Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0188330 | XP_003592963.1 | 91.555 | 521 | 10 | 10 | 1 | 521 | 1 | 487 | 0.0 | 918 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0188330 | sp|Q9C518|TCP8_ARATH | 46.714 | 426 | 129 | 17 | 77 | 478 | 13 | 364 | 1.52e-79 | 257 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0188330 | G7INN6 | 91.555 | 521 | 10 | 10 | 1 | 521 | 1 | 487 | 0.0 | 918 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0188330 | TF | TCP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0188330 | Msa0270590 | 0.887284 | 1.633926e-72 | -8.615850e-47 |
| Msa0188330 | Msa0308950 | 0.962466 | 6.546359e-121 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0188330 | MtrunA17_Chr2g0277361 | 93.978 | 465 | 7 | 9 | 1 | 465 | 1 | 444 | 0.0 | 847 |
| Msa0188330 | MtrunA17_Chr5g0416581 | 92.045 | 88 | 6 | 1 | 131 | 217 | 61 | 148 | 1.86e-49 | 174 |
| Msa0188330 | MtrunA17_Chr4g0060601 | 65.909 | 132 | 33 | 4 | 77 | 205 | 44 | 166 | 6.73e-44 | 160 |
| Msa0188330 | MtrunA17_Chr7g0224581 | 52.632 | 152 | 62 | 3 | 108 | 255 | 21 | 166 | 2.82e-38 | 141 |
| Msa0188330 | MtrunA17_Chr1g0211941 | 80.488 | 82 | 13 | 1 | 127 | 208 | 27 | 105 | 5.08e-38 | 140 |
| Msa0188330 | MtrunA17_Chr1g0204001 | 56.303 | 119 | 48 | 1 | 106 | 224 | 38 | 152 | 1.05e-36 | 139 |
| Msa0188330 | MtrunA17_Chr1g0164881 | 75.000 | 84 | 18 | 1 | 121 | 204 | 20 | 100 | 1.12e-35 | 133 |
| Msa0188330 | MtrunA17_Chr8g0350941 | 78.947 | 76 | 16 | 0 | 133 | 208 | 77 | 152 | 1.93e-35 | 135 |
| Msa0188330 | MtrunA17_Chr1g0180911 | 80.282 | 71 | 14 | 0 | 128 | 198 | 41 | 111 | 7.65e-35 | 130 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0188330 | AT1G58100.1 | 46.714 | 426 | 129 | 17 | 77 | 478 | 13 | 364 | 1.54e-80 | 257 |
| Msa0188330 | AT1G35560.1 | 42.899 | 338 | 94 | 10 | 133 | 464 | 52 | 296 | 3.62e-59 | 199 |
| Msa0188330 | AT1G58100.2 | 41.549 | 426 | 127 | 19 | 77 | 478 | 13 | 340 | 6.26e-57 | 194 |
| Msa0188330 | AT1G72010.1 | 40.604 | 298 | 104 | 10 | 125 | 399 | 52 | 299 | 4.37e-48 | 171 |
| Msa0188330 | AT1G69690.1 | 58.599 | 157 | 38 | 3 | 131 | 275 | 46 | 187 | 1.39e-41 | 152 |
| Msa0188330 | AT5G23280.1 | 77.108 | 83 | 16 | 1 | 126 | 208 | 32 | 111 | 5.22e-37 | 137 |
| Msa0188330 | AT2G45680.1 | 57.600 | 125 | 41 | 3 | 90 | 213 | 39 | 152 | 5.14e-36 | 137 |
| Msa0188330 | AT5G08330.1 | 68.750 | 96 | 27 | 1 | 111 | 206 | 9 | 101 | 1.05e-35 | 133 |
| Msa0188330 | AT3G27010.2 | 53.600 | 125 | 42 | 2 | 73 | 197 | 31 | 139 | 8.54e-35 | 133 |
| Msa0188330 | AT3G27010.1 | 53.600 | 125 | 42 | 2 | 73 | 197 | 31 | 139 | 8.54e-35 | 133 |
| Msa0188330 | AT5G51910.1 | 78.205 | 78 | 16 | 1 | 132 | 208 | 52 | 129 | 8.50e-34 | 130 |
| Msa0188330 | AT5G51910.2 | 78.205 | 78 | 16 | 1 | 132 | 208 | 52 | 129 | 8.50e-34 | 130 |
| Msa0188330 | AT2G37000.1 | 80.000 | 60 | 12 | 0 | 136 | 195 | 43 | 102 | 3.41e-27 | 108 |
| Msa0188330 | AT5G41030.1 | 51.546 | 97 | 35 | 1 | 133 | 229 | 65 | 149 | 1.54e-26 | 108 |
| Msa0188330 | AT3G45150.1 | 61.905 | 63 | 24 | 0 | 133 | 195 | 14 | 76 | 1.24e-21 | 92.4 |
Find 150 sgRNAs with CRISPR-Local
Find 328 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGCCATCACCTTTCATTA+TGG | 0.235639 | 2_1:-3518540 | Msa0188330:CDS |
| CTTGTTGTTGGTGGTGGGGA+TGG | 0.241546 | 2_1:+3518618 | None:intergenic |
| AGGTTCAATGTTCCAGCTTC+TGG | 0.242129 | 2_1:-3517414 | Msa0188330:CDS |
| GTTTGAAGAAGGTTGAATAT+TGG | 0.260266 | 2_1:+3518508 | None:intergenic |
| TTGAAGAAAATGGTTGAATT+TGG | 0.273936 | 2_1:+3518339 | None:intergenic |
| TCACCAACAACAGGATGATA+TGG | 0.275830 | 2_1:-3517730 | Msa0188330:CDS |
| TTGTTGTTGGTGGTGGGGAT+GGG | 0.292871 | 2_1:+3518619 | None:intergenic |
| TTCCAGTTGACCAGAGAATT+AGG | 0.308053 | 2_1:-3518197 | Msa0188330:CDS |
| GATAGTCATTGTGAGGTATT+AGG | 0.316778 | 2_1:+3517129 | None:intergenic |
| GACGGTGGTGGAGGAGGTGG+TGG | 0.325996 | 2_1:-3517699 | Msa0188330:CDS |
| AATTTGGTTGTTGTTGTTGT+TGG | 0.326907 | 2_1:+3518355 | None:intergenic |
| GACTGAACATGAGGTGTAAA+AGG | 0.331793 | 2_1:+3517492 | None:intergenic |
| ATGATTCTTGTTGTTGGTGG+TGG | 0.333014 | 2_1:+3518612 | None:intergenic |
| CGGGGAGTGGAAGTACAATT+TGG | 0.342926 | 2_1:-3517587 | Msa0188330:CDS |
| TCTTCTCCACTCTCATCATT+AGG | 0.347346 | 2_1:+3517156 | None:intergenic |
| TGTTGTTGGTGGTGGGGATG+GGG | 0.348885 | 2_1:+3518620 | None:intergenic |
| CGCCCATATCATCCTGTTGT+TGG | 0.355044 | 2_1:+3517727 | None:intergenic |
| AGGCCATCACCTTTCATTAT+GGG | 0.359459 | 2_1:-3518539 | Msa0188330:CDS |
| GTGGGGATGGGGATGAATAT+TGG | 0.363141 | 2_1:+3518631 | None:intergenic |
| GAAGGTGACGGTGGTGGAGG+AGG | 0.367290 | 2_1:-3517705 | Msa0188330:CDS |
| GGCTGGGATTGTTCCGGTGC+CGG | 0.367521 | 2_1:+3518106 | None:intergenic |
| CTGTCCTTGGTGGATCGTTT+TGG | 0.369093 | 2_1:+3518284 | None:intergenic |
| TACCAACACGCTCCTCTGTT+AGG | 0.370083 | 2_1:-3517954 | Msa0188330:CDS |
| GTTGTTGCTGTTGCTGTTGT+TGG | 0.372670 | 2_1:+3517910 | None:intergenic |
| TGGACGTGGTGGTTTACAAT+TGG | 0.382459 | 2_1:-3517361 | Msa0188330:CDS |
| TGATTCTTGTTGTTGGTGGT+GGG | 0.388715 | 2_1:+3518613 | None:intergenic |
| GTATCAACCATCACAGCATT+TGG | 0.390115 | 2_1:-3517331 | Msa0188330:CDS |
| GCGGTTGAAGTTGAAGAAAA+TGG | 0.393103 | 2_1:+3518329 | None:intergenic |
| GGCCTAATTCTCTGGTCAAC+TGG | 0.396838 | 2_1:+3518195 | None:intergenic |
| GTAGCCCACATGGCTGTTGC+CGG | 0.398412 | 2_1:+3517612 | None:intergenic |
| GGATTTGTGGCCTAATTCTC+TGG | 0.401966 | 2_1:+3518187 | None:intergenic |
