Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0188380 | XP_003592967.1 | 90.562 | 445 | 25 | 2 | 17 | 448 | 49 | 489 | 0.0 | 806 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0188380 | sp|O49429|MORF1_ARATH | 43.985 | 266 | 115 | 8 | 15 | 257 | 1 | 255 | 2.21e-59 | 203 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0188380 | G7INP0 | 90.562 | 445 | 25 | 2 | 17 | 448 | 49 | 489 | 0.0 | 806 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0188380 | Msa0231130 | 0.858372 | 8.622444e-63 | -8.615850e-47 |
| Msa0188380 | Msa0270290 | 0.840674 | 7.543971e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0188380 | MtrunA17_Chr2g0277431 | 90.562 | 445 | 25 | 2 | 17 | 448 | 49 | 489 | 0.0 | 806 |
| Msa0188380 | MtrunA17_Chr2g0277451 | 74.219 | 128 | 30 | 1 | 1 | 128 | 1 | 125 | 1.09e-57 | 186 |
| Msa0188380 | MtrunA17_Chr2g0280611 | 53.968 | 126 | 57 | 1 | 83 | 208 | 78 | 202 | 2.93e-39 | 141 |
| Msa0188380 | MtrunA17_Chr4g0067641 | 54.464 | 112 | 50 | 1 | 83 | 194 | 80 | 190 | 1.25e-37 | 138 |
| Msa0188380 | MtrunA17_Chr1g0166671 | 45.223 | 157 | 69 | 4 | 55 | 198 | 35 | 187 | 3.16e-31 | 119 |
| Msa0188380 | MtrunA17_Chr1g0187251 | 49.558 | 113 | 56 | 1 | 86 | 198 | 94 | 205 | 2.68e-29 | 114 |
| Msa0188380 | MtrunA17_Chr2g0316311 | 45.133 | 113 | 60 | 2 | 83 | 195 | 86 | 196 | 3.04e-23 | 100 |
| Msa0188380 | MtrunA17_Chr1g0148081 | 32.653 | 343 | 171 | 15 | 6 | 322 | 5 | 313 | 4.34e-23 | 99.8 |
| Msa0188380 | MtrunA17_Chr6g0467031 | 37.037 | 108 | 58 | 3 | 89 | 191 | 72 | 174 | 2.07e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0188380 | AT4G20020.2 | 43.985 | 266 | 115 | 8 | 15 | 257 | 1 | 255 | 8.59e-61 | 204 |
| Msa0188380 | AT4G20020.1 | 43.985 | 266 | 115 | 8 | 15 | 257 | 1 | 255 | 2.24e-60 | 203 |
| Msa0188380 | AT5G44780.1 | 54.545 | 143 | 61 | 2 | 59 | 197 | 45 | 187 | 6.74e-42 | 158 |
| Msa0188380 | AT1G11430.1 | 60.909 | 110 | 42 | 1 | 83 | 192 | 78 | 186 | 3.07e-40 | 144 |
| Msa0188380 | AT3G06790.2 | 57.143 | 112 | 46 | 2 | 83 | 194 | 85 | 194 | 1.89e-36 | 134 |
| Msa0188380 | AT3G06790.1 | 57.143 | 112 | 46 | 2 | 83 | 194 | 85 | 194 | 2.83e-36 | 134 |
| Msa0188380 | AT2G35240.1 | 45.833 | 144 | 64 | 3 | 86 | 227 | 90 | 221 | 2.12e-31 | 120 |
| Msa0188380 | AT1G32580.1 | 43.791 | 153 | 72 | 3 | 86 | 236 | 87 | 227 | 8.03e-31 | 119 |
| Msa0188380 | AT3G15000.1 | 36.410 | 195 | 112 | 5 | 2 | 195 | 15 | 198 | 4.40e-25 | 106 |
| Msa0188380 | AT1G72530.1 | 38.318 | 107 | 64 | 2 | 86 | 192 | 48 | 152 | 1.99e-17 | 80.5 |
| Msa0188380 | AT1G72530.2 | 36.937 | 111 | 64 | 3 | 86 | 192 | 48 | 156 | 3.11e-15 | 74.3 |
| Msa0188380 | AT1G53260.2 | 46.774 | 62 | 33 | 0 | 134 | 195 | 2 | 63 | 1.02e-11 | 65.1 |
| Msa0188380 | AT1G53260.1 | 47.458 | 59 | 31 | 0 | 134 | 192 | 2 | 60 | 1.27e-11 | 65.5 |
Find 179 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCATGATTATTCCCCTTC+TGG | 0.152275 | 2_1:+3555002 | None:intergenic |
| ACAAATACCTTCAAATTTCT+TGG | 0.193516 | 2_1:+3556400 | None:intergenic |
| GCTGAATCAAACCGGATATT+TGG | 0.205342 | 2_1:+3555457 | None:intergenic |
| TATGCGCCGCAGCAAAATTT+TGG | 0.234811 | 2_1:-3555166 | Msa0188380:CDS |
| TTGAATTGTGTAAATTATAA+AGG | 0.249285 | 2_1:+3554460 | None:intergenic |
| GATGAAATAGAACCGGTAAT+TGG | 0.256818 | 2_1:+3556868 | None:intergenic |
| AGGTGGAGGTTTGTTATCTC+TGG | 0.258166 | 2_1:+3556657 | None:intergenic |
| GTGCTAAGGGTTTCAATATC+AGG | 0.262167 | 2_1:-3556603 | Msa0188380:intron |
| CGACCTCCACCAGTACAATT+TGG | 0.262627 | 2_1:-3555676 | Msa0188380:CDS |
| TCGCTTTCGGTCCCAATTAC+CGG | 0.272059 | 2_1:-3556880 | Msa0188380:CDS |
| CGGAGTTATCTTTGTGTTGC+CGG | 0.290339 | 2_1:-3555971 | Msa0188380:CDS |
| GGTTGGAGAGAGTAGGGTTT+TGG | 0.304529 | 2_1:+3556990 | None:intergenic |
| TGAACGCCGTCGACGATGTT+TGG | 0.306362 | 2_1:+3556823 | None:intergenic |
| AATCAACTTAGAATGCAATT+TGG | 0.312821 | 2_1:+3554691 | None:intergenic |
| GAACGCCGTCGACGATGTTT+GGG | 0.316646 | 2_1:+3556824 | None:intergenic |
| ATAACAAATAAGTTAGAGAT+AGG | 0.328503 | 2_1:+3554483 | None:intergenic |
| GGATTTCAAACCATCATATA+TGG | 0.330866 | 2_1:-3555041 | Msa0188380:CDS |
| AGCTACTGCGACTTCGCTTT+CGG | 0.360324 | 2_1:-3556893 | Msa0188380:CDS |
| GTGCTTGATCATAGCTCTGC+TGG | 0.368496 | 2_1:+3555416 | None:intergenic |
| GAGGGATTCCCTCGGTTGTT+TGG | 0.372916 | 2_1:+3555607 | None:intergenic |
| ATGCGCCACGGCAGAACTTT+GGG | 0.375645 | 2_1:-3555216 | Msa0188380:CDS |
| TTTCTTCTTTCTCCTTGTCC+TGG | 0.380327 | 2_1:+3555139 | None:intergenic |
| TGATAGTAGTTTGGATCTCC+TGG | 0.381637 | 2_1:-3554733 | Msa0188380:three_prime_UTR |
| AGCATGATTATTCCCCTTCT+GGG | 0.387365 | 2_1:+3555003 | None:intergenic |
| CCAAGGGATGGTAGAAACTA+TGG | 0.387810 | 2_1:-3555562 | Msa0188380:CDS |
| ATGTCAAATACGACGTCGTT+TGG | 0.388549 | 2_1:+3554421 | None:intergenic |
