Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0270290 | XP_003592967.1 | 90.787 | 445 | 24 | 2 | 17 | 448 | 49 | 489 | 0.0 | 807 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0270290 | sp|O49429|MORF1_ARATH | 44.361 | 266 | 114 | 8 | 15 | 257 | 1 | 255 | 1.59e-59 | 203 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0080510 | Msa0270290 | 0.816226 | 6.166974e-52 | -8.615850e-47 |
Msa0173150 | Msa0270290 | 0.825302 | 5.048117e-54 | -8.615850e-47 |
Msa0186060 | Msa0270290 | 0.822210 | 2.675803e-53 | -8.615850e-47 |
Msa0188380 | Msa0270290 | 0.840674 | 7.543971e-58 | -8.615850e-47 |
Msa0231130 | Msa0270290 | 0.906342 | 1.644349e-80 | -8.615850e-47 |
Msa0270290 | Msa1087600 | 0.823731 | 1.182537e-53 | -8.615850e-47 |
Msa0270290 | Msa1402130 | 0.828478 | 8.790731e-55 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0270290 | MtrunA17_Chr2g0277431 | 90.787 | 445 | 24 | 2 | 17 | 448 | 49 | 489 | 0.0 | 807 |
Msa0270290 | MtrunA17_Chr2g0277451 | 75.000 | 128 | 29 | 1 | 1 | 128 | 1 | 125 | 3.79e-57 | 185 |
Msa0270290 | MtrunA17_Chr2g0280611 | 53.968 | 126 | 57 | 1 | 83 | 208 | 78 | 202 | 2.78e-39 | 141 |
Msa0270290 | MtrunA17_Chr4g0067641 | 54.464 | 112 | 50 | 1 | 83 | 194 | 80 | 190 | 1.28e-37 | 138 |
Msa0270290 | MtrunA17_Chr1g0166671 | 45.223 | 157 | 69 | 4 | 55 | 198 | 35 | 187 | 3.13e-31 | 119 |
Msa0270290 | MtrunA17_Chr1g0187251 | 49.558 | 113 | 56 | 1 | 86 | 198 | 94 | 205 | 2.76e-29 | 114 |
Msa0270290 | MtrunA17_Chr2g0316311 | 45.133 | 113 | 60 | 2 | 83 | 195 | 86 | 196 | 3.10e-23 | 100 |
Msa0270290 | MtrunA17_Chr1g0148081 | 32.653 | 343 | 171 | 15 | 6 | 322 | 5 | 313 | 3.44e-23 | 99.8 |
Msa0270290 | MtrunA17_Chr6g0467031 | 37.037 | 108 | 58 | 3 | 89 | 191 | 72 | 174 | 2.05e-12 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0270290 | AT4G20020.2 | 44.361 | 266 | 114 | 8 | 15 | 257 | 1 | 255 | 5.81e-61 | 204 |
Msa0270290 | AT4G20020.1 | 44.361 | 266 | 114 | 8 | 15 | 257 | 1 | 255 | 1.62e-60 | 203 |
Msa0270290 | AT5G44780.1 | 54.545 | 143 | 61 | 2 | 59 | 197 | 45 | 187 | 6.24e-42 | 158 |
Msa0270290 | AT1G11430.1 | 60.909 | 110 | 42 | 1 | 83 | 192 | 78 | 186 | 3.11e-40 | 144 |
Msa0270290 | AT3G06790.2 | 57.143 | 112 | 46 | 2 | 83 | 194 | 85 | 194 | 1.85e-36 | 134 |
Msa0270290 | AT3G06790.1 | 57.143 | 112 | 46 | 2 | 83 | 194 | 85 | 194 | 2.74e-36 | 134 |
Msa0270290 | AT2G35240.1 | 45.833 | 144 | 64 | 3 | 86 | 227 | 90 | 221 | 2.12e-31 | 120 |
Msa0270290 | AT1G32580.1 | 43.791 | 153 | 72 | 3 | 86 | 236 | 87 | 227 | 8.45e-31 | 119 |
Msa0270290 | AT3G15000.1 | 36.410 | 195 | 112 | 5 | 2 | 195 | 15 | 198 | 3.77e-25 | 107 |
Msa0270290 | AT1G72530.1 | 38.318 | 107 | 64 | 2 | 86 | 192 | 48 | 152 | 2.05e-17 | 80.5 |
Msa0270290 | AT1G72530.2 | 36.937 | 111 | 64 | 3 | 86 | 192 | 48 | 156 | 2.99e-15 | 74.3 |
Msa0270290 | AT1G53260.2 | 46.774 | 62 | 33 | 0 | 134 | 195 | 2 | 63 | 1.06e-11 | 65.1 |
Msa0270290 | AT1G53260.1 | 47.458 | 59 | 31 | 0 | 134 | 192 | 2 | 60 | 1.25e-11 | 65.5 |
Find 176 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAGCATGATTATTCCCCTTC+TGG | 0.152275 | 2_3:-1565479 | None:intergenic |
ACAAATACCTTCAAATTTCT+TGG | 0.193516 | 2_3:-1564144 | None:intergenic |
GCTGAATCAAACCGGATATT+TGG | 0.205342 | 2_3:-1565024 | None:intergenic |
TATGCGCCGCAGCAAAATTT+TGG | 0.234811 | 2_3:+1565315 | Msa0270290:CDS |
TTGAATTGTGTAAATTATAA+AGG | 0.249285 | 2_3:-1566023 | None:intergenic |
GATGAAATAGAACCGGTAAT+TGG | 0.256818 | 2_3:-1563676 | None:intergenic |
AGGTGGAGGTTTGTTATCTC+TGG | 0.258166 | 2_3:-1563887 | None:intergenic |
GTGCTAAGGGTTTCAATATC+AGG | 0.262167 | 2_3:+1563941 | Msa0270290:CDS |
CGACCTCCACCAGTACAATT+TGG | 0.262627 | 2_3:+1564805 | Msa0270290:CDS |
TCGCTTTCGGTCCCAATTAC+CGG | 0.272059 | 2_3:+1563664 | Msa0270290:CDS |
CGGAGTTATCTTTGTGTTGC+CGG | 0.290339 | 2_3:+1564543 | Msa0270290:CDS |
GGTTGGAGAGAGTAGGGTTT+TGG | 0.304529 | 2_3:-1563554 | None:intergenic |
AATCAACTTAGAATGCAATT+TGG | 0.312821 | 2_3:-1565793 | None:intergenic |
TGAACGCCGTCGACGACGTT+TGG | 0.320333 | 2_3:-1563721 | None:intergenic |
ATAACAAATAAGTTAGAGAT+AGG | 0.328503 | 2_3:-1566000 | None:intergenic |
GGATTTCAAACCATCATATA+TGG | 0.330866 | 2_3:+1565440 | Msa0270290:CDS |
GAACGCCGTCGACGACGTTT+GGG | 0.334529 | 2_3:-1563720 | None:intergenic |
AGCTACTGCGACTTCGCTTT+CGG | 0.360324 | 2_3:+1563651 | Msa0270290:CDS |
GTGCTTGATCATAGCTCTGC+TGG | 0.368496 | 2_3:-1565065 | None:intergenic |
GAGGGATTCCCTCGGTTGTT+TGG | 0.372916 | 2_3:-1564874 | None:intergenic |
ATGCGCCACGGCAGAACTTT+GGG | 0.375645 | 2_3:+1565265 | Msa0270290:CDS |
TGATAGTAGTTTGGATCTCC+TGG | 0.381637 | 2_3:+1565751 | Msa0270290:exon |
