Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0188380 | Msa0231130 | 0.858372 | 8.622444e-63 | -8.615850e-47 |
| Msa0231130 | Msa0270290 | 0.906342 | 1.644349e-80 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 177 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCATGATTATTCCCCTTC+TGG | 0.152275 | 2_2:+3325663 | None:intergenic |
| ACAAATACCTTCAAATTTCT+TGG | 0.193516 | 2_2:+3327057 | None:intergenic |
| GCTGAATCAAACCGGATATT+TGG | 0.205342 | 2_2:+3326118 | None:intergenic |
| TATGCGCCGCAGCAAAATTT+TGG | 0.234811 | 2_2:-3325827 | Msa0231130:CDS |
| TTGAATTGTGTAAATTATAA+AGG | 0.249285 | 2_2:+3325122 | None:intergenic |
| GATGAAATAGAACCGGTAAT+TGG | 0.256818 | 2_2:+3327525 | None:intergenic |
| AGGTGGAGGTTTGTTATCTC+TGG | 0.258166 | 2_2:+3327314 | None:intergenic |
| GTGCTAAGGGTTTCAATATC+AGG | 0.262167 | 2_2:-3327260 | Msa0231130:intron |
| CGACCTCCACCAGTACAATT+TGG | 0.262627 | 2_2:-3326337 | Msa0231130:five_prime_UTR |
| TCGCTTTCGGTCCCAATTAC+CGG | 0.272059 | 2_2:-3327537 | Msa0231130:five_prime_UTR |
| CGGAGTTATCTTTGTGTTGC+CGG | 0.290339 | 2_2:-3326632 | Msa0231130:five_prime_UTR |
| GGTTGGAGAGAGTAGGGTTT+TGG | 0.304529 | 2_2:+3327647 | None:intergenic |
| AATCAACTTAGAATGCAATT+TGG | 0.312821 | 2_2:+3325353 | None:intergenic |
| AGCTATTGCGACTTCGCTTT+CGG | 0.319321 | 2_2:-3327550 | Msa0231130:five_prime_UTR |
| TGAACGCCGTCGACGACGTT+TGG | 0.320333 | 2_2:+3327480 | None:intergenic |
| ATAACAAATAAGTTAGAGAT+AGG | 0.328503 | 2_2:+3325145 | None:intergenic |
| GGATTTCAAACCATCATATA+TGG | 0.330866 | 2_2:-3325702 | Msa0231130:CDS |
| GAACGCCGTCGACGACGTTT+GGG | 0.334529 | 2_2:+3327481 | None:intergenic |
| GTGCTTGATCATAGCTCTGC+TGG | 0.368496 | 2_2:+3326077 | None:intergenic |
| GAGGGATTCCCTCGGTTGTT+TGG | 0.372916 | 2_2:+3326268 | None:intergenic |
| ATGCGCCACGGCAGAACTTT+GGG | 0.375645 | 2_2:-3325877 | Msa0231130:five_prime_UTR |
| TGATAGTAGTTTGGATCTCC+TGG | 0.381637 | 2_2:-3325395 | Msa0231130:CDS |
| AGCATGATTATTCCCCTTCT+GGG | 0.387365 | 2_2:+3325664 | None:intergenic |
| CCAAGGGATGGTAGAAACTA+TGG | 0.387810 | 2_2:-3326223 | Msa0231130:five_prime_UTR |
| ATGTCAAATACGACGTCGTT+TGG | 0.388549 | 2_2:+3325083 | None:intergenic |
| TTCTTTCTCCTTGTCCTGGC+GGG | 0.390261 | 2_2:+3325804 | None:intergenic |
| CCTCCATACTGCTTGTTCAC+AGG | 0.391130 | 2_2:+3326595 | None:intergenic |