| GATTCTTGTTGTTGGTGGTG+GGG | 0.404293 | 2_1:+3518614 | None:intergenic |
| GGTGGTGGAGGAGGTGGTGG+TGG | 0.404546 | 2_1:-3517696 | Msa0188330:CDS |
| GTGAGGATGATTCTTGTTGT+TGG | 0.411900 | 2_1:+3518606 | None:intergenic |
| TTGTTTCACCATCGGATTTG+TGG | 0.412133 | 2_1:+3518174 | None:intergenic |
| CCACTCTCATCATTAGGTTG+AGG | 0.418843 | 2_1:+3517162 | None:intergenic |
| GGTGACGGTGGTGGAGGAGG+TGG | 0.419720 | 2_1:-3517702 | Msa0188330:CDS |
| TATCAACCATCACAGCATTT+GGG | 0.420346 | 2_1:-3517330 | Msa0188330:CDS |
| GGACGTGGTGGTTTACAATT+GGG | 0.421245 | 2_1:-3517360 | Msa0188330:CDS |
| TCAACAACATTCAATGTCAT+TGG | 0.422221 | 2_1:-3517205 | Msa0188330:CDS |
| TTGTTGTTGTTGGATACATC+TGG | 0.423257 | 2_1:+3518365 | None:intergenic |
| GACGTTGAGCGTTGAGAAAT+TGG | 0.424642 | 2_1:+3518085 | None:intergenic |
| CCAGCTTCTGGTGGTGGTGG+TGG | 0.427315 | 2_1:-3517402 | Msa0188330:CDS |
| AAGAGTTGTTAACGTTGAAA+TGG | 0.427409 | 2_1:+3517244 | None:intergenic |
| GAGGGAGAAGAGTTTGAAGA+AGG | 0.435751 | 2_1:+3518497 | None:intergenic |
| GGTGGTGGTGTTGAATTTCA+AGG | 0.437658 | 2_1:-3517384 | Msa0188330:CDS |
| CAGATCTGGTGGCAATTGCC+AGG | 0.437859 | 2_1:+3518399 | None:intergenic |
| TCATCATTAGGTTGAGGTTG+AGG | 0.438959 | 2_1:+3517168 | None:intergenic |
| CTGATGAACGCTGATCAAAT+TGG | 0.440741 | 2_1:-3517885 | Msa0188330:CDS |
| GGGATGGGGATGAATATTGG+TGG | 0.440791 | 2_1:+3518634 | None:intergenic |
| GAAATTGGCTGGGATTGTTC+CGG | 0.446496 | 2_1:+3518100 | None:intergenic |
| GGCGAAGGTGACGGTGGTGG+AGG | 0.448389 | 2_1:-3517708 | Msa0188330:CDS |
| GGCTGTATCTGATTCCAACT+TGG | 0.449042 | 2_1:-3517304 | Msa0188330:CDS |
| ACAGCCATGTGGGCTACAGC+GGG | 0.455998 | 2_1:-3517606 | Msa0188330:CDS |
| GGAGCTTCTTCTTCTTCTGT+AGG | 0.458812 | 2_1:-3517675 | Msa0188330:CDS |
| ACCAACACGCTCCTCTGTTA+GGG | 0.462020 | 2_1:-3517953 | Msa0188330:CDS |
| GGTGATGGCCTTCCATCAAA+AGG | 0.462353 | 2_1:+3518551 | None:intergenic |
| AATGTTCCAGCTTCTGGTGG+TGG | 0.463360 | 2_1:-3517408 | Msa0188330:CDS |
| CTCAGTTACATTTCATGCCA+AGG | 0.466286 | 2_1:-3517434 | Msa0188330:CDS |
| CAAAACAAATCACCAACAAC+AGG | 0.468328 | 2_1:-3517739 | Msa0188330:CDS |
| CCATTCAATTGTTTCACCAT+CGG | 0.476071 | 2_1:+3518166 | None:intergenic |
| TTGAGCGTTGAGAAATTGGC+TGG | 0.476634 | 2_1:+3518089 | None:intergenic |
| ACACCTCATTGATGCTTCCC+TGG | 0.479655 | 2_1:-3518417 | Msa0188330:CDS |
| GCTTCTTCAACAAGCGGAGC+CGG | 0.481221 | 2_1:-3518144 | Msa0188330:CDS |
| TCGACCGTCAAATATGTTAC+CGG | 0.485929 | 2_1:-3517631 | Msa0188330:CDS |
| ATCATCGCTGCCACCGGCAC+CGG | 0.486326 | 2_1:-3518119 | Msa0188330:CDS |
| ATGGGCGAAGGTGACGGTGG+TGG | 0.487166 | 2_1:-3517711 | Msa0188330:CDS |
| AGGATGATTCTTGTTGTTGG+TGG | 0.493938 | 2_1:+3518609 | None:intergenic |
| ATGTGGGCTACAGCGGGGAG+TGG | 0.494234 | 2_1:-3517600 | Msa0188330:CDS |
| GCTGTATCTGATTCCAACTT+GGG | 0.503244 | 2_1:-3517303 | Msa0188330:CDS |
| AGGATTTGCAACCGCGGTGA+CGG | 0.503756 | 2_1:+3518307 | None:intergenic |
| ACGAGAATTACATGAGAAAA+CGG | 0.506668 | 2_1:-3517848 | Msa0188330:CDS |
| CTTAATGCTTATACAAGAGC+TGG | 0.507717 | 2_1:-3517267 | Msa0188330:CDS |
| CATGTTCAGTCTCAAAATCA+AGG | 0.508213 | 2_1:-3517480 | Msa0188330:CDS |
| AGCAGCAAACATACCCAAGT+TGG | 0.510675 | 2_1:+3517290 | None:intergenic |
| ACCATCACAGCATTTGGGAT+TGG | 0.511721 | 2_1:-3517325 | Msa0188330:CDS |
| GTTCCAGCTTCTGGTGGTGG+TGG | 0.513092 | 2_1:-3517405 | Msa0188330:CDS |
| CCGGCGATCATCGCTGCCAC+CGG | 0.513461 | 2_1:-3518125 | Msa0188330:CDS |
| CAAAAGTTGACGGCCGTGGC+CGG | 0.517328 | 2_1:-3518256 | Msa0188330:CDS |
| CCGGTGGCAGCGATGATCGC+CGG | 0.518014 | 2_1:+3518125 | None:intergenic |
| CAAAATGAAAGTGGCGGTGA+TGG | 0.520198 | 2_1:-3517789 | Msa0188330:CDS |
| GTTGCTGTTGCTGTTGTTGG+TGG | 0.522829 | 2_1:+3517913 | None:intergenic |
| TGGTACGCAGCTTCTTCGTA+AGG | 0.525067 | 2_1:+3517972 | None:intergenic |
| TTCAATGTTCCAGCTTCTGG+TGG | 0.527514 | 2_1:-3517411 | Msa0188330:CDS |
| CACCAACAACAGGATGATAT+GGG | 0.530307 | 2_1:-3517729 | Msa0188330:CDS |
| CCGATGGTGAAACAATTGAA+TGG | 0.532182 | 2_1:-3518166 | Msa0188330:CDS |
| GCATTCGAATTCTCCGGCCA+CGG | 0.535337 | 2_1:+3518243 | None:intergenic |
| TGCTGATGATGAGAATTTGA+AGG | 0.536098 | 2_1:+3518584 | None:intergenic |
| TCGCCGGCATTCGAATTCTC+CGG | 0.537835 | 2_1:+3518237 | None:intergenic |
| AACAACAATCAAAATGAAAG+TGG | 0.537872 | 2_1:-3517798 | Msa0188330:CDS |
| CACACAAAAGTTGACGGCCG+TGG | 0.538934 | 2_1:-3518260 | Msa0188330:CDS |
| TGGAAGAGGAGGTTCAGATC+TGG | 0.540562 | 2_1:+3518385 | None:intergenic |
| TGTTGTTGGTGGTGTTGATG+AGG | 0.542903 | 2_1:+3517924 | None:intergenic |
| ACAGTGTAGAGCCGCTGCTA+CGG | 0.544103 | 2_1:+3518057 | None:intergenic |
| AGAAGGTTGAATATTGGAGA+TGG | 0.548864 | 2_1:+3518514 | None:intergenic |
| GACAGGCACACAAAAGTTGA+CGG | 0.553080 | 2_1:-3518266 | Msa0188330:CDS |
| TTGTTGGATACATCTGGAAG+AGG | 0.554700 | 2_1:+3518371 | None:intergenic |
| ACTCCCCGCTGTAGCCCACA+TGG | 0.560090 | 2_1:+3517602 | None:intergenic |
| GTGATGGCCTTCCATCAAAA+GGG | 0.560570 | 2_1:+3518552 | None:intergenic |
| AACAGCCATGTGGGCTACAG+CGG | 0.560758 | 2_1:-3517607 | Msa0188330:CDS |
| GTTGCCGGTAACATATTTGA+CGG | 0.564703 | 2_1:+3517627 | None:intergenic |
| CAAAACGATCCACCAAGGAC+AGG | 0.572544 | 2_1:-3518283 | Msa0188330:CDS |
| GATGATATGGGCGAAGGTGA+CGG | 0.576236 | 2_1:-3517717 | Msa0188330:CDS |
| TGGGATTGTTCCGGTGCCGG+TGG | 0.577716 | 2_1:+3518109 | None:intergenic |
| ATTTGCAACCGCGGTGACGG+CGG | 0.577827 | 2_1:+3518310 | None:intergenic |
