807 8_4:+18418511 None:intergenic
AAACCCTTACTTAAAAGAGC+TGG 0.505939 8_4:+18418285 None:intergenic
GACAGCGACGGCGGCGATGA+CGG 0.508417 8_4:+18419857 None:intergenic
GCAGTCTGATTCAAAATAGC+TGG 0.508744 8_4:+18418682 None:intergenic
GTAAAATTGAATCAAACTGC+GGG 0.510252 8_4:-18416353 Msa1317260:CDS
ACTGGGAACCGCATGAATGT+TGG 0.511036 8_4:-18416707 Msa1317260:CDS
GTGGAGCTGGTGGTGGTGGT+CGG 0.512097 8_4:-18419617 Msa1317260:CDS
TTTCCATGTAATCCAGGAAG+TGG 0.512207 8_4:+18416026 None:intergenic
AATACCCTATCCTCGTGACT+TGG 0.513434 8_4:+18417950 None:intergenic
AAGTCACGAGGATAGGGTAT+TGG 0.515638 8_4:-18417948 Msa1317260:CDS
GAAGCTCGTTGTCGTCGTCA+CGG 0.516519 8_4:-18419197 Msa1317260:CDS
TGACTTGCATTCTCCGGCGA+AGG 0.517014 8_4:+18419116 None:intergenic
GGCGGCGATGACGGCAGTAA+TGG 0.519032 8_4:+18419866 None:intergenic
CAATGAAGCAGCGGAAGCAA+TGG 0.521188 8_4:-18418546 Msa1317260:CDS
TGTCTCTTTCCATGTAATCC+AGG 0.522444 8_4:+18416020 None:intergenic
ACAACCTTCTAGGAAGCATT+GGG 0.525041 8_4:-18418740 Msa1317260:CDS
GGAAGTGGTTGTGGAAGCAT+AGG 0.525174 8_4:+18416041 None:intergenic
AGTAGTGGCTGTGTCGGTGC+CGG 0.525966 8_4:+18419237 None:intergenic
CAAGAAATCATTAGAACAGA+AGG 0.526066 8_4:-18416581 Msa1317260:CDS
GATGCCAAGTGCAGAAGACT+TGG 0.528209 8_4:-18416503 Msa1317260:CDS
TGTGGAAGCATAGGGTTCAC+TGG 0.528253 8_4:+18416050 None:intergenic
GAAAGAAGCGTTGGTGAAAG+TGG 0.528287 8_4:+18418814 None:intergenic
AGCGGTTAATGTTACGGTAG+AGG 0.530275 8_4:-18417888 Msa1317260:CDS
TGTTTCTCAGAGAAAACAAT+GGG 0.532834 8_4:-18418659 Msa1317260:CDS
AAGGAAGAAGGTGAAGGTGG+TGG 0.534529 8_4:+18419975 None:intergenic
TGGTAAAATTTGGGTAATGG+TGG 0.534827 8_4:+18420420 None:intergenic
CACCTCCAAGTCACGAGGAT+AGG 0.534967 8_4:-18417955 Msa1317260:CDS
ACCTCCAAGTCACGAGGATA+GGG 0.535294 8_4:-18417954 Msa1317260:CDS
AATGAACAAGTTTATGAGGA+TGG 0.535360 8_4:-18416297 Msa1317260:CDS
AGATGGTAAAATTTGGGTAA+TGG 0.537096 8_4:+18420417 None:intergenic
TTAGTGTCACTGTGACATCT+TGG 0.537792 8_4:-18415803 Msa1317260:three_prime_UTR
GTTTCTCGATTTAGCGATGG+TGG 0.539594 8_4:+18419716 None:intergenic
TGTGAAGAAGGCCGCGACAA+TGG 0.539842 8_4:-18416441 Msa1317260:CDS
GGAAAGAAGAGAGTGTGAAA+AGG 0.539959 8_4:+18420377 None:intergenic
TTTGTGGAAAAGGTTGATGA+AGG 0.542138 8_4:+18420153 None:intergenic
ACAGGTGTTACTGATACACT+TGG 0.542268 8_4:-18417108 Msa1317260:intron
AATTTCAGCTGAGAATTTGG+TGG 0.542465 8_4:-18419409 Msa1317260:CDS
AATGAAGCAGCGGAAGCAAT+GGG 0.543262 8_4:-18418545 Msa1317260:CDS
GGTGGTGATGAAGGAGGTGA+TGG 0.543915 8_4:+18420098 None:intergenic
TGCTTCATTGGCATTGCAAG+TGG 0.544319 8_4:+18418559 None:intergenic
GATAGGGTATGCAAAGAAGT+TGG 0.544955 8_4:-18416122 Msa1317260:CDS
GGAGAAACCAATGTATTTGG+AGG 0.546058 8_4:+18418430 None:intergenic
GCAAAGGAAGAAGGTGAAGG+TGG 0.547065 8_4:+18419972 None:intergenic
TTCTCGATTTAGCGATGGTG+GGG 0.547201 8_4:+18419718 None:intergenic
GCAAACTCCTCCAAATACAT+TGG 0.548387 8_4:-18418437 Msa1317260:CDS
TCTATGAGCAGAACTAATCA+TGG 0.548946 8_4:+18416082 None:intergenic
AATTGGGTGCAGGTTGAATG+AGG 0.552324 8_4:-18418053 Msa1317260:intron
GATCCACGTGGAGCTGGTGG+TGG 0.552606 8_4:-18419624 Msa1317260:CDS
AGAAGGTGAAGGTGGTGGTG+GGG 0.552621 8_4:+18419980 None:intergenic
TGATCTAGCGAATGTGAAGA+AGG 0.554221 8_4:-18416453 Msa1317260:CDS
TTAGAGATGAAATGTTAGCT+GGG 0.555490 8_4:+18419943 None:intergenic
CTTTACCTCTAGAGTCTGAA+AGG 0.557119 8_4:+18416876 None:intergenic
GTGAGTTAGATAGAATCAAT+GGG 0.558277 8_4:-18415942 Msa1317260:three_prime_UTR
GGAAGTGTGTGAAGCACTGT+TGG 0.558493 8_4:-18417867 Msa1317260:CDS
TTTCTCGATTTAGCGATGGT+GGG 0.559284 8_4:+18419717 None:intergenic
TCCGGCGATGAAAGAAGCGT+TGG 0.561706 8_4:+18418805 None:intergenic
CAAGGCTCGATGTTCGATGA+AGG 0.562239 8_4:-18419540 Msa1317260:CDS
ATTTCAGCTGAGAATTTGGT+GGG 0.562793 8_4:-18419408 Msa1317260:CDS
GGGAATGAAGCAAAGGAAGA+AGG 0.563340 8_4:+18419963 None:intergenic
GAAGAAGATGAAGTGTTAGG+AGG 0.563915 8_4:+18420038 None:intergenic
AGACGGTGACTTGCATTCTC+CGG 0.564169 8_4:+18419110 None:intergenic
ATCCCAAACCATTTCACGAT+CGG 0.564571 8_4:+18418318 None:intergenic
GCTCGATACACTTCTCAAGC+TGG 0.564612 8_4:-18416654 Msa1317260:CDS
TAGAGGCCGTGCTCAAAACT+GGG 0.567552 8_4:-18416724 Msa1317260:CDS
TCTTCATAGCAATCATGGGT+TGG 0.568916 8_4:-18418899 Msa1317260:CDS
CTAGAAGCATTCGATAATCT+CGG 0.569242 8_4:+18418991 None:intergenic
GACTTCGCTCGTGAGGACTT+CGG 0.569518 8_4:+18416415 None:intergenic
TTCGATTAGTCTCTCTCCGC+CGG 0.570403 8_4:-18419313 Msa1317260:CDS
TCGTCACTCAATGTTGCGCT+CGG 0.570493 8_4:+18416524 None:intergenic
ACCAACGCTTCTTTCATCGC+CGG 0.572966 8_4:-18418806 Msa1317260:CDS
CAATTTCAGATGTTTCAGAT+CGG 0.575133 8_4:-18418864 Msa1317260:CDS
GTGCTCATTATATCTCTCTC+CGG 0.580272 8_4:+18418787 None:intergenic
GTTTATGAGGATGGCTGAGG+AGG 0.581248 8_4:-18416288 Msa1317260:CDS
TTCGTCGGTGAAAGATTCAA+CGG 0.583773 8_4:+18419081 None:intergenic
GTGTGTGAAGCACTGTTGGA+AGG 0.583862 8_4:-18417863 Msa1317260:intron
CGTCTCTTCCCTCGCGACGG+TGG 0.583926 8_4:-18419744 Msa1317260:CDS
CTTTGCATTGGGATAAAGTG+AGG 0.585023 8_4:-18418348 Msa1317260:CDS
AAGATCACAACCAAAGTCGC+CGG 0.588309 8_4:-18419274 Msa1317260:CDS
TTACCGCCGCTTATGCGACA+AGG 0.588541 8_4:-18419558 Msa1317260:CDS
ATCGAGCCTTGTCGCATAAG+CGG 0.588627 8_4:+18419552 None:intergenic
ATCATCGTCTTCTTCATCGT+CGG 0.589871 8_4:-18418962 Msa1317260:CDS
CAAGTTTATGAGGATGGCTG+AGG 0.589924 8_4:-18416291 Msa1317260:CDS
GATGGTGGTGGTGATGAAGG+AGG 0.590665 8_4:+18420092 None:intergenic
CTTCTTGGACTTAAACTCAC+CGG 0.591119 8_4:+18419294 None:intergenic
GTGGGGACGCCACCGTCGCG+AGG 0.591424 8_4:+18419735 None:intergenic
GCCGGAAAATGTTGTAACTC+CGG 0.592070 8_4:-18419256 Msa1317260:CDS
AACGTTTCTCGATTTAGCGA+TGG 0.592497 8_4:+18419713 None:intergenic