| TACAAAGAATGTGGTATGTA+AGG | 0.397330 | 2_2:-3325254 | Msa0231130:three_prime_UTR |
| TATGCGCCACGGCAGAACTT+TGG | 0.400286 | 2_2:-3325878 | Msa0231130:five_prime_UTR |
| ATGAAATAGAACCGGTAATT+GGG | 0.400337 | 2_2:+3327526 | None:intergenic |
| TTTCCACCTCAACAGAACTA+TGG | 0.401446 | 2_2:-3326187 | Msa0231130:five_prime_UTR |
| TGCTTGATCATAGCTCTGCT+GGG | 0.408969 | 2_2:+3326078 | None:intergenic |
| ACCGGATATTTGGTTGTTGT+TGG | 0.414885 | 2_2:+3326128 | None:intergenic |
| GGAATCCCTCTTACAACAAT+CGG | 0.421869 | 2_2:-3326255 | Msa0231130:five_prime_UTR |
| GTACAATTTGGGAGAAATCT+AGG | 0.426083 | 2_2:-3326325 | Msa0231130:five_prime_UTR |
| TTTCTTCTTTCTCCTTGTCC+TGG | 0.430267 | 2_2:+3325800 | None:intergenic |
| GACCTCCACCAGTACAATTT+GGG | 0.430347 | 2_2:-3326336 | Msa0231130:five_prime_UTR |
| AGGACCATAGGTTTGCTGTT+TGG | 0.430424 | 2_2:+3325964 | None:intergenic |
| TATCCACCCAAACAAAACTA+TGG | 0.437816 | 2_2:-3326046 | Msa0231130:five_prime_UTR |
| GACCCTGTGAACAAGCAGTA+TGG | 0.438673 | 2_2:-3326598 | Msa0231130:five_prime_UTR |
| CGAATCATTTCTTCAGGTGG+AGG | 0.439284 | 2_2:+3327300 | None:intergenic |
| TATGCGCCACAGCAGAACTT+TGG | 0.449668 | 2_2:-3325776 | Msa0231130:CDS |
| GATTGCATGTCCTTGCCAAT+GGG | 0.450211 | 2_2:-3325334 | Msa0231130:three_prime_UTR |
| TTTCTTCTTTCTCCTTCTCC+CGG | 0.453717 | 2_2:+3325902 | None:intergenic |
| GAAGAGTCCAAGAAATTTGA+AGG | 0.456510 | 2_2:-3327064 | Msa0231130:intron |
| CAGGAGGCGGAAATCTTTGT+TGG | 0.457098 | 2_2:+3325624 | None:intergenic |
| AACTTCAGCAAGGGCCTCCC+AGG | 0.457480 | 2_2:+3325377 | None:intergenic |
| GCCAACAACAACCAAATATC+CGG | 0.458194 | 2_2:-3326129 | Msa0231130:five_prime_UTR |
| TCAAATTCCTCCATATATGA+TGG | 0.460060 | 2_2:+3325692 | None:intergenic |
| TTTCCTCTTTCTCCCTGTCC+CGG | 0.461374 | 2_2:+3325749 | None:intergenic |
| TATCCACCACAGCAGAGCTT+TGG | 0.463958 | 2_2:-3325929 | Msa0231130:five_prime_UTR |
| GAACTTTGGACCACCGGGAC+AGG | 0.464751 | 2_2:-3325762 | Msa0231130:CDS |
| CGAGGTTGATCTGAATGAAC+GGG | 0.468117 | 2_2:+3327455 | None:intergenic |
| ACAGCAGAGCTTTGGACCAC+CGG | 0.470038 | 2_2:-3325921 | Msa0231130:five_prime_UTR |
| GGAATCCCGATTGTTGTAAG+AGG | 0.470092 | 2_2:+3326249 | None:intergenic |
| CAACAAAGATTTCCGCCTCC+TGG | 0.472277 | 2_2:-3325623 | Msa0231130:CDS |