| GTTGAATTTCAAGGTGGACG+TGG | 0.582295 | 2_1:-3517375 | Msa0188330:CDS |
| ACTCTTGCTGCACATGTCGC+CGG | 0.582995 | 2_1:+3518221 | None:intergenic |
| GTTGCAGCACCACCACTCAC+TGG | 0.588807 | 2_1:+3517558 | None:intergenic |
| TTCTCATCATCAGCAGCTTG+TGG | 0.593589 | 2_1:-3518576 | Msa0188330:CDS |
| TGGCCGGAGAATTCGAATGC+CGG | 0.599117 | 2_1:-3518240 | Msa0188330:CDS |
| GAGATGGAGCCCATAATGAA+AGG | 0.601517 | 2_1:+3518530 | None:intergenic |
| GAGCCCATAATGAAAGGTGA+TGG | 0.605278 | 2_1:+3518536 | None:intergenic |
| TTGGATACATCTGGAAGAGG+AGG | 0.605386 | 2_1:+3518374 | None:intergenic |
| TGAATGGCTTCTTCAACAAG+CGG | 0.607294 | 2_1:-3518150 | Msa0188330:CDS |
| ATGATGAGAATTTGAAGGTG+AGG | 0.608155 | 2_1:+3518589 | None:intergenic |
| GGCATGAAATGTAACTGAGA+GGG | 0.612083 | 2_1:+3517438 | None:intergenic |
| GCCAATCCCAAATGCTGTGA+TGG | 0.613902 | 2_1:+3517324 | None:intergenic |
| GAAGCTGGAACATTGAACCT+TGG | 0.618817 | 2_1:+3517417 | None:intergenic |
| GAGTGGAAGTACAATTTGGA+TGG | 0.623430 | 2_1:-3517583 | Msa0188330:CDS |
| CAAAACAACAAGCAGAAGAG+AGG | 0.623869 | 2_1:-3518659 | Msa0188330:CDS |
| GATATGGGCGAAGGTGACGG+TGG | 0.625298 | 2_1:-3517714 | Msa0188330:CDS |
| AGATCTGGTGGCAATTGCCA+GGG | 0.625421 | 2_1:+3518400 | None:intergenic |
| CCTCAACCTAATGATGAGAG+TGG | 0.625980 | 2_1:-3517162 | Msa0188330:CDS |
| CAACAGGATGATATGGGCGA+AGG | 0.628122 | 2_1:-3517723 | Msa0188330:CDS |
| AACTTCAACCGCCGTCACCG+CGG | 0.629301 | 2_1:-3518318 | Msa0188330:CDS |
| GAAAGTGGCGGTGATGGTGA+TGG | 0.632003 | 2_1:-3517783 | Msa0188330:CDS |
| AAGAGGAGGTTCAGATCTGG+TGG | 0.633145 | 2_1:+3518388 | None:intergenic |
| AACGTCTCACTCCGTAGCAG+CGG | 0.639266 | 2_1:-3518068 | Msa0188330:CDS |
| ACCCTAACAGAGGAGCGTGT+TGG | 0.640297 | 2_1:+3517952 | None:intergenic |
| TGAGCGTTGAGAAATTGGCT+GGG | 0.640396 | 2_1:+3518090 | None:intergenic |
| GAATTAGGCCACAAATCCGA+TGG | 0.643115 | 2_1:-3518182 | Msa0188330:CDS |
| AGCATCAATGAGGTGTTGAG+TGG | 0.643841 | 2_1:+3518424 | None:intergenic |
| CTGAGAGGAGCTGATTTCGA+CGG | 0.644392 | 2_1:+3518026 | None:intergenic |
| AACAATCAAAATGAAAGTGG+CGG | 0.649002 | 2_1:-3517795 | Msa0188330:CDS |
| GCATCAATGAGGTGTTGAGT+GGG | 0.650961 | 2_1:+3518425 | None:intergenic |
| GTTACCGGCAACAGCCATGT+GGG | 0.654057 | 2_1:-3517616 | Msa0188330:CDS |
| TGTTACCGGCAACAGCCATG+TGG | 0.658913 | 2_1:-3517617 | Msa0188330:CDS |
| GGTAGTAGATAGTCATTGTG+AGG | 0.659915 | 2_1:+3517122 | None:intergenic |
| GAATTTCAAGGTGGACGTGG+TGG | 0.660159 | 2_1:-3517372 | Msa0188330:CDS |
| TGGCATGAAATGTAACTGAG+AGG | 0.665182 | 2_1:+3517437 | None:intergenic |
| TCCTCCAAAACGATCCACCA+AGG | 0.665860 | 2_1:-3518288 | Msa0188330:CDS |
| CAGCCATGTGGGCTACAGCG+GGG | 0.667527 | 2_1:-3517605 | Msa0188330:CDS |
| AGAGGAGCTGATTTCGACGG+CGG | 0.670392 | 2_1:+3518029 | None:intergenic |
| AGACACAGACACAAAACATG+TGG | 0.683636 | 2_1:-3517515 | Msa0188330:CDS |
| TTGCCAGGGAAGCATCAATG+AGG | 0.690178 | 2_1:+3518414 | None:intergenic |
| ATTTGGATGGTACCAGTGAG+TGG | 0.695345 | 2_1:-3517570 | Msa0188330:CDS |
| TGAGGATGAAACCCTAACAG+AGG | 0.710378 | 2_1:+3517942 | None:intergenic |
| TGGATGGTACCAGTGAGTGG+TGG | 0.715883 | 2_1:-3517567 | Msa0188330:CDS |
| AGCGCGCTATGAAAACTGAG+AGG | 0.721312 | 2_1:+3518011 | None:intergenic |
| GGTGGTGTTGAATTTCAAGG+TGG | 0.744371 | 2_1:-3517381 | Msa0188330:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGATTTGTTTTGAAACTTTT+GGG | + | chr2_1:3518064-3518083 | None:intergenic | 20.0% |
| !!! | TGATTTGTTTTGAAACTTTT+GGG | + | chr2_1:3518064-3518083 | None:intergenic | 20.0% |
| ! | TTGAAGAAAATGGTTGAATT+TGG | + | chr2_1:3517475-3517494 | None:intergenic | 25.0% |
| ! | AACAACAATCAAAATGAAAG+TGG | - | chr2_1:3518013-3518032 | Msa0188330:CDS | 25.0% |
| !!! | GTGATTTGTTTTGAAACTTT+TGG | + | chr2_1:3518065-3518084 | None:intergenic | 25.0% |
| ! | TTGAAGAAAATGGTTGAATT+TGG | + | chr2_1:3517475-3517494 | None:intergenic | 25.0% |
| ! | AACAACAATCAAAATGAAAG+TGG | - | chr2_1:3518013-3518032 | Msa0188330:CDS | 25.0% |
| !!! | GTGATTTGTTTTGAAACTTT+TGG | + | chr2_1:3518065-3518084 | None:intergenic | 25.0% |
| GTTTGAAGAAGGTTGAATAT+TGG | + | chr2_1:3517306-3517325 | None:intergenic | 30.0% | |
| TGAAGAAGAAGAAGAAGAAT+TGG | + | chr2_1:3517339-3517358 | None:intergenic | 30.0% | |
| ! | AATTTGGTTGTTGTTGTTGT+TGG | + | chr2_1:3517459-3517478 | None:intergenic | 30.0% |
| ACGAGAATTACATGAGAAAA+CGG | - | chr2_1:3517963-3517982 | Msa0188330:CDS | 30.0% | |
| AACAATCAAAATGAAAGTGG+CGG | - | chr2_1:3518016-3518035 | Msa0188330:CDS | 30.0% | |
| ! | TCTGTAGGTAATTCTTTTTC+TGG | - | chr2_1:3518151-3518170 | Msa0188330:CDS | 30.0% |
| AAGAGTTGTTAACGTTGAAA+TGG | + | chr2_1:3518570-3518589 | None:intergenic | 30.0% | |
| TCAACAACATTCAATGTCAT+TGG | - | chr2_1:3518606-3518625 | Msa0188330:CDS | 30.0% | |
| GTTTGAAGAAGGTTGAATAT+TGG | + | chr2_1:3517306-3517325 | None:intergenic | 30.0% | |
| TGAAGAAGAAGAAGAAGAAT+TGG | + | chr2_1:3517339-3517358 | None:intergenic | 30.0% | |
| ! | AATTTGGTTGTTGTTGTTGT+TGG | + | chr2_1:3517459-3517478 | None:intergenic | 30.0% |
| ACGAGAATTACATGAGAAAA+CGG | - | chr2_1:3517963-3517982 | Msa0188330:CDS | 30.0% | |
| AACAATCAAAATGAAAGTGG+CGG | - | chr2_1:3518016-3518035 | Msa0188330:CDS | 30.0% | |
| ! | TCTGTAGGTAATTCTTTTTC+TGG | - | chr2_1:3518151-3518170 | Msa0188330:CDS | 30.0% |
| AAGAGTTGTTAACGTTGAAA+TGG | + | chr2_1:3518570-3518589 | None:intergenic | 30.0% | |
| TCAACAACATTCAATGTCAT+TGG | - | chr2_1:3518606-3518625 | Msa0188330:CDS | 30.0% | |
