Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0308950 | XP_003592963.1 | 91.171 | 521 | 10 | 10 | 1 | 519 | 1 | 487 | 0.0 | 915 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0308950 | sp|Q9C518|TCP8_ARATH | 46.528 | 432 | 132 | 18 | 69 | 476 | 8 | 364 | 7.98e-80 | 258 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0308950 | G7INN6 | 91.171 | 521 | 10 | 10 | 1 | 519 | 1 | 487 | 0.0 | 915 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0308950 | TF | TCP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0188330 | Msa0308950 | 0.962466 | 6.546359e-121 | -8.615850e-47 |
| Msa0270590 | Msa0308950 | 0.842000 | 3.377571e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0308950 | MtrunA17_Chr2g0277361 | 93.548 | 465 | 7 | 9 | 1 | 463 | 1 | 444 | 0.0 | 843 |
| Msa0308950 | MtrunA17_Chr5g0416581 | 92.045 | 88 | 6 | 1 | 129 | 215 | 61 | 148 | 2.07e-49 | 174 |
| Msa0308950 | MtrunA17_Chr4g0060601 | 65.909 | 132 | 34 | 3 | 74 | 203 | 44 | 166 | 1.69e-45 | 165 |
| Msa0308950 | MtrunA17_Chr1g0211941 | 80.488 | 82 | 13 | 1 | 125 | 206 | 27 | 105 | 4.46e-38 | 140 |
| Msa0308950 | MtrunA17_Chr7g0224581 | 53.378 | 148 | 59 | 3 | 110 | 253 | 25 | 166 | 7.50e-38 | 140 |
| Msa0308950 | MtrunA17_Chr1g0204001 | 59.292 | 113 | 42 | 1 | 110 | 222 | 44 | 152 | 4.25e-36 | 137 |
| Msa0308950 | MtrunA17_Chr1g0164881 | 75.000 | 84 | 18 | 1 | 119 | 202 | 20 | 100 | 1.14e-35 | 133 |
| Msa0308950 | MtrunA17_Chr8g0350941 | 78.947 | 76 | 16 | 0 | 131 | 206 | 77 | 152 | 2.08e-35 | 135 |
| Msa0308950 | MtrunA17_Chr1g0180911 | 80.282 | 71 | 14 | 0 | 126 | 196 | 41 | 111 | 8.11e-35 | 129 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0308950 | AT1G58100.1 | 46.528 | 432 | 132 | 18 | 69 | 476 | 8 | 364 | 8.11e-81 | 258 |
| Msa0308950 | AT1G35560.1 | 42.899 | 338 | 94 | 10 | 131 | 462 | 52 | 296 | 4.45e-59 | 199 |
| Msa0308950 | AT1G58100.2 | 41.204 | 432 | 131 | 19 | 69 | 476 | 8 | 340 | 3.55e-57 | 195 |
| Msa0308950 | AT1G72010.1 | 40.604 | 298 | 104 | 10 | 123 | 397 | 52 | 299 | 5.07e-48 | 171 |
| Msa0308950 | AT1G69690.1 | 58.599 | 157 | 38 | 3 | 129 | 273 | 46 | 187 | 1.50e-41 | 152 |
| Msa0308950 | AT5G23280.1 | 77.108 | 83 | 16 | 1 | 124 | 206 | 32 | 111 | 5.19e-37 | 137 |
| Msa0308950 | AT2G45680.1 | 62.500 | 112 | 40 | 1 | 102 | 211 | 41 | 152 | 1.87e-36 | 139 |
| Msa0308950 | AT5G08330.1 | 68.750 | 96 | 27 | 1 | 109 | 204 | 9 | 101 | 1.17e-35 | 133 |
| Msa0308950 | AT3G27010.2 | 52.756 | 127 | 43 | 2 | 69 | 195 | 30 | 139 | 2.81e-34 | 132 |
| Msa0308950 | AT3G27010.1 | 52.756 | 127 | 43 | 2 | 69 | 195 | 30 | 139 | 2.81e-34 | 132 |
| Msa0308950 | AT5G51910.1 | 78.205 | 78 | 16 | 1 | 130 | 206 | 52 | 129 | 9.01e-34 | 130 |
| Msa0308950 | AT5G51910.2 | 78.205 | 78 | 16 | 1 | 130 | 206 | 52 | 129 | 9.01e-34 | 130 |
| Msa0308950 | AT2G37000.1 | 80.000 | 60 | 12 | 0 | 134 | 193 | 43 | 102 | 3.47e-27 | 108 |
| Msa0308950 | AT5G41030.1 | 51.546 | 97 | 35 | 1 | 131 | 227 | 65 | 149 | 1.66e-26 | 108 |
| Msa0308950 | AT3G45150.1 | 61.905 | 63 | 24 | 0 | 131 | 193 | 14 | 76 | 1.23e-21 | 92.4 |
Find 149 sgRNAs with CRISPR-Local
Find 328 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGCCATCACCTTTCATTA+TGG | 0.235639 | 2_4:+3399266 | Msa0308950:CDS |
| CTTGTTGTTGGTGGTGGGGA+TGG | 0.241546 | 2_4:-3399188 | None:intergenic |
| AGGTTCAATGTTCCAGCTTC+TGG | 0.242129 | 2_4:+3400386 | Msa0308950:CDS |
| GTTTGAAGAAGGTTGAATAT+TGG | 0.260266 | 2_4:-3399298 | None:intergenic |
| TTGAAGAAAATGGTTGAATT+TGG | 0.273936 | 2_4:-3399461 | None:intergenic |
| TCACCAACAACAGGATGATA+TGG | 0.275830 | 2_4:+3400070 | Msa0308950:CDS |
| TTGTTGTTGGTGGTGGGGAT+GGG | 0.292871 | 2_4:-3399187 | None:intergenic |
| TTCCAGTTGACCAGAGAATT+AGG | 0.308053 | 2_4:+3399603 | Msa0308950:CDS |
| GATAGTCATTGTGAGGTATT+AGG | 0.316778 | 2_4:-3400671 | None:intergenic |
| GACGGTGGTGGAGGAGGTGG+TGG | 0.325996 | 2_4:+3400101 | Msa0308950:CDS |
| GACTGAACATGAGGTGTAAA+AGG | 0.331793 | 2_4:-3400308 | None:intergenic |
| ATGATTCTTGTTGTTGGTGG+TGG | 0.333014 | 2_4:-3399194 | None:intergenic |
| CGGGGAGTGGAAGTACAATT+TGG | 0.342926 | 2_4:+3400213 | Msa0308950:CDS |
| TCTTCTCCACTCTCATCATT+AGG | 0.347346 | 2_4:-3400644 | None:intergenic |
| TGTTGTTGGTGGTGGGGATG+GGG | 0.348885 | 2_4:-3399186 | None:intergenic |
| CGCCCATATCATCCTGTTGT+TGG | 0.355044 | 2_4:-3400073 | None:intergenic |
| AGGCCATCACCTTTCATTAT+GGG | 0.359459 | 2_4:+3399267 | Msa0308950:CDS |
| GTGGGGATGGGGATGAATAT+TGG | 0.363141 | 2_4:-3399175 | None:intergenic |
| GAAGGTGACGGTGGTGGAGG+AGG | 0.367290 | 2_4:+3400095 | Msa0308950:CDS |
| GGCTGGGATTGTTCCGGTGC+CGG | 0.367521 | 2_4:-3399694 | None:intergenic |
| CTGTCCTTGGTGGATCGTTT+TGG | 0.369093 | 2_4:-3399516 | None:intergenic |
| TACCAACACGCTCCTCTGTT+AGG | 0.370083 | 2_4:+3399846 | Msa0308950:CDS |
| GTTGTTGCTGTTGCTGTTGT+TGG | 0.372670 | 2_4:-3399890 | None:intergenic |
| TGGACGTGGTGGTTTACAAT+TGG | 0.382459 | 2_4:+3400439 | Msa0308950:CDS |
| TGATTCTTGTTGTTGGTGGT+GGG | 0.388715 | 2_4:-3399193 | None:intergenic |
| GTATCAACCATCACAGCATT+TGG | 0.390115 | 2_4:+3400469 | Msa0308950:CDS |
| GCGGTTGAAGTTGAAGAAAA+TGG | 0.393103 | 2_4:-3399471 | None:intergenic |
| GGCCTAATTCTCTGGTCAAC+TGG | 0.396838 | 2_4:-3399605 | None:intergenic |
| GTAGCCCACATGGCTGTTGC+CGG | 0.398412 | 2_4:-3400188 | None:intergenic |
| GGATTTGTGGCCTAATTCTC+TGG | 0.401966 | 2_4:-3399613 | None:intergenic |
| GATTCTTGTTGTTGGTGGTG+GGG | 0.404293 | 2_4:-3399192 | None:intergenic |