AGCATGATTATTCCCCTTCT+GGG | 0.387365 | 2_3:-1565478 | None:intergenic |
CCAAGGGATGGTAGAAACTA+TGG | 0.387810 | 2_3:+1564919 | Msa0270290:CDS |
ATGTCAAATACGACGTCGTT+TGG | 0.388549 | 2_3:-1566062 | None:intergenic |
TTCTTTCTCCTTGTCCTGGC+GGG | 0.390261 | 2_3:-1565338 | None:intergenic |
CCTCCATACTGCTTGTTCAC+AGG | 0.391130 | 2_3:-1564580 | None:intergenic |
TACAAAGAATGTGGTATGTA+AGG | 0.397330 | 2_3:+1565892 | Msa0270290:three_prime_UTR |
TATGCGCCACGGCAGAACTT+TGG | 0.400286 | 2_3:+1565264 | Msa0270290:CDS |
ATGAAATAGAACCGGTAATT+GGG | 0.400337 | 2_3:-1563675 | None:intergenic |
TTTCCACCTCAACAGAACTA+TGG | 0.401446 | 2_3:+1564955 | Msa0270290:CDS |
TGCTTGATCATAGCTCTGCT+GGG | 0.408969 | 2_3:-1565064 | None:intergenic |
ACCGGATATTTGGTTGTTGT+TGG | 0.414885 | 2_3:-1565014 | None:intergenic |
GGAATCCCTCTTACAACAAT+CGG | 0.421869 | 2_3:+1564887 | Msa0270290:CDS |
GTACAATTTGGGAGAAATCT+AGG | 0.426083 | 2_3:+1564817 | Msa0270290:CDS |
TTTCTTCTTTCTCCTTGTCC+TGG | 0.430267 | 2_3:-1565342 | None:intergenic |
GACCTCCACCAGTACAATTT+GGG | 0.430347 | 2_3:+1564806 | Msa0270290:CDS |
AGGACCATAGGTTTGCTGTT+TGG | 0.430424 | 2_3:-1565178 | None:intergenic |
TATCCACCCAAACAAAACTA+TGG | 0.437816 | 2_3:+1565096 | Msa0270290:CDS |
GACCCTGTGAACAAGCAGTA+TGG | 0.438673 | 2_3:+1564577 | Msa0270290:CDS |
CGAATCATTTCTTCAGGTGG+AGG | 0.439284 | 2_3:-1563901 | None:intergenic |
TATGCGCCACAGCAGAACTT+TGG | 0.449668 | 2_3:+1565366 | Msa0270290:CDS |
GATTGCATGTCCTTGCCAAT+GGG | 0.450211 | 2_3:+1565812 | Msa0270290:three_prime_UTR |
TTTCTTCTTTCTCCTTCTCC+CGG | 0.453717 | 2_3:-1565240 | None:intergenic |
GAAGAGTCCAAGAAATTTGA+AGG | 0.456510 | 2_3:+1564137 | Msa0270290:CDS |
CAGGAGGCGGAAATCTTTGT+TGG | 0.457098 | 2_3:-1565518 | None:intergenic |
GCCAACAACAACCAAATATC+CGG | 0.458194 | 2_3:+1565013 | Msa0270290:CDS |
TCAAATTCCTCCATATATGA+TGG | 0.460060 | 2_3:-1565450 | None:intergenic |
TTTCCTCTTTCTCCCTGTCC+CGG | 0.461374 | 2_3:-1565393 | None:intergenic |
TATCCACCACAGCAGAGCTT+TGG | 0.463958 | 2_3:+1565213 | Msa0270290:CDS |
GAACTTTGGACCACCGGGAC+AGG | 0.464751 | 2_3:+1565380 | Msa0270290:CDS |
CGAGGTTGATCTGAATGAAC+GGG | 0.468117 | 2_3:-1563746 | None:intergenic |
ACAGCAGAGCTTTGGACCAC+CGG | 0.470038 | 2_3:+1565221 | Msa0270290:CDS |
GGAATCCCGATTGTTGTAAG+AGG | 0.470092 | 2_3:-1564893 | None:intergenic |
CAACAAAGATTTCCGCCTCC+TGG | 0.472277 | 2_3:+1565519 | Msa0270290:CDS |
AGATTTCTCCCAAATTGTAC+TGG | 0.474613 | 2_3:-1564814 | None:intergenic |
AATTGTACTGGTGGAGGTCG+AGG | 0.477720 | 2_3:-1564802 | None:intergenic |
GATTCGATTATTGACCCCAT+TGG | 0.480674 | 2_3:-1565827 | None:intergenic |
CGGCAGAACTTTGGGCCACC+GGG | 0.483926 | 2_3:+1565273 | Msa0270290:CDS |
TTATGAAGAAACTTGTGCTA+AGG | 0.485239 | 2_3:+1563927 | Msa0270290:CDS |
ACGGCAGAACTTTGGGCCAC+CGG | 0.489335 | 2_3:+1565272 | Msa0270290:CDS |
TATGAAGAAACTTGTGCTAA+GGG | 0.489463 | 2_3:+1563928 | Msa0270290:CDS |
ATGGTGTCAGGACCAATCTC+AGG | 0.489874 | 2_3:-1563814 | None:intergenic |
GGTGGAGGTTTGTTATCTCT+GGG | 0.493016 | 2_3:-1563886 | None:intergenic |
CCTTCGAAGAGGATGGTGTC+AGG | 0.493439 | 2_3:-1563826 | None:intergenic |
CTCCATACTGCTTGTTCACA+GGG | 0.493888 | 2_3:-1564579 | None:intergenic |
CCAGTAAAATTGCTAGGGCC+AGG | 0.494495 | 2_3:-1565537 | None:intergenic |
CCACCGGGACAGGGAGAAAG+AGG | 0.494921 | 2_3:+1565390 | Msa0270290:CDS |
CGAAGTCGCAGTAGCTGAGA+AGG | 0.498879 | 2_3:-1563644 | None:intergenic |
CTCCCAAATTGTACTGGTGG+AGG | 0.499376 | 2_3:-1564808 | None:intergenic |
TCAGAACTCAGTCCTGAGAT+TGG | 0.500163 | 2_3:+1563802 | Msa0270290:CDS |
AGGAGGCGGAAATCTTTGTT+GGG | 0.503310 | 2_3:-1565517 | None:intergenic |
ACAGCAGAACTTTGGACCAC+CGG | 0.505295 | 2_3:+1565374 | Msa0270290:CDS |
GATAGTAGTTTGGATCTCCT+GGG | 0.505442 | 2_3:+1565752 | Msa0270290:exon |
GGCGGTGGTTGGAGAGAGTA+GGG | 0.506484 | 2_3:-1563560 | None:intergenic |
TTACATAAGCAGGCAGCAGC+TGG | 0.507777 | 2_3:-1565921 | None:intergenic |
ACAGGGTCAATGTAAGAATC+CGG | 0.508563 | 2_3:-1564562 | None:intergenic |
TGATTGCATGTCCTTGCCAA+TGG | 0.509203 | 2_3:+1565811 | Msa0270290:three_prime_UTR |
AAAATGTGATGAAATAGAAC+CGG | 0.509305 | 2_3:-1563683 | None:intergenic |
TCTCTCTTGTCTTCTCGCTA+CGG | 0.509897 | 2_3:+1563772 | Msa0270290:CDS |
CTTCTTCTGTCTACTTCTCC+CGG | 0.510565 | 2_3:-1565291 | None:intergenic |
TGAGAAGGAGTGGTGGAGGC+CGG | 0.512480 | 2_3:-1563629 | None:intergenic |
TAACAAATAAGTTAGAGATA+GGG | 0.512918 | 2_3:-1565999 | None:intergenic |
AAGGTTGCGATTACAATCAC+TGG | 0.516564 | 2_3:+1563845 | Msa0270290:CDS |
TATTCCAAACAGCAAACCTA+TGG | 0.521162 | 2_3:+1565174 | Msa0270290:CDS |
GAGAATTAGCGACGATGCCA+TGG | 0.522594 | 2_3:-1563581 | None:intergenic |