AAAGAGACATTACAGTTCCT+CGG 0.592779 8_4:-18416006 Msa1317260:CDS
ACAAAATTAAGGTGCTATCG+TGG 0.597187 8_4:-18415880 Msa1317260:three_prime_UTR
GAAGGAGGTTTCAATTCTGG+CGG 0.597623 8_4:+18418475 None:intergenic
CTAACAAGTAGTGGCTGTGT+CGG 0.598633 8_4:+18419231 None:intergenic
GTTTAGAGACTTCGCTCGTG+AGG 0.598816 8_4:+18416408 None:intergenic
GAAGGAGGTGATGGTGAAGG+AGG 0.598971 8_4:+18420107 None:intergenic
CCAACAGGAGTTGTTGGAGA+AGG 0.599161 8_4:+18418517 None:intergenic
TTCATTGGCATTGCAAGTGG+AGG 0.599474 8_4:+18418562 None:intergenic
GTTAGCTGGGAATGAAGCAA+AGG 0.599604 8_4:+18419956 None:intergenic
CCAACTTCACTAACAAGTAG+TGG 0.601777 8_4:+18419222 None:intergenic
CTCACTTTATCCCAATGCAA+AGG 0.604325 8_4:+18418349 None:intergenic
ATTCGTCTCTTCCCTCGCGA+CGG 0.606037 8_4:-18419747 Msa1317260:CDS
TCTCCAGAGAAAACCTTCGC+CGG 0.606052 8_4:-18419129 Msa1317260:CDS
GATGAAGGAGGTGATGGTGA+AGG 0.606651 8_4:+18420104 None:intergenic
TAAATCCTTTCAGACTCTAG+AGG 0.608370 8_4:-18416881 Msa1317260:intron
TCGATGTTCGATGAAGGTAA+TGG 0.608976 8_4:-18419534 Msa1317260:CDS
GTTGACGTTAAAGGTGCAGA+TGG 0.609955 8_4:-18416632 Msa1317260:CDS
TGAATCTTCATAGCAATCAT+GGG 0.610122 8_4:-18418903 Msa1317260:CDS
GCGGATCCAAACATGCGCTA+AGG 0.610792 8_4:+18415966 None:intergenic
CCTTCTCCAACAACTCCTGT+TGG 0.612388 8_4:-18418517 Msa1317260:CDS
GGAGATTGCGACGACAGCGA+CGG 0.612477 8_4:+18419845 None:intergenic
TTTGCATTGGGATAAAGTGA+GGG 0.612685 8_4:-18418347 Msa1317260:CDS
ATCACAAAAGGCCTTGAAGG+AGG 0.613059 8_4:+18418460 None:intergenic
CTGTTTCTCAGAGAAAACAA+TGG 0.614093 8_4:-18418660 Msa1317260:CDS
GAAGTGGTTGTGGAAGCATA+GGG 0.615204 8_4:+18416042 None:intergenic
TGGGGACGCCACCGTCGCGA+GGG 0.615297 8_4:+18419736 None:intergenic
GAAGAGACGAATACTACTGT+CGG 0.617100 8_4:+18419758 None:intergenic
TGCTTCCTAGAAGGTTGTGG+CGG 0.617302 8_4:+18418745 None:intergenic
AACTCCTGTTGGTCAACCGG+TGG 0.617457 8_4:-18418506 Msa1317260:CDS
TGTAAAATTGAATCAAACTG+CGG 0.617720 8_4:-18416354 Msa1317260:CDS
TGATTCTGCGAATTTACGAA+CGG 0.620646 8_4:+18416319 None:intergenic
TACACCAAATCCAAAACCAA+AGG 0.622056 8_4:-18418002 Msa1317260:CDS
GATGGTGAAGGAGGTTGTGA+AGG 0.623251 8_4:+18420116 None:intergenic
AATGTTCTTGAAGCTTCTAG+AGG 0.625174 8_4:-18416741 Msa1317260:CDS
CTAATCGAATGAGAACGATC+CGG 0.626287 8_4:+18419327 None:intergenic
CCTGATCCACGTGGAGCTGG+TGG 0.629722 8_4:-18419627 Msa1317260:CDS
AGATTCAACGGTGATAAAGA+CGG 0.631157 8_4:+18419093 None:intergenic
GATTGCGACGACAGCGACGG+CGG 0.632996 8_4:+18419848 None:intergenic
GACGACTCTCCAAACAAACT+CGG 0.633316 8_4:-18417012 Msa1317260:CDS
GAAGCAAAGGAAGAAGGTGA+AGG 0.634591 8_4:+18419969 None:intergenic
ATGACCCCATCAAAATCACC+TGG 0.636716 8_4:+18415749 None:intergenic
TCTGGCGGCCTACAAACCAC+CGG 0.638956 8_4:+18418490 None:intergenic
TATTGCTATCTTGCTTCGAG+CGG 0.641001 8_4:-18417906 Msa1317260:CDS
GAAAGTGGCAATGATGAAAG+AGG 0.642013 8_4:+18418829 None:intergenic
GACTTCGGAGTCCATTGTCG+CGG 0.643223 8_4:+18416430 None:intergenic
TTGCAATGCCAATGAAGCAG+CGG 0.645591 8_4:-18418555 Msa1317260:CDS
GGTTTGTTCCAACATTCATG+CGG 0.646426 8_4:+18416699 None:intergenic
AAGTTGGTAATATAAATGAA+AGG 0.649106 8_4:-18416106 Msa1317260:CDS
TGAATGCATGCGCATCACCT+CGG 0.653083 8_4:+18416678 None:intergenic
AGATTATCGAATGCTTCTAG+TGG 0.659854 8_4:-18418988 Msa1317260:CDS
ATGAATGTTGGAACAAACCG+AGG 0.666462 8_4:-18416695 Msa1317260:CDS
TCTGCGACAGTAAATGAAAG+CGG 0.666902 8_4:+18419824 None:intergenic
CCACCACCACCAGCTCCACG+TGG 0.668107 8_4:+18419621 None:intergenic
AGATGAACTATCATCATCCG+AGG 0.672198 8_4:+18415989 None:intergenic
CGGCAGTAATGGCGACGGCG+AGG 0.672765 8_4:+18419877 None:intergenic
GATGACGGCAGTAATGGCGA+CGG 0.680290 8_4:+18419872 None:intergenic
AAGAACAAGACTGCACGTGA+CGG 0.684747 8_4:+18419163 None:intergenic
ATGTTCGATGAAGGTAATGG+TGG 0.685836 8_4:-18419531 Msa1317260:CDS
TAGAGTTAGCAATAGTACCA+AGG 0.687738 8_4:+18419664 None:intergenic
CTTGGACTTAAACTCACCGG+CGG 0.693482 8_4:+18419297 None:intergenic
GAGCCTTGTCGCATAAGCGG+CGG 0.702357 8_4:+18419555 None:intergenic
TCTTACACCTCCAAGTCACG+AGG 0.721324 8_4:-18417960 Msa1317260:CDS
TCATTCGCCTCAAAACTAGG+TGG 0.733734 8_4:+18418397 None:intergenic
GGTGGTGCTAATGTTACAGG+TGG 0.742058 8_4:-18419513 Msa1317260:CDS
TGATTCTATCTAACTCACTG+CGG 0.749210 8_4:+18415947 None:intergenic
GGAGGTGTAAGAACTGAACG+TGG 0.758096 8_4:+18417971 None:intergenic
GATGAACTACCTGATCCACG+TGG 0.836548 8_4:-18419636 Msa1317260:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAAAATAAAATATTCATT+TGG + chr8_4:18420178-18420197 None:intergenic 10.0%
!!! ATTGTTATTGTTACTATTTT+TGG - chr8_4:18417706-18417725 Msa1317260:intron 15.0%
!!! TTTTAAAATCTAAAGTAGTT+TGG - chr8_4:18417789-18417808 Msa1317260:intron 15.0%
!!! TTGATTTAATTTAAGAAGTT+AGG - chr8_4:18418300-18418319 Msa1317260:CDS 15.0%
!!! TTGTTATAATGTGTTTTAAA+AGG - chr8_4:18418686-18418705 Msa1317260:CDS 15.0%
!! ACAATATAGCAATAAGATAA+TGG + chr8_4:18417647-18417666 None:intergenic 20.0%
!!! AATTTCTTATTTAAGTGTTG+TGG - chr8_4:18418103-18418122 Msa1317260:intron 20.0%
!! CAAATAAACAAAAACAAACA+AGG + chr8_4:18418151-18418170 None:intergenic 20.0%
!!! CTTGTTTGTTTTTGTTTATT+TGG - chr8_4:18418149-18418168 Msa1317260:intron 20.0%
!!! ATTTAATTTAAGAAGTTAGG+TGG - chr8_4:18418303-18418322 Msa1317260:CDS 20.0%
!! GTTAATTAATCATAATCGTT+TGG - chr8_4:18418561-18418580 Msa1317260:CDS 20.0%
!! CTTAATCAATATCTAAACAA+GGG + chr8_4:18418722-18418741 None:intergenic 20.0%
!! ACTTAATCAATATCTAAACA+AGG + chr8_4:18418723-18418742 None:intergenic 20.0%
!! GTAAATAAGTTAAACCAATT+TGG - chr8_4:18418741-18418760 Msa1317260:CDS 20.0%
!! ACTTGAAAGCTTATTAAAAA+TGG - chr8_4:18418803-18418822 Msa1317260:CDS 20.0%
!!! TTGATTCAATTTTACAATCT+CGG + chr8_4:18419521-18419540 None:intergenic 20.0%