| GGTGGTGGAGGAGGTGGTGG+TGG | 0.404546 | 2_4:+3400104 | Msa0308950:CDS |
| GTGAGGATGATTCTTGTTGT+TGG | 0.411900 | 2_4:-3399200 | None:intergenic |
| TTGTTTCACCATCGGATTTG+TGG | 0.412133 | 2_4:-3399626 | None:intergenic |
| CCACTCTCATCATTAGGTTG+AGG | 0.418843 | 2_4:-3400638 | None:intergenic |
| GGTGACGGTGGTGGAGGAGG+TGG | 0.419720 | 2_4:+3400098 | Msa0308950:CDS |
| TATCAACCATCACAGCATTT+GGG | 0.420346 | 2_4:+3400470 | Msa0308950:CDS |
| GGACGTGGTGGTTTACAATT+GGG | 0.421245 | 2_4:+3400440 | Msa0308950:CDS |
| TCAACAACATTCAATGTCAT+TGG | 0.422221 | 2_4:+3400595 | Msa0308950:CDS |
| TTGTTGTTGTTGGATACATC+TGG | 0.423257 | 2_4:-3399432 | None:intergenic |
| GACGTTGAGCGTTGAGAAAT+TGG | 0.424642 | 2_4:-3399715 | None:intergenic |
| CCAGCTTCTGGTGGTGGTGG+TGG | 0.427315 | 2_4:+3400398 | Msa0308950:CDS |
| AAGAGTTGTTAACGTTGAAA+TGG | 0.427409 | 2_4:-3400556 | None:intergenic |
| GAGGGAGAAGAGTTTGAAGA+AGG | 0.435751 | 2_4:-3399309 | None:intergenic |
| GGTGGTGGTGTTGAATTTCA+AGG | 0.437658 | 2_4:+3400416 | Msa0308950:CDS |
| CAGATCTGGTGGCAATTGCC+AGG | 0.437859 | 2_4:-3399398 | None:intergenic |
| TCATCATTAGGTTGAGGTTG+AGG | 0.438959 | 2_4:-3400632 | None:intergenic |
| CTGATGAACGCTGATCAAAT+TGG | 0.440741 | 2_4:+3399915 | Msa0308950:CDS |
| GGGATGGGGATGAATATTGG+TGG | 0.440791 | 2_4:-3399172 | None:intergenic |
| GAAATTGGCTGGGATTGTTC+CGG | 0.446496 | 2_4:-3399700 | None:intergenic |
| GGCGAAGGTGACGGTGGTGG+AGG | 0.448389 | 2_4:+3400092 | Msa0308950:CDS |
| GGCTGTATCTGATTCCAACT+TGG | 0.449042 | 2_4:+3400496 | Msa0308950:CDS |
| ACAGCCATGTGGGCTACAGC+GGG | 0.455998 | 2_4:+3400194 | Msa0308950:CDS |
| GGAGCTTCTTCTTCTTCTGT+AGG | 0.458812 | 2_4:+3400125 | Msa0308950:CDS |
| ACCAACACGCTCCTCTGTTA+GGG | 0.462020 | 2_4:+3399847 | Msa0308950:CDS |
| GGTGATGGCCTTCCATCAAA+AGG | 0.462353 | 2_4:-3399255 | None:intergenic |
| AATGTTCCAGCTTCTGGTGG+TGG | 0.463360 | 2_4:+3400392 | Msa0308950:CDS |
| CTCAGTTACATTTCATGCCA+AGG | 0.466286 | 2_4:+3400366 | Msa0308950:CDS |
| CAAAACAAATCACCAACAAC+AGG | 0.468328 | 2_4:+3400061 | Msa0308950:CDS |
| CCATTCAATTGTTTCACCAT+CGG | 0.476071 | 2_4:-3399634 | None:intergenic |
| TTGAGCGTTGAGAAATTGGC+TGG | 0.476634 | 2_4:-3399711 | None:intergenic |
| ACACCTCATTGATGCTTCCC+TGG | 0.479655 | 2_4:+3399380 | Msa0308950:CDS |
| GCTTCTTCAACAAGCGGAGC+CGG | 0.481221 | 2_4:+3399656 | Msa0308950:CDS |
| TCGACCGTCAAATATGTTAC+CGG | 0.485929 | 2_4:+3400169 | Msa0308950:CDS |
| ATCATCGCTGCCACCGGCAC+CGG | 0.486326 | 2_4:+3399681 | Msa0308950:CDS |
| ATGGGCGAAGGTGACGGTGG+TGG | 0.487166 | 2_4:+3400089 | Msa0308950:CDS |
| AGGATGATTCTTGTTGTTGG+TGG | 0.493938 | 2_4:-3399197 | None:intergenic |
| ATGTGGGCTACAGCGGGGAG+TGG | 0.494234 | 2_4:+3400200 | Msa0308950:CDS |
| GCTGTATCTGATTCCAACTT+GGG | 0.503244 | 2_4:+3400497 | Msa0308950:CDS |
| AGGATTTGCAACCGCGGTGA+CGG | 0.503756 | 2_4:-3399493 | None:intergenic |
| ACGAGAATTACATGAGAAAA+CGG | 0.506668 | 2_4:+3399952 | Msa0308950:CDS |
| CTTAATGCTTATACAAGAGC+TGG | 0.507717 | 2_4:+3400533 | Msa0308950:CDS |
| CATGTTCAGTCTCAAAATCA+AGG | 0.508213 | 2_4:+3400320 | Msa0308950:CDS |
| AGCAGCAAACATACCCAAGT+TGG | 0.510675 | 2_4:-3400510 | None:intergenic |
| ACCATCACAGCATTTGGGAT+TGG | 0.511721 | 2_4:+3400475 | Msa0308950:CDS |
| GTTCCAGCTTCTGGTGGTGG+TGG | 0.513092 | 2_4:+3400395 | Msa0308950:CDS |
| CCGGCGATCATCGCTGCCAC+CGG | 0.513461 | 2_4:+3399675 | Msa0308950:CDS |
| CAAAAGTTGACGGCCGTGGC+CGG | 0.517328 | 2_4:+3399544 | Msa0308950:CDS |
| CCGGTGGCAGCGATGATCGC+CGG | 0.518014 | 2_4:-3399675 | None:intergenic |
| CAAAATGAAAGTGGCGGTGA+TGG | 0.520198 | 2_4:+3400011 | Msa0308950:CDS |
| GTTGCTGTTGCTGTTGTTGG+TGG | 0.522829 | 2_4:-3399887 | None:intergenic |
| TGGTACGCAGCTTCTTCGTA+AGG | 0.525067 | 2_4:-3399828 | None:intergenic |
| TTCAATGTTCCAGCTTCTGG+TGG | 0.527514 | 2_4:+3400389 | Msa0308950:CDS |
| CACCAACAACAGGATGATAT+GGG | 0.530307 | 2_4:+3400071 | Msa0308950:CDS |
| CCGATGGTGAAACAATTGAA+TGG | 0.532182 | 2_4:+3399634 | Msa0308950:CDS |
| GCATTCGAATTCTCCGGCCA+CGG | 0.535337 | 2_4:-3399557 | None:intergenic |
| TGCTGATGATGAGAATTTGA+AGG | 0.536098 | 2_4:-3399222 | None:intergenic |
| TCGCCGGCATTCGAATTCTC+CGG | 0.537835 | 2_4:-3399563 | None:intergenic |
| AACAACAATCAAAATGAAAG+TGG | 0.537872 | 2_4:+3400002 | Msa0308950:CDS |
| CACACAAAAGTTGACGGCCG+TGG | 0.538934 | 2_4:+3399540 | Msa0308950:CDS |
| TGGAAGAGGAGGTTCAGATC+TGG | 0.540562 | 2_4:-3399412 | None:intergenic |
| TGTTGTTGGTGGTGTTGATG+AGG | 0.542903 | 2_4:-3399876 | None:intergenic |
| ACAGTGTAGAGCCGCTGCTA+CGG | 0.544103 | 2_4:-3399743 | None:intergenic |
| AGAAGGTTGAATATTGGAGA+TGG | 0.548864 | 2_4:-3399292 | None:intergenic |
| GACAGGCACACAAAAGTTGA+CGG | 0.553080 | 2_4:+3399534 | Msa0308950:CDS |
| TTGTTGGATACATCTGGAAG+AGG | 0.554700 | 2_4:-3399426 | None:intergenic |
| ACTCCCCGCTGTAGCCCACA+TGG | 0.560090 | 2_4:-3400198 | None:intergenic |
| GTGATGGCCTTCCATCAAAA+GGG | 0.560570 | 2_4:-3399254 | None:intergenic |
| AACAGCCATGTGGGCTACAG+CGG | 0.560758 | 2_4:+3400193 | Msa0308950:CDS |
| GTTGCCGGTAACATATTTGA+CGG | 0.564703 | 2_4:-3400173 | None:intergenic |
| CAAAACGATCCACCAAGGAC+AGG | 0.572544 | 2_4:+3399517 | Msa0308950:CDS |
| GATGATATGGGCGAAGGTGA+CGG | 0.576236 | 2_4:+3400083 | Msa0308950:CDS |
| TGGGATTGTTCCGGTGCCGG+TGG | 0.577716 | 2_4:-3399691 | None:intergenic |
| ATTTGCAACCGCGGTGACGG+CGG | 0.577827 | 2_4:-3399490 | None:intergenic |
| GTTGAATTTCAAGGTGGACG+TGG | 0.582295 | 2_4:+3400425 | Msa0308950:CDS |