| ATGATGAGAATTTGAAGGTG+AGG | + | chr2_1:3517225-3517244 | None:intergenic | 35.0% | |
| ! | TGCTGATGATGAGAATTTGA+AGG | + | chr2_1:3517230-3517249 | None:intergenic | 35.0% |
| AGAAGGTTGAATATTGGAGA+TGG | + | chr2_1:3517300-3517319 | None:intergenic | 35.0% | |
| GAAGAAGAAGAAGAATTGGA+GGG | + | chr2_1:3517335-3517354 | None:intergenic | 35.0% | |
| AGAAGAAGAAGAAGAATTGG+AGG | + | chr2_1:3517336-3517355 | None:intergenic | 35.0% | |
| ! | TTGTTGTTGTTGGATACATC+TGG | + | chr2_1:3517449-3517468 | None:intergenic | 35.0% |
| CCATTCAATTGTTTCACCAT+CGG | + | chr2_1:3517648-3517667 | None:intergenic | 35.0% | |
| CAAAACAAATCACCAACAAC+AGG | - | chr2_1:3518072-3518091 | Msa0188330:CDS | 35.0% | |
| !!! | TGATTTTGAGACTGAACATG+AGG | + | chr2_1:3518331-3518350 | None:intergenic | 35.0% |
| CATGTTCAGTCTCAAAATCA+AGG | - | chr2_1:3518331-3518350 | Msa0188330:CDS | 35.0% | |
| TATCAACCATCACAGCATTT+GGG | - | chr2_1:3518481-3518500 | Msa0188330:CDS | 35.0% | |
| CTTAATGCTTATACAAGAGC+TGG | - | chr2_1:3518544-3518563 | Msa0188330:CDS | 35.0% | |
| ATGATGAGAATTTGAAGGTG+AGG | + | chr2_1:3517225-3517244 | None:intergenic | 35.0% | |
| ! | TGCTGATGATGAGAATTTGA+AGG | + | chr2_1:3517230-3517249 | None:intergenic | 35.0% |
| AGAAGGTTGAATATTGGAGA+TGG | + | chr2_1:3517300-3517319 | None:intergenic | 35.0% | |
| GAAGAAGAAGAAGAATTGGA+GGG | + | chr2_1:3517335-3517354 | None:intergenic | 35.0% | |
| AGAAGAAGAAGAAGAATTGG+AGG | + | chr2_1:3517336-3517355 | None:intergenic | 35.0% | |
| ! | TTGTTGTTGTTGGATACATC+TGG | + | chr2_1:3517449-3517468 | None:intergenic | 35.0% |
| CCATTCAATTGTTTCACCAT+CGG | + | chr2_1:3517648-3517667 | None:intergenic | 35.0% | |
| CAAAACAAATCACCAACAAC+AGG | - | chr2_1:3518072-3518091 | Msa0188330:CDS | 35.0% | |
| !!! | TGATTTTGAGACTGAACATG+AGG | + | chr2_1:3518331-3518350 | None:intergenic | 35.0% |
| CATGTTCAGTCTCAAAATCA+AGG | - | chr2_1:3518331-3518350 | Msa0188330:CDS | 35.0% | |
| TATCAACCATCACAGCATTT+GGG | - | chr2_1:3518481-3518500 | Msa0188330:CDS | 35.0% | |
| CTTAATGCTTATACAAGAGC+TGG | - | chr2_1:3518544-3518563 | Msa0188330:CDS | 35.0% | |
| CAAAACAACAAGCAGAAGAG+AGG | - | chr2_1:3517152-3517171 | Msa0188330:CDS | 40.0% | |
| !! | TGATTCTTGTTGTTGGTGGT+GGG | + | chr2_1:3517201-3517220 | None:intergenic | 40.0% |
| !! | ATGATTCTTGTTGTTGGTGG+TGG | + | chr2_1:3517202-3517221 | None:intergenic | 40.0% |
| !! | AGGATGATTCTTGTTGTTGG+TGG | + | chr2_1:3517205-3517224 | None:intergenic | 40.0% |
| ! | GTGAGGATGATTCTTGTTGT+TGG | + | chr2_1:3517208-3517227 | None:intergenic | 40.0% |
| AAGGCCATCACCTTTCATTA+TGG | - | chr2_1:3517271-3517290 | Msa0188330:CDS | 40.0% | |
| AGGCCATCACCTTTCATTAT+GGG | - | chr2_1:3517272-3517291 | Msa0188330:CDS | 40.0% | |
| TTGTTGGATACATCTGGAAG+AGG | + | chr2_1:3517443-3517462 | None:intergenic | 40.0% | |
| GCGGTTGAAGTTGAAGAAAA+TGG | + | chr2_1:3517485-3517504 | None:intergenic | 40.0% | |
| TTCCAGTTGACCAGAGAATT+AGG | - | chr2_1:3517614-3517633 | Msa0188330:CDS | 40.0% | |
| TTGTTTCACCATCGGATTTG+TGG | + | chr2_1:3517640-3517659 | None:intergenic | 40.0% | |
| CCGATGGTGAAACAATTGAA+TGG | - | chr2_1:3517645-3517664 | Msa0188330:CDS | 40.0% | |
| TGAATGGCTTCTTCAACAAG+CGG | - | chr2_1:3517661-3517680 | Msa0188330:CDS | 40.0% | |
| CTGATGAACGCTGATCAAAT+TGG | - | chr2_1:3517926-3517945 | Msa0188330:CDS | 40.0% | |
| TCACCAACAACAGGATGATA+TGG | - | chr2_1:3518081-3518100 | Msa0188330:CDS | 40.0% | |
| CACCAACAACAGGATGATAT+GGG | - | chr2_1:3518082-3518101 | Msa0188330:CDS | 40.0% | |
| TCGACCGTCAAATATGTTAC+CGG | - | chr2_1:3518180-3518199 | Msa0188330:CDS | 40.0% | |
| GTTGCCGGTAACATATTTGA+CGG | + | chr2_1:3518187-3518206 | None:intergenic | 40.0% | |
| ! | GAGTGGAAGTACAATTTGGA+TGG | - | chr2_1:3518228-3518247 | Msa0188330:CDS | 40.0% |
| AGACACAGACACAAAACATG+TGG | - | chr2_1:3518296-3518315 | Msa0188330:CDS | 40.0% | |
| GACTGAACATGAGGTGTAAA+AGG | + | chr2_1:3518322-3518341 | None:intergenic | 40.0% | |
| GGCATGAAATGTAACTGAGA+GGG | + | chr2_1:3518376-3518395 | None:intergenic | 40.0% | |
| TGGCATGAAATGTAACTGAG+AGG | + | chr2_1:3518377-3518396 | None:intergenic | 40.0% | |
| CTCAGTTACATTTCATGCCA+AGG | - | chr2_1:3518377-3518396 | Msa0188330:CDS | 40.0% | |
| GTATCAACCATCACAGCATT+TGG | - | chr2_1:3518480-3518499 | Msa0188330:CDS | 40.0% | |
| GCTGTATCTGATTCCAACTT+GGG | - | chr2_1:3518508-3518527 | Msa0188330:CDS | 40.0% | |
| !! | TCATCATTAGGTTGAGGTTG+AGG | + | chr2_1:3518646-3518665 | None:intergenic | 40.0% |
| TCTTCTCCACTCTCATCATT+AGG | + | chr2_1:3518658-3518677 | None:intergenic | 40.0% | |
| CAAAACAACAAGCAGAAGAG+AGG | - | chr2_1:3517152-3517171 | Msa0188330:CDS | 40.0% | |
| !! | TGATTCTTGTTGTTGGTGGT+GGG | + | chr2_1:3517201-3517220 | None:intergenic | 40.0% |
| !! | ATGATTCTTGTTGTTGGTGG+TGG | + | chr2_1:3517202-3517221 | None:intergenic | 40.0% |
| !! | AGGATGATTCTTGTTGTTGG+TGG | + | chr2_1:3517205-3517224 | None:intergenic | 40.0% |
| ! | GTGAGGATGATTCTTGTTGT+TGG | + | chr2_1:3517208-3517227 | None:intergenic | 40.0% |
| AAGGCCATCACCTTTCATTA+TGG | - | chr2_1:3517271-3517290 | Msa0188330:CDS | 40.0% | |
| AGGCCATCACCTTTCATTAT+GGG | - | chr2_1:3517272-3517291 | Msa0188330:CDS | 40.0% | |
| TTGTTGGATACATCTGGAAG+AGG | + | chr2_1:3517443-3517462 | None:intergenic | 40.0% | |
| GCGGTTGAAGTTGAAGAAAA+TGG | + | chr2_1:3517485-3517504 | None:intergenic | 40.0% | |
| TTCCAGTTGACCAGAGAATT+AGG | - | chr2_1:3517614-3517633 | Msa0188330:CDS | 40.0% | |
