Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0270290 | XP_003592967.1 | 90.787 | 445 | 24 | 2 | 17 | 448 | 49 | 489 | 0.0 | 807 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0270290 | sp|O49429|MORF1_ARATH | 44.361 | 266 | 114 | 8 | 15 | 257 | 1 | 255 | 1.59e-59 | 203 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0080510 | Msa0270290 | 0.816226 | 6.166974e-52 | -8.615850e-47 |
| Msa0173150 | Msa0270290 | 0.825302 | 5.048117e-54 | -8.615850e-47 |
| Msa0186060 | Msa0270290 | 0.822210 | 2.675803e-53 | -8.615850e-47 |
| Msa0188380 | Msa0270290 | 0.840674 | 7.543971e-58 | -8.615850e-47 |
| Msa0231130 | Msa0270290 | 0.906342 | 1.644349e-80 | -8.615850e-47 |
| Msa0270290 | Msa1087600 | 0.823731 | 1.182537e-53 | -8.615850e-47 |
| Msa0270290 | Msa1402130 | 0.828478 | 8.790731e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0270290 | MtrunA17_Chr2g0277431 | 90.787 | 445 | 24 | 2 | 17 | 448 | 49 | 489 | 0.0 | 807 |
| Msa0270290 | MtrunA17_Chr2g0277451 | 75.000 | 128 | 29 | 1 | 1 | 128 | 1 | 125 | 3.79e-57 | 185 |
| Msa0270290 | MtrunA17_Chr2g0280611 | 53.968 | 126 | 57 | 1 | 83 | 208 | 78 | 202 | 2.78e-39 | 141 |
| Msa0270290 | MtrunA17_Chr4g0067641 | 54.464 | 112 | 50 | 1 | 83 | 194 | 80 | 190 | 1.28e-37 | 138 |
| Msa0270290 | MtrunA17_Chr1g0166671 | 45.223 | 157 | 69 | 4 | 55 | 198 | 35 | 187 | 3.13e-31 | 119 |
| Msa0270290 | MtrunA17_Chr1g0187251 | 49.558 | 113 | 56 | 1 | 86 | 198 | 94 | 205 | 2.76e-29 | 114 |
| Msa0270290 | MtrunA17_Chr2g0316311 | 45.133 | 113 | 60 | 2 | 83 | 195 | 86 | 196 | 3.10e-23 | 100 |
| Msa0270290 | MtrunA17_Chr1g0148081 | 32.653 | 343 | 171 | 15 | 6 | 322 | 5 | 313 | 3.44e-23 | 99.8 |
| Msa0270290 | MtrunA17_Chr6g0467031 | 37.037 | 108 | 58 | 3 | 89 | 191 | 72 | 174 | 2.05e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0270290 | AT4G20020.2 | 44.361 | 266 | 114 | 8 | 15 | 257 | 1 | 255 | 5.81e-61 | 204 |
| Msa0270290 | AT4G20020.1 | 44.361 | 266 | 114 | 8 | 15 | 257 | 1 | 255 | 1.62e-60 | 203 |
| Msa0270290 | AT5G44780.1 | 54.545 | 143 | 61 | 2 | 59 | 197 | 45 | 187 | 6.24e-42 | 158 |
| Msa0270290 | AT1G11430.1 | 60.909 | 110 | 42 | 1 | 83 | 192 | 78 | 186 | 3.11e-40 | 144 |
| Msa0270290 | AT3G06790.2 | 57.143 | 112 | 46 | 2 | 83 | 194 | 85 | 194 | 1.85e-36 | 134 |
| Msa0270290 | AT3G06790.1 | 57.143 | 112 | 46 | 2 | 83 | 194 | 85 | 194 | 2.74e-36 | 134 |
| Msa0270290 | AT2G35240.1 | 45.833 | 144 | 64 | 3 | 86 | 227 | 90 | 221 | 2.12e-31 | 120 |
| Msa0270290 | AT1G32580.1 | 43.791 | 153 | 72 | 3 | 86 | 236 | 87 | 227 | 8.45e-31 | 119 |
| Msa0270290 | AT3G15000.1 | 36.410 | 195 | 112 | 5 | 2 | 195 | 15 | 198 | 3.77e-25 | 107 |
| Msa0270290 | AT1G72530.1 | 38.318 | 107 | 64 | 2 | 86 | 192 | 48 | 152 | 2.05e-17 | 80.5 |
| Msa0270290 | AT1G72530.2 | 36.937 | 111 | 64 | 3 | 86 | 192 | 48 | 156 | 2.99e-15 | 74.3 |
| Msa0270290 | AT1G53260.2 | 46.774 | 62 | 33 | 0 | 134 | 195 | 2 | 63 | 1.06e-11 | 65.1 |
| Msa0270290 | AT1G53260.1 | 47.458 | 59 | 31 | 0 | 134 | 192 | 2 | 60 | 1.25e-11 | 65.5 |
Find 176 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCATGATTATTCCCCTTC+TGG | 0.152275 | 2_3:-1565479 | None:intergenic |
| ACAAATACCTTCAAATTTCT+TGG | 0.193516 | 2_3:-1564144 | None:intergenic |
| GCTGAATCAAACCGGATATT+TGG | 0.205342 | 2_3:-1565024 | None:intergenic |
| TATGCGCCGCAGCAAAATTT+TGG | 0.234811 | 2_3:+1565315 | Msa0270290:CDS |
| TTGAATTGTGTAAATTATAA+AGG | 0.249285 | 2_3:-1566023 | None:intergenic |
| GATGAAATAGAACCGGTAAT+TGG | 0.256818 | 2_3:-1563676 | None:intergenic |
| AGGTGGAGGTTTGTTATCTC+TGG | 0.258166 | 2_3:-1563887 | None:intergenic |
| GTGCTAAGGGTTTCAATATC+AGG | 0.262167 | 2_3:+1563941 | Msa0270290:CDS |
| CGACCTCCACCAGTACAATT+TGG | 0.262627 | 2_3:+1564805 | Msa0270290:CDS |
| TCGCTTTCGGTCCCAATTAC+CGG | 0.272059 | 2_3:+1563664 | Msa0270290:CDS |
| CGGAGTTATCTTTGTGTTGC+CGG | 0.290339 | 2_3:+1564543 | Msa0270290:CDS |
| GGTTGGAGAGAGTAGGGTTT+TGG | 0.304529 | 2_3:-1563554 | None:intergenic |
| AATCAACTTAGAATGCAATT+TGG | 0.312821 | 2_3:-1565793 | None:intergenic |
| TGAACGCCGTCGACGACGTT+TGG | 0.320333 | 2_3:-1563721 | None:intergenic |
| ATAACAAATAAGTTAGAGAT+AGG | 0.328503 | 2_3:-1566000 | None:intergenic |
| GGATTTCAAACCATCATATA+TGG | 0.330866 | 2_3:+1565440 | Msa0270290:CDS |
| GAACGCCGTCGACGACGTTT+GGG | 0.334529 | 2_3:-1563720 | None:intergenic |
| AGCTACTGCGACTTCGCTTT+CGG | 0.360324 | 2_3:+1563651 | Msa0270290:CDS |
| GTGCTTGATCATAGCTCTGC+TGG | 0.368496 | 2_3:-1565065 | None:intergenic |
| GAGGGATTCCCTCGGTTGTT+TGG | 0.372916 | 2_3:-1564874 | None:intergenic |
| ATGCGCCACGGCAGAACTTT+GGG | 0.375645 | 2_3:+1565265 | Msa0270290:CDS |
| TGATAGTAGTTTGGATCTCC+TGG | 0.381637 | 2_3:+1565751 | Msa0270290:exon |