| ACTCTTGCTGCACATGTCGC+CGG | 0.582995 | 2_4:-3399579 | None:intergenic |
| GTTGCAGCACCACCACTCAC+TGG | 0.588807 | 2_4:-3400242 | None:intergenic |
| TTCTCATCATCAGCAGCTTG+TGG | 0.593589 | 2_4:+3399230 | Msa0308950:CDS |
| TGGCCGGAGAATTCGAATGC+CGG | 0.599117 | 2_4:+3399560 | Msa0308950:CDS |
| GAGATGGAGCCCATAATGAA+AGG | 0.601517 | 2_4:-3399276 | None:intergenic |
| GAGCCCATAATGAAAGGTGA+TGG | 0.605278 | 2_4:-3399270 | None:intergenic |
| TTGGATACATCTGGAAGAGG+AGG | 0.605386 | 2_4:-3399423 | None:intergenic |
| TGAATGGCTTCTTCAACAAG+CGG | 0.607294 | 2_4:+3399650 | Msa0308950:CDS |
| ATGATGAGAATTTGAAGGTG+AGG | 0.608155 | 2_4:-3399217 | None:intergenic |
| GGCATGAAATGTAACTGAGA+GGG | 0.612083 | 2_4:-3400362 | None:intergenic |
| GCCAATCCCAAATGCTGTGA+TGG | 0.613902 | 2_4:-3400476 | None:intergenic |
| GAAGCTGGAACATTGAACCT+TGG | 0.618817 | 2_4:-3400383 | None:intergenic |
| GAGTGGAAGTACAATTTGGA+TGG | 0.623430 | 2_4:+3400217 | Msa0308950:CDS |
| CAAAACAACAAGCAGAAGAG+AGG | 0.623869 | 2_4:+3399147 | Msa0308950:CDS |
| GATATGGGCGAAGGTGACGG+TGG | 0.625298 | 2_4:+3400086 | Msa0308950:CDS |
| AGATCTGGTGGCAATTGCCA+GGG | 0.625421 | 2_4:-3399397 | None:intergenic |
| CCTCAACCTAATGATGAGAG+TGG | 0.625980 | 2_4:+3400638 | Msa0308950:CDS |
| CAACAGGATGATATGGGCGA+AGG | 0.628122 | 2_4:+3400077 | Msa0308950:CDS |
| AACTTCAACCGCCGTCACCG+CGG | 0.629301 | 2_4:+3399482 | Msa0308950:CDS |
| GAAAGTGGCGGTGATGGTGA+TGG | 0.632003 | 2_4:+3400017 | Msa0308950:CDS |
| AAGAGGAGGTTCAGATCTGG+TGG | 0.633145 | 2_4:-3399409 | None:intergenic |
| AACGTCTCACTCCGTAGCAG+CGG | 0.639266 | 2_4:+3399732 | Msa0308950:CDS |
| ACCCTAACAGAGGAGCGTGT+TGG | 0.640297 | 2_4:-3399848 | None:intergenic |
| TGAGCGTTGAGAAATTGGCT+GGG | 0.640396 | 2_4:-3399710 | None:intergenic |
| GAATTAGGCCACAAATCCGA+TGG | 0.643115 | 2_4:+3399618 | Msa0308950:CDS |
| AGCATCAATGAGGTGTTGAG+TGG | 0.643841 | 2_4:-3399373 | None:intergenic |
| CTGAGAGGAGCTGATTTCGA+CGG | 0.644392 | 2_4:-3399774 | None:intergenic |
| AACAATCAAAATGAAAGTGG+CGG | 0.649002 | 2_4:+3400005 | Msa0308950:CDS |
| GCATCAATGAGGTGTTGAGT+GGG | 0.650961 | 2_4:-3399372 | None:intergenic |
| GTTACCGGCAACAGCCATGT+GGG | 0.654057 | 2_4:+3400184 | Msa0308950:CDS |
| TGTTACCGGCAACAGCCATG+TGG | 0.658913 | 2_4:+3400183 | Msa0308950:CDS |
| GGTAGTAGATAGTCATTGTG+AGG | 0.659915 | 2_4:-3400678 | None:intergenic |
| GAATTTCAAGGTGGACGTGG+TGG | 0.660159 | 2_4:+3400428 | Msa0308950:CDS |
| TGGCATGAAATGTAACTGAG+AGG | 0.665182 | 2_4:-3400363 | None:intergenic |
| TCCTCCAAAACGATCCACCA+AGG | 0.665860 | 2_4:+3399512 | Msa0308950:CDS |
| CAGCCATGTGGGCTACAGCG+GGG | 0.667527 | 2_4:+3400195 | Msa0308950:CDS |
| AGAGGAGCTGATTTCGACGG+CGG | 0.670392 | 2_4:-3399771 | None:intergenic |
| AGACACAGACACAAAACATG+TGG | 0.683636 | 2_4:+3400285 | Msa0308950:CDS |
| TTGCCAGGGAAGCATCAATG+AGG | 0.690178 | 2_4:-3399383 | None:intergenic |
| ATTTGGATGGTACCAGTGAG+TGG | 0.695345 | 2_4:+3400230 | Msa0308950:CDS |
| TGAGGATGAAACCCTAACAG+AGG | 0.710378 | 2_4:-3399858 | None:intergenic |
| TGGATGGTACCAGTGAGTGG+TGG | 0.715883 | 2_4:+3400233 | Msa0308950:CDS |
| AGCGCGCTATGAAAACTGAG+AGG | 0.721312 | 2_4:-3399789 | None:intergenic |
| GGTGGTGTTGAATTTCAAGG+TGG | 0.744371 | 2_4:+3400419 | Msa0308950:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGATTTGTTTTGAAACTTTT+GGG | - | chr2_4:3400053-3400072 | None:intergenic | 20.0% |
| !!! | TGATTTGTTTTGAAACTTTT+GGG | - | chr2_4:3400053-3400072 | None:intergenic | 20.0% |
| ! | TTGAAGAAAATGGTTGAATT+TGG | - | chr2_4:3399464-3399483 | None:intergenic | 25.0% |
| ! | AACAACAATCAAAATGAAAG+TGG | + | chr2_4:3400002-3400021 | Msa0308950:CDS | 25.0% |
| !!! | GTGATTTGTTTTGAAACTTT+TGG | - | chr2_4:3400054-3400073 | None:intergenic | 25.0% |
| ! | TTGAAGAAAATGGTTGAATT+TGG | - | chr2_4:3399464-3399483 | None:intergenic | 25.0% |
| ! | AACAACAATCAAAATGAAAG+TGG | + | chr2_4:3400002-3400021 | Msa0308950:CDS | 25.0% |
| !!! | GTGATTTGTTTTGAAACTTT+TGG | - | chr2_4:3400054-3400073 | None:intergenic | 25.0% |
| GTTTGAAGAAGGTTGAATAT+TGG | - | chr2_4:3399301-3399320 | None:intergenic | 30.0% | |
| ACGAGAATTACATGAGAAAA+CGG | + | chr2_4:3399952-3399971 | Msa0308950:CDS | 30.0% | |
| AACAATCAAAATGAAAGTGG+CGG | + | chr2_4:3400005-3400024 | Msa0308950:CDS | 30.0% | |
| ! | TCTGTAGGTAATTCTTTTTC+TGG | + | chr2_4:3400140-3400159 | Msa0308950:CDS | 30.0% |
| AAGAGTTGTTAACGTTGAAA+TGG | - | chr2_4:3400559-3400578 | None:intergenic | 30.0% | |
| TCAACAACATTCAATGTCAT+TGG | + | chr2_4:3400595-3400614 | Msa0308950:CDS | 30.0% | |
| GTTTGAAGAAGGTTGAATAT+TGG | - | chr2_4:3399301-3399320 | None:intergenic | 30.0% | |
| ACGAGAATTACATGAGAAAA+CGG | + | chr2_4:3399952-3399971 | Msa0308950:CDS | 30.0% | |
| AACAATCAAAATGAAAGTGG+CGG | + | chr2_4:3400005-3400024 | Msa0308950:CDS | 30.0% | |
| ! | TCTGTAGGTAATTCTTTTTC+TGG | + | chr2_4:3400140-3400159 | Msa0308950:CDS | 30.0% |
| AAGAGTTGTTAACGTTGAAA+TGG | - | chr2_4:3400559-3400578 | None:intergenic | 30.0% | |
| TCAACAACATTCAATGTCAT+TGG | + | chr2_4:3400595-3400614 | Msa0308950:CDS | 30.0% | |
| ATGATGAGAATTTGAAGGTG+AGG | - | chr2_4:3399220-3399239 | None:intergenic | 35.0% | |
| ! | TGCTGATGATGAGAATTTGA+AGG | - | chr2_4:3399225-3399244 | None:intergenic | 35.0% |
| AGAAGGTTGAATATTGGAGA+TGG | - | chr2_4:3399295-3399314 | None:intergenic | 35.0% | |
| GAAGAAGAAGAAGAATTGGA+GGG | - | chr2_4:3399330-3399349 | None:intergenic | 35.0% | |