!!! AAGTTGGTAATATAAATGAA+AGG - chr8_4:18419773-18419792 Msa1317260:CDS 20.0%
!! AAAAATCCTTGTAAAAGATT+TGG - chr8_4:18420207-18420226 Msa1317260:CDS 20.0%
!! AAAATCCTTGTAAAAGATTT+GGG - chr8_4:18420208-18420227 Msa1317260:CDS 20.0%
! AACATGAGATGGTAAAATTT+GGG + chr8_4:18415471-18415490 None:intergenic 25.0%
! TAACATGAGATGGTAAAATT+TGG + chr8_4:18415472-18415491 None:intergenic 25.0%
! TTGAAAAACATAACATGAGA+TGG + chr8_4:18415482-18415501 None:intergenic 25.0%
!!! ATAGCAATAAGATAATGGAA+TGG + chr8_4:18417642-18417661 None:intergenic 25.0%
!! AAATCTAAAGTAGTTTGGTT+TGG - chr8_4:18417794-18417813 Msa1317260:intron 25.0%
! GATGATAGAAACATTATTTG+TGG - chr8_4:18417850-18417869 Msa1317260:intron 25.0%
!!! GCAATATTTTGAGACTTTTT+CGG + chr8_4:18417959-18417978 None:intergenic 25.0%
!! TTTGTTTATTTGGAATCCTT+TGG - chr8_4:18418159-18418178 Msa1317260:intron 25.0%
!!! TTGCACATGATTTTAGTTAA+TGG - chr8_4:18418200-18418219 Msa1317260:intron 25.0%
! TTTAGTTAATGGTATGCAAA+TGG - chr8_4:18418211-18418230 Msa1317260:intron 25.0%
! CATAAACGTGAATCATTATA+AGG - chr8_4:18418495-18418514 Msa1317260:CDS 25.0%
! GTAAAAAAACTTTACACTGA+CGG + chr8_4:18418538-18418557 None:intergenic 25.0%
! AAAAAATCACAAACAGTCAT+AGG + chr8_4:18418633-18418652 None:intergenic 25.0%
!! ATGTACCTTTTGCATTTAAA+AGG - chr8_4:18418922-18418941 Msa1317260:CDS 25.0%
!! TGTACCTTTTGCATTTAAAA+GGG - chr8_4:18418923-18418942 Msa1317260:CDS 25.0%
! TGTAAAATTGAATCAAACTG+CGG - chr8_4:18419525-18419544 Msa1317260:CDS 25.0%
! AATCAATGAACAAGTTTATG+AGG - chr8_4:18419578-18419597 Msa1317260:CDS 25.0%
! TTGATGCTTCAACAAAATTA+AGG - chr8_4:18419988-18420007 Msa1317260:CDS 25.0%
!! TATAACCCAAATCTTTTACA+AGG + chr8_4:18420216-18420235 None:intergenic 25.0%
! TGATACATAACCTTCATAAA+AGG + chr8_4:18420295-18420314 None:intergenic 25.0%
! GTTGCTAATAAGCTATTAAT+AGG - chr8_4:18420365-18420384 Msa1317260:five_prime_UTR 25.0%
AGATGGTAAAATTTGGGTAA+TGG + chr8_4:18415465-18415484 None:intergenic 30.0%
!! TTTGTGTTGTTCTCTCTTTT+TGG + chr8_4:18415614-18415633 None:intergenic 30.0%
!!! AGATTGTTGTTTTGTGGAAA+AGG + chr8_4:18415739-18415758 None:intergenic 30.0%
!! GAAAATGGGTATTTTGGATT+TGG + chr8_4:18415814-18415833 None:intergenic 30.0%
! GTAGTAGAAAATGGGTATTT+TGG + chr8_4:18415820-18415839 None:intergenic 30.0%
TTAGAGATGAAATGTTAGCT+GGG + chr8_4:18415939-18415958 None:intergenic 30.0%
!!! ATTTGGTTTTTTGGGTTTGT+GGG + chr8_4:18415966-18415985 None:intergenic 30.0%
!!! AGAAGACGATTTGGTTTTTT+GGG + chr8_4:18415974-18415993 None:intergenic 30.0%
!!! AAGAAGACGATTTGGTTTTT+TGG + chr8_4:18415975-18415994 None:intergenic 30.0%
ACTCAATCTTGTAATGAAGA+TGG - chr8_4:18416855-18416874 Msa1317260:intron 30.0%
!! TTCATCATCGTCATTTTATC+CGG + chr8_4:18416960-18416979 None:intergenic 30.0%
ATGAATCTTCATAGCAATCA+TGG - chr8_4:18416975-18416994 Msa1317260:CDS 30.0%
TGAATCTTCATAGCAATCAT+GGG - chr8_4:18416976-18416995 Msa1317260:CDS 30.0%
! TCTGAAACATCTGAAATTGT+TGG + chr8_4:18417014-18417033 None:intergenic 30.0%
CAATTTCAGATGTTTCAGAT+CGG - chr8_4:18417015-18417034 Msa1317260:CDS 30.0%
!! ATTCAGCAATTGGTGTTAAA+AGG + chr8_4:18417175-18417194 None:intergenic 30.0%
TGTTTCTCAGAGAAAACAAT+GGG - chr8_4:18417220-18417239 Msa1317260:intron 30.0%
! TGGTTTGGATTGAATTGAAT+TGG - chr8_4:18417809-18417828 Msa1317260:intron 30.0%
GGTTTGGATTGAATTGAATT+GGG - chr8_4:18417810-18417829 Msa1317260:intron 30.0%
TTACTTGCAACAAAACATGA+GGG + chr8_4:18418058-18418077 None:intergenic 30.0%
ATTACTTGCAACAAAACATG+AGG + chr8_4:18418059-18418078 None:intergenic 30.0%
TGGTAACAAATCTAATCCAA+AGG + chr8_4:18418178-18418197 None:intergenic 30.0%
AACTAAAATCATGTGCAAGT+TGG + chr8_4:18418198-18418217 None:intergenic 30.0%
AATGGTAGTTGCACATTTAA+AGG - chr8_4:18418229-18418248 Msa1317260:intron 30.0%
GAGTTATACCAACACTAATT+TGG - chr8_4:18418262-18418281 Msa1317260:intron 30.0%
!!! AACCAATTTGGCTTTTTAAC+AGG - chr8_4:18418753-18418772 Msa1317260:CDS 30.0%
! TTCTGCTGAGAAATTTTTGA+AGG - chr8_4:18418890-18418909 Msa1317260:CDS 30.0%
! AATGATAGTGTAGTAGAATC+CGG - chr8_4:18419029-18419048 Msa1317260:CDS 30.0%
TAGTGATGTCCCATAATTTA+CGG - chr8_4:18419052-18419071 Msa1317260:CDS 30.0%
ATGGAAGAACCGTAAATTAT+GGG + chr8_4:18419064-18419083 None:intergenic 30.0%
AATGGAAGAACCGTAAATTA+TGG + chr8_4:18419065-18419084 None:intergenic 30.0%
CAAATGTTTCGATCAGAAAA+TGG + chr8_4:18419083-18419102 None:intergenic 30.0%
CAAGAAATCATTAGAACAGA+AGG - chr8_4:18419298-18419317 Msa1317260:CDS 30.0%
GAAGTCTCTAAACTTTCAAA+AGG - chr8_4:18419481-18419500 Msa1317260:CDS 30.0%
GTAAAATTGAATCAAACTGC+GGG - chr8_4:18419526-18419545 Msa1317260:CDS 30.0%
AATGAACAAGTTTATGAGGA+TGG - chr8_4:18419582-18419601 Msa1317260:CDS 30.0%
! TCATCCATTTAGAATCTTCA+TGG - chr8_4:18419708-18419727 Msa1317260:CDS 30.0%
ACTACCATGAAGATTCTAAA+TGG + chr8_4:18419715-18419734 None:intergenic 30.0%
ACTTCTTAACAGTTCTTGAT+AGG - chr8_4:18419740-18419759 Msa1317260:CDS 30.0%
CTTCTTAACAGTTCTTGATA+GGG - chr8_4:18419741-18419760 Msa1317260:CDS 30.0%
AGTGAGTTAGATAGAATCAA+TGG - chr8_4:18419936-18419955 Msa1317260:CDS 30.0%
GTGAGTTAGATAGAATCAAT+GGG - chr8_4:18419937-18419956 Msa1317260:CDS 30.0%
TAGAAAAACAACCTTTAACC+AGG - chr8_4:18420112-18420131 Msa1317260:CDS 30.0%
!! TTTAACCAGGTGATTTTGAT+GGG - chr8_4:18420125-18420144 Msa1317260:CDS 30.0%
TGTGTACAAAGCAATTCAAA+TGG - chr8_4:18420322-18420341 Msa1317260:five_prime_UTR 30.0%
AAGCAATTCAAATGGCAAAT+TGG - chr8_4:18420330-18420349 Msa1317260:five_prime_UTR 30.0%
! TGGTAAAATTTGGGTAATGG+TGG + chr8_4:18415462-18415481 None:intergenic 35.0%
CTTGGTTCATTTGATGAGAT+TGG + chr8_4:18415700-18415719 None:intergenic 35.0%
!! TTTGTGGAAAAGGTTGATGA+AGG + chr8_4:18415729-18415748 None:intergenic 35.0%