| CCTCCATACTGCTTGTTCAC+AGG | 0.391130 | 2_1:+3555934 | None:intergenic |
| TACAAAGAATGTGGTATGTA+AGG | 0.397330 | 2_1:-3554592 | Msa0188380:three_prime_UTR |
| TATGCGCCACGGCAGAACTT+TGG | 0.400286 | 2_1:-3555217 | Msa0188380:CDS |
| ATGAAATAGAACCGGTAATT+GGG | 0.400337 | 2_1:+3556869 | None:intergenic |
| TTTCCACCTCAACAGAACTA+TGG | 0.401446 | 2_1:-3555526 | Msa0188380:CDS |
| TGCTTGATCATAGCTCTGCT+GGG | 0.408969 | 2_1:+3555417 | None:intergenic |
| ACCGGATATTTGGTTGTTGT+TGG | 0.414885 | 2_1:+3555467 | None:intergenic |
| TTCTTTCTCCTTGTCCTGGA+GGG | 0.421334 | 2_1:+3555143 | None:intergenic |
| GGAATCCCTCTTACAACAAT+CGG | 0.421869 | 2_1:-3555594 | Msa0188380:CDS |
| GTACAATTTGGGAGAAATCT+AGG | 0.426083 | 2_1:-3555664 | Msa0188380:CDS |
| GACCTCCACCAGTACAATTT+GGG | 0.430347 | 2_1:-3555675 | Msa0188380:CDS |
| AGGACCATAGGTTTGCTGTT+TGG | 0.430424 | 2_1:+3555303 | None:intergenic |
| TATCCACCCAAACAAAACTA+TGG | 0.437816 | 2_1:-3555385 | Msa0188380:CDS |
| GACCCTGTGAACAAGCAGTA+TGG | 0.438673 | 2_1:-3555937 | Msa0188380:CDS |
| CGAATCATTTCTTCAGGTGG+AGG | 0.439284 | 2_1:+3556643 | None:intergenic |
| TATGCGCCACAGCAGAACTT+TGG | 0.449668 | 2_1:-3555115 | Msa0188380:CDS |
| GATTGCATGTCCTTGCCAAT+GGG | 0.450211 | 2_1:-3554672 | Msa0188380:three_prime_UTR |
| TTTCTTCTTTCTCCTTCTCC+CGG | 0.453717 | 2_1:+3555241 | None:intergenic |
| GAAGAGTCCAAGAAATTTGA+AGG | 0.456510 | 2_1:-3556407 | Msa0188380:intron |
| CAGGAGGCGGAAATCTTTGT+TGG | 0.457098 | 2_1:+3554963 | None:intergenic |
| AACTTCAGCAAGGGCCTCCC+AGG | 0.457480 | 2_1:+3554715 | None:intergenic |
| GCCAACAACAACCAAATATC+CGG | 0.458194 | 2_1:-3555468 | Msa0188380:CDS |
| TCAAATTCCTCCATATATGA+TGG | 0.460060 | 2_1:+3555031 | None:intergenic |
| TTTCCTCTTTCTCCCTGTCC+CGG | 0.461374 | 2_1:+3555088 | None:intergenic |
| TATCCACCACAGCAGAGCTT+TGG | 0.463958 | 2_1:-3555268 | Msa0188380:CDS |
| GAACTTTGGACCACCGGGAC+AGG | 0.464751 | 2_1:-3555101 | Msa0188380:CDS |
| CGAGGTTGATCTGAATGAAC+GGG | 0.468117 | 2_1:+3556798 | None:intergenic |
| ACAGCAGAGCTTTGGACCAC+CGG | 0.470038 | 2_1:-3555260 | Msa0188380:CDS |
| GGAATCCCGATTGTTGTAAG+AGG | 0.470092 | 2_1:+3555588 | None:intergenic |
| CAACAAAGATTTCCGCCTCC+TGG | 0.472277 | 2_1:-3554962 | Msa0188380:CDS |
| AGATTTCTCCCAAATTGTAC+TGG | 0.474613 | 2_1:+3555667 | None:intergenic |
| AATTGTACTGGTGGAGGTCG+AGG | 0.477720 | 2_1:+3555679 | None:intergenic |
| GATTCGATTATTGACCCCAT+TGG | 0.480674 | 2_1:+3554657 | None:intergenic |
| CGGCAGAACTTTGGGCCACC+GGG | 0.483926 | 2_1:-3555208 | Msa0188380:CDS |
| TTATGAAGAAACTTGTGCTA+AGG | 0.485239 | 2_1:-3556617 | Msa0188380:CDS |
| ACGGCAGAACTTTGGGCCAC+CGG | 0.489335 | 2_1:-3555209 | Msa0188380:CDS |
| TATGAAGAAACTTGTGCTAA+GGG | 0.489463 | 2_1:-3556616 | Msa0188380:CDS |
| ATGGTGTCAGGACCAATCTC+AGG | 0.489874 | 2_1:+3556730 | None:intergenic |
| GGTGGAGGTTTGTTATCTCT+GGG | 0.493016 | 2_1:+3556658 | None:intergenic |
| CCTTCGAAGAGGATGGTGTC+AGG | 0.493439 | 2_1:+3556718 | None:intergenic |
| CTCCATACTGCTTGTTCACA+GGG | 0.493888 | 2_1:+3555935 | None:intergenic |
| CCAGTAAAATTGCTAGGGCC+AGG | 0.494495 | 2_1:+3554944 | None:intergenic |
| CCACCGGGACAGGGAGAAAG+AGG | 0.494921 | 2_1:-3555091 | Msa0188380:CDS |
| CTTCTTTCTCCTTGTCCTGG+AGG | 0.495820 | 2_1:+3555142 | None:intergenic |
| TAACATAAGCAGGCAGCAGC+TGG | 0.496993 | 2_1:+3554563 | None:intergenic |
| CGAAGTCGCAGTAGCTGAGA+AGG | 0.498879 | 2_1:+3556900 | None:intergenic |
| CTCCCAAATTGTACTGGTGG+AGG | 0.499376 | 2_1:+3555673 | None:intergenic |
| TCAGAACTCAGTCCTGAGAT+TGG | 0.500163 | 2_1:-3556742 | Msa0188380:CDS |
| AGGAGGCGGAAATCTTTGTT+GGG | 0.503310 | 2_1:+3554964 | None:intergenic |
| ACAGCAGAACTTTGGACCAC+CGG | 0.505295 | 2_1:-3555107 | Msa0188380:CDS |
| GATAGTAGTTTGGATCTCCT+GGG | 0.505442 | 2_1:-3554732 | Msa0188380:three_prime_UTR |
| GGCGGTGGTTGGAGAGAGTA+GGG | 0.506484 | 2_1:+3556984 | None:intergenic |
| ACAGGGTCAATGTAAGAATC+CGG | 0.508563 | 2_1:+3555952 | None:intergenic |
| TGATTGCATGTCCTTGCCAA+TGG | 0.509203 | 2_1:-3554673 | Msa0188380:three_prime_UTR |
| AAAATGTGATGAAATAGAAC+CGG | 0.509305 | 2_1:+3556861 | None:intergenic |
| TCTCTCTTGTCTTCTCGCTA+CGG | 0.509897 | 2_1:-3556772 | Msa0188380:CDS |
| CTTCTTCTGTCTACTTCTCC+CGG | 0.510565 | 2_1:+3555190 | None:intergenic |
| TGAGAAGGAGTGGTGGAGGC+CGG | 0.512480 | 2_1:+3556915 | None:intergenic |
| TAACAAATAAGTTAGAGATA+GGG | 0.512918 | 2_1:+3554484 | None:intergenic |
| AAGGTTGCGATTACAATCAC+TGG | 0.516564 | 2_1:-3556699 | Msa0188380:CDS |
| TATTCCAAACAGCAAACCTA+TGG | 0.521162 | 2_1:-3555307 | Msa0188380:CDS |
| GAGAATTAGCGACGATGCCA+TGG | 0.522594 | 2_1:+3556963 | None:intergenic |
| GCTGCGATGCTGAATCAAAC+CGG | 0.524624 | 2_1:+3555449 | None:intergenic |
| CTGTGCCTAGTGAAGGTGGA+TGG | 0.529404 | 2_1:-3555063 | Msa0188380:CDS |