| AGCATGATTATTCCCCTTCT+GGG | 0.387365 | 2_3:-1565478 | None:intergenic |
| CCAAGGGATGGTAGAAACTA+TGG | 0.387810 | 2_3:+1564919 | Msa0270290:CDS |
| ATGTCAAATACGACGTCGTT+TGG | 0.388549 | 2_3:-1566062 | None:intergenic |
| TTCTTTCTCCTTGTCCTGGC+GGG | 0.390261 | 2_3:-1565338 | None:intergenic |
| CCTCCATACTGCTTGTTCAC+AGG | 0.391130 | 2_3:-1564580 | None:intergenic |
| TACAAAGAATGTGGTATGTA+AGG | 0.397330 | 2_3:+1565892 | Msa0270290:three_prime_UTR |
| TATGCGCCACGGCAGAACTT+TGG | 0.400286 | 2_3:+1565264 | Msa0270290:CDS |
| ATGAAATAGAACCGGTAATT+GGG | 0.400337 | 2_3:-1563675 | None:intergenic |
| TTTCCACCTCAACAGAACTA+TGG | 0.401446 | 2_3:+1564955 | Msa0270290:CDS |
| TGCTTGATCATAGCTCTGCT+GGG | 0.408969 | 2_3:-1565064 | None:intergenic |
| ACCGGATATTTGGTTGTTGT+TGG | 0.414885 | 2_3:-1565014 | None:intergenic |
| GGAATCCCTCTTACAACAAT+CGG | 0.421869 | 2_3:+1564887 | Msa0270290:CDS |
| GTACAATTTGGGAGAAATCT+AGG | 0.426083 | 2_3:+1564817 | Msa0270290:CDS |
| TTTCTTCTTTCTCCTTGTCC+TGG | 0.430267 | 2_3:-1565342 | None:intergenic |
| GACCTCCACCAGTACAATTT+GGG | 0.430347 | 2_3:+1564806 | Msa0270290:CDS |
| AGGACCATAGGTTTGCTGTT+TGG | 0.430424 | 2_3:-1565178 | None:intergenic |
| TATCCACCCAAACAAAACTA+TGG | 0.437816 | 2_3:+1565096 | Msa0270290:CDS |
| GACCCTGTGAACAAGCAGTA+TGG | 0.438673 | 2_3:+1564577 | Msa0270290:CDS |
| CGAATCATTTCTTCAGGTGG+AGG | 0.439284 | 2_3:-1563901 | None:intergenic |
| TATGCGCCACAGCAGAACTT+TGG | 0.449668 | 2_3:+1565366 | Msa0270290:CDS |
| GATTGCATGTCCTTGCCAAT+GGG | 0.450211 | 2_3:+1565812 | Msa0270290:three_prime_UTR |
| TTTCTTCTTTCTCCTTCTCC+CGG | 0.453717 | 2_3:-1565240 | None:intergenic |
| GAAGAGTCCAAGAAATTTGA+AGG | 0.456510 | 2_3:+1564137 | Msa0270290:CDS |
| CAGGAGGCGGAAATCTTTGT+TGG | 0.457098 | 2_3:-1565518 | None:intergenic |
| GCCAACAACAACCAAATATC+CGG | 0.458194 | 2_3:+1565013 | Msa0270290:CDS |
| TCAAATTCCTCCATATATGA+TGG | 0.460060 | 2_3:-1565450 | None:intergenic |
| TTTCCTCTTTCTCCCTGTCC+CGG | 0.461374 | 2_3:-1565393 | None:intergenic |
| TATCCACCACAGCAGAGCTT+TGG | 0.463958 | 2_3:+1565213 | Msa0270290:CDS |
| GAACTTTGGACCACCGGGAC+AGG | 0.464751 | 2_3:+1565380 | Msa0270290:CDS |
| CGAGGTTGATCTGAATGAAC+GGG | 0.468117 | 2_3:-1563746 | None:intergenic |
| ACAGCAGAGCTTTGGACCAC+CGG | 0.470038 | 2_3:+1565221 | Msa0270290:CDS |
| GGAATCCCGATTGTTGTAAG+AGG | 0.470092 | 2_3:-1564893 | None:intergenic |
| CAACAAAGATTTCCGCCTCC+TGG | 0.472277 | 2_3:+1565519 | Msa0270290:CDS |
| AGATTTCTCCCAAATTGTAC+TGG | 0.474613 | 2_3:-1564814 | None:intergenic |
| AATTGTACTGGTGGAGGTCG+AGG | 0.477720 | 2_3:-1564802 | None:intergenic |
| GATTCGATTATTGACCCCAT+TGG | 0.480674 | 2_3:-1565827 | None:intergenic |
| CGGCAGAACTTTGGGCCACC+GGG | 0.483926 | 2_3:+1565273 | Msa0270290:CDS |
| TTATGAAGAAACTTGTGCTA+AGG | 0.485239 | 2_3:+1563927 | Msa0270290:CDS |
| ACGGCAGAACTTTGGGCCAC+CGG | 0.489335 | 2_3:+1565272 | Msa0270290:CDS |
| TATGAAGAAACTTGTGCTAA+GGG | 0.489463 | 2_3:+1563928 | Msa0270290:CDS |
| ATGGTGTCAGGACCAATCTC+AGG | 0.489874 | 2_3:-1563814 | None:intergenic |
| GGTGGAGGTTTGTTATCTCT+GGG | 0.493016 | 2_3:-1563886 | None:intergenic |
| CCTTCGAAGAGGATGGTGTC+AGG | 0.493439 | 2_3:-1563826 | None:intergenic |
| CTCCATACTGCTTGTTCACA+GGG | 0.493888 | 2_3:-1564579 | None:intergenic |
| CCAGTAAAATTGCTAGGGCC+AGG | 0.494495 | 2_3:-1565537 | None:intergenic |
| CCACCGGGACAGGGAGAAAG+AGG | 0.494921 | 2_3:+1565390 | Msa0270290:CDS |
| CGAAGTCGCAGTAGCTGAGA+AGG | 0.498879 | 2_3:-1563644 | None:intergenic |
| CTCCCAAATTGTACTGGTGG+AGG | 0.499376 | 2_3:-1564808 | None:intergenic |
| TCAGAACTCAGTCCTGAGAT+TGG | 0.500163 | 2_3:+1563802 | Msa0270290:CDS |
| AGGAGGCGGAAATCTTTGTT+GGG | 0.503310 | 2_3:-1565517 | None:intergenic |
| ACAGCAGAACTTTGGACCAC+CGG | 0.505295 | 2_3:+1565374 | Msa0270290:CDS |
| GATAGTAGTTTGGATCTCCT+GGG | 0.505442 | 2_3:+1565752 | Msa0270290:exon |
| GGCGGTGGTTGGAGAGAGTA+GGG | 0.506484 | 2_3:-1563560 | None:intergenic |
| TTACATAAGCAGGCAGCAGC+TGG | 0.507777 | 2_3:-1565921 | None:intergenic |
| ACAGGGTCAATGTAAGAATC+CGG | 0.508563 | 2_3:-1564562 | None:intergenic |
| TGATTGCATGTCCTTGCCAA+TGG | 0.509203 | 2_3:+1565811 | Msa0270290:three_prime_UTR |
| AAAATGTGATGAAATAGAAC+CGG | 0.509305 | 2_3:-1563683 | None:intergenic |
| TCTCTCTTGTCTTCTCGCTA+CGG | 0.509897 | 2_3:+1563772 | Msa0270290:CDS |
| CTTCTTCTGTCTACTTCTCC+CGG | 0.510565 | 2_3:-1565291 | None:intergenic |
| TGAGAAGGAGTGGTGGAGGC+CGG | 0.512480 | 2_3:-1563629 | None:intergenic |
| TAACAAATAAGTTAGAGATA+GGG | 0.512918 | 2_3:-1565999 | None:intergenic |
| AAGGTTGCGATTACAATCAC+TGG | 0.516564 | 2_3:+1563845 | Msa0270290:CDS |
| TATTCCAAACAGCAAACCTA+TGG | 0.521162 | 2_3:+1565174 | Msa0270290:CDS |
| GAGAATTAGCGACGATGCCA+TGG | 0.522594 | 2_3:-1563581 | None:intergenic |