!!! TATTTTGGATTTGGTGATGG+TGG + chr8_4:18415805-18415824 None:intergenic 35.0%
! TAGGAGGTGTAGTAGAAAAT+GGG + chr8_4:18415828-18415847 None:intergenic 35.0%
! TTAGGAGGTGTAGTAGAAAA+TGG + chr8_4:18415829-18415848 None:intergenic 35.0%
! GAAGAAGAAGATGAAGTGTT+AGG + chr8_4:18415847-18415866 None:intergenic 35.0%
GTTAGAGATGAAATGTTAGC+TGG + chr8_4:18415940-18415959 None:intergenic 35.0%
!!! GATTTGGTTTTTTGGGTTTG+TGG + chr8_4:18415967-18415986 None:intergenic 35.0%
TAGAGTTAGCAATAGTACCA+AGG + chr8_4:18416218-18416237 None:intergenic 35.0%
!!! GAAGAGTTTTATTCTCCAAG+AGG - chr8_4:18416402-18416421 Msa1317260:CDS 35.0%
TCTCCAAGAGGTTCTTTAAA+CGG - chr8_4:18416414-18416433 Msa1317260:CDS 35.0%
TTTCCGTTTAAAGAACCTCT+TGG + chr8_4:18416420-18416439 None:intergenic 35.0%
AGAGGTTCTTTAAACGGAAA+TGG - chr8_4:18416420-18416439 Msa1317260:CDS 35.0%
GAGGTTCTTTAAACGGAAAT+GGG - chr8_4:18416421-18416440 Msa1317260:CDS 35.0%
TTCTTTAAACGGAAATGGGT+CGG - chr8_4:18416425-18416444 Msa1317260:CDS 35.0%
CAAATTCTCAGCTGAAATTC+CGG + chr8_4:18416469-18416488 None:intergenic 35.0%
AATTTCAGCTGAGAATTTGG+TGG - chr8_4:18416470-18416489 Msa1317260:CDS 35.0%
ATTTCAGCTGAGAATTTGGT+GGG - chr8_4:18416471-18416490 Msa1317260:CDS 35.0%
AGATTCAACGGTGATAAAGA+CGG + chr8_4:18416789-18416808 None:intergenic 35.0%
TCACCGACGAAAAATTTAGA+TGG - chr8_4:18416810-18416829 Msa1317260:intron 35.0%
CACCGACGAAAAATTTAGAT+GGG - chr8_4:18416811-18416830 Msa1317260:intron 35.0%
! GACCCATCTAAATTTTTCGT+CGG + chr8_4:18416816-18416835 None:intergenic 35.0%
!! CTAGAAGCATTCGATAATCT+CGG + chr8_4:18416891-18416910 None:intergenic 35.0%
AGATTATCGAATGCTTCTAG+TGG - chr8_4:18416891-18416910 Msa1317260:CDS 35.0%
! CTGTTTCTCAGAGAAAACAA+TGG - chr8_4:18417219-18417238 Msa1317260:intron 35.0%
!! GTAATTGGTGTTGAAAGAAC+AGG + chr8_4:18417251-18417270 None:intergenic 35.0%
! ACTCTACTAGAAGGTGTAAT+TGG + chr8_4:18417266-18417285 None:intergenic 35.0%
ACTGGAGAAACCAATGTATT+TGG + chr8_4:18417455-18417474 None:intergenic 35.0%
AAAGTTGAAGCCTTTGCATT+GGG - chr8_4:18417520-18417539 Msa1317260:intron 35.0%
TTTGCATTGGGATAAAGTGA+GGG - chr8_4:18417532-18417551 Msa1317260:intron 35.0%
! AAATGGTTTGGGATCATTTG+AGG - chr8_4:18417570-18417589 Msa1317260:intron 35.0%
AAACCCTTACTTAAAAGAGC+TGG + chr8_4:18417597-18417616 None:intergenic 35.0%
TACACCAAATCCAAAACCAA+AGG - chr8_4:18417877-18417896 Msa1317260:CDS 35.0%
TACTTGCAACAAAACATGAG+GGG + chr8_4:18418057-18418076 None:intergenic 35.0%
ACAAGGATTTACACAAGTGA+TGG + chr8_4:18418134-18418153 None:intergenic 35.0%
GATGTTTGCCAAATTAGTGT+TGG + chr8_4:18418273-18418292 None:intergenic 35.0%
! ATGCTTTTAGTAGTAACCAG+AGG + chr8_4:18418404-18418423 None:intergenic 35.0%
! CATAGGTATGACTTTAGAAG+TGG + chr8_4:18418616-18418635 None:intergenic 35.0%
CACCTGTTAAAAAGCCAAAT+TGG + chr8_4:18418758-18418777 None:intergenic 35.0%
! ACCTTTTGCATTTAAAAGGG+TGG - chr8_4:18418926-18418945 Msa1317260:CDS 35.0%
! TCCACCCTTTTAAATGCAAA+AGG + chr8_4:18418930-18418949 None:intergenic 35.0%
! AGCCAATTTTGAATCTGAAG+TGG - chr8_4:18418965-18418984 Msa1317260:CDS 35.0%
CTCCACTTCAGATTCAAAAT+TGG + chr8_4:18418970-18418989 None:intergenic 35.0%
TAAATCCTTTCAGACTCTAG+AGG - chr8_4:18418998-18419017 Msa1317260:CDS 35.0%
AAATTATGGGACATCACTAC+CGG + chr8_4:18419051-18419070 None:intergenic 35.0%
CTGATCGAAACATTTGTTTC+AGG - chr8_4:18419087-18419106 Msa1317260:CDS 35.0%
AATGTTCTTGAAGCTTCTAG+AGG - chr8_4:18419138-18419157 Msa1317260:CDS 35.0%
TGATTCTGCGAATTTACGAA+CGG + chr8_4:18419563-18419582 None:intergenic 35.0%
!! GAGATCACAGAGTATTTTCA+TGG - chr8_4:18419664-18419683 Msa1317260:CDS 35.0%
TCTATGAGCAGAACTAATCA+TGG + chr8_4:18419800-18419819 None:intergenic 35.0%
AAAGAGACATTACAGTTCCT+CGG - chr8_4:18419873-18419892 Msa1317260:CDS 35.0%
TGATTCTATCTAACTCACTG+CGG + chr8_4:18419935-18419954 None:intergenic 35.0%
!! TCAATGGGTTACTGTGATTT+AGG - chr8_4:18419952-18419971 Msa1317260:CDS 35.0%
! ACAAAATTAAGGTGCTATCG+TGG - chr8_4:18419999-18420018 Msa1317260:CDS 35.0%
CATCAAAATCACCTGGTTAA+AGG + chr8_4:18420126-18420145 None:intergenic 35.0%
! CTTTAACCAGGTGATTTTGA+TGG - chr8_4:18420124-18420143 Msa1317260:CDS 35.0%
!! TTAACCAGGTGATTTTGATG+GGG - chr8_4:18420126-18420145 Msa1317260:CDS 35.0%
! TAAGCTTGTGCCTTTTATGA+AGG - chr8_4:18420282-18420301 Msa1317260:five_prime_UTR 35.0%
! GGAAAGAAGAGAGTGTGAAA+AGG + chr8_4:18415505-18415524 None:intergenic 40.0%
AGGAGAAAGAAAGGAGAAGT+GGG + chr8_4:18415526-18415545 None:intergenic 40.0%
AAGGAGAAAGAAAGGAGAAG+TGG + chr8_4:18415527-18415546 None:intergenic 40.0%
AGTGATGAAGGAAGAGAGAA+GGG + chr8_4:18415555-18415574 None:intergenic 40.0%
!! GGTTGATGAAGGAATCTTCT+TGG + chr8_4:18415718-18415737 None:intergenic 40.0%
!!! GGTGAGAGATTGTTGTTTTG+TGG + chr8_4:18415745-18415764 None:intergenic 40.0%
!!! GGGTATTTTGGATTTGGTGA+TGG + chr8_4:18415808-18415827 None:intergenic 40.0%
! GAAGAAGATGAAGTGTTAGG+AGG + chr8_4:18415844-18415863 None:intergenic 40.0%
GAGTTTGGAAGAAGACGATT+TGG + chr8_4:18415983-18416002 None:intergenic 40.0%
TCTGCGACAGTAAATGAAAG+CGG + chr8_4:18416058-18416077 None:intergenic 40.0%
GAAGAGACGAATACTACTGT+CGG + chr8_4:18416124-18416143 None:intergenic 40.0%
TTTCTCGATTTAGCGATGGT+GGG + chr8_4:18416165-18416184 None:intergenic 40.0%
AACGTTTCTCGATTTAGCGA+TGG + chr8_4:18416169-18416188 None:intergenic 40.0%
AGCTCAGAGTTTCTTTACCT+TGG - chr8_4:18416198-18416217 Msa1317260:CDS 40.0%
TGGTCGGAATCCAAGAAAAA+TGG - chr8_4:18416278-18416297 Msa1317260:CDS 40.0%
TCGATGTTCGATGAAGGTAA+TGG - chr8_4:18416345-18416364 Msa1317260:CDS 40.0%
! ATGTTCGATGAAGGTAATGG+TGG - chr8_4:18416348-18416367 Msa1317260:CDS 40.0%
! AATGGTGGTGCTAATGTTAC+AGG - chr8_4:18416363-18416382 Msa1317260:CDS 40.0%