| GTGATCTCAGGCTACGGCGG+AGG | 0.532432 | 2_1:+3556941 | None:intergenic |
| GGTGGATACTGTGGCGAAGC+AGG | 0.533094 | 2_1:+3555283 | None:intergenic |
| CCATAGTTTCTACCATCCCT+TGG | 0.533589 | 2_1:+3555562 | None:intergenic |
| TGCAGTACAACTGTTTACAC+TGG | 0.536636 | 2_1:-3556452 | Msa0188380:CDS |
| ACCTCTCCAGTAAAATTGCT+AGG | 0.537861 | 2_1:+3554938 | None:intergenic |
| CATTGTCACATACAATGTCT+TGG | 0.540618 | 2_1:+3554514 | None:intergenic |
| AAACGAATCATTTCTTCAGG+TGG | 0.541590 | 2_1:+3556640 | None:intergenic |
| TAGCTGAGAAGGAGTGGTGG+AGG | 0.542761 | 2_1:+3556911 | None:intergenic |
| GAATCCCTCTTACAACAATC+GGG | 0.542891 | 2_1:-3555593 | Msa0188380:CDS |
| AGCTTTGGACCACCGGGAGA+AGG | 0.543753 | 2_1:-3555253 | Msa0188380:CDS |
| GGAATTTGAACAAGCCCAGA+AGG | 0.546452 | 2_1:-3555017 | Msa0188380:CDS |
| AAATCCCATCCACCTTCACT+AGG | 0.549954 | 2_1:+3555058 | None:intergenic |
| TGATCATAGCTCTGCTGGGG+TGG | 0.551769 | 2_1:+3555421 | None:intergenic |
| TAGCGACGATGCCATGGCGG+TGG | 0.552180 | 2_1:+3556969 | None:intergenic |
| GACGATGCCATGGCGGTGGT+TGG | 0.556448 | 2_1:+3556973 | None:intergenic |
| CTGTGGCGAAGCAGGACCAT+AGG | 0.556513 | 2_1:+3555291 | None:intergenic |
| GTGGAGGAATGTGTGATGCT+TGG | 0.556911 | 2_1:+3555503 | None:intergenic |
| GGTCCAAAGCTCTGCTGTGG+TGG | 0.557931 | 2_1:+3555265 | None:intergenic |
| TTTCTCCCAAATTGTACTGG+TGG | 0.558252 | 2_1:+3555670 | None:intergenic |
| ACAGGAGATCAGTACATTGA+AGG | 0.559699 | 2_1:-3555712 | Msa0188380:intron |
| TCGAGGTTGATCTGAATGAA+CGG | 0.562081 | 2_1:+3556797 | None:intergenic |
| GTTTCTACCATCCCTTGGCA+TGG | 0.563433 | 2_1:+3555567 | None:intergenic |
| TGGCGGTGGTTGGAGAGAGT+AGG | 0.564065 | 2_1:+3556983 | None:intergenic |
| TGTGCCTAGTGAAGGTGGAT+GGG | 0.564317 | 2_1:-3555062 | Msa0188380:CDS |
| GGCAACACAAAGATAACTCC+GGG | 0.564421 | 2_1:+3555973 | None:intergenic |
| CAGCAGAACTTTGGACCACC+GGG | 0.568755 | 2_1:-3555106 | Msa0188380:CDS |
| AACTCTGTGCCTAGTGAAGG+TGG | 0.569286 | 2_1:-3555067 | Msa0188380:CDS |
| CAGCAGAGCTTTGGACCACC+GGG | 0.574321 | 2_1:-3555259 | Msa0188380:CDS |
| CGGCAACACAAAGATAACTC+CGG | 0.575792 | 2_1:+3555972 | None:intergenic |
| GATTATTGACCCCATTGGCA+AGG | 0.576302 | 2_1:+3554662 | None:intergenic |
| GGAGGCCGGAGAGTGATCTC+AGG | 0.580525 | 2_1:+3556929 | None:intergenic |
| TCGCAGTAGCTGAGAAGGAG+TGG | 0.580953 | 2_1:+3556905 | None:intergenic |
| CCTGACACCATCCTCTTCGA+AGG | 0.582398 | 2_1:-3556718 | Msa0188380:CDS |
| TAATCATGCTGAAGAACAGA+CGG | 0.584349 | 2_1:-3554990 | Msa0188380:CDS |
| AAGTATATCTGACGATGCCA+TGG | 0.585244 | 2_1:+3557076 | None:intergenic |
| AACGCCGTCGACGATGTTTG+GGG | 0.586039 | 2_1:+3556825 | None:intergenic |
| GGAAACTCTGTGCCTAGTGA+AGG | 0.586295 | 2_1:-3555070 | Msa0188380:CDS |
| GAATCCCGATTGTTGTAAGA+GGG | 0.586300 | 2_1:+3555589 | None:intergenic |
| AACTTTGGACCACCGGGACA+GGG | 0.587378 | 2_1:-3555100 | Msa0188380:CDS |
| CCTCTTTCTCCCTGTCCCGG+TGG | 0.592801 | 2_1:+3555091 | None:intergenic |
| CCTCTCCAGTAAAATTGCTA+GGG | 0.592900 | 2_1:+3554939 | None:intergenic |
| CAATTTGGTAACTTCAGCAA+GGG | 0.593519 | 2_1:+3554706 | None:intergenic |
| TAGGAGGAAGACGAGACTAT+CGG | 0.594936 | 2_1:-3555645 | Msa0188380:CDS |
| CGGGATTCCATGCCAAGGGA+TGG | 0.595865 | 2_1:-3555574 | Msa0188380:CDS |
| AGCTATGATCAAGCACCACA+AGG | 0.596634 | 2_1:-3555409 | Msa0188380:CDS |
| CTCTGCTGTGGTGGATACTG+TGG | 0.600550 | 2_1:+3555274 | None:intergenic |
| CGGAGAGTGATCTCAGGCTA+CGG | 0.601292 | 2_1:+3556935 | None:intergenic |
| TGGCCATAGTTCTGTTGAGG+TGG | 0.603738 | 2_1:+3555523 | None:intergenic |
| GCTTGGCCATAGTTCTGTTG+AGG | 0.603846 | 2_1:+3555520 | None:intergenic |
| ATTGTACTGGTGGAGGTCGA+GGG | 0.609778 | 2_1:+3555680 | None:intergenic |
| AAATTGCTAGGGCCAGGAGG+CGG | 0.610340 | 2_1:+3554950 | None:intergenic |
| ATCAATTGCCAAACAACCGA+GGG | 0.610471 | 2_1:-3555615 | Msa0188380:CDS |
| CTTCTTTCTCCTTCTCCCGG+TGG | 0.610979 | 2_1:+3555244 | None:intergenic |
| TGTTGTAAGAGGGATTCCCT+CGG | 0.611597 | 2_1:+3555599 | None:intergenic |
| AATCATGCTGAAGAACAGAC+GGG | 0.612561 | 2_1:-3554989 | Msa0188380:CDS |
| GCAATTTGGTAACTTCAGCA+AGG | 0.614998 | 2_1:+3554705 | None:intergenic |
| ATCGCAACCTTCGAAGAGGA+TGG | 0.615614 | 2_1:+3556711 | None:intergenic |
| CAGTAGCTGAGAAGGAGTGG+TGG | 0.617757 | 2_1:+3556908 | None:intergenic |
| GGTGGTCCAAAGTTCTGCTG+TGG | 0.619499 | 2_1:+3555109 | None:intergenic |
| ACTCTCTCCAACCACCGCCA+TGG | 0.624268 | 2_1:-3556980 | Msa0188380:exon |
| GGTGGCCCAAAGTTCTGCCG+TGG | 0.626931 | 2_1:+3555211 | None:intergenic |
| TTTGTAATGAAAACAGAACA+TGG | 0.627428 | 2_1:+3554609 | None:intergenic |
| GGTGGTCCAAAGCTCTGCTG+TGG | 0.627905 | 2_1:+3555262 | None:intergenic |
| GAATTTGAACAAGCCCAGAA+GGG | 0.628457 | 2_1:-3555016 | Msa0188380:CDS |
| AGAAGACAAGAGAGAAATCG+AGG | 0.630277 | 2_1:+3556780 | None:intergenic |