| GCTGCGATGCTGAATCAAAC+CGG | 0.524624 | 2_3:-1565032 | None:intergenic |
| CTGTGCCTAGTGAAGGTGGA+TGG | 0.529404 | 2_3:+1565418 | Msa0270290:CDS |
| GTGATCTCAGGCTACGGCGG+AGG | 0.532432 | 2_3:-1563603 | None:intergenic |
| GGTGGATACTGTGGCGAAGC+AGG | 0.533094 | 2_3:-1565198 | None:intergenic |
| CCATAGTTTCTACCATCCCT+TGG | 0.533589 | 2_3:-1564919 | None:intergenic |
| TGCAGTACAACTGTTTACAC+TGG | 0.536636 | 2_3:+1564092 | Msa0270290:CDS |
| ACCTCTCCAGTAAAATTGCT+AGG | 0.537861 | 2_3:-1565543 | None:intergenic |
| CATTGTCACATACAATGTCT+TGG | 0.540618 | 2_3:-1565969 | None:intergenic |
| AAACGAATCATTTCTTCAGG+TGG | 0.541590 | 2_3:-1563904 | None:intergenic |
| TAGCTGAGAAGGAGTGGTGG+AGG | 0.542761 | 2_3:-1563633 | None:intergenic |
| GAATCCCTCTTACAACAATC+GGG | 0.542891 | 2_3:+1564888 | Msa0270290:CDS |
| AGCTTTGGACCACCGGGAGA+AGG | 0.543753 | 2_3:+1565228 | Msa0270290:CDS |
| GGAATTTGAACAAGCCCAGA+AGG | 0.546452 | 2_3:+1565464 | Msa0270290:CDS |
| AAATCCCATCCACCTTCACT+AGG | 0.549954 | 2_3:-1565423 | None:intergenic |
| TGATCATAGCTCTGCTGGGG+TGG | 0.551769 | 2_3:-1565060 | None:intergenic |
| CTTCTTTCTCCTTGTCCTGG+CGG | 0.551794 | 2_3:-1565339 | None:intergenic |
| TAGCGACGATGCCATGGCGG+TGG | 0.552180 | 2_3:-1563575 | None:intergenic |
| GACGATGCCATGGCGGTGGT+TGG | 0.556448 | 2_3:-1563571 | None:intergenic |
| CTGTGGCGAAGCAGGACCAT+AGG | 0.556513 | 2_3:-1565190 | None:intergenic |
| GTGGAGGAATGTGTGATGCT+TGG | 0.556911 | 2_3:-1564978 | None:intergenic |
| GGTCCAAAGCTCTGCTGTGG+TGG | 0.557931 | 2_3:-1565216 | None:intergenic |
| TTTCTCCCAAATTGTACTGG+TGG | 0.558252 | 2_3:-1564811 | None:intergenic |
| ACAGGAGATCAGTACATTGA+AGG | 0.559699 | 2_3:+1564769 | Msa0270290:intron |
| TCGAGGTTGATCTGAATGAA+CGG | 0.562081 | 2_3:-1563747 | None:intergenic |
| AACTTCAGCAAGGACCTCCC+AGG | 0.563026 | 2_3:-1565769 | None:intergenic |
| AACGCCGTCGACGACGTTTG+GGG | 0.563351 | 2_3:-1563719 | None:intergenic |
| GTTTCTACCATCCCTTGGCA+TGG | 0.563433 | 2_3:-1564914 | None:intergenic |
| TGGCGGTGGTTGGAGAGAGT+AGG | 0.564065 | 2_3:-1563561 | None:intergenic |
| TGTGCCTAGTGAAGGTGGAT+GGG | 0.564317 | 2_3:+1565419 | Msa0270290:CDS |
| GGCAACACAAAGATAACTCC+GGG | 0.564421 | 2_3:-1564541 | None:intergenic |
| CAGCAGAACTTTGGACCACC+GGG | 0.568755 | 2_3:+1565375 | Msa0270290:CDS |
| AACTCTGTGCCTAGTGAAGG+TGG | 0.569286 | 2_3:+1565414 | Msa0270290:CDS |
| CAGCAGAGCTTTGGACCACC+GGG | 0.574321 | 2_3:+1565222 | Msa0270290:CDS |
| CGGCAACACAAAGATAACTC+CGG | 0.575792 | 2_3:-1564542 | None:intergenic |
| GATTATTGACCCCATTGGCA+AGG | 0.576302 | 2_3:-1565822 | None:intergenic |
| GGAGGCCGGAGAGTGATCTC+AGG | 0.580525 | 2_3:-1563615 | None:intergenic |
| TCGCAGTAGCTGAGAAGGAG+TGG | 0.580953 | 2_3:-1563639 | None:intergenic |
| CCTGACACCATCCTCTTCGA+AGG | 0.582398 | 2_3:+1563826 | Msa0270290:CDS |
| TAATCATGCTGAAGAACAGA+CGG | 0.584349 | 2_3:+1565491 | Msa0270290:CDS |
| GGAAACTCTGTGCCTAGTGA+AGG | 0.586295 | 2_3:+1565411 | Msa0270290:CDS |
| GAATCCCGATTGTTGTAAGA+GGG | 0.586300 | 2_3:-1564892 | None:intergenic |
| AACTTTGGACCACCGGGACA+GGG | 0.587378 | 2_3:+1565381 | Msa0270290:CDS |
| CCTCTTTCTCCCTGTCCCGG+TGG | 0.592801 | 2_3:-1565390 | None:intergenic |
| CCTCTCCAGTAAAATTGCTA+GGG | 0.592900 | 2_3:-1565542 | None:intergenic |
| TAGGAGGAAGACGAGACTAT+CGG | 0.594936 | 2_3:+1564836 | Msa0270290:CDS |
| CGGGATTCCATGCCAAGGGA+TGG | 0.595865 | 2_3:+1564907 | Msa0270290:CDS |
| AGCTATGATCAAGCACCACA+AGG | 0.596634 | 2_3:+1565072 | Msa0270290:CDS |
| CTCTGCTGTGGTGGATACTG+TGG | 0.600550 | 2_3:-1565207 | None:intergenic |
| CGGAGAGTGATCTCAGGCTA+CGG | 0.601292 | 2_3:-1563609 | None:intergenic |
| TGGCCATAGTTCTGTTGAGG+TGG | 0.603738 | 2_3:-1564958 | None:intergenic |
| GCTTGGCCATAGTTCTGTTG+AGG | 0.603846 | 2_3:-1564961 | None:intergenic |
| ATTGTACTGGTGGAGGTCGA+GGG | 0.609778 | 2_3:-1564801 | None:intergenic |
| AAATTGCTAGGGCCAGGAGG+CGG | 0.610340 | 2_3:-1565531 | None:intergenic |
| ATCAATTGCCAAACAACCGA+GGG | 0.610471 | 2_3:+1564866 | Msa0270290:CDS |
| CTTCTTTCTCCTTCTCCCGG+TGG | 0.610979 | 2_3:-1565237 | None:intergenic |
| TGTTGTAAGAGGGATTCCCT+CGG | 0.611597 | 2_3:-1564882 | None:intergenic |
| AATCATGCTGAAGAACAGAC+GGG | 0.612561 | 2_3:+1565492 | Msa0270290:CDS |
| AAATCCCCAAACGTCGTCGA+CGG | 0.615141 | 2_3:+1563715 | Msa0270290:CDS |
| ATCGCAACCTTCGAAGAGGA+TGG | 0.615614 | 2_3:-1563833 | None:intergenic |
| CAGTAGCTGAGAAGGAGTGG+TGG | 0.617757 | 2_3:-1563636 | None:intergenic |
| GGTGGTCCAAAGTTCTGCTG+TGG | 0.619499 | 2_3:-1565372 | None:intergenic |
| ACTCTCTCCAACCACCGCCA+TGG | 0.624268 | 2_3:+1563564 | Msa0270290:exon |
| GGTGGCCCAAAGTTCTGCCG+TGG | 0.626931 | 2_3:-1565270 | None:intergenic |
| TTTGTAATGAAAACAGAACA+TGG | 0.627428 | 2_3:-1565875 | None:intergenic |