TCTTTAAACGGAAATGGGTC+GGG - chr8_4:18416426-18416445 Msa1317260:CDS 40.0%
CGGAATTTCAGCTGAGAATT+TGG - chr8_4:18416467-18416486 Msa1317260:CDS 40.0%
TTCATCTTCTTCTGCTTCAC+CGG - chr8_4:18416533-18416552 Msa1317260:CDS 40.0%
CTAATCGAATGAGAACGATC+CGG + chr8_4:18416555-18416574 None:intergenic 40.0%
CTTCTTGGACTTAAACTCAC+CGG + chr8_4:18416588-18416607 None:intergenic 40.0%
GACTTTGGTTGTGATCTTCT+TGG + chr8_4:18416603-18416622 None:intergenic 40.0%
CCAACTTCACTAACAAGTAG+TGG + chr8_4:18416660-18416679 None:intergenic 40.0%
! CCACTACTTGTTAGTGAAGT+TGG - chr8_4:18416657-18416676 Msa1317260:CDS 40.0%
TTCGTCGGTGAAAGATTCAA+CGG + chr8_4:18416801-18416820 None:intergenic 40.0%
ATCATCGTCTTCTTCATCGT+CGG - chr8_4:18416917-18416936 Msa1317260:CDS 40.0%
TCTTCATAGCAATCATGGGT+TGG - chr8_4:18416980-18416999 Msa1317260:CDS 40.0%
GAAAGTGGCAATGATGAAAG+AGG + chr8_4:18417053-18417072 None:intergenic 40.0%
GTGCTCATTATATCTCTCTC+CGG + chr8_4:18417095-18417114 None:intergenic 40.0%
!! ACAACCTTCTAGGAAGCATT+GGG - chr8_4:18417139-18417158 Msa1317260:intron 40.0%
!! GCAATTGGTGTTAAAAGGTC+AGG + chr8_4:18417170-18417189 None:intergenic 40.0%
ATAGCTGGTGATTCAGCAAT+TGG + chr8_4:18417185-18417204 None:intergenic 40.0%
GCAGTCTGATTCAAAATAGC+TGG + chr8_4:18417200-18417219 None:intergenic 40.0%
CTTGAAGGAGGTTTCAATTC+TGG + chr8_4:18417410-18417429 None:intergenic 40.0%
CAGAATTGAAACCTCCTTCA+AGG - chr8_4:18417408-18417427 Msa1317260:intron 40.0%
GCAAACTCCTCCAAATACAT+TGG - chr8_4:18417442-18417461 Msa1317260:intron 40.0%
GGAGAAACCAATGTATTTGG+AGG + chr8_4:18417452-18417471 None:intergenic 40.0%
TCTTCATTCGCCTCAAAACT+AGG + chr8_4:18417488-18417507 None:intergenic 40.0%
!!! TAGTTTTGAGGCGAATGAAG+AGG - chr8_4:18417487-18417506 Msa1317260:intron 40.0%
CAATGCAAAGGCTTCAACTT+TGG + chr8_4:18417521-18417540 None:intergenic 40.0%
CAAAGTTGAAGCCTTTGCAT+TGG - chr8_4:18417519-18417538 Msa1317260:intron 40.0%
CTCACTTTATCCCAATGCAA+AGG + chr8_4:18417533-18417552 None:intergenic 40.0%
CTTTGCATTGGGATAAAGTG+AGG - chr8_4:18417531-18417550 Msa1317260:intron 40.0%
TTCCGATCGTGAAATGGTTT+GGG - chr8_4:18417559-18417578 Msa1317260:intron 40.0%
ATCCCAAACCATTTCACGAT+CGG + chr8_4:18417564-18417583 None:intergenic 40.0%
!! AGGTCCAGCTCTTTTAAGTA+AGG - chr8_4:18417590-18417609 Msa1317260:intron 40.0%
!! GGTCCAGCTCTTTTAAGTAA+GGG - chr8_4:18417591-18417610 Msa1317260:intron 40.0%
GATTGAATTGAATTGGGTGC+AGG - chr8_4:18417816-18417835 Msa1317260:intron 40.0%
!!! GCATCCTTTGGTTTTGGATT+TGG + chr8_4:18417884-18417903 None:intergenic 40.0%
TATTGCTATCTTGCTTCGAG+CGG - chr8_4:18417973-18417992 Msa1317260:CDS 40.0%
!! GCTGTTTTATAGCTATCCTC+TGG - chr8_4:18418385-18418404 Msa1317260:CDS 40.0%
!! ACAGGTGTTACTGATACACT+TGG - chr8_4:18418771-18418790 Msa1317260:CDS 40.0%
ATTAAAAATGGCGCCAAGCA+AGG - chr8_4:18418815-18418834 Msa1317260:CDS 40.0%
!! CTTTACCTCTAGAGTCTGAA+AGG + chr8_4:18419006-18419025 None:intergenic 40.0%
! GGTTTGTTCCAACATTCATG+CGG + chr8_4:18419183-18419202 None:intergenic 40.0%
ATGAATGTTGGAACAAACCG+AGG - chr8_4:18419184-18419203 Msa1317260:CDS 40.0%
TGATCTAGCGAATGTGAAGA+AGG - chr8_4:18419426-18419445 Msa1317260:CDS 40.0%
GATAGGGTATGCAAAGAAGT+TGG - chr8_4:18419757-18419776 Msa1317260:CDS 40.0%
TTTCCATGTAATCCAGGAAG+TGG + chr8_4:18419856-18419875 None:intergenic 40.0%
TGTCTCTTTCCATGTAATCC+AGG + chr8_4:18419862-18419881 None:intergenic 40.0%
AGATGAACTATCATCATCCG+AGG + chr8_4:18419893-18419912 None:intergenic 40.0%
GCGATTCCAAATATGCAGTT+AGG - chr8_4:18420038-18420057 Msa1317260:CDS 40.0%
CAGACACCTAACTGCATATT+TGG + chr8_4:18420047-18420066 None:intergenic 40.0%
! TTAGTGTCACTGTGACATCT+TGG - chr8_4:18420076-18420095 Msa1317260:CDS 40.0%
GGCAAATTGGAGACAACATT+TGG - chr8_4:18420343-18420362 Msa1317260:five_prime_UTR 40.0%
GGGAGAGAAAGGAGAAAGAA+AGG + chr8_4:18415535-18415554 None:intergenic 45.0%
GAGTGATGAAGGAAGAGAGA+AGG + chr8_4:18415556-18415575 None:intergenic 45.0%
GAGAGAGTAGAGAGTGATGA+AGG + chr8_4:18415567-18415586 None:intergenic 45.0%
!! TTTGGATTTGGTGATGGTGG+TGG + chr8_4:18415802-18415821 None:intergenic 45.0%
! GAGGGGTATGTAGGGAAAAA+GGG + chr8_4:18415877-18415896 None:intergenic 45.0%
! TGAGGGGTATGTAGGGAAAA+AGG + chr8_4:18415878-18415897 None:intergenic 45.0%
GAAGCAAAGGAAGAAGGTGA+AGG + chr8_4:18415913-18415932 None:intergenic 45.0%
GGGAATGAAGCAAAGGAAGA+AGG + chr8_4:18415919-18415938 None:intergenic 45.0%
GTTAGCTGGGAATGAAGCAA+AGG + chr8_4:18415926-18415945 None:intergenic 45.0%
TTCTCGATTTAGCGATGGTG+GGG + chr8_4:18416164-18416183 None:intergenic 45.0%
GTTTCTCGATTTAGCGATGG+TGG + chr8_4:18416166-18416185 None:intergenic 45.0%
! TCCAAGAAAAATGGACTCGC+CGG - chr8_4:18416287-18416306 Msa1317260:CDS 45.0%
AAGATCACAACCAAAGTCGC+CGG - chr8_4:18416605-18416624 Msa1317260:CDS 45.0%
! ACAACATTTTCCGGCGACTT+TGG + chr8_4:18416618-18416637 None:intergenic 45.0%
GCCGGAAAATGTTGTAACTC+CGG - chr8_4:18416623-18416642 Msa1317260:CDS 45.0%
! GCCGGAGTTACAACATTTTC+CGG + chr8_4:18416627-18416646 None:intergenic 45.0%
CTAACAAGTAGTGGCTGTGT+CGG + chr8_4:18416651-18416670 None:intergenic 45.0%
AAGAACAAGACTGCACGTGA+CGG + chr8_4:18416719-18416738 None:intergenic 45.0%
!! ATCGTCATTTTATCCGGCGA+TGG + chr8_4:18416954-18416973 None:intergenic 45.0%
!! GAAAGAAGCGTTGGTGAAAG+TGG + chr8_4:18417068-18417087 None:intergenic 45.0%
CAATGCTTCCTAGAAGGTTG+TGG + chr8_4:18417140-18417159 None:intergenic 45.0%
! CACAACCTTCTAGGAAGCAT+TGG - chr8_4:18417138-18417157 Msa1317260:intron 45.0%
ATCTCCCAATGCTTCCTAGA+AGG + chr8_4:18417146-18417165 None:intergenic 45.0%
GGAGCTGAAACTCTACTAGA+AGG + chr8_4:18417275-18417294 None:intergenic 45.0%
TTCATTGGCATTGCAAGTGG+AGG + chr8_4:18417320-18417339 None:intergenic 45.0%