GCTGCGATGCTGAATCAAAC+CGG | 0.524624 | 2_3:-1565032 | None:intergenic |
CTGTGCCTAGTGAAGGTGGA+TGG | 0.529404 | 2_3:+1565418 | Msa0270290:CDS |
GTGATCTCAGGCTACGGCGG+AGG | 0.532432 | 2_3:-1563603 | None:intergenic |
GGTGGATACTGTGGCGAAGC+AGG | 0.533094 | 2_3:-1565198 | None:intergenic |
CCATAGTTTCTACCATCCCT+TGG | 0.533589 | 2_3:-1564919 | None:intergenic |
TGCAGTACAACTGTTTACAC+TGG | 0.536636 | 2_3:+1564092 | Msa0270290:CDS |
ACCTCTCCAGTAAAATTGCT+AGG | 0.537861 | 2_3:-1565543 | None:intergenic |
CATTGTCACATACAATGTCT+TGG | 0.540618 | 2_3:-1565969 | None:intergenic |
AAACGAATCATTTCTTCAGG+TGG | 0.541590 | 2_3:-1563904 | None:intergenic |
TAGCTGAGAAGGAGTGGTGG+AGG | 0.542761 | 2_3:-1563633 | None:intergenic |
GAATCCCTCTTACAACAATC+GGG | 0.542891 | 2_3:+1564888 | Msa0270290:CDS |
AGCTTTGGACCACCGGGAGA+AGG | 0.543753 | 2_3:+1565228 | Msa0270290:CDS |
GGAATTTGAACAAGCCCAGA+AGG | 0.546452 | 2_3:+1565464 | Msa0270290:CDS |
AAATCCCATCCACCTTCACT+AGG | 0.549954 | 2_3:-1565423 | None:intergenic |
TGATCATAGCTCTGCTGGGG+TGG | 0.551769 | 2_3:-1565060 | None:intergenic |
CTTCTTTCTCCTTGTCCTGG+CGG | 0.551794 | 2_3:-1565339 | None:intergenic |
TAGCGACGATGCCATGGCGG+TGG | 0.552180 | 2_3:-1563575 | None:intergenic |
GACGATGCCATGGCGGTGGT+TGG | 0.556448 | 2_3:-1563571 | None:intergenic |
CTGTGGCGAAGCAGGACCAT+AGG | 0.556513 | 2_3:-1565190 | None:intergenic |
GTGGAGGAATGTGTGATGCT+TGG | 0.556911 | 2_3:-1564978 | None:intergenic |
GGTCCAAAGCTCTGCTGTGG+TGG | 0.557931 | 2_3:-1565216 | None:intergenic |
TTTCTCCCAAATTGTACTGG+TGG | 0.558252 | 2_3:-1564811 | None:intergenic |
ACAGGAGATCAGTACATTGA+AGG | 0.559699 | 2_3:+1564769 | Msa0270290:intron |
TCGAGGTTGATCTGAATGAA+CGG | 0.562081 | 2_3:-1563747 | None:intergenic |
AACTTCAGCAAGGACCTCCC+AGG | 0.563026 | 2_3:-1565769 | None:intergenic |
AACGCCGTCGACGACGTTTG+GGG | 0.563351 | 2_3:-1563719 | None:intergenic |
GTTTCTACCATCCCTTGGCA+TGG | 0.563433 | 2_3:-1564914 | None:intergenic |
TGGCGGTGGTTGGAGAGAGT+AGG | 0.564065 | 2_3:-1563561 | None:intergenic |
TGTGCCTAGTGAAGGTGGAT+GGG | 0.564317 | 2_3:+1565419 | Msa0270290:CDS |
GGCAACACAAAGATAACTCC+GGG | 0.564421 | 2_3:-1564541 | None:intergenic |
CAGCAGAACTTTGGACCACC+GGG | 0.568755 | 2_3:+1565375 | Msa0270290:CDS |
AACTCTGTGCCTAGTGAAGG+TGG | 0.569286 | 2_3:+1565414 | Msa0270290:CDS |
CAGCAGAGCTTTGGACCACC+GGG | 0.574321 | 2_3:+1565222 | Msa0270290:CDS |
CGGCAACACAAAGATAACTC+CGG | 0.575792 | 2_3:-1564542 | None:intergenic |
GATTATTGACCCCATTGGCA+AGG | 0.576302 | 2_3:-1565822 | None:intergenic |
GGAGGCCGGAGAGTGATCTC+AGG | 0.580525 | 2_3:-1563615 | None:intergenic |
TCGCAGTAGCTGAGAAGGAG+TGG | 0.580953 | 2_3:-1563639 | None:intergenic |
CCTGACACCATCCTCTTCGA+AGG | 0.582398 | 2_3:+1563826 | Msa0270290:CDS |
TAATCATGCTGAAGAACAGA+CGG | 0.584349 | 2_3:+1565491 | Msa0270290:CDS |
GGAAACTCTGTGCCTAGTGA+AGG | 0.586295 | 2_3:+1565411 | Msa0270290:CDS |
GAATCCCGATTGTTGTAAGA+GGG | 0.586300 | 2_3:-1564892 | None:intergenic |
AACTTTGGACCACCGGGACA+GGG | 0.587378 | 2_3:+1565381 | Msa0270290:CDS |
CCTCTTTCTCCCTGTCCCGG+TGG | 0.592801 | 2_3:-1565390 | None:intergenic |
CCTCTCCAGTAAAATTGCTA+GGG | 0.592900 | 2_3:-1565542 | None:intergenic |
TAGGAGGAAGACGAGACTAT+CGG | 0.594936 | 2_3:+1564836 | Msa0270290:CDS |
CGGGATTCCATGCCAAGGGA+TGG | 0.595865 | 2_3:+1564907 | Msa0270290:CDS |
AGCTATGATCAAGCACCACA+AGG | 0.596634 | 2_3:+1565072 | Msa0270290:CDS |
CTCTGCTGTGGTGGATACTG+TGG | 0.600550 | 2_3:-1565207 | None:intergenic |
CGGAGAGTGATCTCAGGCTA+CGG | 0.601292 | 2_3:-1563609 | None:intergenic |
TGGCCATAGTTCTGTTGAGG+TGG | 0.603738 | 2_3:-1564958 | None:intergenic |
GCTTGGCCATAGTTCTGTTG+AGG | 0.603846 | 2_3:-1564961 | None:intergenic |
ATTGTACTGGTGGAGGTCGA+GGG | 0.609778 | 2_3:-1564801 | None:intergenic |
AAATTGCTAGGGCCAGGAGG+CGG | 0.610340 | 2_3:-1565531 | None:intergenic |
ATCAATTGCCAAACAACCGA+GGG | 0.610471 | 2_3:+1564866 | Msa0270290:CDS |
CTTCTTTCTCCTTCTCCCGG+TGG | 0.610979 | 2_3:-1565237 | None:intergenic |
TGTTGTAAGAGGGATTCCCT+CGG | 0.611597 | 2_3:-1564882 | None:intergenic |
AATCATGCTGAAGAACAGAC+GGG | 0.612561 | 2_3:+1565492 | Msa0270290:CDS |
AAATCCCCAAACGTCGTCGA+CGG | 0.615141 | 2_3:+1563715 | Msa0270290:CDS |
ATCGCAACCTTCGAAGAGGA+TGG | 0.615614 | 2_3:-1563833 | None:intergenic |
CAGTAGCTGAGAAGGAGTGG+TGG | 0.617757 | 2_3:-1563636 | None:intergenic |
GGTGGTCCAAAGTTCTGCTG+TGG | 0.619499 | 2_3:-1565372 | None:intergenic |
ACTCTCTCCAACCACCGCCA+TGG | 0.624268 | 2_3:+1563564 | Msa0270290:exon |
GGTGGCCCAAAGTTCTGCCG+TGG | 0.626931 | 2_3:-1565270 | None:intergenic |
TTTGTAATGAAAACAGAACA+TGG | 0.627428 | 2_3:-1565875 | None:intergenic |