| GGTGGTCCAAAGCTCTGCTG+TGG | 0.627905 | 2_3:-1565219 | None:intergenic |
| GAATTTGAACAAGCCCAGAA+GGG | 0.628457 | 2_3:+1565465 | Msa0270290:CDS |
| AGAAGACAAGAGAGAAATCG+AGG | 0.630277 | 2_3:-1563764 | None:intergenic |
| TTTCAAACCATCATATATGG+AGG | 0.632324 | 2_3:+1565443 | Msa0270290:CDS |
| ATTCCTCCACAACAAAACAT+TGG | 0.633304 | 2_3:+1564991 | Msa0270290:CDS |
| CAATCGGGATTCCATGCCAA+GGG | 0.634508 | 2_3:+1564903 | Msa0270290:CDS |
| ATTGCATGTCCTTGCCAATG+GGG | 0.637692 | 2_3:+1565813 | Msa0270290:three_prime_UTR |
| AATTTGAACAAGCCCAGAAG+GGG | 0.637787 | 2_3:+1565466 | Msa0270290:CDS |
| ACAATCGGGATTCCATGCCA+AGG | 0.637883 | 2_3:+1564902 | Msa0270290:CDS |
| AAAGAAGAAATTATGCGCCA+CGG | 0.637957 | 2_3:+1565253 | Msa0270290:CDS |
| AATCAATTGCCAAACAACCG+AGG | 0.644295 | 2_3:+1564865 | Msa0270290:CDS |
| CGCTTGATTGAAGTTCTGCG+AGG | 0.644978 | 2_3:-1565142 | None:intergenic |
| GCTTGATCATAGCTCTGCTG+GGG | 0.651267 | 2_3:-1565063 | None:intergenic |
| GCAATTTGGTAACTTCAGCA+AGG | 0.651404 | 2_3:-1565779 | None:intergenic |
| TGTAATCGCAACCTTCGAAG+AGG | 0.655228 | 2_3:-1563837 | None:intergenic |
| TGTTTGGGTGGATACCCTTG+TGG | 0.664703 | 2_3:-1565087 | None:intergenic |
| GTAAAATTGCTAGGGCCAGG+AGG | 0.666157 | 2_3:-1565534 | None:intergenic |
| CCTGTGAACAAGCAGTATGG+AGG | 0.671051 | 2_3:+1564580 | Msa0270290:CDS |
| GCTATGATCAAGCACCACAA+GGG | 0.671691 | 2_3:+1565073 | Msa0270290:CDS |
| AGTAGTTTGGATCTCCTGGG+AGG | 0.674854 | 2_3:+1565755 | Msa0270290:three_prime_UTR |
| CGTAGCCTGAGATCACTCTC+CGG | 0.691705 | 2_3:+1563610 | Msa0270290:CDS |
| CTTCTGTCTACTTCTCCCGG+TGG | 0.703848 | 2_3:-1565288 | None:intergenic |
| AGAGTGATCTCAGGCTACGG+CGG | 0.711287 | 2_3:-1563606 | None:intergenic |
| AATTAGCGACGATGCCATGG+CGG | 0.721913 | 2_3:-1563578 | None:intergenic |
| CAATTTGGGAGAAATCTAGG+AGG | 0.741053 | 2_3:+1564820 | Msa0270290:CDS |
| ATCATGCTGAAGAACAGACG+GGG | 0.746376 | 2_3:+1565493 | Msa0270290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAGAAAGATTAATATTA+TGG | + | chr2_3:1564002-1564021 | Msa0270290:intron | 10.0% |
| !!! | GTAAATTAAAAAAGTAATTT+TGG | + | chr2_3:1564300-1564319 | Msa0270290:intron | 10.0% |
| !!! | TTATACAATGTATCATTTTT+TGG | - | chr2_3:1564417-1564436 | None:intergenic | 15.0% |
| !! | AACAAAAAAAAAAATTGCAA+AGG | + | chr2_3:1565612-1565631 | Msa0270290:intron | 15.0% |
| !! | TTGAATTGTGTAAATTATAA+AGG | - | chr2_3:1566026-1566045 | None:intergenic | 15.0% |
| !!! | AATGCAAGCTATTTTATTTA+TGG | + | chr2_3:1564678-1564697 | Msa0270290:intron | 20.0% |
| !! | TTTATGGTTTCTTAAATACT+TGG | + | chr2_3:1564694-1564713 | Msa0270290:intron | 20.0% |
| !!! | TTGTTTTTGTTATTTTATGC+AGG | + | chr2_3:1565720-1565739 | Msa0270290:intron | 20.0% |
| !!! | TGTTTTTGTTATTTTATGCA+GGG | + | chr2_3:1565721-1565740 | Msa0270290:intron | 20.0% |
| !! | TAACAAATAAGTTAGAGATA+GGG | - | chr2_3:1566002-1566021 | None:intergenic | 20.0% |
| !! | ATAACAAATAAGTTAGAGAT+AGG | - | chr2_3:1566003-1566022 | None:intergenic | 20.0% |
| ! | AAAATGTGATGAAATAGAAC+CGG | - | chr2_3:1563686-1563705 | None:intergenic | 25.0% |
| ! | TAAAAACGAATCATTTCTTC+AGG | - | chr2_3:1563910-1563929 | None:intergenic | 25.0% |
| !!! | TGATTTTTTTAGTGTTGAAG+AGG | + | chr2_3:1564049-1564068 | Msa0270290:intron | 25.0% |
| ! | ACAAATACCTTCAAATTTCT+TGG | - | chr2_3:1564147-1564166 | None:intergenic | 25.0% |
| ! | CAATGAAATCTAATCTAAGT+CGG | - | chr2_3:1564178-1564197 | None:intergenic | 25.0% |
| ! | CTTTCTAATCTATAACAAAC+AGG | - | chr2_3:1564214-1564233 | None:intergenic | 25.0% |
| ! | AATAGGTCAATGAAATCTAA+GGG | - | chr2_3:1564467-1564486 | None:intergenic | 25.0% |
| ! | AAATAGGTCAATGAAATCTA+AGG | - | chr2_3:1564468-1564487 | None:intergenic | 25.0% |
| ! | TCTATTGTCTCAACTAAAAT+AGG | - | chr2_3:1564484-1564503 | None:intergenic | 25.0% |
| !! | GAGACAATAGAAAATGATTT+TGG | + | chr2_3:1564493-1564512 | Msa0270290:intron | 25.0% |
| ! | ATTTATTTGAGAGCAACTTT+CGG | + | chr2_3:1564738-1564757 | Msa0270290:intron | 25.0% |
| ! | AATCAACTTAGAATGCAATT+TGG | - | chr2_3:1565796-1565815 | None:intergenic | 25.0% |
| ! | TTTGTAATGAAAACAGAACA+TGG | - | chr2_3:1565878-1565897 | None:intergenic | 25.0% |
| !! | TGTTTTCATTACAAAGAATG+TGG | + | chr2_3:1565883-1565902 | Msa0270290:three_prime_UTR | 25.0% |
| !! | GTTCAAAATTTTACATAAGC+AGG | - | chr2_3:1565934-1565953 | None:intergenic | 25.0% |
| !! | GCTTATGTAAAATTTTGAAC+TGG | + | chr2_3:1565934-1565953 | Msa0270290:three_prime_UTR | 25.0% |
| ATGAAATAGAACCGGTAATT+GGG | - | chr2_3:1563678-1563697 | None:intergenic | 30.0% | |
| TTATGAAGAAACTTGTGCTA+AGG | + | chr2_3:1563927-1563946 | Msa0270290:CDS | 30.0% | |
| TATGAAGAAACTTGTGCTAA+GGG | + | chr2_3:1563928-1563947 | Msa0270290:CDS | 30.0% | |