TGCTTCATTGGCATTGCAAG+TGG + chr8_4:18417323-18417342 None:intergenic 45.0%
TTGCAATGCCAATGAAGCAG+CGG - chr8_4:18417324-18417343 Msa1317260:intron 45.0%
AATGAAGCAGCGGAAGCAAT+GGG - chr8_4:18417334-18417353 Msa1317260:intron 45.0%
AACAACTCCTGTTGGTCAAC+CGG - chr8_4:18417370-18417389 Msa1317260:intron 45.0%
GAAGGAGGTTTCAATTCTGG+CGG + chr8_4:18417407-18417426 None:intergenic 45.0%
ATCACAAAAGGCCTTGAAGG+AGG + chr8_4:18417422-18417441 None:intergenic 45.0%
TGCATCACAAAAGGCCTTGA+AGG + chr8_4:18417425-18417444 None:intergenic 45.0%
GGAGGAGTTTGCATCACAAA+AGG + chr8_4:18417434-18417453 None:intergenic 45.0%
AAACTAGGTGGCAACTCAAC+TGG + chr8_4:18417473-18417492 None:intergenic 45.0%
!!! TGAGTTGCCACCTAGTTTTG+AGG - chr8_4:18417475-18417494 Msa1317260:intron 45.0%
TCATTCGCCTCAAAACTAGG+TGG + chr8_4:18417485-18417504 None:intergenic 45.0%
AACCATTTCACGATCGGAAC+TGG + chr8_4:18417558-18417577 None:intergenic 45.0%
GTTCCGATCGTGAAATGGTT+TGG - chr8_4:18417558-18417577 Msa1317260:intron 45.0%
! AATTGGGTGCAGGTTGAATG+AGG - chr8_4:18417826-18417845 Msa1317260:intron 45.0%
!! GGAGTAGCATCCTTTGGTTT+TGG + chr8_4:18417890-18417909 None:intergenic 45.0%
AATACCCTATCCTCGTGACT+TGG + chr8_4:18417932-18417951 None:intergenic 45.0%
AAGTCACGAGGATAGGGTAT+TGG - chr8_4:18417931-18417950 Msa1317260:CDS 45.0%
GCTTCGAGCGGTTAATGTTA+CGG - chr8_4:18417985-18418004 Msa1317260:CDS 45.0%
AGCGGTTAATGTTACGGTAG+AGG - chr8_4:18417991-18418010 Msa1317260:CDS 45.0%
! GGAAGAAGAGCGCAAATTGA+AGG - chr8_4:18418836-18418855 Msa1317260:CDS 45.0%
GACGACTCTCCAAACAAACT+CGG - chr8_4:18418867-18418886 Msa1317260:CDS 45.0%
! TCAGCAGAACCGAGTTTGTT+TGG + chr8_4:18418879-18418898 None:intergenic 45.0%
CTCAAGCTGGTTGACGTTAA+AGG - chr8_4:18419238-18419257 Msa1317260:CDS 45.0%
! GTTGACGTTAAAGGTGCAGA+TGG - chr8_4:18419247-18419266 Msa1317260:CDS 45.0%
AAGACCAAGTCTTCTGCACT+TGG + chr8_4:18419383-18419402 None:intergenic 45.0%
CAAGTTTATGAGGATGGCTG+AGG - chr8_4:18419588-18419607 Msa1317260:CDS 45.0%
! GAAGTGGTTGTGGAAGCATA+GGG + chr8_4:18419840-18419859 None:intergenic 45.0%
TGTAATCCAGGAAGTGGTTG+TGG + chr8_4:18419850-18419869 None:intergenic 45.0%
CAACCACTTCCTGGATTACA+TGG - chr8_4:18419850-18419869 Msa1317260:CDS 45.0%
TCATCTCCTTAGCGCATGTT+TGG - chr8_4:18419907-18419926 Msa1317260:CDS 45.0%
ATGACCCCATCAAAATCACC+TGG + chr8_4:18420133-18420152 None:intergenic 45.0%
!! AGGTGATTTTGATGGGGTCA+TGG - chr8_4:18420132-18420151 Msa1317260:CDS 45.0%
!! TGATTTTGATGGGGTCATGG+AGG - chr8_4:18420135-18420154 Msa1317260:CDS 45.0%
!! GATTTTGATGGGGTCATGGA+GGG - chr8_4:18420136-18420155 Msa1317260:CDS 45.0%
!! AAAAAATAAAATATTCATTT+GGG + chr8_4:18420177-18420196 None:intergenic 5.0%
GGAAGAGAGAAGGGAGAGAA+AGG + chr8_4:18415546-18415565 None:intergenic 50.0%
GATGGTGAAGGAGGTTGTGA+AGG + chr8_4:18415766-18415785 None:intergenic 50.0%
! GATGAAGGAGGTGATGGTGA+AGG + chr8_4:18415778-18415797 None:intergenic 50.0%
GGGTATGTAGGGAAAAAGGG+AGG + chr8_4:18415874-18415893 None:intergenic 50.0%
! AAGAAGGTGAAGGTGGTGGT+GGG + chr8_4:18415903-18415922 None:intergenic 50.0%
AAGGAAGAAGGTGAAGGTGG+TGG + chr8_4:18415907-18415926 None:intergenic 50.0%
GCAAAGGAAGAAGGTGAAGG+TGG + chr8_4:18415910-18415929 None:intergenic 50.0%
GATGAACTACCTGATCCACG+TGG - chr8_4:18416243-18416262 Msa1317260:CDS 50.0%
!! TCCGGCGAGTCCATTTTTCT+TGG + chr8_4:18416291-18416310 None:intergenic 50.0%
! ATCGAGCCTTGTCGCATAAG+CGG + chr8_4:18416330-18416349 None:intergenic 50.0%
CAAGGCTCGATGTTCGATGA+AGG - chr8_4:18416339-18416358 Msa1317260:CDS 50.0%
! GGTGGTGCTAATGTTACAGG+TGG - chr8_4:18416366-18416385 Msa1317260:CDS 50.0%
! GGTTCTCGGAGAGTTTTTGC+CGG - chr8_4:18416447-18416466 Msa1317260:CDS 50.0%
!! TTCGATTAGTCTCTCTCCGC+CGG - chr8_4:18416566-18416585 Msa1317260:CDS 50.0%
CTTGGACTTAAACTCACCGG+CGG + chr8_4:18416585-18416604 None:intergenic 50.0%
TCTCCAGAGAAAACCTTCGC+CGG - chr8_4:18416750-18416769 Msa1317260:CDS 50.0%
! AGACGGTGACTTGCATTCTC+CGG + chr8_4:18416772-18416791 None:intergenic 50.0%
ACCAACGCTTCTTTCATCGC+CGG - chr8_4:18417073-18417092 Msa1317260:CDS 50.0%
TGCTTCCTAGAAGGTTGTGG+CGG + chr8_4:18417137-18417156 None:intergenic 50.0%
ATTGGCATTGCAAGTGGAGG+TGG + chr8_4:18417317-18417336 None:intergenic 50.0%
CATTGCTTCCGCTGCTTCAT+TGG + chr8_4:18417335-18417354 None:intergenic 50.0%
CAATGAAGCAGCGGAAGCAA+TGG - chr8_4:18417333-18417352 Msa1317260:intron 50.0%
CCAACAGGAGTTGTTGGAGA+AGG + chr8_4:18417365-18417384 None:intergenic 50.0%
CCTTCTCCAACAACTCCTGT+TGG - chr8_4:18417362-18417381 Msa1317260:intron 50.0%
GGTTGACCAACAGGAGTTGT+TGG + chr8_4:18417371-18417390 None:intergenic 50.0%
! TTGGTCAACCGGTGGTTTGT+AGG - chr8_4:18417381-18417400 Msa1317260:intron 50.0%
GAACGTGGAGTAGCATCCTT+TGG + chr8_4:18417896-18417915 None:intergenic 50.0%
! GGAGGTGTAAGAACTGAACG+TGG + chr8_4:18417911-18417930 None:intergenic 50.0%
TCTTACACCTCCAAGTCACG+AGG - chr8_4:18417919-18417938 Msa1317260:CDS 50.0%
ACCTCCAAGTCACGAGGATA+GGG - chr8_4:18417925-18417944 Msa1317260:CDS 50.0%
!! GGAAGTGTGTGAAGCACTGT+TGG - chr8_4:18418012-18418031 Msa1317260:CDS 50.0%
!! GTGTGTGAAGCACTGTTGGA+AGG - chr8_4:18418016-18418035 Msa1317260:CDS 50.0%
TTGCGCTCTTCTTCCTTGCT+TGG + chr8_4:18418831-18418850 None:intergenic 50.0%
TAGAGGCCGTGCTCAAAACT+GGG - chr8_4:18419155-18419174 Msa1317260:CDS 50.0%
ACTGGGAACCGCATGAATGT+TGG - chr8_4:18419172-18419191 Msa1317260:CDS 50.0%
TGAATGCATGCGCATCACCT+CGG + chr8_4:18419204-18419223 None:intergenic 50.0%
GCTCGATACACTTCTCAAGC+TGG - chr8_4:18419225-18419244 Msa1317260:CDS 50.0%
TCGTCACTCAATGTTGCGCT+CGG + chr8_4:18419358-18419377 None:intergenic 50.0%
GATGCCAAGTGCAGAAGACT+TGG - chr8_4:18419376-18419395 Msa1317260:CDS 50.0%