GGTGGTCCAAAGCTCTGCTG+TGG | 0.627905 | 2_3:-1565219 | None:intergenic |
GAATTTGAACAAGCCCAGAA+GGG | 0.628457 | 2_3:+1565465 | Msa0270290:CDS |
AGAAGACAAGAGAGAAATCG+AGG | 0.630277 | 2_3:-1563764 | None:intergenic |
TTTCAAACCATCATATATGG+AGG | 0.632324 | 2_3:+1565443 | Msa0270290:CDS |
ATTCCTCCACAACAAAACAT+TGG | 0.633304 | 2_3:+1564991 | Msa0270290:CDS |
CAATCGGGATTCCATGCCAA+GGG | 0.634508 | 2_3:+1564903 | Msa0270290:CDS |
ATTGCATGTCCTTGCCAATG+GGG | 0.637692 | 2_3:+1565813 | Msa0270290:three_prime_UTR |
AATTTGAACAAGCCCAGAAG+GGG | 0.637787 | 2_3:+1565466 | Msa0270290:CDS |
ACAATCGGGATTCCATGCCA+AGG | 0.637883 | 2_3:+1564902 | Msa0270290:CDS |
AAAGAAGAAATTATGCGCCA+CGG | 0.637957 | 2_3:+1565253 | Msa0270290:CDS |
AATCAATTGCCAAACAACCG+AGG | 0.644295 | 2_3:+1564865 | Msa0270290:CDS |
CGCTTGATTGAAGTTCTGCG+AGG | 0.644978 | 2_3:-1565142 | None:intergenic |
GCTTGATCATAGCTCTGCTG+GGG | 0.651267 | 2_3:-1565063 | None:intergenic |
GCAATTTGGTAACTTCAGCA+AGG | 0.651404 | 2_3:-1565779 | None:intergenic |
TGTAATCGCAACCTTCGAAG+AGG | 0.655228 | 2_3:-1563837 | None:intergenic |
TGTTTGGGTGGATACCCTTG+TGG | 0.664703 | 2_3:-1565087 | None:intergenic |
GTAAAATTGCTAGGGCCAGG+AGG | 0.666157 | 2_3:-1565534 | None:intergenic |
CCTGTGAACAAGCAGTATGG+AGG | 0.671051 | 2_3:+1564580 | Msa0270290:CDS |
GCTATGATCAAGCACCACAA+GGG | 0.671691 | 2_3:+1565073 | Msa0270290:CDS |
AGTAGTTTGGATCTCCTGGG+AGG | 0.674854 | 2_3:+1565755 | Msa0270290:three_prime_UTR |
CGTAGCCTGAGATCACTCTC+CGG | 0.691705 | 2_3:+1563610 | Msa0270290:CDS |
CTTCTGTCTACTTCTCCCGG+TGG | 0.703848 | 2_3:-1565288 | None:intergenic |
AGAGTGATCTCAGGCTACGG+CGG | 0.711287 | 2_3:-1563606 | None:intergenic |
AATTAGCGACGATGCCATGG+CGG | 0.721913 | 2_3:-1563578 | None:intergenic |
CAATTTGGGAGAAATCTAGG+AGG | 0.741053 | 2_3:+1564820 | Msa0270290:CDS |
ATCATGCTGAAGAACAGACG+GGG | 0.746376 | 2_3:+1565493 | Msa0270290:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTTAGAAAGATTAATATTA+TGG | + | chr2_3:1564002-1564021 | Msa0270290:intron | 10.0% |
!!! | GTAAATTAAAAAAGTAATTT+TGG | + | chr2_3:1564300-1564319 | Msa0270290:intron | 10.0% |
!!! | TTATACAATGTATCATTTTT+TGG | - | chr2_3:1564417-1564436 | None:intergenic | 15.0% |
!! | AACAAAAAAAAAAATTGCAA+AGG | + | chr2_3:1565612-1565631 | Msa0270290:intron | 15.0% |
!! | TTGAATTGTGTAAATTATAA+AGG | - | chr2_3:1566026-1566045 | None:intergenic | 15.0% |
!!! | AATGCAAGCTATTTTATTTA+TGG | + | chr2_3:1564678-1564697 | Msa0270290:intron | 20.0% |
!! | TTTATGGTTTCTTAAATACT+TGG | + | chr2_3:1564694-1564713 | Msa0270290:intron | 20.0% |
!!! | TTGTTTTTGTTATTTTATGC+AGG | + | chr2_3:1565720-1565739 | Msa0270290:intron | 20.0% |
!!! | TGTTTTTGTTATTTTATGCA+GGG | + | chr2_3:1565721-1565740 | Msa0270290:intron | 20.0% |
!! | TAACAAATAAGTTAGAGATA+GGG | - | chr2_3:1566002-1566021 | None:intergenic | 20.0% |
!! | ATAACAAATAAGTTAGAGAT+AGG | - | chr2_3:1566003-1566022 | None:intergenic | 20.0% |
! | AAAATGTGATGAAATAGAAC+CGG | - | chr2_3:1563686-1563705 | None:intergenic | 25.0% |
! | TAAAAACGAATCATTTCTTC+AGG | - | chr2_3:1563910-1563929 | None:intergenic | 25.0% |
!!! | TGATTTTTTTAGTGTTGAAG+AGG | + | chr2_3:1564049-1564068 | Msa0270290:intron | 25.0% |
! | ACAAATACCTTCAAATTTCT+TGG | - | chr2_3:1564147-1564166 | None:intergenic | 25.0% |
! | CAATGAAATCTAATCTAAGT+CGG | - | chr2_3:1564178-1564197 | None:intergenic | 25.0% |
! | CTTTCTAATCTATAACAAAC+AGG | - | chr2_3:1564214-1564233 | None:intergenic | 25.0% |
! | AATAGGTCAATGAAATCTAA+GGG | - | chr2_3:1564467-1564486 | None:intergenic | 25.0% |
! | AAATAGGTCAATGAAATCTA+AGG | - | chr2_3:1564468-1564487 | None:intergenic | 25.0% |
! | TCTATTGTCTCAACTAAAAT+AGG | - | chr2_3:1564484-1564503 | None:intergenic | 25.0% |
!! | GAGACAATAGAAAATGATTT+TGG | + | chr2_3:1564493-1564512 | Msa0270290:intron | 25.0% |
! | ATTTATTTGAGAGCAACTTT+CGG | + | chr2_3:1564738-1564757 | Msa0270290:intron | 25.0% |
! | AATCAACTTAGAATGCAATT+TGG | - | chr2_3:1565796-1565815 | None:intergenic | 25.0% |
! | TTTGTAATGAAAACAGAACA+TGG | - | chr2_3:1565878-1565897 | None:intergenic | 25.0% |
!! | TGTTTTCATTACAAAGAATG+TGG | + | chr2_3:1565883-1565902 | Msa0270290:three_prime_UTR | 25.0% |
!! | GTTCAAAATTTTACATAAGC+AGG | - | chr2_3:1565934-1565953 | None:intergenic | 25.0% |
!! | GCTTATGTAAAATTTTGAAC+TGG | + | chr2_3:1565934-1565953 | Msa0270290:three_prime_UTR | 25.0% |
ATGAAATAGAACCGGTAATT+GGG | - | chr2_3:1563678-1563697 | None:intergenic | 30.0% | |
TTATGAAGAAACTTGTGCTA+AGG | + | chr2_3:1563927-1563946 | Msa0270290:CDS | 30.0% | |
TATGAAGAAACTTGTGCTAA+GGG | + | chr2_3:1563928-1563947 | Msa0270290:CDS | 30.0% | |