| TGAAGAAGAAGAAGAATTGG+AGG | - | chr2_4:3399331-3399350 | None:intergenic | 35.0% | |
| AGCTGAAGAAGAAGAAGAAT+TGG | - | chr2_4:3399334-3399353 | None:intergenic | 35.0% | |
| ! | TTGTTGTTGTTGGATACATC+TGG | - | chr2_4:3399435-3399454 | None:intergenic | 35.0% |
| ! | TTGGTTGTTGTTGTTGTTGT+TGG | - | chr2_4:3399445-3399464 | None:intergenic | 35.0% |
| CCATTCAATTGTTTCACCAT+CGG | - | chr2_4:3399637-3399656 | None:intergenic | 35.0% | |
| CAAAACAAATCACCAACAAC+AGG | + | chr2_4:3400061-3400080 | Msa0308950:CDS | 35.0% | |
| !!! | TGATTTTGAGACTGAACATG+AGG | - | chr2_4:3400320-3400339 | None:intergenic | 35.0% |
| CATGTTCAGTCTCAAAATCA+AGG | + | chr2_4:3400320-3400339 | Msa0308950:CDS | 35.0% | |
| TATCAACCATCACAGCATTT+GGG | + | chr2_4:3400470-3400489 | Msa0308950:CDS | 35.0% | |
| CTTAATGCTTATACAAGAGC+TGG | + | chr2_4:3400533-3400552 | Msa0308950:CDS | 35.0% | |
| ATGATGAGAATTTGAAGGTG+AGG | - | chr2_4:3399220-3399239 | None:intergenic | 35.0% | |
| ! | TGCTGATGATGAGAATTTGA+AGG | - | chr2_4:3399225-3399244 | None:intergenic | 35.0% |
| AGAAGGTTGAATATTGGAGA+TGG | - | chr2_4:3399295-3399314 | None:intergenic | 35.0% | |
| GAAGAAGAAGAAGAATTGGA+GGG | - | chr2_4:3399330-3399349 | None:intergenic | 35.0% | |
| TGAAGAAGAAGAAGAATTGG+AGG | - | chr2_4:3399331-3399350 | None:intergenic | 35.0% | |
| AGCTGAAGAAGAAGAAGAAT+TGG | - | chr2_4:3399334-3399353 | None:intergenic | 35.0% | |
| ! | TTGTTGTTGTTGGATACATC+TGG | - | chr2_4:3399435-3399454 | None:intergenic | 35.0% |
| ! | TTGGTTGTTGTTGTTGTTGT+TGG | - | chr2_4:3399445-3399464 | None:intergenic | 35.0% |
| CCATTCAATTGTTTCACCAT+CGG | - | chr2_4:3399637-3399656 | None:intergenic | 35.0% | |
| CAAAACAAATCACCAACAAC+AGG | + | chr2_4:3400061-3400080 | Msa0308950:CDS | 35.0% | |
| !!! | TGATTTTGAGACTGAACATG+AGG | - | chr2_4:3400320-3400339 | None:intergenic | 35.0% |
| CATGTTCAGTCTCAAAATCA+AGG | + | chr2_4:3400320-3400339 | Msa0308950:CDS | 35.0% | |
| TATCAACCATCACAGCATTT+GGG | + | chr2_4:3400470-3400489 | Msa0308950:CDS | 35.0% | |
| CTTAATGCTTATACAAGAGC+TGG | + | chr2_4:3400533-3400552 | Msa0308950:CDS | 35.0% | |
| CAAAACAACAAGCAGAAGAG+AGG | + | chr2_4:3399147-3399166 | Msa0308950:CDS | 40.0% | |
| !! | TGATTCTTGTTGTTGGTGGT+GGG | - | chr2_4:3399196-3399215 | None:intergenic | 40.0% |
| !! | ATGATTCTTGTTGTTGGTGG+TGG | - | chr2_4:3399197-3399216 | None:intergenic | 40.0% |
| !! | AGGATGATTCTTGTTGTTGG+TGG | - | chr2_4:3399200-3399219 | None:intergenic | 40.0% |
| ! | GTGAGGATGATTCTTGTTGT+TGG | - | chr2_4:3399203-3399222 | None:intergenic | 40.0% |
| AAGGCCATCACCTTTCATTA+TGG | + | chr2_4:3399266-3399285 | Msa0308950:CDS | 40.0% | |
| AGGCCATCACCTTTCATTAT+GGG | + | chr2_4:3399267-3399286 | Msa0308950:CDS | 40.0% | |
| TTGTTGGATACATCTGGAAG+AGG | - | chr2_4:3399429-3399448 | None:intergenic | 40.0% | |
| GCGGTTGAAGTTGAAGAAAA+TGG | - | chr2_4:3399474-3399493 | None:intergenic | 40.0% | |
| TTCCAGTTGACCAGAGAATT+AGG | + | chr2_4:3399603-3399622 | Msa0308950:CDS | 40.0% | |
| TTGTTTCACCATCGGATTTG+TGG | - | chr2_4:3399629-3399648 | None:intergenic | 40.0% | |
| CCGATGGTGAAACAATTGAA+TGG | + | chr2_4:3399634-3399653 | Msa0308950:CDS | 40.0% | |
| TGAATGGCTTCTTCAACAAG+CGG | + | chr2_4:3399650-3399669 | Msa0308950:CDS | 40.0% | |
| CTGATGAACGCTGATCAAAT+TGG | + | chr2_4:3399915-3399934 | Msa0308950:CDS | 40.0% | |
| TCACCAACAACAGGATGATA+TGG | + | chr2_4:3400070-3400089 | Msa0308950:CDS | 40.0% | |
| CACCAACAACAGGATGATAT+GGG | + | chr2_4:3400071-3400090 | Msa0308950:CDS | 40.0% | |
| TCGACCGTCAAATATGTTAC+CGG | + | chr2_4:3400169-3400188 | Msa0308950:CDS | 40.0% | |
| GTTGCCGGTAACATATTTGA+CGG | - | chr2_4:3400176-3400195 | None:intergenic | 40.0% | |
| ! | GAGTGGAAGTACAATTTGGA+TGG | + | chr2_4:3400217-3400236 | Msa0308950:CDS | 40.0% |
| AGACACAGACACAAAACATG+TGG | + | chr2_4:3400285-3400304 | Msa0308950:CDS | 40.0% | |
| GACTGAACATGAGGTGTAAA+AGG | - | chr2_4:3400311-3400330 | None:intergenic | 40.0% | |
| GGCATGAAATGTAACTGAGA+GGG | - | chr2_4:3400365-3400384 | None:intergenic | 40.0% | |
| TGGCATGAAATGTAACTGAG+AGG | - | chr2_4:3400366-3400385 | None:intergenic | 40.0% | |
| CTCAGTTACATTTCATGCCA+AGG | + | chr2_4:3400366-3400385 | Msa0308950:CDS | 40.0% | |
| GTATCAACCATCACAGCATT+TGG | + | chr2_4:3400469-3400488 | Msa0308950:CDS | 40.0% | |
| GCTGTATCTGATTCCAACTT+GGG | + | chr2_4:3400497-3400516 | Msa0308950:CDS | 40.0% | |
| !! | TCATCATTAGGTTGAGGTTG+AGG | - | chr2_4:3400635-3400654 | None:intergenic | 40.0% |
| TCTTCTCCACTCTCATCATT+AGG | - | chr2_4:3400647-3400666 | None:intergenic | 40.0% | |
| CAAAACAACAAGCAGAAGAG+AGG | + | chr2_4:3399147-3399166 | Msa0308950:CDS | 40.0% | |
| !! | TGATTCTTGTTGTTGGTGGT+GGG | - | chr2_4:3399196-3399215 | None:intergenic | 40.0% |
| !! | ATGATTCTTGTTGTTGGTGG+TGG | - | chr2_4:3399197-3399216 | None:intergenic | 40.0% |
| !! | AGGATGATTCTTGTTGTTGG+TGG | - | chr2_4:3399200-3399219 | None:intergenic | 40.0% |
| ! | GTGAGGATGATTCTTGTTGT+TGG | - | chr2_4:3399203-3399222 | None:intergenic | 40.0% |
| AAGGCCATCACCTTTCATTA+TGG | + | chr2_4:3399266-3399285 | Msa0308950:CDS | 40.0% | |
| AGGCCATCACCTTTCATTAT+GGG | + | chr2_4:3399267-3399286 | Msa0308950:CDS | 40.0% | |
| TTGTTGGATACATCTGGAAG+AGG | - | chr2_4:3399429-3399448 | None:intergenic | 40.0% | |
| GCGGTTGAAGTTGAAGAAAA+TGG | - | chr2_4:3399474-3399493 | None:intergenic | 40.0% | |
| TTCCAGTTGACCAGAGAATT+AGG | + | chr2_4:3399603-3399622 | Msa0308950:CDS | 40.0% | |