GTTTAGAGACTTCGCTCGTG+AGG + chr8_4:18419474-18419493 None:intergenic 50.0%
GTTTATGAGGATGGCTGAGG+AGG - chr8_4:18419591-18419610 Msa1317260:CDS 50.0%
AGCATAGGGTTCACTGGAAC+AGG + chr8_4:18419826-18419845 None:intergenic 50.0%
! TGTGGAAGCATAGGGTTCAC+TGG + chr8_4:18419832-18419851 None:intergenic 50.0%
! GGAAGTGGTTGTGGAAGCAT+AGG + chr8_4:18419841-18419860 None:intergenic 50.0%
ATGCTTCCACAACCACTTCC+TGG - chr8_4:18419841-18419860 Msa1317260:CDS 50.0%
! ATGGAGGGTGCATTATGGTC+TGG - chr8_4:18420151-18420170 Msa1317260:CDS 50.0%
! GAAGGAGGTGATGGTGAAGG+AGG + chr8_4:18415775-18415794 None:intergenic 55.0%
! GGTGGTGATGAAGGAGGTGA+TGG + chr8_4:18415784-18415803 None:intergenic 55.0%
!! GATGGTGGTGGTGATGAAGG+AGG + chr8_4:18415790-18415809 None:intergenic 55.0%
!! GGTGATGGTGGTGGTGATGA+AGG + chr8_4:18415793-18415812 None:intergenic 55.0%
! GTGGGGTTGAGGGGTATGTA+GGG + chr8_4:18415885-18415904 None:intergenic 55.0%
! AGAAGGTGAAGGTGGTGGTG+GGG + chr8_4:18415902-18415921 None:intergenic 55.0%
! GAAGAAGGTGAAGGTGGTGG+TGG + chr8_4:18415904-18415923 None:intergenic 55.0%
! GATGACGGCAGTAATGGCGA+CGG + chr8_4:18416010-18416029 None:intergenic 55.0%
ATTCGTCTCTTCCCTCGCGA+CGG - chr8_4:18416132-18416151 Msa1317260:CDS 55.0%
TGTCGCATAAGCGGCGGTAA+CGG + chr8_4:18416321-18416340 None:intergenic 55.0%
TTACCGCCGCTTATGCGACA+AGG - chr8_4:18416321-18416340 Msa1317260:CDS 55.0%
ACGGAAATGGGTCGGGTTCT+CGG - chr8_4:18416433-18416452 Msa1317260:CDS 55.0%
GAAGCTCGTTGTCGTCGTCA+CGG - chr8_4:18416682-18416701 Msa1317260:CDS 55.0%
AAGCTCGTTGTCGTCGTCAC+GGG - chr8_4:18416683-18416702 Msa1317260:CDS 55.0%
! TCTCCGGCGAAGGTTTTCTC+TGG + chr8_4:18416756-18416775 None:intergenic 55.0%
! TGACTTGCATTCTCCGGCGA+AGG + chr8_4:18416766-18416785 None:intergenic 55.0%
GGCGTTTACTTTGCCATCGC+CGG - chr8_4:18416938-18416957 Msa1317260:CDS 55.0%
! TCCGGCGATGAAAGAAGCGT+TGG + chr8_4:18417077-18417096 None:intergenic 55.0%
TTCCTAGAAGGTTGTGGCGG+CGG + chr8_4:18417134-18417153 None:intergenic 55.0%
! ATTGCAAGTGGAGGTGGTGG+TGG + chr8_4:18417311-18417330 None:intergenic 55.0%
AACTCCTGTTGGTCAACCGG+TGG - chr8_4:18417373-18417392 Msa1317260:intron 55.0%
! CAAACCACCGGTTGACCAAC+AGG + chr8_4:18417380-18417399 None:intergenic 55.0%
GGCCAGTTCCGATCGTGAAA+TGG - chr8_4:18417553-18417572 Msa1317260:intron 55.0%
CACCTCCAAGTCACGAGGAT+AGG - chr8_4:18417924-18417943 Msa1317260:CDS 55.0%
! ACCCTATCCTCGTGACTTGG+AGG + chr8_4:18417929-18417948 None:intergenic 55.0%
CTAGAGGCCGTGCTCAAAAC+TGG - chr8_4:18419154-18419173 Msa1317260:CDS 55.0%
!!! GCGGTTCCCAGTTTTGAGCA+CGG + chr8_4:18419164-18419183 None:intergenic 55.0%
TGTGAAGAAGGCCGCGACAA+TGG - chr8_4:18419438-18419457 Msa1317260:CDS 55.0%
GACTTCGGAGTCCATTGTCG+CGG + chr8_4:18419452-18419471 None:intergenic 55.0%
GACTTCGCTCGTGAGGACTT+CGG + chr8_4:18419467-18419486 None:intergenic 55.0%
GCGGATCCAAACATGCGCTA+AGG + chr8_4:18419916-18419935 None:intergenic 55.0%
! GGGTCATGGAGGGTGCATTA+TGG - chr8_4:18420146-18420165 Msa1317260:CDS 55.0%
! GGTGGGGTTGAGGGGTATGT+AGG + chr8_4:18415886-18415905 None:intergenic 60.0%
!! AAGGTGGTGGTGGGGTTGAG+GGG + chr8_4:18415894-18415913 None:intergenic 60.0%
!! GAAGGTGGTGGTGGGGTTGA+GGG + chr8_4:18415895-18415914 None:intergenic 60.0%
!! TGAAGGTGGTGGTGGGGTTG+AGG + chr8_4:18415896-18415915 None:intergenic 60.0%
AATGGCGACGGCGAGGAGTT+TGG + chr8_4:18415998-18416017 None:intergenic 60.0%
GGAGATTGCGACGACAGCGA+CGG + chr8_4:18416037-18416056 None:intergenic 60.0%
CTACCTGATCCACGTGGAGC+TGG - chr8_4:18416249-18416268 Msa1317260:CDS 60.0%
! GAGCCTTGTCGCATAAGCGG+CGG + chr8_4:18416327-18416346 None:intergenic 60.0%
! AGTAGTGGCTGTGTCGGTGC+CGG + chr8_4:18416645-18416664 None:intergenic 60.0%
GGCATTGCAAGTGGAGGTGG+TGG + chr8_4:18417314-18417333 None:intergenic 60.0%
TCTGGCGGCCTACAAACCAC+CGG + chr8_4:18417392-18417411 None:intergenic 60.0%
! GGCGGCGATGACGGCAGTAA+TGG + chr8_4:18416016-18416035 None:intergenic 65.0%
GATTGCGACGACAGCGACGG+CGG + chr8_4:18416034-18416053 None:intergenic 65.0%
CCACCAGCTCCACGTGGATC+AGG + chr8_4:18416255-18416274 None:intergenic 65.0%
CCTGATCCACGTGGAGCTGG+TGG - chr8_4:18416252-18416271 Msa1317260:CDS 65.0%
GATCCACGTGGAGCTGGTGG+TGG - chr8_4:18416255-18416274 Msa1317260:CDS 65.0%
!! GTGGAGCTGGTGGTGGTGGT+CGG - chr8_4:18416262-18416281 Msa1317260:CDS 65.0%
! GGCGGTAACGGCTGTAGCTC+CGG + chr8_4:18416309-18416328 None:intergenic 65.0%
CTAGAAGGTTGTGGCGGCGG+CGG + chr8_4:18417131-18417150 None:intergenic 65.0%
!! GCAAGTGGAGGTGGTGGTGG+CGG + chr8_4:18417308-18417327 None:intergenic 65.0%
CGGCAGTAATGGCGACGGCG+AGG + chr8_4:18416005-18416024 None:intergenic 70.0%
GACAGCGACGGCGGCGATGA+CGG + chr8_4:18416025-18416044 None:intergenic 70.0%
CGTCTCTTCCCTCGCGACGG+TGG - chr8_4:18416135-18416154 Msa1317260:CDS 70.0%
CCACCACCACCAGCTCCACG+TGG + chr8_4:18416261-18416280 None:intergenic 70.0%
!! CCACGTGGAGCTGGTGGTGG+TGG - chr8_4:18416258-18416277 Msa1317260:CDS 70.0%
CGCCGCCGCCACAACCTTCT+AGG - chr8_4:18417129-18417148 Msa1317260:intron 70.0%
!! AGTGGAGGTGGTGGTGGCGG+TGG + chr8_4:18417305-18417324 None:intergenic 70.0%
TGGGGACGCCACCGTCGCGA+GGG + chr8_4:18416146-18416165 None:intergenic 75.0%
GAAGGTTGTGGCGGCGGCGG+TGG + chr8_4:18417128-18417147 None:intergenic 75.0%
!! GGTGGTGGCGGTGGTGGTGG+AGG + chr8_4:18417296-18417315 None:intergenic 75.0%
!! GGTGGTGGTGGCGGTGGTGG+TGG + chr8_4:18417299-18417318 None:intergenic 75.0%
!! GGAGGTGGTGGTGGCGGTGG+TGG + chr8_4:18417302-18417321 None:intergenic 75.0%
! GTGGGGACGCCACCGTCGCG+AGG + chr8_4:18416147-18416166 None:intergenic 80.0%
!! TGTGGCGGCGGCGGTGGTGG+TGG + chr8_4:18417122-18417141 None:intergenic 80.0%