GATTTCATTGACCTAGTTTA+TGG | + | chr2_3:1564188-1564207 | Msa0270290:intron | 30.0% | |
ATTCTTAAAGAAGCCACAAA+TGG | + | chr2_3:1564440-1564459 | Msa0270290:intron | 30.0% | |
TTCTTAAAGAAGCCACAAAT+GGG | + | chr2_3:1564441-1564460 | Msa0270290:intron | 30.0% | |
GGATTTCAAACCATCATATA+TGG | + | chr2_3:1565440-1565459 | Msa0270290:CDS | 30.0% | |
TTTCAAACCATCATATATGG+AGG | + | chr2_3:1565443-1565462 | Msa0270290:CDS | 30.0% | |
TCAAATTCCTCCATATATGA+TGG | - | chr2_3:1565453-1565472 | None:intergenic | 30.0% | |
! | AGAGGTATGATAGAATAGAA+TGG | + | chr2_3:1565560-1565579 | Msa0270290:intron | 30.0% |
TACACATGATTCGTAAAACA+AGG | - | chr2_3:1565649-1565668 | None:intergenic | 30.0% | |
!! | GGAAGATTTTGATAGTAGTT+TGG | + | chr2_3:1565742-1565761 | Msa0270290:exon | 30.0% |
TACAAAGAATGTGGTATGTA+AGG | + | chr2_3:1565892-1565911 | Msa0270290:three_prime_UTR | 30.0% | |
!!! | TTTTGGTTTTGGTGAGAGTA+GGG | - | chr2_3:1563534-1563553 | None:intergenic | 35.0% |
!!! | TAGGGTTTTGGTTTTGGTTT+TGG | - | chr2_3:1563545-1563564 | None:intergenic | 35.0% |
GATGAAATAGAACCGGTAAT+TGG | - | chr2_3:1563679-1563698 | None:intergenic | 35.0% | |
AAACGAATCATTTCTTCAGG+TGG | - | chr2_3:1563907-1563926 | None:intergenic | 35.0% | |
GAAGAGTCCAAGAAATTTGA+AGG | + | chr2_3:1564137-1564156 | Msa0270290:CDS | 35.0% | |
TAACAAACAGGCCATAAACT+AGG | - | chr2_3:1564202-1564221 | None:intergenic | 35.0% | |
AGATTTCTCCCAAATTGTAC+TGG | - | chr2_3:1564817-1564836 | None:intergenic | 35.0% | |
GTACAATTTGGGAGAAATCT+AGG | + | chr2_3:1564817-1564836 | Msa0270290:CDS | 35.0% | |
! | TGTTGAGGTGGAAAATTTTG+TGG | - | chr2_3:1564949-1564968 | None:intergenic | 35.0% |
ATTCCTCCACAACAAAACAT+TGG | + | chr2_3:1564991-1565010 | Msa0270290:CDS | 35.0% | |
TATCCACCCAAACAAAACTA+TGG | + | chr2_3:1565096-1565115 | Msa0270290:CDS | 35.0% | |
!!! | GCTTGACCATAGTTTTGTTT+GGG | - | chr2_3:1565105-1565124 | None:intergenic | 35.0% |
!!! | AGCTTGACCATAGTTTTGTT+TGG | - | chr2_3:1565106-1565125 | None:intergenic | 35.0% |
!! | TGCTGTTTGGAATAGTTTTG+TGG | - | chr2_3:1565168-1565187 | None:intergenic | 35.0% |
TATTCCAAACAGCAAACCTA+TGG | + | chr2_3:1565174-1565193 | Msa0270290:CDS | 35.0% | |
AAAGAAGAAATTATGCGCCA+CGG | + | chr2_3:1565253-1565272 | Msa0270290:CDS | 35.0% | |
TAATCATGCTGAAGAACAGA+CGG | + | chr2_3:1565491-1565510 | Msa0270290:CDS | 35.0% | |
CGAATCATGTGTACTGTAAA+TGG | + | chr2_3:1565656-1565675 | Msa0270290:intron | 35.0% | |
CATTGTCACATACAATGTCT+TGG | - | chr2_3:1565972-1565991 | None:intergenic | 35.0% | |
!!! | GTTTTGGTTTTGGTGAGAGT+AGG | - | chr2_3:1563535-1563554 | None:intergenic | 40.0% |
!!! | AGAGAGTAGGGTTTTGGTTT+TGG | - | chr2_3:1563551-1563570 | None:intergenic | 40.0% |
! | TCGAGGTTGATCTGAATGAA+CGG | - | chr2_3:1563750-1563769 | None:intergenic | 40.0% |
AGAAGACAAGAGAGAAATCG+AGG | - | chr2_3:1563767-1563786 | None:intergenic | 40.0% | |
AAGGTTGCGATTACAATCAC+TGG | + | chr2_3:1563845-1563864 | Msa0270290:CDS | 40.0% | |
GTGCTAAGGGTTTCAATATC+AGG | + | chr2_3:1563941-1563960 | Msa0270290:CDS | 40.0% | |
TGCAGTACAACTGTTTACAC+TGG | + | chr2_3:1564092-1564111 | Msa0270290:CDS | 40.0% | |
ACAGGGTCAATGTAAGAATC+CGG | - | chr2_3:1564565-1564584 | None:intergenic | 40.0% | |
ACAGGAGATCAGTACATTGA+AGG | + | chr2_3:1564769-1564788 | Msa0270290:intron | 40.0% | |
TTTCTCCCAAATTGTACTGG+TGG | - | chr2_3:1564814-1564833 | None:intergenic | 40.0% | |
CAATTTGGGAGAAATCTAGG+AGG | + | chr2_3:1564820-1564839 | Msa0270290:CDS | 40.0% | |
AATCAATTGCCAAACAACCG+AGG | + | chr2_3:1564865-1564884 | Msa0270290:CDS | 40.0% | |
ATCAATTGCCAAACAACCGA+GGG | + | chr2_3:1564866-1564885 | Msa0270290:CDS | 40.0% | |
GGAATCCCTCTTACAACAAT+CGG | + | chr2_3:1564887-1564906 | Msa0270290:CDS | 40.0% | |
GAATCCCTCTTACAACAATC+GGG | + | chr2_3:1564888-1564907 | Msa0270290:CDS | 40.0% | |
GAATCCCGATTGTTGTAAGA+GGG | - | chr2_3:1564895-1564914 | None:intergenic | 40.0% | |
! | TGAGGTGGAAAATTTTGTGG+AGG | - | chr2_3:1564946-1564965 | None:intergenic | 40.0% |
TTTCCACCTCAACAGAACTA+TGG | + | chr2_3:1564955-1564974 | Msa0270290:CDS | 40.0% | |
!! | TGTTGGCCAATGTTTTGTTG+TGG | - | chr2_3:1565000-1565019 | None:intergenic | 40.0% |
GCCAACAACAACCAAATATC+CGG | + | chr2_3:1565013-1565032 | Msa0270290:CDS | 40.0% | |
ACCGGATATTTGGTTGTTGT+TGG | - | chr2_3:1565017-1565036 | None:intergenic | 40.0% | |
GCTGAATCAAACCGGATATT+TGG | - | chr2_3:1565027-1565046 | None:intergenic | 40.0% | |
!!! | TGACCATAGTTTTGTTTGGG+TGG | - | chr2_3:1565102-1565121 | None:intergenic | 40.0% |
! | TGCGAGGCTGAATAATTTTG+TGG | - | chr2_3:1565129-1565148 | None:intergenic | 40.0% |
TTTCTTCTTTCTCCTTCTCC+CGG | - | chr2_3:1565243-1565262 | None:intergenic | 40.0% | |