| AGATTTCTCCCAAATTGTAC+TGG | 0.474613 | 2_2:+3326328 | None:intergenic |
| AATTGTACTGGTGGAGGTCG+AGG | 0.477720 | 2_2:+3326340 | None:intergenic |
| GATTCGATTATTGACCCCAT+TGG | 0.480674 | 2_2:+3325319 | None:intergenic |
| CGGCAGAACTTTGGGCCACC+GGG | 0.483926 | 2_2:-3325869 | Msa0231130:five_prime_UTR |
| TTATGAAGAAACTTGTGCTA+AGG | 0.485239 | 2_2:-3327274 | Msa0231130:five_prime_UTR |
| ACGGCAGAACTTTGGGCCAC+CGG | 0.489335 | 2_2:-3325870 | Msa0231130:five_prime_UTR |
| TATGAAGAAACTTGTGCTAA+GGG | 0.489463 | 2_2:-3327273 | Msa0231130:five_prime_UTR |
| ATGGTGTCAGGACCAATCTC+AGG | 0.489874 | 2_2:+3327387 | None:intergenic |
| CGAAGTCGCAATAGCTGAGA+AGG | 0.492059 | 2_2:+3327557 | None:intergenic |
| GGTGGAGGTTTGTTATCTCT+GGG | 0.493016 | 2_2:+3327315 | None:intergenic |
| CCTTCGAAGAGGATGGTGTC+AGG | 0.493439 | 2_2:+3327375 | None:intergenic |
| CTCCATACTGCTTGTTCACA+GGG | 0.493888 | 2_2:+3326596 | None:intergenic |
| CCAGTAAAATTGCTAGGGCC+AGG | 0.494495 | 2_2:+3325605 | None:intergenic |
| CCACCGGGACAGGGAGAAAG+AGG | 0.494921 | 2_2:-3325752 | Msa0231130:CDS |
| TAACATAAGCAGGCAGCAGC+TGG | 0.496993 | 2_2:+3325225 | None:intergenic |
| CTCCCAAATTGTACTGGTGG+AGG | 0.499376 | 2_2:+3326334 | None:intergenic |
| TCAGAACTCAGTCCTGAGAT+TGG | 0.500163 | 2_2:-3327399 | Msa0231130:five_prime_UTR |
| AGGAGGCGGAAATCTTTGTT+GGG | 0.503310 | 2_2:+3325625 | None:intergenic |
| ACAGCAGAACTTTGGACCAC+CGG | 0.505295 | 2_2:-3325768 | Msa0231130:CDS |
| GATAGTAGTTTGGATCTCCT+GGG | 0.505442 | 2_2:-3325394 | Msa0231130:CDS |
| GGCGGTGGTTGGAGAGAGTA+GGG | 0.506484 | 2_2:+3327641 | None:intergenic |
| ACAGGGTCAATGTAAGAATC+CGG | 0.508563 | 2_2:+3326613 | None:intergenic |
| TGATTGCATGTCCTTGCCAA+TGG | 0.509203 | 2_2:-3325335 | Msa0231130:three_prime_UTR |
| AAAATGTGATGAAATAGAAC+CGG | 0.509305 | 2_2:+3327518 | None:intergenic |
| TCTCTCTTGTCTTCTCGCTA+CGG | 0.509897 | 2_2:-3327429 | Msa0231130:five_prime_UTR |
| CTTCTTCTGTCTACTTCTCC+CGG | 0.510565 | 2_2:+3325851 | None:intergenic |
| TGAGAAGGAGTGGTGGAGGC+CGG | 0.512480 | 2_2:+3327572 | None:intergenic |
| TAACAAATAAGTTAGAGATA+GGG | 0.512918 | 2_2:+3325146 | None:intergenic |
| AAGGTTGCGATTACAATCAC+TGG | 0.516564 | 2_2:-3327356 | Msa0231130:five_prime_UTR |
| TATTCCAAACAGCAAACCTA+TGG | 0.521162 | 2_2:-3325968 | Msa0231130:five_prime_UTR |
| GAGAATTAGCGACGATGCCA+TGG | 0.522594 | 2_2:+3327620 | None:intergenic |