| GATTTCATTGACCTAGTTTA+TGG | + | chr2_3:1564188-1564207 | Msa0270290:intron | 30.0% | |
| ATTCTTAAAGAAGCCACAAA+TGG | + | chr2_3:1564440-1564459 | Msa0270290:intron | 30.0% | |
| TTCTTAAAGAAGCCACAAAT+GGG | + | chr2_3:1564441-1564460 | Msa0270290:intron | 30.0% | |
| GGATTTCAAACCATCATATA+TGG | + | chr2_3:1565440-1565459 | Msa0270290:CDS | 30.0% | |
| TTTCAAACCATCATATATGG+AGG | + | chr2_3:1565443-1565462 | Msa0270290:CDS | 30.0% | |
| TCAAATTCCTCCATATATGA+TGG | - | chr2_3:1565453-1565472 | None:intergenic | 30.0% | |
| ! | AGAGGTATGATAGAATAGAA+TGG | + | chr2_3:1565560-1565579 | Msa0270290:intron | 30.0% |
| TACACATGATTCGTAAAACA+AGG | - | chr2_3:1565649-1565668 | None:intergenic | 30.0% | |
| !! | GGAAGATTTTGATAGTAGTT+TGG | + | chr2_3:1565742-1565761 | Msa0270290:exon | 30.0% |
| TACAAAGAATGTGGTATGTA+AGG | + | chr2_3:1565892-1565911 | Msa0270290:three_prime_UTR | 30.0% | |
| !!! | TTTTGGTTTTGGTGAGAGTA+GGG | - | chr2_3:1563534-1563553 | None:intergenic | 35.0% |
| !!! | TAGGGTTTTGGTTTTGGTTT+TGG | - | chr2_3:1563545-1563564 | None:intergenic | 35.0% |
| GATGAAATAGAACCGGTAAT+TGG | - | chr2_3:1563679-1563698 | None:intergenic | 35.0% | |
| AAACGAATCATTTCTTCAGG+TGG | - | chr2_3:1563907-1563926 | None:intergenic | 35.0% | |
| GAAGAGTCCAAGAAATTTGA+AGG | + | chr2_3:1564137-1564156 | Msa0270290:CDS | 35.0% | |
| TAACAAACAGGCCATAAACT+AGG | - | chr2_3:1564202-1564221 | None:intergenic | 35.0% | |
| AGATTTCTCCCAAATTGTAC+TGG | - | chr2_3:1564817-1564836 | None:intergenic | 35.0% | |
| GTACAATTTGGGAGAAATCT+AGG | + | chr2_3:1564817-1564836 | Msa0270290:CDS | 35.0% | |
| ! | TGTTGAGGTGGAAAATTTTG+TGG | - | chr2_3:1564949-1564968 | None:intergenic | 35.0% |
| ATTCCTCCACAACAAAACAT+TGG | + | chr2_3:1564991-1565010 | Msa0270290:CDS | 35.0% | |
| TATCCACCCAAACAAAACTA+TGG | + | chr2_3:1565096-1565115 | Msa0270290:CDS | 35.0% | |
| !!! | GCTTGACCATAGTTTTGTTT+GGG | - | chr2_3:1565105-1565124 | None:intergenic | 35.0% |
| !!! | AGCTTGACCATAGTTTTGTT+TGG | - | chr2_3:1565106-1565125 | None:intergenic | 35.0% |
| !! | TGCTGTTTGGAATAGTTTTG+TGG | - | chr2_3:1565168-1565187 | None:intergenic | 35.0% |
| TATTCCAAACAGCAAACCTA+TGG | + | chr2_3:1565174-1565193 | Msa0270290:CDS | 35.0% | |
| AAAGAAGAAATTATGCGCCA+CGG | + | chr2_3:1565253-1565272 | Msa0270290:CDS | 35.0% | |
| TAATCATGCTGAAGAACAGA+CGG | + | chr2_3:1565491-1565510 | Msa0270290:CDS | 35.0% | |
| CGAATCATGTGTACTGTAAA+TGG | + | chr2_3:1565656-1565675 | Msa0270290:intron | 35.0% | |
| CATTGTCACATACAATGTCT+TGG | - | chr2_3:1565972-1565991 | None:intergenic | 35.0% | |
| !!! | GTTTTGGTTTTGGTGAGAGT+AGG | - | chr2_3:1563535-1563554 | None:intergenic | 40.0% |
| !!! | AGAGAGTAGGGTTTTGGTTT+TGG | - | chr2_3:1563551-1563570 | None:intergenic | 40.0% |
| ! | TCGAGGTTGATCTGAATGAA+CGG | - | chr2_3:1563750-1563769 | None:intergenic | 40.0% |
| AGAAGACAAGAGAGAAATCG+AGG | - | chr2_3:1563767-1563786 | None:intergenic | 40.0% | |
| AAGGTTGCGATTACAATCAC+TGG | + | chr2_3:1563845-1563864 | Msa0270290:CDS | 40.0% | |
| GTGCTAAGGGTTTCAATATC+AGG | + | chr2_3:1563941-1563960 | Msa0270290:CDS | 40.0% | |
| TGCAGTACAACTGTTTACAC+TGG | + | chr2_3:1564092-1564111 | Msa0270290:CDS | 40.0% | |
| ACAGGGTCAATGTAAGAATC+CGG | - | chr2_3:1564565-1564584 | None:intergenic | 40.0% | |
| ACAGGAGATCAGTACATTGA+AGG | + | chr2_3:1564769-1564788 | Msa0270290:intron | 40.0% | |
| TTTCTCCCAAATTGTACTGG+TGG | - | chr2_3:1564814-1564833 | None:intergenic | 40.0% | |
| CAATTTGGGAGAAATCTAGG+AGG | + | chr2_3:1564820-1564839 | Msa0270290:CDS | 40.0% | |
| AATCAATTGCCAAACAACCG+AGG | + | chr2_3:1564865-1564884 | Msa0270290:CDS | 40.0% | |
| ATCAATTGCCAAACAACCGA+GGG | + | chr2_3:1564866-1564885 | Msa0270290:CDS | 40.0% | |
| GGAATCCCTCTTACAACAAT+CGG | + | chr2_3:1564887-1564906 | Msa0270290:CDS | 40.0% | |
| GAATCCCTCTTACAACAATC+GGG | + | chr2_3:1564888-1564907 | Msa0270290:CDS | 40.0% | |
| GAATCCCGATTGTTGTAAGA+GGG | - | chr2_3:1564895-1564914 | None:intergenic | 40.0% | |
| ! | TGAGGTGGAAAATTTTGTGG+AGG | - | chr2_3:1564946-1564965 | None:intergenic | 40.0% |
| TTTCCACCTCAACAGAACTA+TGG | + | chr2_3:1564955-1564974 | Msa0270290:CDS | 40.0% | |
| !! | TGTTGGCCAATGTTTTGTTG+TGG | - | chr2_3:1565000-1565019 | None:intergenic | 40.0% |
| GCCAACAACAACCAAATATC+CGG | + | chr2_3:1565013-1565032 | Msa0270290:CDS | 40.0% | |
| ACCGGATATTTGGTTGTTGT+TGG | - | chr2_3:1565017-1565036 | None:intergenic | 40.0% | |
| GCTGAATCAAACCGGATATT+TGG | - | chr2_3:1565027-1565046 | None:intergenic | 40.0% | |
| !!! | TGACCATAGTTTTGTTTGGG+TGG | - | chr2_3:1565102-1565121 | None:intergenic | 40.0% |
| ! | TGCGAGGCTGAATAATTTTG+TGG | - | chr2_3:1565129-1565148 | None:intergenic | 40.0% |
| TTTCTTCTTTCTCCTTCTCC+CGG | - | chr2_3:1565243-1565262 | None:intergenic | 40.0% | |