TTTCTTCTTTCTCCTTGTCC+TGG | - | chr2_3:1565345-1565364 | None:intergenic | 40.0% | |
GAATTTGAACAAGCCCAGAA+GGG | + | chr2_3:1565465-1565484 | Msa0270290:CDS | 40.0% | |
AATTTGAACAAGCCCAGAAG+GGG | + | chr2_3:1565466-1565485 | Msa0270290:CDS | 40.0% | |
AGCATGATTATTCCCCTTCT+GGG | - | chr2_3:1565481-1565500 | None:intergenic | 40.0% | |
AATCATGCTGAAGAACAGAC+GGG | + | chr2_3:1565492-1565511 | Msa0270290:CDS | 40.0% | |
CCTCTCCAGTAAAATTGCTA+GGG | - | chr2_3:1565545-1565564 | None:intergenic | 40.0% | |
ACCTCTCCAGTAAAATTGCT+AGG | - | chr2_3:1565546-1565565 | None:intergenic | 40.0% | |
TGATAGTAGTTTGGATCTCC+TGG | + | chr2_3:1565751-1565770 | Msa0270290:exon | 40.0% | |
GATAGTAGTTTGGATCTCCT+GGG | + | chr2_3:1565752-1565771 | Msa0270290:exon | 40.0% | |
! | GCAATTTGGTAACTTCAGCA+AGG | - | chr2_3:1565782-1565801 | None:intergenic | 40.0% |
GATTCGATTATTGACCCCAT+TGG | - | chr2_3:1565830-1565849 | None:intergenic | 40.0% | |
!!! | GAGTAGGGTTTTGAGAAGCT+TGG | - | chr2_3:1563519-1563538 | None:intergenic | 45.0% |
! | CGAGGTTGATCTGAATGAAC+GGG | - | chr2_3:1563749-1563768 | None:intergenic | 45.0% |
TCTCTCTTGTCTTCTCGCTA+CGG | + | chr2_3:1563772-1563791 | Msa0270290:CDS | 45.0% | |
TCAGAACTCAGTCCTGAGAT+TGG | + | chr2_3:1563802-1563821 | Msa0270290:CDS | 45.0% | |
TGTAATCGCAACCTTCGAAG+AGG | - | chr2_3:1563840-1563859 | None:intergenic | 45.0% | |
!! | GGTGGAGGTTTGTTATCTCT+GGG | - | chr2_3:1563889-1563908 | None:intergenic | 45.0% |
!! | AGGTGGAGGTTTGTTATCTC+TGG | - | chr2_3:1563890-1563909 | None:intergenic | 45.0% |
CGAATCATTTCTTCAGGTGG+AGG | - | chr2_3:1563904-1563923 | None:intergenic | 45.0% | |
GAAATCTAAGGGCCCATTTG+TGG | - | chr2_3:1564456-1564475 | None:intergenic | 45.0% | |
! | GGATTGTTGTGCTTTTCGAC+AGG | + | chr2_3:1564514-1564533 | Msa0270290:intron | 45.0% |
GGCAACACAAAGATAACTCC+GGG | - | chr2_3:1564544-1564563 | None:intergenic | 45.0% | |
CGGCAACACAAAGATAACTC+CGG | - | chr2_3:1564545-1564564 | None:intergenic | 45.0% | |
CGGAGTTATCTTTGTGTTGC+CGG | + | chr2_3:1564543-1564562 | Msa0270290:CDS | 45.0% | |
CTCCATACTGCTTGTTCACA+GGG | - | chr2_3:1564582-1564601 | None:intergenic | 45.0% | |
ATTTATCGTCTCTCGCGTTC+TGG | + | chr2_3:1564621-1564640 | Msa0270290:intron | 45.0% | |
! | CAACTTTCGGTGTGTGATAC+AGG | + | chr2_3:1564751-1564770 | Msa0270290:intron | 45.0% |
GACCTCCACCAGTACAATTT+GGG | + | chr2_3:1564806-1564825 | Msa0270290:CDS | 45.0% | |
TAGGAGGAAGACGAGACTAT+CGG | + | chr2_3:1564836-1564855 | Msa0270290:CDS | 45.0% | |
TGTTGTAAGAGGGATTCCCT+CGG | - | chr2_3:1564885-1564904 | None:intergenic | 45.0% | |
GGAATCCCGATTGTTGTAAG+AGG | - | chr2_3:1564896-1564915 | None:intergenic | 45.0% | |
CCATAGTTTCTACCATCCCT+TGG | - | chr2_3:1564922-1564941 | None:intergenic | 45.0% | |
CCAAGGGATGGTAGAAACTA+TGG | + | chr2_3:1564919-1564938 | Msa0270290:CDS | 45.0% | |
!! | TGGCCAATGTTTTGTTGTGG+AGG | - | chr2_3:1564997-1565016 | None:intergenic | 45.0% |
! | TGCTTGATCATAGCTCTGCT+GGG | - | chr2_3:1565067-1565086 | None:intergenic | 45.0% |
AGCTATGATCAAGCACCACA+AGG | + | chr2_3:1565072-1565091 | Msa0270290:CDS | 45.0% | |
GCTATGATCAAGCACCACAA+GGG | + | chr2_3:1565073-1565092 | Msa0270290:CDS | 45.0% | |
!! | AGGACCATAGGTTTGCTGTT+TGG | - | chr2_3:1565181-1565200 | None:intergenic | 45.0% |
CTTCTTCTGTCTACTTCTCC+CGG | - | chr2_3:1565294-1565313 | None:intergenic | 45.0% | |
! | TATGCGCCGCAGCAAAATTT+TGG | + | chr2_3:1565315-1565334 | Msa0270290:CDS | 45.0% |
AAATCCCATCCACCTTCACT+AGG | - | chr2_3:1565426-1565445 | None:intergenic | 45.0% | |
GGAATTTGAACAAGCCCAGA+AGG | + | chr2_3:1565464-1565483 | Msa0270290:CDS | 45.0% | |
CAGCATGATTATTCCCCTTC+TGG | - | chr2_3:1565482-1565501 | None:intergenic | 45.0% | |
ATCATGCTGAAGAACAGACG+GGG | + | chr2_3:1565493-1565512 | Msa0270290:CDS | 45.0% | |
AGGAGGCGGAAATCTTTGTT+GGG | - | chr2_3:1565520-1565539 | None:intergenic | 45.0% | |
! | CCCTAGCAATTTTACTGGAG+AGG | + | chr2_3:1565542-1565561 | Msa0270290:CDS | 45.0% |
TGATTGCATGTCCTTGCCAA+TGG | + | chr2_3:1565811-1565830 | Msa0270290:three_prime_UTR | 45.0% | |
GATTGCATGTCCTTGCCAAT+GGG | + | chr2_3:1565812-1565831 | Msa0270290:three_prime_UTR | 45.0% | |
ATTGCATGTCCTTGCCAATG+GGG | + | chr2_3:1565813-1565832 | Msa0270290:three_prime_UTR | 45.0% | |
GATTATTGACCCCATTGGCA+AGG | - | chr2_3:1565825-1565844 | None:intergenic | 45.0% | |
! | GGTTGGAGAGAGTAGGGTTT+TGG | - | chr2_3:1563557-1563576 | None:intergenic | 50.0% |
AATTAGCGACGATGCCATGG+CGG | - | chr2_3:1563581-1563600 | None:intergenic | 50.0% | |
GAGAATTAGCGACGATGCCA+TGG | - | chr2_3:1563584-1563603 | None:intergenic | 50.0% | |