! GGTTGTGGCGGCGGCGGTGG+TGG + chr8_4:18417125-18417144 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 18415457 18420444 18415457 ID=Msa1317260;Name=Msa1317260
chr8_4 mRNA 18415457 18420444 18415457 ID=Msa1317260-mRNA-1;Parent=Msa1317260;Name=Msa1317260-mRNA-1;_AED=0.02;_eAED=0.02;_QI=189|1|1|1|1|1|4|526|1071
chr8_4 exon 18415457 18416792 18415457 ID=Msa1317260-mRNA-1:exon:6805;Parent=Msa1317260-mRNA-1
chr8_4 exon 18416882 18417126 18416882 ID=Msa1317260-mRNA-1:exon:6804;Parent=Msa1317260-mRNA-1
chr8_4 exon 18417864 18418063 18417864 ID=Msa1317260-mRNA-1:exon:6803;Parent=Msa1317260-mRNA-1
chr8_4 exon 18418295 18420444 18418295 ID=Msa1317260-mRNA-1:exon:6802;Parent=Msa1317260-mRNA-1
chr8_4 five_prime_UTR 18420256 18420444 18420256 ID=Msa1317260-mRNA-1:five_prime_utr;Parent=Msa1317260-mRNA-1
chr8_4 CDS 18418295 18420255 18418295 ID=Msa1317260-mRNA-1:cds;Parent=Msa1317260-mRNA-1
chr8_4 CDS 18417864 18418063 18417864 ID=Msa1317260-mRNA-1:cds;Parent=Msa1317260-mRNA-1
chr8_4 CDS 18416882 18417126 18416882 ID=Msa1317260-mRNA-1:cds;Parent=Msa1317260-mRNA-1
chr8_4 CDS 18415983 18416792 18415983 ID=Msa1317260-mRNA-1:cds;Parent=Msa1317260-mRNA-1
chr8_4 three_prime_UTR 18415457 18415982 18415457 ID=Msa1317260-mRNA-1:three_prime_utr;Parent=Msa1317260-mRNA-1
Gene Sequence

>Msa1317260

ATGTGCTATCACTCTTTCTTCTTCTTCTTATGCATTCTCATCTTCTTCAAACCAATCTCATCAAATGAACCAAGAAGATTCCTTCATCAACCTTTTCCACAAAACAACAATCTCTCACCTTCACAACCTCCTTCACCATCACCTCCTTCATCACCACCACCATCACCAAATCCAAAATACCCATTTTCTACTACACCTCCTAACACTTCATCTTCTTCTTCTACACCTCCCTTTTTCCCTACATACCCCTCAACCCCACCACCACCTTCACCTTCTTCCTTTGCTTCATTCCCAGCTAACATTTCATCTCTAACTATCCCACAAACCCAAAAAACCAAATCGTCTTCTTCCAAACTCCTCGCCGTCGCCATTACTGCCGTCATCGCCGCCGTCGCTGTCGTCGCAATCTCCGCTTTCATTTACTGTCGCAGAAGTCGCAGTAAAAGATTCTTAGCTGATGATAAAACACTCAGATCCGACAGTAGTATTCGTCTCTTCCCTCGCGACGGTGGCGTCCCCACCATCGCTAAATCGAGAAACGTTTCTTCTACTAGCTCAGAGTTTCTTTACCTTGGTACTATTGCTAACTCTAGAAGCGATGAACTACCTGATCCACGTGGAGCTGGTGGTGGTGGTCGGAATCCAAGAAAAATGGACTCGCCGGAGCTACAGCCGTTACCGCCGCTTATGCGACAAGGCTCGATGTTCGATGAAGGTAATGGTGGTGCTAATGTTACAGGTGGTGAAGATGATGAAGAAGAGTTTTATTCTCCAAGAGGTTCTTTAAACGGAAATGGGTCGGGTTCTCGGAGAGTTTTTGCCGGAATTTCAGCTGAGAATTTGGTGGGTCGAAGTAGCAGTGAATCTACTTCTTCATCTTCTTCGTATTCATCTTCTTCTGCTTCACCGGATCGTTCTCATTCGATTAGTCTCTCTCCGCCGGTGAGTTTAAGTCCAAGAAGATCACAACCAAAGTCGCCGGAAAATGTTGTAACTCCGGCACCGACACAGCCACTACTTGTTAGTGAAGTTGGAAGAAGCTCGTTGTCGTCGTCACGGGCTTCTTCTAACCGTCACGTGCAGTCTTGTTCTTCTATGTCTTCATCTCCAGAGAAAACCTTCGCCGGAGAATGCAAGTCACCGTCTTTATCACCGTTGAATCTTTCACCGACGAAAAATTTAGATGGGTCTTTTGTAAAAGTTGAAAAGACTCAATCTTGTAATGAAGATGGTTCTTCTTCGCCGAGATTATCGAATGCTTCTAGTGGTAAATCATCGTCTTCTTCATCGTCGGCGTTTACTTTGCCATCGCCGGATAAAATGACGATGATGAATCTTCATAGCAATCATGGGTTGGATCAGTCTCCAACAATTTCAGATGTTTCAGATCGGTTTAGACATTCTCCTCTTTCATCATTGCCACTTTCACCAACGCTTCTTTCATCGCCGGAGAGAGATATAATGAGCACTCAACCACCACCACCGCCGCCGCCACAACCTTCTAGGAAGCATTGGGAGATTCCTGACCTTTTAACACCAATTGCTGAATCACCAGCTATTTTGAATCAGACTGCTGTTTCTCAGAGAAAACAATGGGAAATTCCTGTTCTTTCAACACCAATTACACCTTCTAGTAGAGTTTCAGCTCCTCCACCACCACCGCCACCACCACCTCCACTTGCAATGCCAATGAAGCAGCGGAAGCAATGGGAAGTACCTTCTCCAACAACTCCTGTTGGTCAACCGGTGGTTTGTAGGCCGCCAGAATTGAAACCTCCTTCAAGGCCTTTTGTGATGCAAACTCCTCCAAATACATTGGTTTCTCCAGTTGAGTTGCCACCTAGTTTTGAGGCGAATGAAGAGGTTTCTAAACCAAAGTTGAAGCCTTTGCATTGGGATAAAGTGAGGGCCAGTTCCGATCGTGAAATGGTTTGGGATCATTTGAGGTCCAGCTCTTTTAAGTTGAATGAGGAGATGATAGAAACATTATTTGTGGTGAATACACCAAATCCAAAACCAAAGGATGCTACTCCACGTTCAGTTCTTACACCTCCAAGTCACGAGGATAGGGTATTGGATCCGAAAAAGTCTCAAAATATTGCTATCTTGCTTCGAGCGGTTAATGTTACGGTAGAGGAAGTGTGTGAAGCACTGTTGGAAGGTGTTACTGATACACTTGGAACTGAACTACTTGAAAGCTTATTAAAAATGGCGCCAAGCAAGGAAGAAGAGCGCAAATTGAAGGAACATAAAGACGACTCTCCAAACAAACTCGGTTCTGCTGAGAAATTTTTGAAGGCAGTTCTCGATGTACCTTTTGCATTTAAAAGGGTGGAAGCTATGCTTTACATAGCCAATTTTGAATCTGAAGTGGAGTATATTCGTAAATCCTTTCAGACTCTAGAGGTTGCATGTGAAGAGCTGCGAAACAGTAGAATGTTCTTGAAGCTTCTAGAGGCCGTGCTCAAAACTGGGAACCGCATGAATGTTGGAACAAACCGAGGTGATGCGCATGCATTCAAGCTCGATACACTTCTCAAGCTGGTTGACGTTAAAGGTGCAGATGGTAAAACAACTCTTCTACACTTTGTTGTACAAGAAATCATTAGAACAGAAGGAGCTCGTCATTCAGATACTTCTACTAATCAAACACCGAGCGCAACATTGAGTGACGATGCCAAGTGCAGAAGACTTGGTCTTCAAGTAGTATCTAGTCTAAGTTCTGATCTAGCGAATGTGAAGAAGGCCGCGACAATGGACTCCGAAGTCCTCACGAGCGAAGTCTCTAAACTTTCAAAAGGAATCACACACATCGCCGAGATTGTAAAATTGAATCAAACTGCGGGATCAGATGAAACCGTTCGTAAATTCGCAGAATCAATGAACAAGTTTATGAGGATGGCTGAGGAGGAGATTTTAAGAATTCAAGCACAAGAAAGTGTTGCTTTATCACTTGTGAAAGAGATCACAGAGTATTTTCATGGTAACTTATCTAAAGAAGAAGCTCATCCATTTAGAATCTTCATGGTAGTAAGAGACTTCTTAACAGTTCTTGATAGGGTATGCAAAGAAGTTGGTAATATAAATGAAAGGACCATGATTAGTTCTGCTCATAGATTTCCTGTTCCAGTGAACCCTATGCTTCCACAACCACTTCCTGGATTACATGGAAAGAGACATTACAGTTCCTCGGATGATGATAGTTCATCTCCTTAG
Protein sequence

>Msa1317260

MCYHSFFFFLCILIFFKPISSNEPRRFLHQPFPQNNNLSPSQPPSPSPPSSPPPSPNPKYPFSTTPPNTSSSSSTPPFFPTYPSTPPPPSPSSFASFPANISSLTIPQTQKTKSSSSKLLAVAITAVIAAVAVVAISAFIYCRRSRSKRFLADDKTLRSDSSIRLFPRDGGVPTIAKSRNVSSTSSEFLYLGTIANSRSDELPDPRGAGGGGRNPRKMDSPELQPLPPLMRQGSMFDEGNGGANVTGGEDDEEEFYSPRGSLNGNGSGSRRVFAGISAENLVGRSSSESTSSSSSYSSSSASPDRSHSISLSPPVSLSPRRSQPKSPENVVTPAPTQPLLVSEVGRSSLSSSRASSNRHVQSCSSMSSSPEKTFAGECKSPSLSPLNLSPTKNLDGSFVKVEKTQSCNEDGSSSPRLSNASSGKSSSSSSSAFTLPSPDKMTMMNLHSNHGLDQSPTISDVSDRFRHSPLSSLPLSPTLLSSPERDIMSTQPPPPPPPQPSRKHWEIPDLLTPIAESPAILNQTAVSQRKQWEIPVLSTPITPSSRVSAPPPPPPPPPPLAMPMKQRKQWEVPSPTTPVGQPVVCRPPELKPPSRPFVMQTPPNTLVSPVELPPSFEANEEVSKPKLKPLHWDKVRASSDREMVWDHLRSSSFKLNEEMIETLFVVNTPNPKPKDATPRSVLTPPSHEDRVLDPKKSQNIAILLRAVNVTVEEVCEALLEGVTDTLGTELLESLLKMAPSKEEERKLKEHKDDSPNKLGSAEKFLKAVLDVPFAFKRVEAMLYIANFESEVEYIRKSFQTLEVACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRTEGARHSDTSTNQTPSATLSDDAKCRRLGLQVVSSLSSDLANVKKAATMDSEVLTSEVSKLSKGITHIAEIVKLNQTAGSDETVRKFAESMNKFMRMAEEEILRIQAQESVALSLVKEITEYFHGNLSKEEAHPFRIFMVVRDFLTVLDRVCKEVGNINERTMISSAHRFPVPVNPMLPQPLPGLHGKRHYSSSDDDSSSP*