| TTTCTTCTTTCTCCTTGTCC+TGG | - | chr2_3:1565345-1565364 | None:intergenic | 40.0% | |
| GAATTTGAACAAGCCCAGAA+GGG | + | chr2_3:1565465-1565484 | Msa0270290:CDS | 40.0% | |
| AATTTGAACAAGCCCAGAAG+GGG | + | chr2_3:1565466-1565485 | Msa0270290:CDS | 40.0% | |
| AGCATGATTATTCCCCTTCT+GGG | - | chr2_3:1565481-1565500 | None:intergenic | 40.0% | |
| AATCATGCTGAAGAACAGAC+GGG | + | chr2_3:1565492-1565511 | Msa0270290:CDS | 40.0% | |
| CCTCTCCAGTAAAATTGCTA+GGG | - | chr2_3:1565545-1565564 | None:intergenic | 40.0% | |
| ACCTCTCCAGTAAAATTGCT+AGG | - | chr2_3:1565546-1565565 | None:intergenic | 40.0% | |
| TGATAGTAGTTTGGATCTCC+TGG | + | chr2_3:1565751-1565770 | Msa0270290:exon | 40.0% | |
| GATAGTAGTTTGGATCTCCT+GGG | + | chr2_3:1565752-1565771 | Msa0270290:exon | 40.0% | |
| ! | GCAATTTGGTAACTTCAGCA+AGG | - | chr2_3:1565782-1565801 | None:intergenic | 40.0% |
| GATTCGATTATTGACCCCAT+TGG | - | chr2_3:1565830-1565849 | None:intergenic | 40.0% | |
| !!! | GAGTAGGGTTTTGAGAAGCT+TGG | - | chr2_3:1563519-1563538 | None:intergenic | 45.0% |
| ! | CGAGGTTGATCTGAATGAAC+GGG | - | chr2_3:1563749-1563768 | None:intergenic | 45.0% |
| TCTCTCTTGTCTTCTCGCTA+CGG | + | chr2_3:1563772-1563791 | Msa0270290:CDS | 45.0% | |
| TCAGAACTCAGTCCTGAGAT+TGG | + | chr2_3:1563802-1563821 | Msa0270290:CDS | 45.0% | |
| TGTAATCGCAACCTTCGAAG+AGG | - | chr2_3:1563840-1563859 | None:intergenic | 45.0% | |
| !! | GGTGGAGGTTTGTTATCTCT+GGG | - | chr2_3:1563889-1563908 | None:intergenic | 45.0% |
| !! | AGGTGGAGGTTTGTTATCTC+TGG | - | chr2_3:1563890-1563909 | None:intergenic | 45.0% |
| CGAATCATTTCTTCAGGTGG+AGG | - | chr2_3:1563904-1563923 | None:intergenic | 45.0% | |
| GAAATCTAAGGGCCCATTTG+TGG | - | chr2_3:1564456-1564475 | None:intergenic | 45.0% | |
| ! | GGATTGTTGTGCTTTTCGAC+AGG | + | chr2_3:1564514-1564533 | Msa0270290:intron | 45.0% |
| GGCAACACAAAGATAACTCC+GGG | - | chr2_3:1564544-1564563 | None:intergenic | 45.0% | |
| CGGCAACACAAAGATAACTC+CGG | - | chr2_3:1564545-1564564 | None:intergenic | 45.0% | |
| CGGAGTTATCTTTGTGTTGC+CGG | + | chr2_3:1564543-1564562 | Msa0270290:CDS | 45.0% | |
| CTCCATACTGCTTGTTCACA+GGG | - | chr2_3:1564582-1564601 | None:intergenic | 45.0% | |
| ATTTATCGTCTCTCGCGTTC+TGG | + | chr2_3:1564621-1564640 | Msa0270290:intron | 45.0% | |
| ! | CAACTTTCGGTGTGTGATAC+AGG | + | chr2_3:1564751-1564770 | Msa0270290:intron | 45.0% |
| GACCTCCACCAGTACAATTT+GGG | + | chr2_3:1564806-1564825 | Msa0270290:CDS | 45.0% | |
| TAGGAGGAAGACGAGACTAT+CGG | + | chr2_3:1564836-1564855 | Msa0270290:CDS | 45.0% | |
| TGTTGTAAGAGGGATTCCCT+CGG | - | chr2_3:1564885-1564904 | None:intergenic | 45.0% | |
| GGAATCCCGATTGTTGTAAG+AGG | - | chr2_3:1564896-1564915 | None:intergenic | 45.0% | |
| CCATAGTTTCTACCATCCCT+TGG | - | chr2_3:1564922-1564941 | None:intergenic | 45.0% | |
| CCAAGGGATGGTAGAAACTA+TGG | + | chr2_3:1564919-1564938 | Msa0270290:CDS | 45.0% | |
| !! | TGGCCAATGTTTTGTTGTGG+AGG | - | chr2_3:1564997-1565016 | None:intergenic | 45.0% |
| ! | TGCTTGATCATAGCTCTGCT+GGG | - | chr2_3:1565067-1565086 | None:intergenic | 45.0% |
| AGCTATGATCAAGCACCACA+AGG | + | chr2_3:1565072-1565091 | Msa0270290:CDS | 45.0% | |
| GCTATGATCAAGCACCACAA+GGG | + | chr2_3:1565073-1565092 | Msa0270290:CDS | 45.0% | |
| !! | AGGACCATAGGTTTGCTGTT+TGG | - | chr2_3:1565181-1565200 | None:intergenic | 45.0% |
| CTTCTTCTGTCTACTTCTCC+CGG | - | chr2_3:1565294-1565313 | None:intergenic | 45.0% | |
| ! | TATGCGCCGCAGCAAAATTT+TGG | + | chr2_3:1565315-1565334 | Msa0270290:CDS | 45.0% |
| AAATCCCATCCACCTTCACT+AGG | - | chr2_3:1565426-1565445 | None:intergenic | 45.0% | |
| GGAATTTGAACAAGCCCAGA+AGG | + | chr2_3:1565464-1565483 | Msa0270290:CDS | 45.0% | |
| CAGCATGATTATTCCCCTTC+TGG | - | chr2_3:1565482-1565501 | None:intergenic | 45.0% | |
| ATCATGCTGAAGAACAGACG+GGG | + | chr2_3:1565493-1565512 | Msa0270290:CDS | 45.0% | |
| AGGAGGCGGAAATCTTTGTT+GGG | - | chr2_3:1565520-1565539 | None:intergenic | 45.0% | |
| ! | CCCTAGCAATTTTACTGGAG+AGG | + | chr2_3:1565542-1565561 | Msa0270290:CDS | 45.0% |
| TGATTGCATGTCCTTGCCAA+TGG | + | chr2_3:1565811-1565830 | Msa0270290:three_prime_UTR | 45.0% | |
| GATTGCATGTCCTTGCCAAT+GGG | + | chr2_3:1565812-1565831 | Msa0270290:three_prime_UTR | 45.0% | |
| ATTGCATGTCCTTGCCAATG+GGG | + | chr2_3:1565813-1565832 | Msa0270290:three_prime_UTR | 45.0% | |
| GATTATTGACCCCATTGGCA+AGG | - | chr2_3:1565825-1565844 | None:intergenic | 45.0% | |
| ! | GGTTGGAGAGAGTAGGGTTT+TGG | - | chr2_3:1563557-1563576 | None:intergenic | 50.0% |
| AATTAGCGACGATGCCATGG+CGG | - | chr2_3:1563581-1563600 | None:intergenic | 50.0% | |
| GAGAATTAGCGACGATGCCA+TGG | - | chr2_3:1563584-1563603 | None:intergenic | 50.0% | |