AGCTACTGCGACTTCGCTTT+CGG | + | chr2_3:1563651-1563670 | Msa0270290:CDS | 50.0% | |
TCGCTTTCGGTCCCAATTAC+CGG | + | chr2_3:1563664-1563683 | Msa0270290:CDS | 50.0% | |
AAATCCCCAAACGTCGTCGA+CGG | + | chr2_3:1563715-1563734 | Msa0270290:CDS | 50.0% | |
! | ATGGTGTCAGGACCAATCTC+AGG | - | chr2_3:1563817-1563836 | None:intergenic | 50.0% |
ATCGCAACCTTCGAAGAGGA+TGG | - | chr2_3:1563836-1563855 | None:intergenic | 50.0% | |
! | TGCTTTTCGACAGGTTTGCC+CGG | + | chr2_3:1564523-1564542 | Msa0270290:intron | 50.0% |
GACCCTGTGAACAAGCAGTA+TGG | + | chr2_3:1564577-1564596 | Msa0270290:CDS | 50.0% | |
CCTCCATACTGCTTGTTCAC+AGG | - | chr2_3:1564583-1564602 | None:intergenic | 50.0% | |
CCTGTGAACAAGCAGTATGG+AGG | + | chr2_3:1564580-1564599 | Msa0270290:CDS | 50.0% | |
! | ATTGTACTGGTGGAGGTCGA+GGG | - | chr2_3:1564804-1564823 | None:intergenic | 50.0% |
! | AATTGTACTGGTGGAGGTCG+AGG | - | chr2_3:1564805-1564824 | None:intergenic | 50.0% |
CGACCTCCACCAGTACAATT+TGG | + | chr2_3:1564805-1564824 | Msa0270290:CDS | 50.0% | |
! | CTCCCAAATTGTACTGGTGG+AGG | - | chr2_3:1564811-1564830 | None:intergenic | 50.0% |
ACAATCGGGATTCCATGCCA+AGG | + | chr2_3:1564902-1564921 | Msa0270290:CDS | 50.0% | |
CAATCGGGATTCCATGCCAA+GGG | + | chr2_3:1564903-1564922 | Msa0270290:CDS | 50.0% | |
GTTTCTACCATCCCTTGGCA+TGG | - | chr2_3:1564917-1564936 | None:intergenic | 50.0% | |
! | TGGCCATAGTTCTGTTGAGG+TGG | - | chr2_3:1564961-1564980 | None:intergenic | 50.0% |
! | GCTTGGCCATAGTTCTGTTG+AGG | - | chr2_3:1564964-1564983 | None:intergenic | 50.0% |
GTGGAGGAATGTGTGATGCT+TGG | - | chr2_3:1564981-1565000 | None:intergenic | 50.0% | |
GCTGCGATGCTGAATCAAAC+CGG | - | chr2_3:1565035-1565054 | None:intergenic | 50.0% | |
! | GCTTGATCATAGCTCTGCTG+GGG | - | chr2_3:1565066-1565085 | None:intergenic | 50.0% |
! | GTGCTTGATCATAGCTCTGC+TGG | - | chr2_3:1565068-1565087 | None:intergenic | 50.0% |
TGTTTGGGTGGATACCCTTG+TGG | - | chr2_3:1565090-1565109 | None:intergenic | 50.0% | |
CGCTTGATTGAAGTTCTGCG+AGG | - | chr2_3:1565145-1565164 | None:intergenic | 50.0% | |
TATCCACCACAGCAGAGCTT+TGG | + | chr2_3:1565213-1565232 | Msa0270290:CDS | 50.0% | |
TTCTTTCTCCTTGTCCTGGC+GGG | - | chr2_3:1565341-1565360 | None:intergenic | 50.0% | |
CTTCTTTCTCCTTGTCCTGG+CGG | - | chr2_3:1565342-1565361 | None:intergenic | 50.0% | |
TATGCGCCACAGCAGAACTT+TGG | + | chr2_3:1565366-1565385 | Msa0270290:CDS | 50.0% | |
ACAGCAGAACTTTGGACCAC+CGG | + | chr2_3:1565374-1565393 | Msa0270290:CDS | 50.0% | |
TTTCCTCTTTCTCCCTGTCC+CGG | - | chr2_3:1565396-1565415 | None:intergenic | 50.0% | |
GGAAACTCTGTGCCTAGTGA+AGG | + | chr2_3:1565411-1565430 | Msa0270290:CDS | 50.0% | |
AACTCTGTGCCTAGTGAAGG+TGG | + | chr2_3:1565414-1565433 | Msa0270290:CDS | 50.0% | |
TGTGCCTAGTGAAGGTGGAT+GGG | + | chr2_3:1565419-1565438 | Msa0270290:CDS | 50.0% | |
CAGGAGGCGGAAATCTTTGT+TGG | - | chr2_3:1565521-1565540 | None:intergenic | 50.0% | |
CAACAAAGATTTCCGCCTCC+TGG | + | chr2_3:1565519-1565538 | Msa0270290:CDS | 50.0% | |
GTAAAATTGCTAGGGCCAGG+AGG | - | chr2_3:1565537-1565556 | None:intergenic | 50.0% | |
CCAGTAAAATTGCTAGGGCC+AGG | - | chr2_3:1565540-1565559 | None:intergenic | 50.0% | |
! | CCTGGCCCTAGCAATTTTAC+TGG | + | chr2_3:1565537-1565556 | Msa0270290:CDS | 50.0% |
AGTAGTTTGGATCTCCTGGG+AGG | + | chr2_3:1565755-1565774 | Msa0270290:three_prime_UTR | 50.0% | |
TTACATAAGCAGGCAGCAGC+TGG | - | chr2_3:1565924-1565943 | None:intergenic | 50.0% | |
AGAGTGATCTCAGGCTACGG+CGG | - | chr2_3:1563609-1563628 | None:intergenic | 55.0% | |
CGGAGAGTGATCTCAGGCTA+CGG | - | chr2_3:1563612-1563631 | None:intergenic | 55.0% | |
CGTAGCCTGAGATCACTCTC+CGG | + | chr2_3:1563610-1563629 | Msa0270290:CDS | 55.0% | |
TAGCTGAGAAGGAGTGGTGG+AGG | - | chr2_3:1563636-1563655 | None:intergenic | 55.0% | |
CAGTAGCTGAGAAGGAGTGG+TGG | - | chr2_3:1563639-1563658 | None:intergenic | 55.0% | |
TCGCAGTAGCTGAGAAGGAG+TGG | - | chr2_3:1563642-1563661 | None:intergenic | 55.0% | |
CGAAGTCGCAGTAGCTGAGA+AGG | - | chr2_3:1563647-1563666 | None:intergenic | 55.0% | |
CCTTCGAAGAGGATGGTGTC+AGG | - | chr2_3:1563829-1563848 | None:intergenic | 55.0% | |
CCTGACACCATCCTCTTCGA+AGG | + | chr2_3:1563826-1563845 | Msa0270290:CDS | 55.0% | |
GAGGGATTCCCTCGGTTGTT+TGG | - | chr2_3:1564877-1564896 | None:intergenic | 55.0% | |
! | TGATCATAGCTCTGCTGGGG+TGG | - | chr2_3:1565063-1565082 | None:intergenic | 55.0% |
!! | CTCTGCTGTGGTGGATACTG+TGG | - | chr2_3:1565210-1565229 | None:intergenic | 55.0% |
!! | ACAGCAGAGCTTTGGACCAC+CGG | + | chr2_3:1565221-1565240 | Msa0270290:CDS | 55.0% |
CTTCTTTCTCCTTCTCCCGG+TGG | - | chr2_3:1565240-1565259 | None:intergenic | 55.0% | |