| TTGTTTCACCATCGGATTTG+TGG | + | chr2_1:3517640-3517659 | None:intergenic | 40.0% | |
| CCGATGGTGAAACAATTGAA+TGG | - | chr2_1:3517645-3517664 | Msa0188330:CDS | 40.0% | |
| TGAATGGCTTCTTCAACAAG+CGG | - | chr2_1:3517661-3517680 | Msa0188330:CDS | 40.0% | |
| CTGATGAACGCTGATCAAAT+TGG | - | chr2_1:3517926-3517945 | Msa0188330:CDS | 40.0% | |
| TCACCAACAACAGGATGATA+TGG | - | chr2_1:3518081-3518100 | Msa0188330:CDS | 40.0% | |
| CACCAACAACAGGATGATAT+GGG | - | chr2_1:3518082-3518101 | Msa0188330:CDS | 40.0% | |
| TCGACCGTCAAATATGTTAC+CGG | - | chr2_1:3518180-3518199 | Msa0188330:CDS | 40.0% | |
| GTTGCCGGTAACATATTTGA+CGG | + | chr2_1:3518187-3518206 | None:intergenic | 40.0% | |
| ! | GAGTGGAAGTACAATTTGGA+TGG | - | chr2_1:3518228-3518247 | Msa0188330:CDS | 40.0% |
| AGACACAGACACAAAACATG+TGG | - | chr2_1:3518296-3518315 | Msa0188330:CDS | 40.0% | |
| GACTGAACATGAGGTGTAAA+AGG | + | chr2_1:3518322-3518341 | None:intergenic | 40.0% | |
| GGCATGAAATGTAACTGAGA+GGG | + | chr2_1:3518376-3518395 | None:intergenic | 40.0% | |
| TGGCATGAAATGTAACTGAG+AGG | + | chr2_1:3518377-3518396 | None:intergenic | 40.0% | |
| CTCAGTTACATTTCATGCCA+AGG | - | chr2_1:3518377-3518396 | Msa0188330:CDS | 40.0% | |
| GTATCAACCATCACAGCATT+TGG | - | chr2_1:3518480-3518499 | Msa0188330:CDS | 40.0% | |
| GCTGTATCTGATTCCAACTT+GGG | - | chr2_1:3518508-3518527 | Msa0188330:CDS | 40.0% | |
| !! | TCATCATTAGGTTGAGGTTG+AGG | + | chr2_1:3518646-3518665 | None:intergenic | 40.0% |
| TCTTCTCCACTCTCATCATT+AGG | + | chr2_1:3518658-3518677 | None:intergenic | 40.0% | |
| !! | GATTCTTGTTGTTGGTGGTG+GGG | + | chr2_1:3517200-3517219 | None:intergenic | 45.0% |
| TTCTCATCATCAGCAGCTTG+TGG | - | chr2_1:3517235-3517254 | Msa0188330:CDS | 45.0% | |
| ! | TTGTGGTCCCTTTTGATGGA+AGG | - | chr2_1:3517252-3517271 | Msa0188330:CDS | 45.0% |
| GTGATGGCCTTCCATCAAAA+GGG | + | chr2_1:3517262-3517281 | None:intergenic | 45.0% | |
| GAGCCCATAATGAAAGGTGA+TGG | + | chr2_1:3517278-3517297 | None:intergenic | 45.0% | |
| GAGATGGAGCCCATAATGAA+AGG | + | chr2_1:3517284-3517303 | None:intergenic | 45.0% | |
| GAGGGAGAAGAGTTTGAAGA+AGG | + | chr2_1:3517317-3517336 | None:intergenic | 45.0% | |
| !! | GCATCAATGAGGTGTTGAGT+GGG | + | chr2_1:3517389-3517408 | None:intergenic | 45.0% |
| !! | AGCATCAATGAGGTGTTGAG+TGG | + | chr2_1:3517390-3517409 | None:intergenic | 45.0% |
| TTGGATACATCTGGAAGAGG+AGG | + | chr2_1:3517440-3517459 | None:intergenic | 45.0% | |
| !! | TTTTGGAGGATTTGCAACCG+CGG | + | chr2_1:3517513-3517532 | None:intergenic | 45.0% |
| ! | AACTTTTGTGTGCCTGTCCT+TGG | + | chr2_1:3517543-3517562 | None:intergenic | 45.0% |
| GACAGGCACACAAAAGTTGA+CGG | - | chr2_1:3517545-3517564 | Msa0188330:CDS | 45.0% | |
| GGATTTGTGGCCTAATTCTC+TGG | + | chr2_1:3517627-3517646 | None:intergenic | 45.0% | |
| GAATTAGGCCACAAATCCGA+TGG | - | chr2_1:3517629-3517648 | Msa0188330:CDS | 45.0% | |
| GAAATTGGCTGGGATTGTTC+CGG | + | chr2_1:3517714-3517733 | None:intergenic | 45.0% | |
| !! | TGAGCGTTGAGAAATTGGCT+GGG | + | chr2_1:3517724-3517743 | None:intergenic | 45.0% |
| !! | TTGAGCGTTGAGAAATTGGC+TGG | + | chr2_1:3517725-3517744 | None:intergenic | 45.0% |
| !! | GACGTTGAGCGTTGAGAAAT+TGG | + | chr2_1:3517729-3517748 | None:intergenic | 45.0% |
| TGAGGATGAAACCCTAACAG+AGG | + | chr2_1:3517872-3517891 | None:intergenic | 45.0% | |
| !! | TGTTGTTGGTGGTGTTGATG+AGG | + | chr2_1:3517890-3517909 | None:intergenic | 45.0% |
| ! | GTTGTTGCTGTTGCTGTTGT+TGG | + | chr2_1:3517904-3517923 | None:intergenic | 45.0% |
| CAAAATGAAAGTGGCGGTGA+TGG | - | chr2_1:3518022-3518041 | Msa0188330:CDS | 45.0% | |
| GGAGCTTCTTCTTCTTCTGT+AGG | - | chr2_1:3518136-3518155 | Msa0188330:CDS | 45.0% | |
| ATTTGGATGGTACCAGTGAG+TGG | - | chr2_1:3518241-3518260 | Msa0188330:CDS | 45.0% | |
| GAAGCTGGAACATTGAACCT+TGG | + | chr2_1:3518397-3518416 | None:intergenic | 45.0% | |
| AGGTTCAATGTTCCAGCTTC+TGG | - | chr2_1:3518397-3518416 | Msa0188330:CDS | 45.0% | |
| TTCAATGTTCCAGCTTCTGG+TGG | - | chr2_1:3518400-3518419 | Msa0188330:CDS | 45.0% | |
| ! | GGTGGTGGTGTTGAATTTCA+AGG | - | chr2_1:3518427-3518446 | Msa0188330:CDS | 45.0% |
| ! | GGTGGTGTTGAATTTCAAGG+TGG | - | chr2_1:3518430-3518449 | Msa0188330:CDS | 45.0% |
| GTTGAATTTCAAGGTGGACG+TGG | - | chr2_1:3518436-3518455 | Msa0188330:CDS | 45.0% | |
| TGGACGTGGTGGTTTACAAT+TGG | - | chr2_1:3518450-3518469 | Msa0188330:CDS | 45.0% | |
| GGACGTGGTGGTTTACAATT+GGG | - | chr2_1:3518451-3518470 | Msa0188330:CDS | 45.0% | |
| ! | ACCATCACAGCATTTGGGAT+TGG | - | chr2_1:3518486-3518505 | Msa0188330:CDS | 45.0% |
| GGCTGTATCTGATTCCAACT+TGG | - | chr2_1:3518507-3518526 | Msa0188330:CDS | 45.0% | |
| AGCAGCAAACATACCCAAGT+TGG | + | chr2_1:3518524-3518543 | None:intergenic | 45.0% | |
| ! | CCACTCTCATCATTAGGTTG+AGG | + | chr2_1:3518652-3518671 | None:intergenic | 45.0% |
| CCTCAACCTAATGATGAGAG+TGG | - | chr2_1:3518649-3518668 | Msa0188330:CDS | 45.0% | |
| !! | GATTCTTGTTGTTGGTGGTG+GGG | + | chr2_1:3517200-3517219 | None:intergenic | 45.0% |
| TTCTCATCATCAGCAGCTTG+TGG | - | chr2_1:3517235-3517254 | Msa0188330:CDS | 45.0% | |
| ! | TTGTGGTCCCTTTTGATGGA+AGG | - | chr2_1:3517252-3517271 | Msa0188330:CDS | 45.0% |
| GTGATGGCCTTCCATCAAAA+GGG | + | chr2_1:3517262-3517281 | None:intergenic | 45.0% | |
| GAGCCCATAATGAAAGGTGA+TGG | + | chr2_1:3517278-3517297 | None:intergenic | 45.0% | |
| GAGATGGAGCCCATAATGAA+AGG | + | chr2_1:3517284-3517303 | None:intergenic | 45.0% | |