| AGCTACTGCGACTTCGCTTT+CGG | + | chr2_3:1563651-1563670 | Msa0270290:CDS | 50.0% | |
| TCGCTTTCGGTCCCAATTAC+CGG | + | chr2_3:1563664-1563683 | Msa0270290:CDS | 50.0% | |
| AAATCCCCAAACGTCGTCGA+CGG | + | chr2_3:1563715-1563734 | Msa0270290:CDS | 50.0% | |
| ! | ATGGTGTCAGGACCAATCTC+AGG | - | chr2_3:1563817-1563836 | None:intergenic | 50.0% |
| ATCGCAACCTTCGAAGAGGA+TGG | - | chr2_3:1563836-1563855 | None:intergenic | 50.0% | |
| ! | TGCTTTTCGACAGGTTTGCC+CGG | + | chr2_3:1564523-1564542 | Msa0270290:intron | 50.0% |
| GACCCTGTGAACAAGCAGTA+TGG | + | chr2_3:1564577-1564596 | Msa0270290:CDS | 50.0% | |
| CCTCCATACTGCTTGTTCAC+AGG | - | chr2_3:1564583-1564602 | None:intergenic | 50.0% | |
| CCTGTGAACAAGCAGTATGG+AGG | + | chr2_3:1564580-1564599 | Msa0270290:CDS | 50.0% | |
| ! | ATTGTACTGGTGGAGGTCGA+GGG | - | chr2_3:1564804-1564823 | None:intergenic | 50.0% |
| ! | AATTGTACTGGTGGAGGTCG+AGG | - | chr2_3:1564805-1564824 | None:intergenic | 50.0% |
| CGACCTCCACCAGTACAATT+TGG | + | chr2_3:1564805-1564824 | Msa0270290:CDS | 50.0% | |
| ! | CTCCCAAATTGTACTGGTGG+AGG | - | chr2_3:1564811-1564830 | None:intergenic | 50.0% |
| ACAATCGGGATTCCATGCCA+AGG | + | chr2_3:1564902-1564921 | Msa0270290:CDS | 50.0% | |
| CAATCGGGATTCCATGCCAA+GGG | + | chr2_3:1564903-1564922 | Msa0270290:CDS | 50.0% | |
| GTTTCTACCATCCCTTGGCA+TGG | - | chr2_3:1564917-1564936 | None:intergenic | 50.0% | |
| ! | TGGCCATAGTTCTGTTGAGG+TGG | - | chr2_3:1564961-1564980 | None:intergenic | 50.0% |
| ! | GCTTGGCCATAGTTCTGTTG+AGG | - | chr2_3:1564964-1564983 | None:intergenic | 50.0% |
| GTGGAGGAATGTGTGATGCT+TGG | - | chr2_3:1564981-1565000 | None:intergenic | 50.0% | |
| GCTGCGATGCTGAATCAAAC+CGG | - | chr2_3:1565035-1565054 | None:intergenic | 50.0% | |
| ! | GCTTGATCATAGCTCTGCTG+GGG | - | chr2_3:1565066-1565085 | None:intergenic | 50.0% |
| ! | GTGCTTGATCATAGCTCTGC+TGG | - | chr2_3:1565068-1565087 | None:intergenic | 50.0% |
| TGTTTGGGTGGATACCCTTG+TGG | - | chr2_3:1565090-1565109 | None:intergenic | 50.0% | |
| CGCTTGATTGAAGTTCTGCG+AGG | - | chr2_3:1565145-1565164 | None:intergenic | 50.0% | |
| TATCCACCACAGCAGAGCTT+TGG | + | chr2_3:1565213-1565232 | Msa0270290:CDS | 50.0% | |
| TTCTTTCTCCTTGTCCTGGC+GGG | - | chr2_3:1565341-1565360 | None:intergenic | 50.0% | |
| CTTCTTTCTCCTTGTCCTGG+CGG | - | chr2_3:1565342-1565361 | None:intergenic | 50.0% | |
| TATGCGCCACAGCAGAACTT+TGG | + | chr2_3:1565366-1565385 | Msa0270290:CDS | 50.0% | |
| ACAGCAGAACTTTGGACCAC+CGG | + | chr2_3:1565374-1565393 | Msa0270290:CDS | 50.0% | |
| TTTCCTCTTTCTCCCTGTCC+CGG | - | chr2_3:1565396-1565415 | None:intergenic | 50.0% | |
| GGAAACTCTGTGCCTAGTGA+AGG | + | chr2_3:1565411-1565430 | Msa0270290:CDS | 50.0% | |
| AACTCTGTGCCTAGTGAAGG+TGG | + | chr2_3:1565414-1565433 | Msa0270290:CDS | 50.0% | |
| TGTGCCTAGTGAAGGTGGAT+GGG | + | chr2_3:1565419-1565438 | Msa0270290:CDS | 50.0% | |
| CAGGAGGCGGAAATCTTTGT+TGG | - | chr2_3:1565521-1565540 | None:intergenic | 50.0% | |
| CAACAAAGATTTCCGCCTCC+TGG | + | chr2_3:1565519-1565538 | Msa0270290:CDS | 50.0% | |
| GTAAAATTGCTAGGGCCAGG+AGG | - | chr2_3:1565537-1565556 | None:intergenic | 50.0% | |
| CCAGTAAAATTGCTAGGGCC+AGG | - | chr2_3:1565540-1565559 | None:intergenic | 50.0% | |
| ! | CCTGGCCCTAGCAATTTTAC+TGG | + | chr2_3:1565537-1565556 | Msa0270290:CDS | 50.0% |
| AGTAGTTTGGATCTCCTGGG+AGG | + | chr2_3:1565755-1565774 | Msa0270290:three_prime_UTR | 50.0% | |
| TTACATAAGCAGGCAGCAGC+TGG | - | chr2_3:1565924-1565943 | None:intergenic | 50.0% | |
| AGAGTGATCTCAGGCTACGG+CGG | - | chr2_3:1563609-1563628 | None:intergenic | 55.0% | |
| CGGAGAGTGATCTCAGGCTA+CGG | - | chr2_3:1563612-1563631 | None:intergenic | 55.0% | |
| CGTAGCCTGAGATCACTCTC+CGG | + | chr2_3:1563610-1563629 | Msa0270290:CDS | 55.0% | |
| TAGCTGAGAAGGAGTGGTGG+AGG | - | chr2_3:1563636-1563655 | None:intergenic | 55.0% | |
| CAGTAGCTGAGAAGGAGTGG+TGG | - | chr2_3:1563639-1563658 | None:intergenic | 55.0% | |
| TCGCAGTAGCTGAGAAGGAG+TGG | - | chr2_3:1563642-1563661 | None:intergenic | 55.0% | |
| CGAAGTCGCAGTAGCTGAGA+AGG | - | chr2_3:1563647-1563666 | None:intergenic | 55.0% | |
| CCTTCGAAGAGGATGGTGTC+AGG | - | chr2_3:1563829-1563848 | None:intergenic | 55.0% | |
| CCTGACACCATCCTCTTCGA+AGG | + | chr2_3:1563826-1563845 | Msa0270290:CDS | 55.0% | |
| GAGGGATTCCCTCGGTTGTT+TGG | - | chr2_3:1564877-1564896 | None:intergenic | 55.0% | |
| ! | TGATCATAGCTCTGCTGGGG+TGG | - | chr2_3:1565063-1565082 | None:intergenic | 55.0% |
| !! | CTCTGCTGTGGTGGATACTG+TGG | - | chr2_3:1565210-1565229 | None:intergenic | 55.0% |
| !! | ACAGCAGAGCTTTGGACCAC+CGG | + | chr2_3:1565221-1565240 | Msa0270290:CDS | 55.0% |
| CTTCTTTCTCCTTCTCCCGG+TGG | - | chr2_3:1565240-1565259 | None:intergenic | 55.0% | |