| TTTCAAACCATCATATATGG+AGG | 0.632324 | 2_1:-3555038 | Msa0188380:CDS |
| ATTCCTCCACAACAAAACAT+TGG | 0.633304 | 2_1:-3555490 | Msa0188380:CDS |
| CAATCGGGATTCCATGCCAA+GGG | 0.634508 | 2_1:-3555578 | Msa0188380:CDS |
| ATTGCATGTCCTTGCCAATG+GGG | 0.637692 | 2_1:-3554671 | Msa0188380:three_prime_UTR |
| AATTTGAACAAGCCCAGAAG+GGG | 0.637787 | 2_1:-3555015 | Msa0188380:CDS |
| ACAATCGGGATTCCATGCCA+AGG | 0.637883 | 2_1:-3555579 | Msa0188380:CDS |
| AAAGAAGAAATTATGCGCCA+CGG | 0.637957 | 2_1:-3555228 | Msa0188380:CDS |
| AATCAATTGCCAAACAACCG+AGG | 0.644295 | 2_1:-3555616 | Msa0188380:CDS |
| CGCTTGATTGAAGTTCTGCG+AGG | 0.644978 | 2_1:+3555339 | None:intergenic |
| AAATCCCCAAACATCGTCGA+CGG | 0.651096 | 2_1:-3556829 | Msa0188380:CDS |
| GCTTGATCATAGCTCTGCTG+GGG | 0.651267 | 2_1:+3555418 | None:intergenic |
| TGTAATCGCAACCTTCGAAG+AGG | 0.655228 | 2_1:+3556707 | None:intergenic |
| TGTTTGGGTGGATACCCTTG+TGG | 0.664703 | 2_1:+3555394 | None:intergenic |
| GTAAAATTGCTAGGGCCAGG+AGG | 0.666157 | 2_1:+3554947 | None:intergenic |
| CCTGTGAACAAGCAGTATGG+AGG | 0.671051 | 2_1:-3555934 | Msa0188380:intron |
| GCTATGATCAAGCACCACAA+GGG | 0.671691 | 2_1:-3555408 | Msa0188380:CDS |
| AGTAGTTTGGATCTCCTGGG+AGG | 0.674182 | 2_1:-3554729 | Msa0188380:three_prime_UTR |
| CGTAGCCTGAGATCACTCTC+CGG | 0.691705 | 2_1:-3556934 | Msa0188380:CDS |
| CTTCTGTCTACTTCTCCCGG+TGG | 0.703848 | 2_1:+3555193 | None:intergenic |
| AGAGTGATCTCAGGCTACGG+CGG | 0.711287 | 2_1:+3556938 | None:intergenic |
| TATATCTGACGATGCCATGG+CGG | 0.714094 | 2_1:+3557079 | None:intergenic |
| AATTAGCGACGATGCCATGG+CGG | 0.721913 | 2_1:+3556966 | None:intergenic |
| CAATTTGGGAGAAATCTAGG+AGG | 0.741053 | 2_1:-3555661 | Msa0188380:CDS |
| ATCATGCTGAAGAACAGACG+GGG | 0.746376 | 2_1:-3554988 | Msa0188380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAGAAAGATTAATATTA+TGG | - | chr2_1:3554959-3554978 | Msa0188380:CDS | 10.0% |
| !!! | TTATACAATGTATCATTTTT+TGG | + | chr2_1:3555404-3555423 | None:intergenic | 15.0% |
| !! | TAACAAAAAAAAAATTGCAA+AGG | - | chr2_1:3556631-3556650 | Msa0188380:CDS | 15.0% |
| !! | TTGAATTGTGTAAATTATAA+AGG | + | chr2_1:3557044-3557063 | None:intergenic | 15.0% |
| !!! | ATTGTTTAATTTTGTATGTG+TGG | - | chr2_1:3554986-3555005 | Msa0188380:CDS | 20.0% |
| !!! | AATGCAAGCTATTTTATTTA+TGG | - | chr2_1:3555665-3555684 | Msa0188380:CDS | 20.0% |
| !!! | AATGCAAGCTATTTTATTTA+TGG | - | chr2_1:3555665-3555684 | Msa0188380:CDS | 20.0% |
| !!! | TTGTTTTTGTTATTTTATGC+AGG | - | chr2_1:3556737-3556756 | Msa0188380:CDS | 20.0% |
| !!! | TGTTTTTGTTATTTTATGCA+GGG | - | chr2_1:3556738-3556757 | Msa0188380:CDS | 20.0% |
| !!! | TTCAAAATTTTAACATAAGC+AGG | + | chr2_1:3556951-3556970 | None:intergenic | 20.0% |
| !!! | CTTATGTTAAAATTTTGAAC+TGG | - | chr2_1:3556952-3556971 | Msa0188380:CDS | 20.0% |
| !! | TAACAAATAAGTTAGAGATA+GGG | + | chr2_1:3557020-3557039 | None:intergenic | 20.0% |
| !! | ATAACAAATAAGTTAGAGAT+AGG | + | chr2_1:3557021-3557040 | None:intergenic | 20.0% |
| ! | AAAATGTGATGAAATAGAAC+CGG | + | chr2_1:3554643-3554662 | None:intergenic | 25.0% |
| ! | TAAAAACGAATCATTTCTTC+AGG | + | chr2_1:3554867-3554886 | None:intergenic | 25.0% |
| ! | ACAAATACCTTCAAATTTCT+TGG | + | chr2_1:3555104-3555123 | None:intergenic | 25.0% |
| ! | CAATGAAATCTAATCTAAGT+CGG | + | chr2_1:3555135-3555154 | None:intergenic | 25.0% |
| ! | CTTTCTAATCTATAACAAAC+AGG | + | chr2_1:3555171-3555190 | None:intergenic | 25.0% |
| ! | AATAGGTCAATGAAATCTAA+GGG | + | chr2_1:3555454-3555473 | None:intergenic | 25.0% |
| ! | AAATAGGTCAATGAAATCTA+AGG | + | chr2_1:3555455-3555474 | None:intergenic | 25.0% |
| ! | TCTATTGTCTCAACTAAAAT+AGG | + | chr2_1:3555471-3555490 | None:intergenic | 25.0% |
| !! | GAGACAATAGAAAATGATTT+TGG | - | chr2_1:3555480-3555499 | Msa0188380:CDS | 25.0% |
| ! | ATTTATTTGAGAGCAACTTT+CGG | - | chr2_1:3555758-3555777 | Msa0188380:intron | 25.0% |
| ! | AATCAACTTAGAATGCAATT+TGG | + | chr2_1:3556813-3556832 | None:intergenic | 25.0% |
| ! | TTTGTAATGAAAACAGAACA+TGG | + | chr2_1:3556895-3556914 | None:intergenic | 25.0% |
| !! | TGTTTTCATTACAAAGAATG+TGG | - | chr2_1:3556900-3556919 | Msa0188380:CDS | 25.0% |
| !!! | TTTGGTTTTGGTTTTGGTTT+TGG | + | chr2_1:3554496-3554515 | None:intergenic | 30.0% |
| ATGAAATAGAACCGGTAATT+GGG | + | chr2_1:3554635-3554654 | None:intergenic | 30.0% | |
| TTATGAAGAAACTTGTGCTA+AGG | - | chr2_1:3554884-3554903 | Msa0188380:intron | 30.0% | |
| TATGAAGAAACTTGTGCTAA+GGG | - | chr2_1:3554885-3554904 | Msa0188380:intron | 30.0% | |
| !!! | TGGTTTTTTTAGTGTTGAAG+AGG | - | chr2_1:3555006-3555025 | Msa0188380:CDS | 30.0% |
| GATTTCATTGACCTAGTTTA+TGG | - | chr2_1:3555145-3555164 | Msa0188380:CDS | 30.0% | |
| ATTCTTAAAGAAGCCACAAA+TGG | - | chr2_1:3555427-3555446 | Msa0188380:CDS | 30.0% | |