| TTGTTTCACCATCGGATTTG+TGG | - | chr2_4:3399629-3399648 | None:intergenic | 40.0% | |
| CCGATGGTGAAACAATTGAA+TGG | + | chr2_4:3399634-3399653 | Msa0308950:CDS | 40.0% | |
| TGAATGGCTTCTTCAACAAG+CGG | + | chr2_4:3399650-3399669 | Msa0308950:CDS | 40.0% | |
| CTGATGAACGCTGATCAAAT+TGG | + | chr2_4:3399915-3399934 | Msa0308950:CDS | 40.0% | |
| TCACCAACAACAGGATGATA+TGG | + | chr2_4:3400070-3400089 | Msa0308950:CDS | 40.0% | |
| CACCAACAACAGGATGATAT+GGG | + | chr2_4:3400071-3400090 | Msa0308950:CDS | 40.0% | |
| TCGACCGTCAAATATGTTAC+CGG | + | chr2_4:3400169-3400188 | Msa0308950:CDS | 40.0% | |
| GTTGCCGGTAACATATTTGA+CGG | - | chr2_4:3400176-3400195 | None:intergenic | 40.0% | |
| ! | GAGTGGAAGTACAATTTGGA+TGG | + | chr2_4:3400217-3400236 | Msa0308950:CDS | 40.0% |
| AGACACAGACACAAAACATG+TGG | + | chr2_4:3400285-3400304 | Msa0308950:CDS | 40.0% | |
| GACTGAACATGAGGTGTAAA+AGG | - | chr2_4:3400311-3400330 | None:intergenic | 40.0% | |
| GGCATGAAATGTAACTGAGA+GGG | - | chr2_4:3400365-3400384 | None:intergenic | 40.0% | |
| TGGCATGAAATGTAACTGAG+AGG | - | chr2_4:3400366-3400385 | None:intergenic | 40.0% | |
| CTCAGTTACATTTCATGCCA+AGG | + | chr2_4:3400366-3400385 | Msa0308950:CDS | 40.0% | |
| GTATCAACCATCACAGCATT+TGG | + | chr2_4:3400469-3400488 | Msa0308950:CDS | 40.0% | |
| GCTGTATCTGATTCCAACTT+GGG | + | chr2_4:3400497-3400516 | Msa0308950:CDS | 40.0% | |
| !! | TCATCATTAGGTTGAGGTTG+AGG | - | chr2_4:3400635-3400654 | None:intergenic | 40.0% |
| TCTTCTCCACTCTCATCATT+AGG | - | chr2_4:3400647-3400666 | None:intergenic | 40.0% | |
| !! | GATTCTTGTTGTTGGTGGTG+GGG | - | chr2_4:3399195-3399214 | None:intergenic | 45.0% |
| TTCTCATCATCAGCAGCTTG+TGG | + | chr2_4:3399230-3399249 | Msa0308950:CDS | 45.0% | |
| ! | TTGTGGTCCCTTTTGATGGA+AGG | + | chr2_4:3399247-3399266 | Msa0308950:CDS | 45.0% |
| GTGATGGCCTTCCATCAAAA+GGG | - | chr2_4:3399257-3399276 | None:intergenic | 45.0% | |
| GAGCCCATAATGAAAGGTGA+TGG | - | chr2_4:3399273-3399292 | None:intergenic | 45.0% | |
| GAGATGGAGCCCATAATGAA+AGG | - | chr2_4:3399279-3399298 | None:intergenic | 45.0% | |
| GAGGGAGAAGAGTTTGAAGA+AGG | - | chr2_4:3399312-3399331 | None:intergenic | 45.0% | |
| !! | GCATCAATGAGGTGTTGAGT+GGG | - | chr2_4:3399375-3399394 | None:intergenic | 45.0% |
| !! | AGCATCAATGAGGTGTTGAG+TGG | - | chr2_4:3399376-3399395 | None:intergenic | 45.0% |
| TTGGATACATCTGGAAGAGG+AGG | - | chr2_4:3399426-3399445 | None:intergenic | 45.0% | |
| !! | TTTTGGAGGATTTGCAACCG+CGG | - | chr2_4:3399502-3399521 | None:intergenic | 45.0% |
| ! | AACTTTTGTGTGCCTGTCCT+TGG | - | chr2_4:3399532-3399551 | None:intergenic | 45.0% |
| GACAGGCACACAAAAGTTGA+CGG | + | chr2_4:3399534-3399553 | Msa0308950:CDS | 45.0% | |
| GGATTTGTGGCCTAATTCTC+TGG | - | chr2_4:3399616-3399635 | None:intergenic | 45.0% | |
| GAATTAGGCCACAAATCCGA+TGG | + | chr2_4:3399618-3399637 | Msa0308950:CDS | 45.0% | |
| GAAATTGGCTGGGATTGTTC+CGG | - | chr2_4:3399703-3399722 | None:intergenic | 45.0% | |
| !! | TGAGCGTTGAGAAATTGGCT+GGG | - | chr2_4:3399713-3399732 | None:intergenic | 45.0% |
| !! | TTGAGCGTTGAGAAATTGGC+TGG | - | chr2_4:3399714-3399733 | None:intergenic | 45.0% |
| !! | GACGTTGAGCGTTGAGAAAT+TGG | - | chr2_4:3399718-3399737 | None:intergenic | 45.0% |
| TGAGGATGAAACCCTAACAG+AGG | - | chr2_4:3399861-3399880 | None:intergenic | 45.0% | |
| !! | TGTTGTTGGTGGTGTTGATG+AGG | - | chr2_4:3399879-3399898 | None:intergenic | 45.0% |
| ! | GTTGTTGCTGTTGCTGTTGT+TGG | - | chr2_4:3399893-3399912 | None:intergenic | 45.0% |
| CAAAATGAAAGTGGCGGTGA+TGG | + | chr2_4:3400011-3400030 | Msa0308950:CDS | 45.0% | |
| GGAGCTTCTTCTTCTTCTGT+AGG | + | chr2_4:3400125-3400144 | Msa0308950:CDS | 45.0% | |
| ATTTGGATGGTACCAGTGAG+TGG | + | chr2_4:3400230-3400249 | Msa0308950:CDS | 45.0% | |
| GAAGCTGGAACATTGAACCT+TGG | - | chr2_4:3400386-3400405 | None:intergenic | 45.0% | |
| AGGTTCAATGTTCCAGCTTC+TGG | + | chr2_4:3400386-3400405 | Msa0308950:CDS | 45.0% | |
| TTCAATGTTCCAGCTTCTGG+TGG | + | chr2_4:3400389-3400408 | Msa0308950:CDS | 45.0% | |
| ! | GGTGGTGGTGTTGAATTTCA+AGG | + | chr2_4:3400416-3400435 | Msa0308950:CDS | 45.0% |
| ! | GGTGGTGTTGAATTTCAAGG+TGG | + | chr2_4:3400419-3400438 | Msa0308950:CDS | 45.0% |
| GTTGAATTTCAAGGTGGACG+TGG | + | chr2_4:3400425-3400444 | Msa0308950:CDS | 45.0% | |
| TGGACGTGGTGGTTTACAAT+TGG | + | chr2_4:3400439-3400458 | Msa0308950:CDS | 45.0% | |
| GGACGTGGTGGTTTACAATT+GGG | + | chr2_4:3400440-3400459 | Msa0308950:CDS | 45.0% | |
| ! | ACCATCACAGCATTTGGGAT+TGG | + | chr2_4:3400475-3400494 | Msa0308950:CDS | 45.0% |
| GGCTGTATCTGATTCCAACT+TGG | + | chr2_4:3400496-3400515 | Msa0308950:CDS | 45.0% | |
| AGCAGCAAACATACCCAAGT+TGG | - | chr2_4:3400513-3400532 | None:intergenic | 45.0% | |
| ! | CCACTCTCATCATTAGGTTG+AGG | - | chr2_4:3400641-3400660 | None:intergenic | 45.0% |
| CCTCAACCTAATGATGAGAG+TGG | + | chr2_4:3400638-3400657 | Msa0308950:CDS | 45.0% | |
| !! | GATTCTTGTTGTTGGTGGTG+GGG | - | chr2_4:3399195-3399214 | None:intergenic | 45.0% |
| TTCTCATCATCAGCAGCTTG+TGG | + | chr2_4:3399230-3399249 | Msa0308950:CDS | 45.0% | |
| ! | TTGTGGTCCCTTTTGATGGA+AGG | + | chr2_4:3399247-3399266 | Msa0308950:CDS | 45.0% |
| GTGATGGCCTTCCATCAAAA+GGG | - | chr2_4:3399257-3399276 | None:intergenic | 45.0% | |
| GAGCCCATAATGAAAGGTGA+TGG | - | chr2_4:3399273-3399292 | None:intergenic | 45.0% | |
| GAGATGGAGCCCATAATGAA+AGG | - | chr2_4:3399279-3399298 | None:intergenic | 45.0% | |