| GCTGCGATGCTGAATCAAAC+CGG | 0.524624 | 2_2:+3326110 | None:intergenic |
| CTGTGCCTAGTGAAGGTGGA+TGG | 0.529404 | 2_2:-3325724 | Msa0231130:CDS |
| GTGATCTCAGGCTACGGCGG+AGG | 0.532432 | 2_2:+3327598 | None:intergenic |
| GGTGGATACTGTGGCGAAGC+AGG | 0.533094 | 2_2:+3325944 | None:intergenic |
| CCATAGTTTCTACCATCCCT+TGG | 0.533589 | 2_2:+3326223 | None:intergenic |
| TGCAGTACAACTGTTTACAC+TGG | 0.536636 | 2_2:-3327109 | Msa0231130:five_prime_UTR |
| ACCTCTCCAGTAAAATTGCT+AGG | 0.537861 | 2_2:+3325599 | None:intergenic |
| CATTGTCACATACAATGTCT+TGG | 0.540618 | 2_2:+3325176 | None:intergenic |
| AAACGAATCATTTCTTCAGG+TGG | 0.541590 | 2_2:+3327297 | None:intergenic |
| GAATCCCTCTTACAACAATC+GGG | 0.542891 | 2_2:-3326254 | Msa0231130:five_prime_UTR |
| AGCTTTGGACCACCGGGAGA+AGG | 0.543753 | 2_2:-3325914 | Msa0231130:five_prime_UTR |
| GGAATTTGAACAAGCCCAGA+AGG | 0.546452 | 2_2:-3325678 | Msa0231130:CDS |
| AAATCCCATCCACCTTCACT+AGG | 0.549954 | 2_2:+3325719 | None:intergenic |
| TGATCATAGCTCTGCTGGGG+TGG | 0.551769 | 2_2:+3326082 | None:intergenic |
| CTTCTTTCTCCTTGTCCTGG+CGG | 0.551794 | 2_2:+3325803 | None:intergenic |
| TAGCGACGATGCCATGGCGG+TGG | 0.552180 | 2_2:+3327626 | None:intergenic |
| GACGATGCCATGGCGGTGGT+TGG | 0.556448 | 2_2:+3327630 | None:intergenic |
| CTGTGGCGAAGCAGGACCAT+AGG | 0.556513 | 2_2:+3325952 | None:intergenic |
| GTGGAGGAATGTGTGATGCT+TGG | 0.556911 | 2_2:+3326164 | None:intergenic |
| GGTCCAAAGCTCTGCTGTGG+TGG | 0.557931 | 2_2:+3325926 | None:intergenic |
| TTTCTCCCAAATTGTACTGG+TGG | 0.558252 | 2_2:+3326331 | None:intergenic |
| ACAGGAGATCAGTACATTGA+AGG | 0.559699 | 2_2:-3326373 | Msa0231130:intron |
| TCGAGGTTGATCTGAATGAA+CGG | 0.562081 | 2_2:+3327454 | None:intergenic |
| AACGCCGTCGACGACGTTTG+GGG | 0.563351 | 2_2:+3327482 | None:intergenic |
| GTTTCTACCATCCCTTGGCA+TGG | 0.563433 | 2_2:+3326228 | None:intergenic |
| TGGCGGTGGTTGGAGAGAGT+AGG | 0.564065 | 2_2:+3327640 | None:intergenic |
| TGTGCCTAGTGAAGGTGGAT+GGG | 0.564317 | 2_2:-3325723 | Msa0231130:CDS |
| GGCAACACAAAGATAACTCC+GGG | 0.564421 | 2_2:+3326634 | None:intergenic |
| CAGCAGAACTTTGGACCACC+GGG | 0.568755 | 2_2:-3325767 | Msa0231130:CDS |
| AACTCTGTGCCTAGTGAAGG+TGG | 0.569286 | 2_2:-3325728 | Msa0231130:CDS |
| CAGCAGAGCTTTGGACCACC+GGG | 0.574321 | 2_2:-3325920 | Msa0231130:five_prime_UTR |