| TTCTTAAAGAAGCCACAAAT+GGG | - | chr2_1:3555428-3555447 | Msa0188380:CDS | 30.0% | |
| GGATTTCAAACCATCATATA+TGG | - | chr2_1:3556460-3556479 | Msa0188380:CDS | 30.0% | |
| TTTCAAACCATCATATATGG+AGG | - | chr2_1:3556463-3556482 | Msa0188380:CDS | 30.0% | |
| TCAAATTCCTCCATATATGA+TGG | + | chr2_1:3556473-3556492 | None:intergenic | 30.0% | |
| ! | AGAGGTATGATAGAATAGAA+TGG | - | chr2_1:3556580-3556599 | Msa0188380:intron | 30.0% |
| TACACATGATTCGTAAAACA+AGG | + | chr2_1:3556668-3556687 | None:intergenic | 30.0% | |
| !! | GGAAGATTTTGATAGTAGTT+TGG | - | chr2_1:3556759-3556778 | Msa0188380:CDS | 30.0% |
| TACAAAGAATGTGGTATGTA+AGG | - | chr2_1:3556909-3556928 | Msa0188380:CDS | 30.0% | |
| !!! | TTTTGGTTTTGGTGAGAGTA+GGG | + | chr2_1:3554485-3554504 | None:intergenic | 35.0% |
| !!! | TAGGGTTTTGGTTTTGGTTT+TGG | + | chr2_1:3554502-3554521 | None:intergenic | 35.0% |
| GATGAAATAGAACCGGTAAT+TGG | + | chr2_1:3554636-3554655 | None:intergenic | 35.0% | |
| AAACGAATCATTTCTTCAGG+TGG | + | chr2_1:3554864-3554883 | None:intergenic | 35.0% | |
| GAAGAGTCCAAGAAATTTGA+AGG | - | chr2_1:3555094-3555113 | Msa0188380:CDS | 35.0% | |
| TAACAAACAGGCCATAAACT+AGG | + | chr2_1:3555159-3555178 | None:intergenic | 35.0% | |
| AGATTTCTCCCAAATTGTAC+TGG | + | chr2_1:3555837-3555856 | None:intergenic | 35.0% | |
| GTACAATTTGGGAGAAATCT+AGG | - | chr2_1:3555837-3555856 | Msa0188380:intron | 35.0% | |
| ! | TGTTGAGGTGGAAAATTTTG+TGG | + | chr2_1:3555969-3555988 | None:intergenic | 35.0% |
| ATTCCTCCACAACAAAACAT+TGG | - | chr2_1:3556011-3556030 | Msa0188380:intron | 35.0% | |
| TATCCACCCAAACAAAACTA+TGG | - | chr2_1:3556116-3556135 | Msa0188380:intron | 35.0% | |
| !!! | GCTTGACCATAGTTTTGTTT+GGG | + | chr2_1:3556125-3556144 | None:intergenic | 35.0% |
| !!! | AGCTTGACCATAGTTTTGTT+TGG | + | chr2_1:3556126-3556145 | None:intergenic | 35.0% |
| !! | TGCTGTTTGGAATAGTTTTG+TGG | + | chr2_1:3556188-3556207 | None:intergenic | 35.0% |
| TATTCCAAACAGCAAACCTA+TGG | - | chr2_1:3556194-3556213 | Msa0188380:intron | 35.0% | |
| AAAGAAGAAATTATGCGCCA+CGG | - | chr2_1:3556273-3556292 | Msa0188380:intron | 35.0% | |
| TAATCATGCTGAAGAACAGA+CGG | - | chr2_1:3556511-3556530 | Msa0188380:intron | 35.0% | |
| CGAATCATGTGTACTGTAAA+TGG | - | chr2_1:3556675-3556694 | Msa0188380:CDS | 35.0% | |
| ! | CAATTTGGTAACTTCAGCAA+GGG | + | chr2_1:3556798-3556817 | None:intergenic | 35.0% |
| CATTGTCACATACAATGTCT+TGG | + | chr2_1:3556990-3557009 | None:intergenic | 35.0% | |
| AAGTATATCTGACGATGCCA+TGG | + | chr2_1:3554428-3554447 | None:intergenic | 40.0% | |
| !!! | GTTTTGGTTTTGGTGAGAGT+AGG | + | chr2_1:3554486-3554505 | None:intergenic | 40.0% |
| !!! | AGAGAGTAGGGTTTTGGTTT+TGG | + | chr2_1:3554508-3554527 | None:intergenic | 40.0% |
| ! | TCGAGGTTGATCTGAATGAA+CGG | + | chr2_1:3554707-3554726 | None:intergenic | 40.0% |
| AGAAGACAAGAGAGAAATCG+AGG | + | chr2_1:3554724-3554743 | None:intergenic | 40.0% | |
| AAGGTTGCGATTACAATCAC+TGG | - | chr2_1:3554802-3554821 | Msa0188380:intron | 40.0% | |
| GTGCTAAGGGTTTCAATATC+AGG | - | chr2_1:3554898-3554917 | Msa0188380:intron | 40.0% | |
| TGCAGTACAACTGTTTACAC+TGG | - | chr2_1:3555049-3555068 | Msa0188380:CDS | 40.0% | |
| ACAGGGTCAATGTAAGAATC+CGG | + | chr2_1:3555552-3555571 | None:intergenic | 40.0% | |
| ACAGGAGATCAGTACATTGA+AGG | - | chr2_1:3555789-3555808 | Msa0188380:intron | 40.0% | |
| TTTCTCCCAAATTGTACTGG+TGG | + | chr2_1:3555834-3555853 | None:intergenic | 40.0% | |
| CAATTTGGGAGAAATCTAGG+AGG | - | chr2_1:3555840-3555859 | Msa0188380:intron | 40.0% | |
| AATCAATTGCCAAACAACCG+AGG | - | chr2_1:3555885-3555904 | Msa0188380:intron | 40.0% | |
| ATCAATTGCCAAACAACCGA+GGG | - | chr2_1:3555886-3555905 | Msa0188380:intron | 40.0% | |
| GGAATCCCTCTTACAACAAT+CGG | - | chr2_1:3555907-3555926 | Msa0188380:intron | 40.0% | |
| GAATCCCTCTTACAACAATC+GGG | - | chr2_1:3555908-3555927 | Msa0188380:intron | 40.0% | |
| GAATCCCGATTGTTGTAAGA+GGG | + | chr2_1:3555915-3555934 | None:intergenic | 40.0% | |
| ! | TGAGGTGGAAAATTTTGTGG+AGG | + | chr2_1:3555966-3555985 | None:intergenic | 40.0% |
| TTTCCACCTCAACAGAACTA+TGG | - | chr2_1:3555975-3555994 | Msa0188380:CDS | 40.0% | |
| !! | TGTTGGCCAATGTTTTGTTG+TGG | + | chr2_1:3556020-3556039 | None:intergenic | 40.0% |
| GCCAACAACAACCAAATATC+CGG | - | chr2_1:3556033-3556052 | Msa0188380:intron | 40.0% | |
| ACCGGATATTTGGTTGTTGT+TGG | + | chr2_1:3556037-3556056 | None:intergenic | 40.0% | |
| GCTGAATCAAACCGGATATT+TGG | + | chr2_1:3556047-3556066 | None:intergenic | 40.0% | |
| !!! | TGACCATAGTTTTGTTTGGG+TGG | + | chr2_1:3556122-3556141 | None:intergenic | 40.0% |
| ! | TGCGAGGCTGAATAATTTTG+TGG | + | chr2_1:3556149-3556168 | None:intergenic | 40.0% |
| TTTCTTCTTTCTCCTTCTCC+CGG | + | chr2_1:3556263-3556282 | None:intergenic | 40.0% | |