| GAGGGAGAAGAGTTTGAAGA+AGG | - | chr2_4:3399312-3399331 | None:intergenic | 45.0% | |
| !! | GCATCAATGAGGTGTTGAGT+GGG | - | chr2_4:3399375-3399394 | None:intergenic | 45.0% |
| !! | AGCATCAATGAGGTGTTGAG+TGG | - | chr2_4:3399376-3399395 | None:intergenic | 45.0% |
| TTGGATACATCTGGAAGAGG+AGG | - | chr2_4:3399426-3399445 | None:intergenic | 45.0% | |
| !! | TTTTGGAGGATTTGCAACCG+CGG | - | chr2_4:3399502-3399521 | None:intergenic | 45.0% |
| ! | AACTTTTGTGTGCCTGTCCT+TGG | - | chr2_4:3399532-3399551 | None:intergenic | 45.0% |
| GACAGGCACACAAAAGTTGA+CGG | + | chr2_4:3399534-3399553 | Msa0308950:CDS | 45.0% | |
| GGATTTGTGGCCTAATTCTC+TGG | - | chr2_4:3399616-3399635 | None:intergenic | 45.0% | |
| GAATTAGGCCACAAATCCGA+TGG | + | chr2_4:3399618-3399637 | Msa0308950:CDS | 45.0% | |
| GAAATTGGCTGGGATTGTTC+CGG | - | chr2_4:3399703-3399722 | None:intergenic | 45.0% | |
| !! | TGAGCGTTGAGAAATTGGCT+GGG | - | chr2_4:3399713-3399732 | None:intergenic | 45.0% |
| !! | TTGAGCGTTGAGAAATTGGC+TGG | - | chr2_4:3399714-3399733 | None:intergenic | 45.0% |
| !! | GACGTTGAGCGTTGAGAAAT+TGG | - | chr2_4:3399718-3399737 | None:intergenic | 45.0% |
| TGAGGATGAAACCCTAACAG+AGG | - | chr2_4:3399861-3399880 | None:intergenic | 45.0% | |
| !! | TGTTGTTGGTGGTGTTGATG+AGG | - | chr2_4:3399879-3399898 | None:intergenic | 45.0% |
| ! | GTTGTTGCTGTTGCTGTTGT+TGG | - | chr2_4:3399893-3399912 | None:intergenic | 45.0% |
| CAAAATGAAAGTGGCGGTGA+TGG | + | chr2_4:3400011-3400030 | Msa0308950:CDS | 45.0% | |
| GGAGCTTCTTCTTCTTCTGT+AGG | + | chr2_4:3400125-3400144 | Msa0308950:CDS | 45.0% | |
| ATTTGGATGGTACCAGTGAG+TGG | + | chr2_4:3400230-3400249 | Msa0308950:CDS | 45.0% | |
| GAAGCTGGAACATTGAACCT+TGG | - | chr2_4:3400386-3400405 | None:intergenic | 45.0% | |
| AGGTTCAATGTTCCAGCTTC+TGG | + | chr2_4:3400386-3400405 | Msa0308950:CDS | 45.0% | |
| TTCAATGTTCCAGCTTCTGG+TGG | + | chr2_4:3400389-3400408 | Msa0308950:CDS | 45.0% | |
| ! | GGTGGTGGTGTTGAATTTCA+AGG | + | chr2_4:3400416-3400435 | Msa0308950:CDS | 45.0% |
| ! | GGTGGTGTTGAATTTCAAGG+TGG | + | chr2_4:3400419-3400438 | Msa0308950:CDS | 45.0% |
| GTTGAATTTCAAGGTGGACG+TGG | + | chr2_4:3400425-3400444 | Msa0308950:CDS | 45.0% | |
| TGGACGTGGTGGTTTACAAT+TGG | + | chr2_4:3400439-3400458 | Msa0308950:CDS | 45.0% | |
| GGACGTGGTGGTTTACAATT+GGG | + | chr2_4:3400440-3400459 | Msa0308950:CDS | 45.0% | |
| ! | ACCATCACAGCATTTGGGAT+TGG | + | chr2_4:3400475-3400494 | Msa0308950:CDS | 45.0% |
| GGCTGTATCTGATTCCAACT+TGG | + | chr2_4:3400496-3400515 | Msa0308950:CDS | 45.0% | |
| AGCAGCAAACATACCCAAGT+TGG | - | chr2_4:3400513-3400532 | None:intergenic | 45.0% | |
| ! | CCACTCTCATCATTAGGTTG+AGG | - | chr2_4:3400641-3400660 | None:intergenic | 45.0% |
| CCTCAACCTAATGATGAGAG+TGG | + | chr2_4:3400638-3400657 | Msa0308950:CDS | 45.0% | |
| GGGATGGGGATGAATATTGG+TGG | - | chr2_4:3399175-3399194 | None:intergenic | 50.0% | |
| GTGGGGATGGGGATGAATAT+TGG | - | chr2_4:3399178-3399197 | None:intergenic | 50.0% | |
| !! | TTGTTGTTGGTGGTGGGGAT+GGG | - | chr2_4:3399190-3399209 | None:intergenic | 50.0% |
| ! | CAGCTTGTGGTCCCTTTTGA+TGG | + | chr2_4:3399243-3399262 | Msa0308950:CDS | 50.0% |
| ! | GGTGATGGCCTTCCATCAAA+AGG | - | chr2_4:3399258-3399277 | None:intergenic | 50.0% |
| ACACCTCATTGATGCTTCCC+TGG | + | chr2_4:3399380-3399399 | Msa0308950:CDS | 50.0% | |
| !! | TTGCCAGGGAAGCATCAATG+AGG | - | chr2_4:3399386-3399405 | None:intergenic | 50.0% |
| AGATCTGGTGGCAATTGCCA+GGG | - | chr2_4:3399400-3399419 | None:intergenic | 50.0% | |
| AAGAGGAGGTTCAGATCTGG+TGG | - | chr2_4:3399412-3399431 | None:intergenic | 50.0% | |
| TGGAAGAGGAGGTTCAGATC+TGG | - | chr2_4:3399415-3399434 | None:intergenic | 50.0% | |
| TCCTCCAAAACGATCCACCA+AGG | + | chr2_4:3399512-3399531 | Msa0308950:CDS | 50.0% | |
| !! | TCCTTGGTGGATCGTTTTGG+AGG | - | chr2_4:3399516-3399535 | None:intergenic | 50.0% |
| !! | CTGTCCTTGGTGGATCGTTT+TGG | - | chr2_4:3399519-3399538 | None:intergenic | 50.0% |
| CAAAACGATCCACCAAGGAC+AGG | + | chr2_4:3399517-3399536 | Msa0308950:CDS | 50.0% | |
| ! | TTTTGTGTGCCTGTCCTTGG+TGG | - | chr2_4:3399529-3399548 | None:intergenic | 50.0% |
| GGCCTAATTCTCTGGTCAAC+TGG | - | chr2_4:3399608-3399627 | None:intergenic | 50.0% | |
| ! | CTGAGAGGAGCTGATTTCGA+CGG | - | chr2_4:3399777-3399796 | None:intergenic | 50.0% |
| AGCGCGCTATGAAAACTGAG+AGG | - | chr2_4:3399792-3399811 | None:intergenic | 50.0% | |
| ! | TTTTCATAGCGCGCTTGCAC+TGG | + | chr2_4:3399797-3399816 | Msa0308950:CDS | 50.0% |
| TGGTACGCAGCTTCTTCGTA+AGG | - | chr2_4:3399831-3399850 | None:intergenic | 50.0% | |
| TACCAACACGCTCCTCTGTT+AGG | + | chr2_4:3399846-3399865 | Msa0308950:CDS | 50.0% | |
| ACCAACACGCTCCTCTGTTA+GGG | + | chr2_4:3399847-3399866 | Msa0308950:CDS | 50.0% | |
| ! | GTTGCTGTTGCTGTTGTTGG+TGG | - | chr2_4:3399890-3399909 | None:intergenic | 50.0% |
| CGCCCATATCATCCTGTTGT+TGG | - | chr2_4:3400076-3400095 | None:intergenic | 50.0% | |
| CAACAGGATGATATGGGCGA+AGG | + | chr2_4:3400077-3400096 | Msa0308950:CDS | 50.0% | |
| GATGATATGGGCGAAGGTGA+CGG | + | chr2_4:3400083-3400102 | Msa0308950:CDS | 50.0% | |
| ! | CGGGGAGTGGAAGTACAATT+TGG | + | chr2_4:3400213-3400232 | Msa0308950:CDS | 50.0% |
| AATGTTCCAGCTTCTGGTGG+TGG | + | chr2_4:3400392-3400411 | Msa0308950:CDS | 50.0% | |
| GAATTTCAAGGTGGACGTGG+TGG | + | chr2_4:3400428-3400447 | Msa0308950:CDS | 50.0% | |
| GCCAATCCCAAATGCTGTGA+TGG | - | chr2_4:3400479-3400498 | None:intergenic | 50.0% | |