| CGGCAACACAAAGATAACTC+CGG | 0.575792 | 2_2:+3326633 | None:intergenic |
| GATTATTGACCCCATTGGCA+AGG | 0.576302 | 2_2:+3325324 | None:intergenic |
| GGAGGCCGGAGAGTGATCTC+AGG | 0.580525 | 2_2:+3327586 | None:intergenic |
| CCTGACACCATCCTCTTCGA+AGG | 0.582398 | 2_2:-3327375 | Msa0231130:five_prime_UTR |
| TAATCATGCTGAAGAACAGA+CGG | 0.584349 | 2_2:-3325651 | Msa0231130:CDS |
| TAGCTGAGAAGGAGTGGTGG+AGG | 0.585752 | 2_2:+3327568 | None:intergenic |
| GGAAACTCTGTGCCTAGTGA+AGG | 0.586295 | 2_2:-3325731 | Msa0231130:CDS |
| GAATCCCGATTGTTGTAAGA+GGG | 0.586300 | 2_2:+3326250 | None:intergenic |
| AACTTTGGACCACCGGGACA+GGG | 0.587378 | 2_2:-3325761 | Msa0231130:CDS |
| CCTCTTTCTCCCTGTCCCGG+TGG | 0.592801 | 2_2:+3325752 | None:intergenic |
| CCTCTCCAGTAAAATTGCTA+GGG | 0.592900 | 2_2:+3325600 | None:intergenic |
| CAATTTGGTAACTTCAGCAA+GGG | 0.593519 | 2_2:+3325368 | None:intergenic |
| TAGGAGGAAGACGAGACTAT+CGG | 0.594936 | 2_2:-3326306 | Msa0231130:five_prime_UTR |
| CGGGATTCCATGCCAAGGGA+TGG | 0.595865 | 2_2:-3326235 | Msa0231130:five_prime_UTR |
| AGCTATGATCAAGCACCACA+AGG | 0.596634 | 2_2:-3326070 | Msa0231130:five_prime_UTR |
| CTCTGCTGTGGTGGATACTG+TGG | 0.600550 | 2_2:+3325935 | None:intergenic |
| CGGAGAGTGATCTCAGGCTA+CGG | 0.601292 | 2_2:+3327592 | None:intergenic |
| TGGCCATAGTTCTGTTGAGG+TGG | 0.603738 | 2_2:+3326184 | None:intergenic |
| GCTTGGCCATAGTTCTGTTG+AGG | 0.603846 | 2_2:+3326181 | None:intergenic |
| ATTGTACTGGTGGAGGTCGA+GGG | 0.609778 | 2_2:+3326341 | None:intergenic |
| AAATTGCTAGGGCCAGGAGG+CGG | 0.610340 | 2_2:+3325611 | None:intergenic |
| ATCAATTGCCAAACAACCGA+GGG | 0.610471 | 2_2:-3326276 | Msa0231130:five_prime_UTR |
| CTTCTTTCTCCTTCTCCCGG+TGG | 0.610979 | 2_2:+3325905 | None:intergenic |
| TGTTGTAAGAGGGATTCCCT+CGG | 0.611597 | 2_2:+3326260 | None:intergenic |
| AATCATGCTGAAGAACAGAC+GGG | 0.612561 | 2_2:-3325650 | Msa0231130:CDS |
| TCGCAATAGCTGAGAAGGAG+TGG | 0.613314 | 2_2:+3327562 | None:intergenic |
| GCAATTTGGTAACTTCAGCA+AGG | 0.614998 | 2_2:+3325367 | None:intergenic |
| AAATCCCCAAACGTCGTCGA+CGG | 0.615141 | 2_2:-3327486 | Msa0231130:five_prime_UTR |
| ATCGCAACCTTCGAAGAGGA+TGG | 0.615614 | 2_2:+3327368 | None:intergenic |
| GGTGGTCCAAAGTTCTGCTG+TGG | 0.619499 | 2_2:+3325770 | None:intergenic |