| TTTCTTCTTTCTCCTTGTCC+TGG | + | chr2_1:3556365-3556384 | None:intergenic | 40.0% | |
| GAATTTGAACAAGCCCAGAA+GGG | - | chr2_1:3556485-3556504 | Msa0188380:CDS | 40.0% | |
| AATTTGAACAAGCCCAGAAG+GGG | - | chr2_1:3556486-3556505 | Msa0188380:CDS | 40.0% | |
| AGCATGATTATTCCCCTTCT+GGG | + | chr2_1:3556501-3556520 | None:intergenic | 40.0% | |
| AATCATGCTGAAGAACAGAC+GGG | - | chr2_1:3556512-3556531 | Msa0188380:intron | 40.0% | |
| CCTCTCCAGTAAAATTGCTA+GGG | + | chr2_1:3556565-3556584 | None:intergenic | 40.0% | |
| ACCTCTCCAGTAAAATTGCT+AGG | + | chr2_1:3556566-3556585 | None:intergenic | 40.0% | |
| TGATAGTAGTTTGGATCTCC+TGG | - | chr2_1:3556768-3556787 | Msa0188380:CDS | 40.0% | |
| GATAGTAGTTTGGATCTCCT+GGG | - | chr2_1:3556769-3556788 | Msa0188380:CDS | 40.0% | |
| ! | GCAATTTGGTAACTTCAGCA+AGG | + | chr2_1:3556799-3556818 | None:intergenic | 40.0% |
| GATTCGATTATTGACCCCAT+TGG | + | chr2_1:3556847-3556866 | None:intergenic | 40.0% | |
| !!! | GAGTAGGGTTTTGAGAAGCT+TGG | + | chr2_1:3554470-3554489 | None:intergenic | 45.0% |
| AAATCCCCAAACATCGTCGA+CGG | - | chr2_1:3554672-3554691 | Msa0188380:three_prime_UTR | 45.0% | |
| ! | CGAGGTTGATCTGAATGAAC+GGG | + | chr2_1:3554706-3554725 | None:intergenic | 45.0% |
| TCTCTCTTGTCTTCTCGCTA+CGG | - | chr2_1:3554729-3554748 | Msa0188380:three_prime_UTR | 45.0% | |
| TCAGAACTCAGTCCTGAGAT+TGG | - | chr2_1:3554759-3554778 | Msa0188380:intron | 45.0% | |
| TGTAATCGCAACCTTCGAAG+AGG | + | chr2_1:3554797-3554816 | None:intergenic | 45.0% | |
| !! | GGTGGAGGTTTGTTATCTCT+GGG | + | chr2_1:3554846-3554865 | None:intergenic | 45.0% |
| !! | AGGTGGAGGTTTGTTATCTC+TGG | + | chr2_1:3554847-3554866 | None:intergenic | 45.0% |
| CGAATCATTTCTTCAGGTGG+AGG | + | chr2_1:3554861-3554880 | None:intergenic | 45.0% | |
| GAAATCTAAGGGCCCATTTG+TGG | + | chr2_1:3555443-3555462 | None:intergenic | 45.0% | |
| ! | GGATTGTTGTGCTTTTCGAC+AGG | - | chr2_1:3555501-3555520 | Msa0188380:CDS | 45.0% |
| GGCAACACAAAGATAACTCC+GGG | + | chr2_1:3555531-3555550 | None:intergenic | 45.0% | |
| CGGCAACACAAAGATAACTC+CGG | + | chr2_1:3555532-3555551 | None:intergenic | 45.0% | |
| CGGAGTTATCTTTGTGTTGC+CGG | - | chr2_1:3555530-3555549 | Msa0188380:CDS | 45.0% | |
| CTCCATACTGCTTGTTCACA+GGG | + | chr2_1:3555569-3555588 | None:intergenic | 45.0% | |
| ATTTATCGTCTCTCGCGTTC+TGG | - | chr2_1:3555608-3555627 | Msa0188380:CDS | 45.0% | |
| ! | CAACTTTCGGTGTGTGATAC+AGG | - | chr2_1:3555771-3555790 | Msa0188380:intron | 45.0% |
| GACCTCCACCAGTACAATTT+GGG | - | chr2_1:3555826-3555845 | Msa0188380:intron | 45.0% | |
| TAGGAGGAAGACGAGACTAT+CGG | - | chr2_1:3555856-3555875 | Msa0188380:intron | 45.0% | |
| TGTTGTAAGAGGGATTCCCT+CGG | + | chr2_1:3555905-3555924 | None:intergenic | 45.0% | |
| GGAATCCCGATTGTTGTAAG+AGG | + | chr2_1:3555916-3555935 | None:intergenic | 45.0% | |
| CCATAGTTTCTACCATCCCT+TGG | + | chr2_1:3555942-3555961 | None:intergenic | 45.0% | |
| CCAAGGGATGGTAGAAACTA+TGG | - | chr2_1:3555939-3555958 | Msa0188380:CDS | 45.0% | |
| !! | TGGCCAATGTTTTGTTGTGG+AGG | + | chr2_1:3556017-3556036 | None:intergenic | 45.0% |
| ! | TGCTTGATCATAGCTCTGCT+GGG | + | chr2_1:3556087-3556106 | None:intergenic | 45.0% |
| AGCTATGATCAAGCACCACA+AGG | - | chr2_1:3556092-3556111 | Msa0188380:intron | 45.0% | |
| GCTATGATCAAGCACCACAA+GGG | - | chr2_1:3556093-3556112 | Msa0188380:intron | 45.0% | |
| !! | AGGACCATAGGTTTGCTGTT+TGG | + | chr2_1:3556201-3556220 | None:intergenic | 45.0% |
| CTTCTTCTGTCTACTTCTCC+CGG | + | chr2_1:3556314-3556333 | None:intergenic | 45.0% | |
| ! | TATGCGCCGCAGCAAAATTT+TGG | - | chr2_1:3556335-3556354 | Msa0188380:intron | 45.0% |
| TTCTTTCTCCTTGTCCTGGA+GGG | + | chr2_1:3556361-3556380 | None:intergenic | 45.0% | |
| AAATCCCATCCACCTTCACT+AGG | + | chr2_1:3556446-3556465 | None:intergenic | 45.0% | |
| GGAATTTGAACAAGCCCAGA+AGG | - | chr2_1:3556484-3556503 | Msa0188380:CDS | 45.0% | |
| CAGCATGATTATTCCCCTTC+TGG | + | chr2_1:3556502-3556521 | None:intergenic | 45.0% | |
| ATCATGCTGAAGAACAGACG+GGG | - | chr2_1:3556513-3556532 | Msa0188380:intron | 45.0% | |
| AGGAGGCGGAAATCTTTGTT+GGG | + | chr2_1:3556540-3556559 | None:intergenic | 45.0% | |
| ! | CCCTAGCAATTTTACTGGAG+AGG | - | chr2_1:3556562-3556581 | Msa0188380:intron | 45.0% |
| TGATTGCATGTCCTTGCCAA+TGG | - | chr2_1:3556828-3556847 | Msa0188380:CDS | 45.0% | |
| GATTGCATGTCCTTGCCAAT+GGG | - | chr2_1:3556829-3556848 | Msa0188380:CDS | 45.0% | |
| ATTGCATGTCCTTGCCAATG+GGG | - | chr2_1:3556830-3556849 | Msa0188380:CDS | 45.0% | |
| GATTATTGACCCCATTGGCA+AGG | + | chr2_1:3556842-3556861 | None:intergenic | 45.0% | |
| !!! | ATAAATTAAAAAAGTAATTT+TGG | - | chr2_1:3555287-3555306 | Msa0188380:CDS | 5.0% |
| ! | GGTTGGAGAGAGTAGGGTTT+TGG | + | chr2_1:3554514-3554533 | None:intergenic | 50.0% |