| GGGATGGGGATGAATATTGG+TGG | - | chr2_4:3399175-3399194 | None:intergenic | 50.0% | |
| GTGGGGATGGGGATGAATAT+TGG | - | chr2_4:3399178-3399197 | None:intergenic | 50.0% | |
| !! | TTGTTGTTGGTGGTGGGGAT+GGG | - | chr2_4:3399190-3399209 | None:intergenic | 50.0% |
| ! | CAGCTTGTGGTCCCTTTTGA+TGG | + | chr2_4:3399243-3399262 | Msa0308950:CDS | 50.0% |
| ! | GGTGATGGCCTTCCATCAAA+AGG | - | chr2_4:3399258-3399277 | None:intergenic | 50.0% |
| ACACCTCATTGATGCTTCCC+TGG | + | chr2_4:3399380-3399399 | Msa0308950:CDS | 50.0% | |
| !! | TTGCCAGGGAAGCATCAATG+AGG | - | chr2_4:3399386-3399405 | None:intergenic | 50.0% |
| AGATCTGGTGGCAATTGCCA+GGG | - | chr2_4:3399400-3399419 | None:intergenic | 50.0% | |
| AAGAGGAGGTTCAGATCTGG+TGG | - | chr2_4:3399412-3399431 | None:intergenic | 50.0% | |
| TGGAAGAGGAGGTTCAGATC+TGG | - | chr2_4:3399415-3399434 | None:intergenic | 50.0% | |
| TCCTCCAAAACGATCCACCA+AGG | + | chr2_4:3399512-3399531 | Msa0308950:CDS | 50.0% | |
| !! | TCCTTGGTGGATCGTTTTGG+AGG | - | chr2_4:3399516-3399535 | None:intergenic | 50.0% |
| !! | CTGTCCTTGGTGGATCGTTT+TGG | - | chr2_4:3399519-3399538 | None:intergenic | 50.0% |
| CAAAACGATCCACCAAGGAC+AGG | + | chr2_4:3399517-3399536 | Msa0308950:CDS | 50.0% | |
| ! | TTTTGTGTGCCTGTCCTTGG+TGG | - | chr2_4:3399529-3399548 | None:intergenic | 50.0% |
| GGCCTAATTCTCTGGTCAAC+TGG | - | chr2_4:3399608-3399627 | None:intergenic | 50.0% | |
| ! | CTGAGAGGAGCTGATTTCGA+CGG | - | chr2_4:3399777-3399796 | None:intergenic | 50.0% |
| AGCGCGCTATGAAAACTGAG+AGG | - | chr2_4:3399792-3399811 | None:intergenic | 50.0% | |
| ! | TTTTCATAGCGCGCTTGCAC+TGG | + | chr2_4:3399797-3399816 | Msa0308950:CDS | 50.0% |
| TGGTACGCAGCTTCTTCGTA+AGG | - | chr2_4:3399831-3399850 | None:intergenic | 50.0% | |
| TACCAACACGCTCCTCTGTT+AGG | + | chr2_4:3399846-3399865 | Msa0308950:CDS | 50.0% | |
| ACCAACACGCTCCTCTGTTA+GGG | + | chr2_4:3399847-3399866 | Msa0308950:CDS | 50.0% | |
| ! | GTTGCTGTTGCTGTTGTTGG+TGG | - | chr2_4:3399890-3399909 | None:intergenic | 50.0% |
| CGCCCATATCATCCTGTTGT+TGG | - | chr2_4:3400076-3400095 | None:intergenic | 50.0% | |
| CAACAGGATGATATGGGCGA+AGG | + | chr2_4:3400077-3400096 | Msa0308950:CDS | 50.0% | |
| GATGATATGGGCGAAGGTGA+CGG | + | chr2_4:3400083-3400102 | Msa0308950:CDS | 50.0% | |
| ! | CGGGGAGTGGAAGTACAATT+TGG | + | chr2_4:3400213-3400232 | Msa0308950:CDS | 50.0% |
| AATGTTCCAGCTTCTGGTGG+TGG | + | chr2_4:3400392-3400411 | Msa0308950:CDS | 50.0% | |
| GAATTTCAAGGTGGACGTGG+TGG | + | chr2_4:3400428-3400447 | Msa0308950:CDS | 50.0% | |
| GCCAATCCCAAATGCTGTGA+TGG | - | chr2_4:3400479-3400498 | None:intergenic | 50.0% | |
| !! | TGTTGTTGGTGGTGGGGATG+GGG | - | chr2_4:3399189-3399208 | None:intergenic | 55.0% |
| !! | CTTGTTGTTGGTGGTGGGGA+TGG | - | chr2_4:3399191-3399210 | None:intergenic | 55.0% |
| CAGATCTGGTGGCAATTGCC+AGG | - | chr2_4:3399401-3399420 | None:intergenic | 55.0% | |
| AGGATTTGCAACCGCGGTGA+CGG | - | chr2_4:3399496-3399515 | None:intergenic | 55.0% | |
| CACACAAAAGTTGACGGCCG+TGG | + | chr2_4:3399540-3399559 | Msa0308950:CDS | 55.0% | |
| GCATTCGAATTCTCCGGCCA+CGG | - | chr2_4:3399560-3399579 | None:intergenic | 55.0% | |
| TGGCCGGAGAATTCGAATGC+CGG | + | chr2_4:3399560-3399579 | Msa0308950:CDS | 55.0% | |
| TCGCCGGCATTCGAATTCTC+CGG | - | chr2_4:3399566-3399585 | None:intergenic | 55.0% | |
| ACTCTTGCTGCACATGTCGC+CGG | - | chr2_4:3399582-3399601 | None:intergenic | 55.0% | |
| GCTTCTTCAACAAGCGGAGC+CGG | + | chr2_4:3399656-3399675 | Msa0308950:CDS | 55.0% | |
| AACGTCTCACTCCGTAGCAG+CGG | + | chr2_4:3399732-3399751 | Msa0308950:CDS | 55.0% | |
| ACAGTGTAGAGCCGCTGCTA+CGG | - | chr2_4:3399746-3399765 | None:intergenic | 55.0% | |
| ! | AGAGGAGCTGATTTCGACGG+CGG | - | chr2_4:3399774-3399793 | None:intergenic | 55.0% |
| ! | ACCCTAACAGAGGAGCGTGT+TGG | - | chr2_4:3399851-3399870 | None:intergenic | 55.0% |
| ! | GAAAGTGGCGGTGATGGTGA+TGG | + | chr2_4:3400017-3400036 | Msa0308950:CDS | 55.0% |
| TGTTACCGGCAACAGCCATG+TGG | + | chr2_4:3400183-3400202 | Msa0308950:CDS | 55.0% | |
| GTTACCGGCAACAGCCATGT+GGG | + | chr2_4:3400184-3400203 | Msa0308950:CDS | 55.0% | |
| ! | AACAGCCATGTGGGCTACAG+CGG | + | chr2_4:3400193-3400212 | Msa0308950:CDS | 55.0% |
| TGGATGGTACCAGTGAGTGG+TGG | + | chr2_4:3400233-3400252 | Msa0308950:CDS | 55.0% | |
| !! | TGTTGTTGGTGGTGGGGATG+GGG | - | chr2_4:3399189-3399208 | None:intergenic | 55.0% |
| !! | CTTGTTGTTGGTGGTGGGGA+TGG | - | chr2_4:3399191-3399210 | None:intergenic | 55.0% |
| CAGATCTGGTGGCAATTGCC+AGG | - | chr2_4:3399401-3399420 | None:intergenic | 55.0% | |
| AGGATTTGCAACCGCGGTGA+CGG | - | chr2_4:3399496-3399515 | None:intergenic | 55.0% | |
| CACACAAAAGTTGACGGCCG+TGG | + | chr2_4:3399540-3399559 | Msa0308950:CDS | 55.0% | |
| GCATTCGAATTCTCCGGCCA+CGG | - | chr2_4:3399560-3399579 | None:intergenic | 55.0% | |
| TGGCCGGAGAATTCGAATGC+CGG | + | chr2_4:3399560-3399579 | Msa0308950:CDS | 55.0% | |
| TCGCCGGCATTCGAATTCTC+CGG | - | chr2_4:3399566-3399585 | None:intergenic | 55.0% | |
| ACTCTTGCTGCACATGTCGC+CGG | - | chr2_4:3399582-3399601 | None:intergenic | 55.0% | |
| GCTTCTTCAACAAGCGGAGC+CGG | + | chr2_4:3399656-3399675 | Msa0308950:CDS | 55.0% | |
| AACGTCTCACTCCGTAGCAG+CGG | + | chr2_4:3399732-3399751 | Msa0308950:CDS | 55.0% | |
| ACAGTGTAGAGCCGCTGCTA+CGG | - | chr2_4:3399746-3399765 | None:intergenic | 55.0% | |
| ! | AGAGGAGCTGATTTCGACGG+CGG | - | chr2_4:3399774-3399793 | None:intergenic | 55.0% |