| GAGGGAGAAGAGTTTGAAGA+AGG | + | chr2_1:3517317-3517336 | None:intergenic | 45.0% | |
| !! | GCATCAATGAGGTGTTGAGT+GGG | + | chr2_1:3517389-3517408 | None:intergenic | 45.0% |
| !! | AGCATCAATGAGGTGTTGAG+TGG | + | chr2_1:3517390-3517409 | None:intergenic | 45.0% |
| TTGGATACATCTGGAAGAGG+AGG | + | chr2_1:3517440-3517459 | None:intergenic | 45.0% | |
| !! | TTTTGGAGGATTTGCAACCG+CGG | + | chr2_1:3517513-3517532 | None:intergenic | 45.0% |
| ! | AACTTTTGTGTGCCTGTCCT+TGG | + | chr2_1:3517543-3517562 | None:intergenic | 45.0% |
| GACAGGCACACAAAAGTTGA+CGG | - | chr2_1:3517545-3517564 | Msa0188330:CDS | 45.0% | |
| GGATTTGTGGCCTAATTCTC+TGG | + | chr2_1:3517627-3517646 | None:intergenic | 45.0% | |
| GAATTAGGCCACAAATCCGA+TGG | - | chr2_1:3517629-3517648 | Msa0188330:CDS | 45.0% | |
| GAAATTGGCTGGGATTGTTC+CGG | + | chr2_1:3517714-3517733 | None:intergenic | 45.0% | |
| !! | TGAGCGTTGAGAAATTGGCT+GGG | + | chr2_1:3517724-3517743 | None:intergenic | 45.0% |
| !! | TTGAGCGTTGAGAAATTGGC+TGG | + | chr2_1:3517725-3517744 | None:intergenic | 45.0% |
| !! | GACGTTGAGCGTTGAGAAAT+TGG | + | chr2_1:3517729-3517748 | None:intergenic | 45.0% |
| TGAGGATGAAACCCTAACAG+AGG | + | chr2_1:3517872-3517891 | None:intergenic | 45.0% | |
| !! | TGTTGTTGGTGGTGTTGATG+AGG | + | chr2_1:3517890-3517909 | None:intergenic | 45.0% |
| ! | GTTGTTGCTGTTGCTGTTGT+TGG | + | chr2_1:3517904-3517923 | None:intergenic | 45.0% |
| CAAAATGAAAGTGGCGGTGA+TGG | - | chr2_1:3518022-3518041 | Msa0188330:CDS | 45.0% | |
| GGAGCTTCTTCTTCTTCTGT+AGG | - | chr2_1:3518136-3518155 | Msa0188330:CDS | 45.0% | |
| ATTTGGATGGTACCAGTGAG+TGG | - | chr2_1:3518241-3518260 | Msa0188330:CDS | 45.0% | |
| GAAGCTGGAACATTGAACCT+TGG | + | chr2_1:3518397-3518416 | None:intergenic | 45.0% | |
| AGGTTCAATGTTCCAGCTTC+TGG | - | chr2_1:3518397-3518416 | Msa0188330:CDS | 45.0% | |
| TTCAATGTTCCAGCTTCTGG+TGG | - | chr2_1:3518400-3518419 | Msa0188330:CDS | 45.0% | |
| ! | GGTGGTGGTGTTGAATTTCA+AGG | - | chr2_1:3518427-3518446 | Msa0188330:CDS | 45.0% |
| ! | GGTGGTGTTGAATTTCAAGG+TGG | - | chr2_1:3518430-3518449 | Msa0188330:CDS | 45.0% |
| GTTGAATTTCAAGGTGGACG+TGG | - | chr2_1:3518436-3518455 | Msa0188330:CDS | 45.0% | |
| TGGACGTGGTGGTTTACAAT+TGG | - | chr2_1:3518450-3518469 | Msa0188330:CDS | 45.0% | |
| GGACGTGGTGGTTTACAATT+GGG | - | chr2_1:3518451-3518470 | Msa0188330:CDS | 45.0% | |
| ! | ACCATCACAGCATTTGGGAT+TGG | - | chr2_1:3518486-3518505 | Msa0188330:CDS | 45.0% |
| GGCTGTATCTGATTCCAACT+TGG | - | chr2_1:3518507-3518526 | Msa0188330:CDS | 45.0% | |
| AGCAGCAAACATACCCAAGT+TGG | + | chr2_1:3518524-3518543 | None:intergenic | 45.0% | |
| ! | CCACTCTCATCATTAGGTTG+AGG | + | chr2_1:3518652-3518671 | None:intergenic | 45.0% |
| CCTCAACCTAATGATGAGAG+TGG | - | chr2_1:3518649-3518668 | Msa0188330:CDS | 45.0% | |
| GGGATGGGGATGAATATTGG+TGG | + | chr2_1:3517180-3517199 | None:intergenic | 50.0% | |
| GTGGGGATGGGGATGAATAT+TGG | + | chr2_1:3517183-3517202 | None:intergenic | 50.0% | |
| !! | TTGTTGTTGGTGGTGGGGAT+GGG | + | chr2_1:3517195-3517214 | None:intergenic | 50.0% |
| ! | CAGCTTGTGGTCCCTTTTGA+TGG | - | chr2_1:3517248-3517267 | Msa0188330:CDS | 50.0% |
| ! | GGTGATGGCCTTCCATCAAA+AGG | + | chr2_1:3517263-3517282 | None:intergenic | 50.0% |
| ACACCTCATTGATGCTTCCC+TGG | - | chr2_1:3517394-3517413 | Msa0188330:CDS | 50.0% | |
| !! | TTGCCAGGGAAGCATCAATG+AGG | + | chr2_1:3517400-3517419 | None:intergenic | 50.0% |
| AGATCTGGTGGCAATTGCCA+GGG | + | chr2_1:3517414-3517433 | None:intergenic | 50.0% | |
| AAGAGGAGGTTCAGATCTGG+TGG | + | chr2_1:3517426-3517445 | None:intergenic | 50.0% | |
| TGGAAGAGGAGGTTCAGATC+TGG | + | chr2_1:3517429-3517448 | None:intergenic | 50.0% | |
| TCCTCCAAAACGATCCACCA+AGG | - | chr2_1:3517523-3517542 | Msa0188330:CDS | 50.0% | |
| !! | TCCTTGGTGGATCGTTTTGG+AGG | + | chr2_1:3517527-3517546 | None:intergenic | 50.0% |
| !! | CTGTCCTTGGTGGATCGTTT+TGG | + | chr2_1:3517530-3517549 | None:intergenic | 50.0% |
| CAAAACGATCCACCAAGGAC+AGG | - | chr2_1:3517528-3517547 | Msa0188330:CDS | 50.0% | |
| ! | TTTTGTGTGCCTGTCCTTGG+TGG | + | chr2_1:3517540-3517559 | None:intergenic | 50.0% |
| GGCCTAATTCTCTGGTCAAC+TGG | + | chr2_1:3517619-3517638 | None:intergenic | 50.0% | |
| ! | CTGAGAGGAGCTGATTTCGA+CGG | + | chr2_1:3517788-3517807 | None:intergenic | 50.0% |
| AGCGCGCTATGAAAACTGAG+AGG | + | chr2_1:3517803-3517822 | None:intergenic | 50.0% | |
| ! | TTTTCATAGCGCGCTTGCAC+TGG | - | chr2_1:3517808-3517827 | Msa0188330:CDS | 50.0% |
| TGGTACGCAGCTTCTTCGTA+AGG | + | chr2_1:3517842-3517861 | None:intergenic | 50.0% | |
| TACCAACACGCTCCTCTGTT+AGG | - | chr2_1:3517857-3517876 | Msa0188330:CDS | 50.0% | |
| ACCAACACGCTCCTCTGTTA+GGG | - | chr2_1:3517858-3517877 | Msa0188330:CDS | 50.0% | |
| ! | GTTGCTGTTGCTGTTGTTGG+TGG | + | chr2_1:3517901-3517920 | None:intergenic | 50.0% |
| CGCCCATATCATCCTGTTGT+TGG | + | chr2_1:3518087-3518106 | None:intergenic | 50.0% | |
| CAACAGGATGATATGGGCGA+AGG | - | chr2_1:3518088-3518107 | Msa0188330:CDS | 50.0% | |
| GATGATATGGGCGAAGGTGA+CGG | - | chr2_1:3518094-3518113 | Msa0188330:CDS | 50.0% | |
| ! | CGGGGAGTGGAAGTACAATT+TGG | - | chr2_1:3518224-3518243 | Msa0188330:CDS | 50.0% |
| AATGTTCCAGCTTCTGGTGG+TGG | - | chr2_1:3518403-3518422 | Msa0188330:CDS | 50.0% | |
| GAATTTCAAGGTGGACGTGG+TGG | - | chr2_1:3518439-3518458 | Msa0188330:CDS | 50.0% | |
| GCCAATCCCAAATGCTGTGA+TGG | + | chr2_1:3518490-3518509 | None:intergenic | 50.0% | |