| ACTCTCTCCAACCACCGCCA+TGG | 0.624268 | 2_2:-3327637 | Msa0231130:five_prime_UTR |
| GGTGGCCCAAAGTTCTGCCG+TGG | 0.626931 | 2_2:+3325872 | None:intergenic |
| TTTGTAATGAAAACAGAACA+TGG | 0.627428 | 2_2:+3325271 | None:intergenic |
| GGTGGTCCAAAGCTCTGCTG+TGG | 0.627905 | 2_2:+3325923 | None:intergenic |
| GAATTTGAACAAGCCCAGAA+GGG | 0.628457 | 2_2:-3325677 | Msa0231130:CDS |
| AGAAGACAAGAGAGAAATCG+AGG | 0.630277 | 2_2:+3327437 | None:intergenic |
| TTTCAAACCATCATATATGG+AGG | 0.632324 | 2_2:-3325699 | Msa0231130:CDS |
| ATTCCTCCACAACAAAACAT+TGG | 0.633304 | 2_2:-3326151 | Msa0231130:five_prime_UTR |
| CAATCGGGATTCCATGCCAA+GGG | 0.634508 | 2_2:-3326239 | Msa0231130:five_prime_UTR |
| ATTGCATGTCCTTGCCAATG+GGG | 0.637692 | 2_2:-3325333 | Msa0231130:three_prime_UTR |
| AATTTGAACAAGCCCAGAAG+GGG | 0.637787 | 2_2:-3325676 | Msa0231130:CDS |
| ACAATCGGGATTCCATGCCA+AGG | 0.637883 | 2_2:-3326240 | Msa0231130:five_prime_UTR |
| AAAGAAGAAATTATGCGCCA+CGG | 0.637957 | 2_2:-3325889 | Msa0231130:five_prime_UTR |
| AATCAATTGCCAAACAACCG+AGG | 0.644295 | 2_2:-3326277 | Msa0231130:five_prime_UTR |
| CGCTTGATTGAAGTTCTGCG+AGG | 0.644978 | 2_2:+3326000 | None:intergenic |
| GCTTGATCATAGCTCTGCTG+GGG | 0.651267 | 2_2:+3326079 | None:intergenic |
| TGTAATCGCAACCTTCGAAG+AGG | 0.655228 | 2_2:+3327364 | None:intergenic |
| CAATAGCTGAGAAGGAGTGG+TGG | 0.660749 | 2_2:+3327565 | None:intergenic |
| TGTTTGGGTGGATACCCTTG+TGG | 0.664703 | 2_2:+3326055 | None:intergenic |
| GTAAAATTGCTAGGGCCAGG+AGG | 0.666157 | 2_2:+3325608 | None:intergenic |
| CCTGTGAACAAGCAGTATGG+AGG | 0.671051 | 2_2:-3326595 | Msa0231130:intron |
| GCTATGATCAAGCACCACAA+GGG | 0.671691 | 2_2:-3326069 | Msa0231130:five_prime_UTR |
| AGTAGTTTGGATCTCCTGGG+AGG | 0.674182 | 2_2:-3325391 | Msa0231130:CDS |
| CGTAGCCTGAGATCACTCTC+CGG | 0.691705 | 2_2:-3327591 | Msa0231130:five_prime_UTR |
| CTTCTGTCTACTTCTCCCGG+TGG | 0.703848 | 2_2:+3325854 | None:intergenic |
| AGAGTGATCTCAGGCTACGG+CGG | 0.711287 | 2_2:+3327595 | None:intergenic |
| AATTAGCGACGATGCCATGG+CGG | 0.721913 | 2_2:+3327623 | None:intergenic |
| CAATTTGGGAGAAATCTAGG+AGG | 0.741053 | 2_2:-3326322 | Msa0231130:five_prime_UTR |
| ATCATGCTGAAGAACAGACG+GGG | 0.746376 | 2_2:-3325649 | Msa0231130:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAGAAAGATTAATATTA+TGG | - | chr2_2:3325595-3325614 | Msa0231130:intron | 10.0% |