| TATGCGCCACGGCAGAACTT+TGG | + | chr2_3:1565264-1565283 | Msa0270290:CDS | 55.0% | |
| ATGCGCCACGGCAGAACTTT+GGG | + | chr2_3:1565265-1565284 | Msa0270290:CDS | 55.0% | |
| CTTCTGTCTACTTCTCCCGG+TGG | - | chr2_3:1565291-1565310 | None:intergenic | 55.0% | |
| ! | GGCGGGCCAAAATTTTGCTG+CGG | - | chr2_3:1565324-1565343 | None:intergenic | 55.0% |
| !! | CAGCAAAATTTTGGCCCGCC+AGG | + | chr2_3:1565324-1565343 | Msa0270290:CDS | 55.0% |
| !! | AATTTTGGCCCGCCAGGACA+AGG | + | chr2_3:1565330-1565349 | Msa0270290:CDS | 55.0% |
| GGTGGTCCAAAGTTCTGCTG+TGG | - | chr2_3:1565375-1565394 | None:intergenic | 55.0% | |
| CAGCAGAACTTTGGACCACC+GGG | + | chr2_3:1565375-1565394 | Msa0270290:CDS | 55.0% | |
| AACTTTGGACCACCGGGACA+GGG | + | chr2_3:1565381-1565400 | Msa0270290:CDS | 55.0% | |
| CTGTGCCTAGTGAAGGTGGA+TGG | + | chr2_3:1565418-1565437 | Msa0270290:CDS | 55.0% | |
| AAATTGCTAGGGCCAGGAGG+CGG | - | chr2_3:1565534-1565553 | None:intergenic | 55.0% | |
| AACTTCAGCAAGGACCTCCC+AGG | - | chr2_3:1565772-1565791 | None:intergenic | 55.0% | |
| GGCGGTGGTTGGAGAGAGTA+GGG | - | chr2_3:1563563-1563582 | None:intergenic | 60.0% | |
| TGGCGGTGGTTGGAGAGAGT+AGG | - | chr2_3:1563564-1563583 | None:intergenic | 60.0% | |
| ACTCTCTCCAACCACCGCCA+TGG | + | chr2_3:1563564-1563583 | Msa0270290:exon | 60.0% | |
| ! | TGAGAAGGAGTGGTGGAGGC+CGG | - | chr2_3:1563632-1563651 | None:intergenic | 60.0% |
| AACGCCGTCGACGACGTTTG+GGG | - | chr2_3:1563722-1563741 | None:intergenic | 60.0% | |
| GAACGCCGTCGACGACGTTT+GGG | - | chr2_3:1563723-1563742 | None:intergenic | 60.0% | |
| TGAACGCCGTCGACGACGTT+TGG | - | chr2_3:1563724-1563743 | None:intergenic | 60.0% | |
| CGGGATTCCATGCCAAGGGA+TGG | + | chr2_3:1564907-1564926 | Msa0270290:CDS | 60.0% | |
| CTGTGGCGAAGCAGGACCAT+AGG | - | chr2_3:1565193-1565212 | None:intergenic | 60.0% | |
| GGTGGATACTGTGGCGAAGC+AGG | - | chr2_3:1565201-1565220 | None:intergenic | 60.0% | |
| GGTCCAAAGCTCTGCTGTGG+TGG | - | chr2_3:1565219-1565238 | None:intergenic | 60.0% | |
| GGTGGTCCAAAGCTCTGCTG+TGG | - | chr2_3:1565222-1565241 | None:intergenic | 60.0% | |
| !! | CAGCAGAGCTTTGGACCACC+GGG | + | chr2_3:1565222-1565241 | Msa0270290:CDS | 60.0% |
| !! | AGCTTTGGACCACCGGGAGA+AGG | + | chr2_3:1565228-1565247 | Msa0270290:CDS | 60.0% |
| ACGGCAGAACTTTGGGCCAC+CGG | + | chr2_3:1565272-1565291 | Msa0270290:CDS | 60.0% | |
| GAACTTTGGACCACCGGGAC+AGG | + | chr2_3:1565380-1565399 | Msa0270290:CDS | 60.0% | |
| GACGATGCCATGGCGGTGGT+TGG | - | chr2_3:1563574-1563593 | None:intergenic | 65.0% | |
| TAGCGACGATGCCATGGCGG+TGG | - | chr2_3:1563578-1563597 | None:intergenic | 65.0% | |
| GTGATCTCAGGCTACGGCGG+AGG | - | chr2_3:1563606-1563625 | None:intergenic | 65.0% | |
| GGAGGCCGGAGAGTGATCTC+AGG | - | chr2_3:1563618-1563637 | None:intergenic | 65.0% | |
| GGTGGCCCAAAGTTCTGCCG+TGG | - | chr2_3:1565273-1565292 | None:intergenic | 65.0% | |
| CGGCAGAACTTTGGGCCACC+GGG | + | chr2_3:1565273-1565292 | Msa0270290:CDS | 65.0% | |
| CCTCTTTCTCCCTGTCCCGG+TGG | - | chr2_3:1565393-1565412 | None:intergenic | 65.0% | |
| CCACCGGGACAGGGAGAAAG+AGG | + | chr2_3:1565390-1565409 | Msa0270290:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 1563499 | 1566080 | 1563499 | ID=Msa0270290;Name=Msa0270290 |
| chr2_3 | mRNA | 1563499 | 1566080 | 1563499 | ID=Msa0270290-mRNA-1;Parent=Msa0270290;Name=Msa0270290-mRNA-1;_AED=0.01;_eAED=0.01;_QI=84|1|1|1|1|1|5|327|448 |
| chr2_3 | exon | 1563499 | 1563962 | 1563499 | ID=Msa0270290-mRNA-1:exon:641;Parent=Msa0270290-mRNA-1 |
| chr2_3 | exon | 1564061 | 1564158 | 1564061 | ID=Msa0270290-mRNA-1:exon:642;Parent=Msa0270290-mRNA-1 |
| chr2_3 | exon | 1564536 | 1564601 | 1564536 | ID=Msa0270290-mRNA-1:exon:643;Parent=Msa0270290-mRNA-1 |
| chr2_3 | exon | 1564773 | 1565563 | 1564773 | ID=Msa0270290-mRNA-1:exon:644;Parent=Msa0270290-mRNA-1 |
| chr2_3 | exon | 1565742 | 1566080 | 1565742 | ID=Msa0270290-mRNA-1:exon:645;Parent=Msa0270290-mRNA-1 |
| chr2_3 | five_prime_UTR | 1563499 | 1563582 | 1563499 | ID=Msa0270290-mRNA-1:five_prime_utr;Parent=Msa0270290-mRNA-1 |
| chr2_3 | CDS | 1563583 | 1563962 | 1563583 | ID=Msa0270290-mRNA-1:cds;Parent=Msa0270290-mRNA-1 |
| chr2_3 | CDS | 1564061 | 1564158 | 1564061 | ID=Msa0270290-mRNA-1:cds;Parent=Msa0270290-mRNA-1 |
| chr2_3 | CDS | 1564536 | 1564601 | 1564536 | ID=Msa0270290-mRNA-1:cds;Parent=Msa0270290-mRNA-1 |
| chr2_3 | CDS | 1564773 | 1565563 | 1564773 | ID=Msa0270290-mRNA-1:cds;Parent=Msa0270290-mRNA-1 |
| chr2_3 | CDS | 1565742 | 1565753 | 1565742 | ID=Msa0270290-mRNA-1:cds;Parent=Msa0270290-mRNA-1 |
| chr2_3 | three_prime_UTR | 1565754 | 1566080 | 1565754 | ID=Msa0270290-mRNA-1:three_prime_utr;Parent=Msa0270290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