| GGGATGGGGATGAATATTGG+TGG | + | chr2_1:3517180-3517199 | None:intergenic | 50.0% | |
| GTGGGGATGGGGATGAATAT+TGG | + | chr2_1:3517183-3517202 | None:intergenic | 50.0% | |
| !! | TTGTTGTTGGTGGTGGGGAT+GGG | + | chr2_1:3517195-3517214 | None:intergenic | 50.0% |
| ! | CAGCTTGTGGTCCCTTTTGA+TGG | - | chr2_1:3517248-3517267 | Msa0188330:CDS | 50.0% |
| ! | GGTGATGGCCTTCCATCAAA+AGG | + | chr2_1:3517263-3517282 | None:intergenic | 50.0% |
| ACACCTCATTGATGCTTCCC+TGG | - | chr2_1:3517394-3517413 | Msa0188330:CDS | 50.0% | |
| !! | TTGCCAGGGAAGCATCAATG+AGG | + | chr2_1:3517400-3517419 | None:intergenic | 50.0% |
| AGATCTGGTGGCAATTGCCA+GGG | + | chr2_1:3517414-3517433 | None:intergenic | 50.0% | |
| AAGAGGAGGTTCAGATCTGG+TGG | + | chr2_1:3517426-3517445 | None:intergenic | 50.0% | |
| TGGAAGAGGAGGTTCAGATC+TGG | + | chr2_1:3517429-3517448 | None:intergenic | 50.0% | |
| TCCTCCAAAACGATCCACCA+AGG | - | chr2_1:3517523-3517542 | Msa0188330:CDS | 50.0% | |
| !! | TCCTTGGTGGATCGTTTTGG+AGG | + | chr2_1:3517527-3517546 | None:intergenic | 50.0% |
| !! | CTGTCCTTGGTGGATCGTTT+TGG | + | chr2_1:3517530-3517549 | None:intergenic | 50.0% |
| CAAAACGATCCACCAAGGAC+AGG | - | chr2_1:3517528-3517547 | Msa0188330:CDS | 50.0% | |
| ! | TTTTGTGTGCCTGTCCTTGG+TGG | + | chr2_1:3517540-3517559 | None:intergenic | 50.0% |
| GGCCTAATTCTCTGGTCAAC+TGG | + | chr2_1:3517619-3517638 | None:intergenic | 50.0% | |
| ! | CTGAGAGGAGCTGATTTCGA+CGG | + | chr2_1:3517788-3517807 | None:intergenic | 50.0% |
| AGCGCGCTATGAAAACTGAG+AGG | + | chr2_1:3517803-3517822 | None:intergenic | 50.0% | |
| ! | TTTTCATAGCGCGCTTGCAC+TGG | - | chr2_1:3517808-3517827 | Msa0188330:CDS | 50.0% |
| TGGTACGCAGCTTCTTCGTA+AGG | + | chr2_1:3517842-3517861 | None:intergenic | 50.0% | |
| TACCAACACGCTCCTCTGTT+AGG | - | chr2_1:3517857-3517876 | Msa0188330:CDS | 50.0% | |
| ACCAACACGCTCCTCTGTTA+GGG | - | chr2_1:3517858-3517877 | Msa0188330:CDS | 50.0% | |
| ! | GTTGCTGTTGCTGTTGTTGG+TGG | + | chr2_1:3517901-3517920 | None:intergenic | 50.0% |
| CGCCCATATCATCCTGTTGT+TGG | + | chr2_1:3518087-3518106 | None:intergenic | 50.0% | |
| CAACAGGATGATATGGGCGA+AGG | - | chr2_1:3518088-3518107 | Msa0188330:CDS | 50.0% | |
| GATGATATGGGCGAAGGTGA+CGG | - | chr2_1:3518094-3518113 | Msa0188330:CDS | 50.0% | |
| ! | CGGGGAGTGGAAGTACAATT+TGG | - | chr2_1:3518224-3518243 | Msa0188330:CDS | 50.0% |
| AATGTTCCAGCTTCTGGTGG+TGG | - | chr2_1:3518403-3518422 | Msa0188330:CDS | 50.0% | |
| GAATTTCAAGGTGGACGTGG+TGG | - | chr2_1:3518439-3518458 | Msa0188330:CDS | 50.0% | |
| GCCAATCCCAAATGCTGTGA+TGG | + | chr2_1:3518490-3518509 | None:intergenic | 50.0% | |
| !! | TGTTGTTGGTGGTGGGGATG+GGG | + | chr2_1:3517194-3517213 | None:intergenic | 55.0% |
| !! | CTTGTTGTTGGTGGTGGGGA+TGG | + | chr2_1:3517196-3517215 | None:intergenic | 55.0% |
| CAGATCTGGTGGCAATTGCC+AGG | + | chr2_1:3517415-3517434 | None:intergenic | 55.0% | |
| AGGATTTGCAACCGCGGTGA+CGG | + | chr2_1:3517507-3517526 | None:intergenic | 55.0% | |
| CACACAAAAGTTGACGGCCG+TGG | - | chr2_1:3517551-3517570 | Msa0188330:CDS | 55.0% | |
| GCATTCGAATTCTCCGGCCA+CGG | + | chr2_1:3517571-3517590 | None:intergenic | 55.0% | |
| TGGCCGGAGAATTCGAATGC+CGG | - | chr2_1:3517571-3517590 | Msa0188330:CDS | 55.0% | |
| TCGCCGGCATTCGAATTCTC+CGG | + | chr2_1:3517577-3517596 | None:intergenic | 55.0% | |
| ACTCTTGCTGCACATGTCGC+CGG | + | chr2_1:3517593-3517612 | None:intergenic | 55.0% | |
| GCTTCTTCAACAAGCGGAGC+CGG | - | chr2_1:3517667-3517686 | Msa0188330:CDS | 55.0% | |
| AACGTCTCACTCCGTAGCAG+CGG | - | chr2_1:3517743-3517762 | Msa0188330:CDS | 55.0% | |
| ACAGTGTAGAGCCGCTGCTA+CGG | + | chr2_1:3517757-3517776 | None:intergenic | 55.0% | |
| ! | AGAGGAGCTGATTTCGACGG+CGG | + | chr2_1:3517785-3517804 | None:intergenic | 55.0% |
| ! | ACCCTAACAGAGGAGCGTGT+TGG | + | chr2_1:3517862-3517881 | None:intergenic | 55.0% |
| ! | GAAAGTGGCGGTGATGGTGA+TGG | - | chr2_1:3518028-3518047 | Msa0188330:CDS | 55.0% |
| TGTTACCGGCAACAGCCATG+TGG | - | chr2_1:3518194-3518213 | Msa0188330:CDS | 55.0% | |
| GTTACCGGCAACAGCCATGT+GGG | - | chr2_1:3518195-3518214 | Msa0188330:CDS | 55.0% | |
| ! | AACAGCCATGTGGGCTACAG+CGG | - | chr2_1:3518204-3518223 | Msa0188330:CDS | 55.0% |
| TGGATGGTACCAGTGAGTGG+TGG | - | chr2_1:3518244-3518263 | Msa0188330:CDS | 55.0% | |
| !! | TGTTGTTGGTGGTGGGGATG+GGG | + | chr2_1:3517194-3517213 | None:intergenic | 55.0% |
| !! | CTTGTTGTTGGTGGTGGGGA+TGG | + | chr2_1:3517196-3517215 | None:intergenic | 55.0% |
| CAGATCTGGTGGCAATTGCC+AGG | + | chr2_1:3517415-3517434 | None:intergenic | 55.0% | |
| AGGATTTGCAACCGCGGTGA+CGG | + | chr2_1:3517507-3517526 | None:intergenic | 55.0% | |
| CACACAAAAGTTGACGGCCG+TGG | - | chr2_1:3517551-3517570 | Msa0188330:CDS | 55.0% | |
| GCATTCGAATTCTCCGGCCA+CGG | + | chr2_1:3517571-3517590 | None:intergenic | 55.0% | |
| TGGCCGGAGAATTCGAATGC+CGG | - | chr2_1:3517571-3517590 | Msa0188330:CDS | 55.0% | |
| TCGCCGGCATTCGAATTCTC+CGG | + | chr2_1:3517577-3517596 | None:intergenic | 55.0% | |
| ACTCTTGCTGCACATGTCGC+CGG | + | chr2_1:3517593-3517612 | None:intergenic | 55.0% | |
| GCTTCTTCAACAAGCGGAGC+CGG | - | chr2_1:3517667-3517686 | Msa0188330:CDS | 55.0% | |
| AACGTCTCACTCCGTAGCAG+CGG | - | chr2_1:3517743-3517762 | Msa0188330:CDS | 55.0% | |
| ACAGTGTAGAGCCGCTGCTA+CGG | + | chr2_1:3517757-3517776 | None:intergenic | 55.0% | |
| ! | AGAGGAGCTGATTTCGACGG+CGG | + | chr2_1:3517785-3517804 | None:intergenic | 55.0% |