TATGCGCCACGGCAGAACTT+TGG | + | chr2_3:1565264-1565283 | Msa0270290:CDS | 55.0% | |
ATGCGCCACGGCAGAACTTT+GGG | + | chr2_3:1565265-1565284 | Msa0270290:CDS | 55.0% | |
CTTCTGTCTACTTCTCCCGG+TGG | - | chr2_3:1565291-1565310 | None:intergenic | 55.0% | |
! | GGCGGGCCAAAATTTTGCTG+CGG | - | chr2_3:1565324-1565343 | None:intergenic | 55.0% |
!! | CAGCAAAATTTTGGCCCGCC+AGG | + | chr2_3:1565324-1565343 | Msa0270290:CDS | 55.0% |
!! | AATTTTGGCCCGCCAGGACA+AGG | + | chr2_3:1565330-1565349 | Msa0270290:CDS | 55.0% |
GGTGGTCCAAAGTTCTGCTG+TGG | - | chr2_3:1565375-1565394 | None:intergenic | 55.0% | |
CAGCAGAACTTTGGACCACC+GGG | + | chr2_3:1565375-1565394 | Msa0270290:CDS | 55.0% | |
AACTTTGGACCACCGGGACA+GGG | + | chr2_3:1565381-1565400 | Msa0270290:CDS | 55.0% | |
CTGTGCCTAGTGAAGGTGGA+TGG | + | chr2_3:1565418-1565437 | Msa0270290:CDS | 55.0% | |
AAATTGCTAGGGCCAGGAGG+CGG | - | chr2_3:1565534-1565553 | None:intergenic | 55.0% | |
AACTTCAGCAAGGACCTCCC+AGG | - | chr2_3:1565772-1565791 | None:intergenic | 55.0% | |
GGCGGTGGTTGGAGAGAGTA+GGG | - | chr2_3:1563563-1563582 | None:intergenic | 60.0% | |
TGGCGGTGGTTGGAGAGAGT+AGG | - | chr2_3:1563564-1563583 | None:intergenic | 60.0% | |
ACTCTCTCCAACCACCGCCA+TGG | + | chr2_3:1563564-1563583 | Msa0270290:exon | 60.0% | |
! | TGAGAAGGAGTGGTGGAGGC+CGG | - | chr2_3:1563632-1563651 | None:intergenic | 60.0% |
AACGCCGTCGACGACGTTTG+GGG | - | chr2_3:1563722-1563741 | None:intergenic | 60.0% | |
GAACGCCGTCGACGACGTTT+GGG | - | chr2_3:1563723-1563742 | None:intergenic | 60.0% | |
TGAACGCCGTCGACGACGTT+TGG | - | chr2_3:1563724-1563743 | None:intergenic | 60.0% | |
CGGGATTCCATGCCAAGGGA+TGG | + | chr2_3:1564907-1564926 | Msa0270290:CDS | 60.0% | |
CTGTGGCGAAGCAGGACCAT+AGG | - | chr2_3:1565193-1565212 | None:intergenic | 60.0% | |
GGTGGATACTGTGGCGAAGC+AGG | - | chr2_3:1565201-1565220 | None:intergenic | 60.0% | |
GGTCCAAAGCTCTGCTGTGG+TGG | - | chr2_3:1565219-1565238 | None:intergenic | 60.0% | |
GGTGGTCCAAAGCTCTGCTG+TGG | - | chr2_3:1565222-1565241 | None:intergenic | 60.0% | |
!! | CAGCAGAGCTTTGGACCACC+GGG | + | chr2_3:1565222-1565241 | Msa0270290:CDS | 60.0% |
!! | AGCTTTGGACCACCGGGAGA+AGG | + | chr2_3:1565228-1565247 | Msa0270290:CDS | 60.0% |
ACGGCAGAACTTTGGGCCAC+CGG | + | chr2_3:1565272-1565291 | Msa0270290:CDS | 60.0% | |
GAACTTTGGACCACCGGGAC+AGG | + | chr2_3:1565380-1565399 | Msa0270290:CDS | 60.0% | |
GACGATGCCATGGCGGTGGT+TGG | - | chr2_3:1563574-1563593 | None:intergenic | 65.0% | |
TAGCGACGATGCCATGGCGG+TGG | - | chr2_3:1563578-1563597 | None:intergenic | 65.0% | |
GTGATCTCAGGCTACGGCGG+AGG | - | chr2_3:1563606-1563625 | None:intergenic | 65.0% | |
GGAGGCCGGAGAGTGATCTC+AGG | - | chr2_3:1563618-1563637 | None:intergenic | 65.0% | |
GGTGGCCCAAAGTTCTGCCG+TGG | - | chr2_3:1565273-1565292 | None:intergenic | 65.0% | |
CGGCAGAACTTTGGGCCACC+GGG | + | chr2_3:1565273-1565292 | Msa0270290:CDS | 65.0% | |
CCTCTTTCTCCCTGTCCCGG+TGG | - | chr2_3:1565393-1565412 | None:intergenic | 65.0% | |
CCACCGGGACAGGGAGAAAG+AGG | + | chr2_3:1565390-1565409 | Msa0270290:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_3 | gene | 1563499 | 1566080 | 1563499 | ID=Msa0270290;Name=Msa0270290 |
chr2_3 | mRNA | 1563499 | 1566080 | 1563499 | ID=Msa0270290-mRNA-1;Parent=Msa0270290;Name=Msa0270290-mRNA-1;_AED=0.01;_eAED=0.01;_QI=84|1|1|1|1|1|5|327|448 |
chr2_3 | exon | 1563499 | 1563962 | 1563499 | ID=Msa0270290-mRNA-1:exon:641;Parent=Msa0270290-mRNA-1 |
chr2_3 | exon | 1564061 | 1564158 | 1564061 | ID=Msa0270290-mRNA-1:exon:642;Parent=Msa0270290-mRNA-1 |
chr2_3 | exon | 1564536 | 1564601 | 1564536 | ID=Msa0270290-mRNA-1:exon:643;Parent=Msa0270290-mRNA-1 |
chr2_3 | exon | 1564773 | 1565563 | 1564773 | ID=Msa0270290-mRNA-1:exon:644;Parent=Msa0270290-mRNA-1 |
chr2_3 | exon | 1565742 | 1566080 | 1565742 | ID=Msa0270290-mRNA-1:exon:645;Parent=Msa0270290-mRNA-1 |
chr2_3 | five_prime_UTR | 1563499 | 1563582 | 1563499 | ID=Msa0270290-mRNA-1:five_prime_utr;Parent=Msa0270290-mRNA-1 |
chr2_3 | CDS | 1563583 | 1563962 | 1563583 | ID=Msa0270290-mRNA-1:cds;Parent=Msa0270290-mRNA-1 |
chr2_3 | CDS | 1564061 | 1564158 | 1564061 | ID=Msa0270290-mRNA-1:cds;Parent=Msa0270290-mRNA-1 |
chr2_3 | CDS | 1564536 | 1564601 | 1564536 | ID=Msa0270290-mRNA-1:cds;Parent=Msa0270290-mRNA-1 |
chr2_3 | CDS | 1564773 | 1565563 | 1564773 | ID=Msa0270290-mRNA-1:cds;Parent=Msa0270290-mRNA-1 |
chr2_3 | CDS | 1565742 | 1565753 | 1565742 | ID=Msa0270290-mRNA-1:cds;Parent=Msa0270290-mRNA-1 |
chr2_3 | three_prime_UTR | 1565754 | 1566080 | 1565754 | ID=Msa0270290-mRNA-1:three_prime_utr;Parent=Msa0270290-mRNA-1 |
Gene Sequence |
Protein sequence |