| ! | ACCCTAACAGAGGAGCGTGT+TGG | - | chr2_4:3399851-3399870 | None:intergenic | 55.0% |
| ! | GAAAGTGGCGGTGATGGTGA+TGG | + | chr2_4:3400017-3400036 | Msa0308950:CDS | 55.0% |
| TGTTACCGGCAACAGCCATG+TGG | + | chr2_4:3400183-3400202 | Msa0308950:CDS | 55.0% | |
| GTTACCGGCAACAGCCATGT+GGG | + | chr2_4:3400184-3400203 | Msa0308950:CDS | 55.0% | |
| ! | AACAGCCATGTGGGCTACAG+CGG | + | chr2_4:3400193-3400212 | Msa0308950:CDS | 55.0% |
| TGGATGGTACCAGTGAGTGG+TGG | + | chr2_4:3400233-3400252 | Msa0308950:CDS | 55.0% | |
| AACTTCAACCGCCGTCACCG+CGG | + | chr2_4:3399482-3399501 | Msa0308950:CDS | 60.0% | |
| ! | ATTTGCAACCGCGGTGACGG+CGG | - | chr2_4:3399493-3399512 | None:intergenic | 60.0% |
| CAAAAGTTGACGGCCGTGGC+CGG | + | chr2_4:3399544-3399563 | Msa0308950:CDS | 60.0% | |
| ! | GATATGGGCGAAGGTGACGG+TGG | + | chr2_4:3400086-3400105 | Msa0308950:CDS | 60.0% |
| GTAGCCCACATGGCTGTTGC+CGG | - | chr2_4:3400191-3400210 | None:intergenic | 60.0% | |
| ! | ACAGCCATGTGGGCTACAGC+GGG | + | chr2_4:3400194-3400213 | Msa0308950:CDS | 60.0% |
| GTTGCAGCACCACCACTCAC+TGG | - | chr2_4:3400245-3400264 | None:intergenic | 60.0% | |
| !! | GTTCCAGCTTCTGGTGGTGG+TGG | + | chr2_4:3400395-3400414 | Msa0308950:CDS | 60.0% |
| AACTTCAACCGCCGTCACCG+CGG | + | chr2_4:3399482-3399501 | Msa0308950:CDS | 60.0% | |
| ! | ATTTGCAACCGCGGTGACGG+CGG | - | chr2_4:3399493-3399512 | None:intergenic | 60.0% |
| CAAAAGTTGACGGCCGTGGC+CGG | + | chr2_4:3399544-3399563 | Msa0308950:CDS | 60.0% | |
| ! | GATATGGGCGAAGGTGACGG+TGG | + | chr2_4:3400086-3400105 | Msa0308950:CDS | 60.0% |
| GTAGCCCACATGGCTGTTGC+CGG | - | chr2_4:3400191-3400210 | None:intergenic | 60.0% | |
| ! | ACAGCCATGTGGGCTACAGC+GGG | + | chr2_4:3400194-3400213 | Msa0308950:CDS | 60.0% |
| GTTGCAGCACCACCACTCAC+TGG | - | chr2_4:3400245-3400264 | None:intergenic | 60.0% | |
| !! | GTTCCAGCTTCTGGTGGTGG+TGG | + | chr2_4:3400395-3400414 | Msa0308950:CDS | 60.0% |
| ATCATCGCTGCCACCGGCAC+CGG | + | chr2_4:3399681-3399700 | Msa0308950:CDS | 65.0% | |
| ! | TGGGATTGTTCCGGTGCCGG+TGG | - | chr2_4:3399694-3399713 | None:intergenic | 65.0% |
| GGCTGGGATTGTTCCGGTGC+CGG | - | chr2_4:3399697-3399716 | None:intergenic | 65.0% | |
| ! | ATGGGCGAAGGTGACGGTGG+TGG | + | chr2_4:3400089-3400108 | Msa0308950:CDS | 65.0% |
| !! | GAAGGTGACGGTGGTGGAGG+AGG | + | chr2_4:3400095-3400114 | Msa0308950:CDS | 65.0% |
| ! | CAGCCATGTGGGCTACAGCG+GGG | + | chr2_4:3400195-3400214 | Msa0308950:CDS | 65.0% |
| ACTCCCCGCTGTAGCCCACA+TGG | - | chr2_4:3400201-3400220 | None:intergenic | 65.0% | |
| ! | ATGTGGGCTACAGCGGGGAG+TGG | + | chr2_4:3400200-3400219 | Msa0308950:CDS | 65.0% |
| CCACCACCACCACCAGAAGC+TGG | - | chr2_4:3400401-3400420 | None:intergenic | 65.0% | |
| !! | CCAGCTTCTGGTGGTGGTGG+TGG | + | chr2_4:3400398-3400417 | Msa0308950:CDS | 65.0% |
| !! | GCTTCTGGTGGTGGTGGTGG+TGG | + | chr2_4:3400401-3400420 | Msa0308950:CDS | 65.0% |
| ATCATCGCTGCCACCGGCAC+CGG | + | chr2_4:3399681-3399700 | Msa0308950:CDS | 65.0% | |
| ! | TGGGATTGTTCCGGTGCCGG+TGG | - | chr2_4:3399694-3399713 | None:intergenic | 65.0% |
| GGCTGGGATTGTTCCGGTGC+CGG | - | chr2_4:3399697-3399716 | None:intergenic | 65.0% | |
| ! | ATGGGCGAAGGTGACGGTGG+TGG | + | chr2_4:3400089-3400108 | Msa0308950:CDS | 65.0% |
| !! | GAAGGTGACGGTGGTGGAGG+AGG | + | chr2_4:3400095-3400114 | Msa0308950:CDS | 65.0% |
| ! | CAGCCATGTGGGCTACAGCG+GGG | + | chr2_4:3400195-3400214 | Msa0308950:CDS | 65.0% |
| ACTCCCCGCTGTAGCCCACA+TGG | - | chr2_4:3400201-3400220 | None:intergenic | 65.0% | |
| ! | ATGTGGGCTACAGCGGGGAG+TGG | + | chr2_4:3400200-3400219 | Msa0308950:CDS | 65.0% |
| CCACCACCACCACCAGAAGC+TGG | - | chr2_4:3400401-3400420 | None:intergenic | 65.0% | |
| !! | CCAGCTTCTGGTGGTGGTGG+TGG | + | chr2_4:3400398-3400417 | Msa0308950:CDS | 65.0% |
| !! | GCTTCTGGTGGTGGTGGTGG+TGG | + | chr2_4:3400401-3400420 | Msa0308950:CDS | 65.0% |
| CCGGTGGCAGCGATGATCGC+CGG | - | chr2_4:3399678-3399697 | None:intergenic | 70.0% | |
| CCGGCGATCATCGCTGCCAC+CGG | + | chr2_4:3399675-3399694 | Msa0308950:CDS | 70.0% | |
| ! | GGCGAAGGTGACGGTGGTGG+AGG | + | chr2_4:3400092-3400111 | Msa0308950:CDS | 70.0% |
| !! | GGTGACGGTGGTGGAGGAGG+TGG | + | chr2_4:3400098-3400117 | Msa0308950:CDS | 70.0% |
| !! | GACGGTGGTGGAGGAGGTGG+TGG | + | chr2_4:3400101-3400120 | Msa0308950:CDS | 70.0% |
| !! | GGTGGTGGAGGAGGTGGTGG+TGG | + | chr2_4:3400104-3400123 | Msa0308950:CDS | 70.0% |
| CCGGTGGCAGCGATGATCGC+CGG | - | chr2_4:3399678-3399697 | None:intergenic | 70.0% | |
| CCGGCGATCATCGCTGCCAC+CGG | + | chr2_4:3399675-3399694 | Msa0308950:CDS | 70.0% | |
| ! | GGCGAAGGTGACGGTGGTGG+AGG | + | chr2_4:3400092-3400111 | Msa0308950:CDS | 70.0% |
| !! | GGTGACGGTGGTGGAGGAGG+TGG | + | chr2_4:3400098-3400117 | Msa0308950:CDS | 70.0% |
| !! | GACGGTGGTGGAGGAGGTGG+TGG | + | chr2_4:3400101-3400120 | Msa0308950:CDS | 70.0% |
| !! | GGTGGTGGAGGAGGTGGTGG+TGG | + | chr2_4:3400104-3400123 | Msa0308950:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 3399129 | 3400688 | 3399129 | ID=Msa0308950;Name=Msa0308950 |
| chr2_4 | mRNA | 3399129 | 3400688 | 3399129 | ID=Msa0308950-mRNA-1;Parent=Msa0308950;Name=Msa0308950-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|-1|0|1|-1|1|1|0|519 |
| chr2_4 | exon | 3399129 | 3400688 | 3399129 | ID=Msa0308950-mRNA-1:exon:1026;Parent=Msa0308950-mRNA-1 |
| chr2_4 | CDS | 3399129 | 3400688 | 3399129 | ID=Msa0308950-mRNA-1:cds;Parent=Msa0308950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