| AATTAGCGACGATGCCATGG+CGG | + | chr2_1:3554538-3554557 | None:intergenic | 50.0% | |
| GAGAATTAGCGACGATGCCA+TGG | + | chr2_1:3554541-3554560 | None:intergenic | 50.0% | |
| AGCTACTGCGACTTCGCTTT+CGG | - | chr2_1:3554608-3554627 | Msa0188380:three_prime_UTR | 50.0% | |
| TCGCTTTCGGTCCCAATTAC+CGG | - | chr2_1:3554621-3554640 | Msa0188380:three_prime_UTR | 50.0% | |
| ! | ATGGTGTCAGGACCAATCTC+AGG | + | chr2_1:3554774-3554793 | None:intergenic | 50.0% |
| ATCGCAACCTTCGAAGAGGA+TGG | + | chr2_1:3554793-3554812 | None:intergenic | 50.0% | |
| ! | TGCTTTTCGACAGGTTTGCC+CGG | - | chr2_1:3555510-3555529 | Msa0188380:CDS | 50.0% |
| GACCCTGTGAACAAGCAGTA+TGG | - | chr2_1:3555564-3555583 | Msa0188380:CDS | 50.0% | |
| CCTCCATACTGCTTGTTCAC+AGG | + | chr2_1:3555570-3555589 | None:intergenic | 50.0% | |
| CCTGTGAACAAGCAGTATGG+AGG | - | chr2_1:3555567-3555586 | Msa0188380:CDS | 50.0% | |
| ! | ATTGTACTGGTGGAGGTCGA+GGG | + | chr2_1:3555824-3555843 | None:intergenic | 50.0% |
| ! | AATTGTACTGGTGGAGGTCG+AGG | + | chr2_1:3555825-3555844 | None:intergenic | 50.0% |
| CGACCTCCACCAGTACAATT+TGG | - | chr2_1:3555825-3555844 | Msa0188380:intron | 50.0% | |
| ! | CTCCCAAATTGTACTGGTGG+AGG | + | chr2_1:3555831-3555850 | None:intergenic | 50.0% |
| ACAATCGGGATTCCATGCCA+AGG | - | chr2_1:3555922-3555941 | Msa0188380:intron | 50.0% | |
| CAATCGGGATTCCATGCCAA+GGG | - | chr2_1:3555923-3555942 | Msa0188380:intron | 50.0% | |
| GTTTCTACCATCCCTTGGCA+TGG | + | chr2_1:3555937-3555956 | None:intergenic | 50.0% | |
| ! | TGGCCATAGTTCTGTTGAGG+TGG | + | chr2_1:3555981-3556000 | None:intergenic | 50.0% |
| ! | GCTTGGCCATAGTTCTGTTG+AGG | + | chr2_1:3555984-3556003 | None:intergenic | 50.0% |
| GTGGAGGAATGTGTGATGCT+TGG | + | chr2_1:3556001-3556020 | None:intergenic | 50.0% | |
| GCTGCGATGCTGAATCAAAC+CGG | + | chr2_1:3556055-3556074 | None:intergenic | 50.0% | |
| ! | GCTTGATCATAGCTCTGCTG+GGG | + | chr2_1:3556086-3556105 | None:intergenic | 50.0% |
| ! | GTGCTTGATCATAGCTCTGC+TGG | + | chr2_1:3556088-3556107 | None:intergenic | 50.0% |
| TGTTTGGGTGGATACCCTTG+TGG | + | chr2_1:3556110-3556129 | None:intergenic | 50.0% | |
| CGCTTGATTGAAGTTCTGCG+AGG | + | chr2_1:3556165-3556184 | None:intergenic | 50.0% | |
| TATCCACCACAGCAGAGCTT+TGG | - | chr2_1:3556233-3556252 | Msa0188380:intron | 50.0% | |
| ! | GGAGGGCCAAAATTTTGCTG+CGG | + | chr2_1:3556344-3556363 | None:intergenic | 50.0% |
| !! | CAGCAAAATTTTGGCCCTCC+AGG | - | chr2_1:3556344-3556363 | Msa0188380:intron | 50.0% |
| !! | AATTTTGGCCCTCCAGGACA+AGG | - | chr2_1:3556350-3556369 | Msa0188380:intron | 50.0% |
| CTTCTTTCTCCTTGTCCTGG+AGG | + | chr2_1:3556362-3556381 | None:intergenic | 50.0% | |
| TATGCGCCACAGCAGAACTT+TGG | - | chr2_1:3556386-3556405 | Msa0188380:intron | 50.0% | |
| ACAGCAGAACTTTGGACCAC+CGG | - | chr2_1:3556394-3556413 | Msa0188380:intron | 50.0% | |
| TTTCCTCTTTCTCCCTGTCC+CGG | + | chr2_1:3556416-3556435 | None:intergenic | 50.0% | |
| GGAAACTCTGTGCCTAGTGA+AGG | - | chr2_1:3556431-3556450 | Msa0188380:CDS | 50.0% | |
| AACTCTGTGCCTAGTGAAGG+TGG | - | chr2_1:3556434-3556453 | Msa0188380:CDS | 50.0% | |
| TGTGCCTAGTGAAGGTGGAT+GGG | - | chr2_1:3556439-3556458 | Msa0188380:CDS | 50.0% | |
| CAGGAGGCGGAAATCTTTGT+TGG | + | chr2_1:3556541-3556560 | None:intergenic | 50.0% | |
| CAACAAAGATTTCCGCCTCC+TGG | - | chr2_1:3556539-3556558 | Msa0188380:intron | 50.0% | |
| GTAAAATTGCTAGGGCCAGG+AGG | + | chr2_1:3556557-3556576 | None:intergenic | 50.0% | |
| CCAGTAAAATTGCTAGGGCC+AGG | + | chr2_1:3556560-3556579 | None:intergenic | 50.0% | |
| ! | CCTGGCCCTAGCAATTTTAC+TGG | - | chr2_1:3556557-3556576 | Msa0188380:intron | 50.0% |
| AGTAGTTTGGATCTCCTGGG+AGG | - | chr2_1:3556772-3556791 | Msa0188380:CDS | 50.0% | |
| TAACATAAGCAGGCAGCAGC+TGG | + | chr2_1:3556941-3556960 | None:intergenic | 50.0% | |
| AGAGTGATCTCAGGCTACGG+CGG | + | chr2_1:3554566-3554585 | None:intergenic | 55.0% | |
| CGGAGAGTGATCTCAGGCTA+CGG | + | chr2_1:3554569-3554588 | None:intergenic | 55.0% | |
| CGTAGCCTGAGATCACTCTC+CGG | - | chr2_1:3554567-3554586 | Msa0188380:three_prime_UTR | 55.0% | |
| TAGCTGAGAAGGAGTGGTGG+AGG | + | chr2_1:3554593-3554612 | None:intergenic | 55.0% | |
| CAGTAGCTGAGAAGGAGTGG+TGG | + | chr2_1:3554596-3554615 | None:intergenic | 55.0% | |
| TCGCAGTAGCTGAGAAGGAG+TGG | + | chr2_1:3554599-3554618 | None:intergenic | 55.0% | |
| CGAAGTCGCAGTAGCTGAGA+AGG | + | chr2_1:3554604-3554623 | None:intergenic | 55.0% | |
| AACGCCGTCGACGATGTTTG+GGG | + | chr2_1:3554679-3554698 | None:intergenic | 55.0% | |
| GAACGCCGTCGACGATGTTT+GGG | + | chr2_1:3554680-3554699 | None:intergenic | 55.0% | |
| TGAACGCCGTCGACGATGTT+TGG | + | chr2_1:3554681-3554700 | None:intergenic | 55.0% | |
| CCTTCGAAGAGGATGGTGTC+AGG | + | chr2_1:3554786-3554805 | None:intergenic | 55.0% | |