| !!! | TTATACAATGTATCATTTTT+TGG | + | chr2_2:3326036-3326055 | None:intergenic | 15.0% |
| !! | ATAACAAAAAAAAATTGCAA+AGG | - | chr2_2:3327262-3327281 | Msa0231130:five_prime_UTR | 15.0% |
| !! | TTGAATTGTGTAAATTATAA+AGG | + | chr2_2:3327675-3327694 | None:intergenic | 15.0% |
| !!! | AATGCAAGCTATTTTATTTA+TGG | - | chr2_2:3326297-3326316 | Msa0231130:five_prime_UTR | 20.0% |
| !!! | AATGCAAGCTATTTTATTTA+TGG | - | chr2_2:3326297-3326316 | Msa0231130:five_prime_UTR | 20.0% |
| !!! | TTGTTTTTGTTATTTTATGC+AGG | - | chr2_2:3327368-3327387 | Msa0231130:five_prime_UTR | 20.0% |
| !!! | TGTTTTTGTTATTTTATGCA+GGG | - | chr2_2:3327369-3327388 | Msa0231130:five_prime_UTR | 20.0% |
| !!! | TTCAAAATTTTAACATAAGC+AGG | + | chr2_2:3327582-3327601 | None:intergenic | 20.0% |
| !!! | CTTATGTTAAAATTTTGAAC+TGG | - | chr2_2:3327583-3327602 | Msa0231130:five_prime_UTR | 20.0% |
| !! | TAACAAATAAGTTAGAGATA+GGG | + | chr2_2:3327651-3327670 | None:intergenic | 20.0% |
| !! | ATAACAAATAAGTTAGAGAT+AGG | + | chr2_2:3327652-3327671 | None:intergenic | 20.0% |
| ! | AAAATGTGATGAAATAGAAC+CGG | + | chr2_2:3325279-3325298 | None:intergenic | 25.0% |
| ! | TAAAAACGAATCATTTCTTC+AGG | + | chr2_2:3325503-3325522 | None:intergenic | 25.0% |
| !!! | TGATTTTTTTAGTGTTGAAG+AGG | - | chr2_2:3325642-3325661 | Msa0231130:CDS | 25.0% |
| ! | ACAAATACCTTCAAATTTCT+TGG | + | chr2_2:3325740-3325759 | None:intergenic | 25.0% |
| ! | CAATGAAATCTAATCTAAGT+CGG | + | chr2_2:3325771-3325790 | None:intergenic | 25.0% |
| ! | CTTTCTAATCTATAACAAAC+AGG | + | chr2_2:3325807-3325826 | None:intergenic | 25.0% |
| ! | AATAGGTCAATGAAATCTAA+GGG | + | chr2_2:3326086-3326105 | None:intergenic | 25.0% |
| ! | AAATAGGTCAATGAAATCTA+AGG | + | chr2_2:3326087-3326106 | None:intergenic | 25.0% |
| ! | TCTATTGTCTCAACTAAAAT+AGG | + | chr2_2:3326103-3326122 | None:intergenic | 25.0% |
| !! | GAGACAATAGAAAATGATTT+TGG | - | chr2_2:3326112-3326131 | Msa0231130:five_prime_UTR | 25.0% |
| ! | ATTTATTTGAGAGCAACTTT+CGG | - | chr2_2:3326390-3326409 | Msa0231130:intron | 25.0% |
| ! | AATCAACTTAGAATGCAATT+TGG | + | chr2_2:3327444-3327463 | None:intergenic | 25.0% |
| ! | TTTGTAATGAAAACAGAACA+TGG | + | chr2_2:3327526-3327545 | None:intergenic | 25.0% |