| ! | ACCCTAACAGAGGAGCGTGT+TGG | + | chr2_1:3517862-3517881 | None:intergenic | 55.0% |
| ! | GAAAGTGGCGGTGATGGTGA+TGG | - | chr2_1:3518028-3518047 | Msa0188330:CDS | 55.0% |
| TGTTACCGGCAACAGCCATG+TGG | - | chr2_1:3518194-3518213 | Msa0188330:CDS | 55.0% | |
| GTTACCGGCAACAGCCATGT+GGG | - | chr2_1:3518195-3518214 | Msa0188330:CDS | 55.0% | |
| ! | AACAGCCATGTGGGCTACAG+CGG | - | chr2_1:3518204-3518223 | Msa0188330:CDS | 55.0% |
| TGGATGGTACCAGTGAGTGG+TGG | - | chr2_1:3518244-3518263 | Msa0188330:CDS | 55.0% | |
| AACTTCAACCGCCGTCACCG+CGG | - | chr2_1:3517493-3517512 | Msa0188330:CDS | 60.0% | |
| ! | ATTTGCAACCGCGGTGACGG+CGG | + | chr2_1:3517504-3517523 | None:intergenic | 60.0% |
| CAAAAGTTGACGGCCGTGGC+CGG | - | chr2_1:3517555-3517574 | Msa0188330:CDS | 60.0% | |
| ! | GATATGGGCGAAGGTGACGG+TGG | - | chr2_1:3518097-3518116 | Msa0188330:CDS | 60.0% |
| GTAGCCCACATGGCTGTTGC+CGG | + | chr2_1:3518202-3518221 | None:intergenic | 60.0% | |
| ! | ACAGCCATGTGGGCTACAGC+GGG | - | chr2_1:3518205-3518224 | Msa0188330:CDS | 60.0% |
| GTTGCAGCACCACCACTCAC+TGG | + | chr2_1:3518256-3518275 | None:intergenic | 60.0% | |
| !! | GTTCCAGCTTCTGGTGGTGG+TGG | - | chr2_1:3518406-3518425 | Msa0188330:CDS | 60.0% |
| AACTTCAACCGCCGTCACCG+CGG | - | chr2_1:3517493-3517512 | Msa0188330:CDS | 60.0% | |
| ! | ATTTGCAACCGCGGTGACGG+CGG | + | chr2_1:3517504-3517523 | None:intergenic | 60.0% |
| CAAAAGTTGACGGCCGTGGC+CGG | - | chr2_1:3517555-3517574 | Msa0188330:CDS | 60.0% | |
| ! | GATATGGGCGAAGGTGACGG+TGG | - | chr2_1:3518097-3518116 | Msa0188330:CDS | 60.0% |
| GTAGCCCACATGGCTGTTGC+CGG | + | chr2_1:3518202-3518221 | None:intergenic | 60.0% | |
| ! | ACAGCCATGTGGGCTACAGC+GGG | - | chr2_1:3518205-3518224 | Msa0188330:CDS | 60.0% |
| GTTGCAGCACCACCACTCAC+TGG | + | chr2_1:3518256-3518275 | None:intergenic | 60.0% | |
| !! | GTTCCAGCTTCTGGTGGTGG+TGG | - | chr2_1:3518406-3518425 | Msa0188330:CDS | 60.0% |
| ATCATCGCTGCCACCGGCAC+CGG | - | chr2_1:3517692-3517711 | Msa0188330:CDS | 65.0% | |
| ! | TGGGATTGTTCCGGTGCCGG+TGG | + | chr2_1:3517705-3517724 | None:intergenic | 65.0% |
| GGCTGGGATTGTTCCGGTGC+CGG | + | chr2_1:3517708-3517727 | None:intergenic | 65.0% | |
| ! | ATGGGCGAAGGTGACGGTGG+TGG | - | chr2_1:3518100-3518119 | Msa0188330:CDS | 65.0% |
| !! | GAAGGTGACGGTGGTGGAGG+AGG | - | chr2_1:3518106-3518125 | Msa0188330:CDS | 65.0% |
| ! | CAGCCATGTGGGCTACAGCG+GGG | - | chr2_1:3518206-3518225 | Msa0188330:CDS | 65.0% |
| ACTCCCCGCTGTAGCCCACA+TGG | + | chr2_1:3518212-3518231 | None:intergenic | 65.0% | |
| ! | ATGTGGGCTACAGCGGGGAG+TGG | - | chr2_1:3518211-3518230 | Msa0188330:CDS | 65.0% |
| CCACCACCACCACCAGAAGC+TGG | + | chr2_1:3518412-3518431 | None:intergenic | 65.0% | |
| !! | CCAGCTTCTGGTGGTGGTGG+TGG | - | chr2_1:3518409-3518428 | Msa0188330:CDS | 65.0% |
| !! | GCTTCTGGTGGTGGTGGTGG+TGG | - | chr2_1:3518412-3518431 | Msa0188330:CDS | 65.0% |
| ATCATCGCTGCCACCGGCAC+CGG | - | chr2_1:3517692-3517711 | Msa0188330:CDS | 65.0% | |
| ! | TGGGATTGTTCCGGTGCCGG+TGG | + | chr2_1:3517705-3517724 | None:intergenic | 65.0% |
| GGCTGGGATTGTTCCGGTGC+CGG | + | chr2_1:3517708-3517727 | None:intergenic | 65.0% | |
| ! | ATGGGCGAAGGTGACGGTGG+TGG | - | chr2_1:3518100-3518119 | Msa0188330:CDS | 65.0% |
| !! | GAAGGTGACGGTGGTGGAGG+AGG | - | chr2_1:3518106-3518125 | Msa0188330:CDS | 65.0% |
| ! | CAGCCATGTGGGCTACAGCG+GGG | - | chr2_1:3518206-3518225 | Msa0188330:CDS | 65.0% |
| ACTCCCCGCTGTAGCCCACA+TGG | + | chr2_1:3518212-3518231 | None:intergenic | 65.0% | |
| ! | ATGTGGGCTACAGCGGGGAG+TGG | - | chr2_1:3518211-3518230 | Msa0188330:CDS | 65.0% |
| CCACCACCACCACCAGAAGC+TGG | + | chr2_1:3518412-3518431 | None:intergenic | 65.0% | |
| !! | CCAGCTTCTGGTGGTGGTGG+TGG | - | chr2_1:3518409-3518428 | Msa0188330:CDS | 65.0% |
| !! | GCTTCTGGTGGTGGTGGTGG+TGG | - | chr2_1:3518412-3518431 | Msa0188330:CDS | 65.0% |
| CCGGTGGCAGCGATGATCGC+CGG | + | chr2_1:3517689-3517708 | None:intergenic | 70.0% | |
| CCGGCGATCATCGCTGCCAC+CGG | - | chr2_1:3517686-3517705 | Msa0188330:CDS | 70.0% | |
| ! | GGCGAAGGTGACGGTGGTGG+AGG | - | chr2_1:3518103-3518122 | Msa0188330:CDS | 70.0% |
| !! | GGTGACGGTGGTGGAGGAGG+TGG | - | chr2_1:3518109-3518128 | Msa0188330:CDS | 70.0% |
| !! | GACGGTGGTGGAGGAGGTGG+TGG | - | chr2_1:3518112-3518131 | Msa0188330:CDS | 70.0% |
| !! | GGTGGTGGAGGAGGTGGTGG+TGG | - | chr2_1:3518115-3518134 | Msa0188330:CDS | 70.0% |
| CCGGTGGCAGCGATGATCGC+CGG | + | chr2_1:3517689-3517708 | None:intergenic | 70.0% | |
| CCGGCGATCATCGCTGCCAC+CGG | - | chr2_1:3517686-3517705 | Msa0188330:CDS | 70.0% | |
| ! | GGCGAAGGTGACGGTGGTGG+AGG | - | chr2_1:3518103-3518122 | Msa0188330:CDS | 70.0% |
| !! | GGTGACGGTGGTGGAGGAGG+TGG | - | chr2_1:3518109-3518128 | Msa0188330:CDS | 70.0% |
| !! | GACGGTGGTGGAGGAGGTGG+TGG | - | chr2_1:3518112-3518131 | Msa0188330:CDS | 70.0% |
| !! | GGTGGTGGAGGAGGTGGTGG+TGG | - | chr2_1:3518115-3518134 | Msa0188330:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 3517134 | 3518699 | 3517134 | ID=Msa0188330;Name=Msa0188330 |
| chr2_1 | mRNA | 3517134 | 3518699 | 3517134 | ID=Msa0188330-mRNA-1;Parent=Msa0188330;Name=Msa0188330-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|-1|0|1|-1|1|1|0|521 |
| chr2_1 | exon | 3517134 | 3518699 | 3517134 | ID=Msa0188330-mRNA-1:exon:1498;Parent=Msa0188330-mRNA-1 |
| chr2_1 | CDS | 3517134 | 3518699 | 3517134 | ID=Msa0188330-mRNA-1:cds;Parent=Msa0188330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