| CCTGACACCATCCTCTTCGA+AGG | - | chr2_1:3554783-3554802 | Msa0188380:intron | 55.0% | |
| GAGGGATTCCCTCGGTTGTT+TGG | + | chr2_1:3555897-3555916 | None:intergenic | 55.0% | |
| ! | TGATCATAGCTCTGCTGGGG+TGG | + | chr2_1:3556083-3556102 | None:intergenic | 55.0% |
| !! | CTCTGCTGTGGTGGATACTG+TGG | + | chr2_1:3556230-3556249 | None:intergenic | 55.0% |
| !! | ACAGCAGAGCTTTGGACCAC+CGG | - | chr2_1:3556241-3556260 | Msa0188380:intron | 55.0% |
| CTTCTTTCTCCTTCTCCCGG+TGG | + | chr2_1:3556260-3556279 | None:intergenic | 55.0% | |
| TATGCGCCACGGCAGAACTT+TGG | - | chr2_1:3556284-3556303 | Msa0188380:intron | 55.0% | |
| ATGCGCCACGGCAGAACTTT+GGG | - | chr2_1:3556285-3556304 | Msa0188380:intron | 55.0% | |
| CTTCTGTCTACTTCTCCCGG+TGG | + | chr2_1:3556311-3556330 | None:intergenic | 55.0% | |
| GGTGGTCCAAAGTTCTGCTG+TGG | + | chr2_1:3556395-3556414 | None:intergenic | 55.0% | |
| CAGCAGAACTTTGGACCACC+GGG | - | chr2_1:3556395-3556414 | Msa0188380:intron | 55.0% | |
| AACTTTGGACCACCGGGACA+GGG | - | chr2_1:3556401-3556420 | Msa0188380:intron | 55.0% | |
| CTGTGCCTAGTGAAGGTGGA+TGG | - | chr2_1:3556438-3556457 | Msa0188380:CDS | 55.0% | |
| AAATTGCTAGGGCCAGGAGG+CGG | + | chr2_1:3556554-3556573 | None:intergenic | 55.0% | |
| GGCGGTGGTTGGAGAGAGTA+GGG | + | chr2_1:3554520-3554539 | None:intergenic | 60.0% | |
| TGGCGGTGGTTGGAGAGAGT+AGG | + | chr2_1:3554521-3554540 | None:intergenic | 60.0% | |
| ACTCTCTCCAACCACCGCCA+TGG | - | chr2_1:3554521-3554540 | Msa0188380:three_prime_UTR | 60.0% | |
| ! | TGAGAAGGAGTGGTGGAGGC+CGG | + | chr2_1:3554589-3554608 | None:intergenic | 60.0% |
| CGGGATTCCATGCCAAGGGA+TGG | - | chr2_1:3555927-3555946 | Msa0188380:intron | 60.0% | |
| CTGTGGCGAAGCAGGACCAT+AGG | + | chr2_1:3556213-3556232 | None:intergenic | 60.0% | |
| GGTGGATACTGTGGCGAAGC+AGG | + | chr2_1:3556221-3556240 | None:intergenic | 60.0% | |
| GGTCCAAAGCTCTGCTGTGG+TGG | + | chr2_1:3556239-3556258 | None:intergenic | 60.0% | |
| GGTGGTCCAAAGCTCTGCTG+TGG | + | chr2_1:3556242-3556261 | None:intergenic | 60.0% | |
| !! | CAGCAGAGCTTTGGACCACC+GGG | - | chr2_1:3556242-3556261 | Msa0188380:intron | 60.0% |
| !! | AGCTTTGGACCACCGGGAGA+AGG | - | chr2_1:3556248-3556267 | Msa0188380:intron | 60.0% |
| ACGGCAGAACTTTGGGCCAC+CGG | - | chr2_1:3556292-3556311 | Msa0188380:intron | 60.0% | |
| GAACTTTGGACCACCGGGAC+AGG | - | chr2_1:3556400-3556419 | Msa0188380:intron | 60.0% | |
| AACTTCAGCAAGGGCCTCCC+AGG | + | chr2_1:3556789-3556808 | None:intergenic | 60.0% | |
| GACGATGCCATGGCGGTGGT+TGG | + | chr2_1:3554531-3554550 | None:intergenic | 65.0% | |
| TAGCGACGATGCCATGGCGG+TGG | + | chr2_1:3554535-3554554 | None:intergenic | 65.0% | |
| GTGATCTCAGGCTACGGCGG+AGG | + | chr2_1:3554563-3554582 | None:intergenic | 65.0% | |
| GGAGGCCGGAGAGTGATCTC+AGG | + | chr2_1:3554575-3554594 | None:intergenic | 65.0% | |
| GGTGGCCCAAAGTTCTGCCG+TGG | + | chr2_1:3556293-3556312 | None:intergenic | 65.0% | |
| CGGCAGAACTTTGGGCCACC+GGG | - | chr2_1:3556293-3556312 | Msa0188380:intron | 65.0% | |
| CCTCTTTCTCCCTGTCCCGG+TGG | + | chr2_1:3556413-3556432 | None:intergenic | 65.0% | |
| CCACCGGGACAGGGAGAAAG+AGG | - | chr2_1:3556410-3556429 | Msa0188380:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 3554425 | 3557098 | 3554425 | ID=Msa0188380;Name=Msa0188380 |
| chr2_1 | mRNA | 3554425 | 3557098 | 3554425 | ID=Msa0188380-mRNA-1;Parent=Msa0188380;Name=Msa0188380-mRNA-1;_AED=0.01;_eAED=0.01;_QI=115|1|1|1|1|1|5|328|448 |
| chr2_1 | exon | 3554425 | 3554764 | 3554425 | ID=Msa0188380-mRNA-1:exon:1495;Parent=Msa0188380-mRNA-1 |
| chr2_1 | exon | 3554940 | 3555730 | 3554940 | ID=Msa0188380-mRNA-1:exon:1494;Parent=Msa0188380-mRNA-1 |
| chr2_1 | exon | 3555935 | 3556000 | 3555935 | ID=Msa0188380-mRNA-1:exon:1493;Parent=Msa0188380-mRNA-1 |
| chr2_1 | exon | 3556408 | 3556505 | 3556408 | ID=Msa0188380-mRNA-1:exon:1492;Parent=Msa0188380-mRNA-1 |
| chr2_1 | exon | 3556604 | 3557098 | 3556604 | ID=Msa0188380-mRNA-1:exon:1491;Parent=Msa0188380-mRNA-1 |
| chr2_1 | five_prime_UTR | 3556984 | 3557098 | 3556984 | ID=Msa0188380-mRNA-1:five_prime_utr;Parent=Msa0188380-mRNA-1 |
| chr2_1 | CDS | 3556604 | 3556983 | 3556604 | ID=Msa0188380-mRNA-1:cds;Parent=Msa0188380-mRNA-1 |
| chr2_1 | CDS | 3556408 | 3556505 | 3556408 | ID=Msa0188380-mRNA-1:cds;Parent=Msa0188380-mRNA-1 |
| chr2_1 | CDS | 3555935 | 3556000 | 3555935 | ID=Msa0188380-mRNA-1:cds;Parent=Msa0188380-mRNA-1 |
| chr2_1 | CDS | 3554940 | 3555730 | 3554940 | ID=Msa0188380-mRNA-1:cds;Parent=Msa0188380-mRNA-1 |
| chr2_1 | CDS | 3554753 | 3554764 | 3554753 | ID=Msa0188380-mRNA-1:cds;Parent=Msa0188380-mRNA-1 |
| chr2_1 | three_prime_UTR | 3554425 | 3554752 | 3554425 | ID=Msa0188380-mRNA-1:three_prime_utr;Parent=Msa0188380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