| !! | TGTTTTCATTACAAAGAATG+TGG | - | chr2_2:3327531-3327550 | Msa0231130:five_prime_UTR | 25.0% |
| ATGAAATAGAACCGGTAATT+GGG | + | chr2_2:3325271-3325290 | None:intergenic | 30.0% | |
| TTATGAAGAAACTTGTGCTA+AGG | - | chr2_2:3325520-3325539 | Msa0231130:intron | 30.0% | |
| TATGAAGAAACTTGTGCTAA+GGG | - | chr2_2:3325521-3325540 | Msa0231130:intron | 30.0% | |
| GATTTCATTGACCTAGTTTA+TGG | - | chr2_2:3325781-3325800 | Msa0231130:CDS | 30.0% | |
| ATTCTTAAAGAAGCCACAAA+TGG | - | chr2_2:3326059-3326078 | Msa0231130:five_prime_UTR | 30.0% | |
| TTCTTAAAGAAGCCACAAAT+GGG | - | chr2_2:3326060-3326079 | Msa0231130:five_prime_UTR | 30.0% | |
| GGATTTCAAACCATCATATA+TGG | - | chr2_2:3327092-3327111 | Msa0231130:five_prime_UTR | 30.0% | |
| TTTCAAACCATCATATATGG+AGG | - | chr2_2:3327095-3327114 | Msa0231130:five_prime_UTR | 30.0% | |
| TCAAATTCCTCCATATATGA+TGG | + | chr2_2:3327105-3327124 | None:intergenic | 30.0% | |
| ! | AGAGGTATGATAGAATAGAA+TGG | - | chr2_2:3327212-3327231 | Msa0231130:intron | 30.0% |
| TACACATGATTCGTAAAACA+AGG | + | chr2_2:3327299-3327318 | None:intergenic | 30.0% | |
| !! | GGAAGATTTTGATAGTAGTT+TGG | - | chr2_2:3327390-3327409 | Msa0231130:five_prime_UTR | 30.0% |
| TACAAAGAATGTGGTATGTA+AGG | - | chr2_2:3327540-3327559 | Msa0231130:five_prime_UTR | 30.0% | |
| !!! | TTTTGGTTTTGGTGAGAGTA+GGG | + | chr2_2:3325133-3325152 | None:intergenic | 35.0% |
| GATGAAATAGAACCGGTAAT+TGG | + | chr2_2:3325272-3325291 | None:intergenic | 35.0% | |
| AAACGAATCATTTCTTCAGG+TGG | + | chr2_2:3325500-3325519 | None:intergenic | 35.0% | |
| GAAGAGTCCAAGAAATTTGA+AGG | - | chr2_2:3325730-3325749 | Msa0231130:CDS | 35.0% | |
| TAACAAACAGGCCATAAACT+AGG | + | chr2_2:3325795-3325814 | None:intergenic | 35.0% | |
| AGATTTCTCCCAAATTGTAC+TGG | + | chr2_2:3326469-3326488 | None:intergenic | 35.0% | |
| GTACAATTTGGGAGAAATCT+AGG | - | chr2_2:3326469-3326488 | Msa0231130:intron | 35.0% | |
| ! | TGTTGAGGTGGAAAATTTTG+TGG | + | chr2_2:3326601-3326620 | None:intergenic | 35.0% |
| ATTCCTCCACAACAAAACAT+TGG | - | chr2_2:3326643-3326662 | Msa0231130:intron | 35.0% | |
| TATCCACCCAAACAAAACTA+TGG | - | chr2_2:3326748-3326767 | Msa0231130:intron | 35.0% | |
| !!! | GCTTGACCATAGTTTTGTTT+GGG | + | chr2_2:3326757-3326776 | None:intergenic | 35.0% |
| !!! | AGCTTGACCATAGTTTTGTT+TGG | + | chr2_2:3326758-3326777 | None:intergenic | 35.0% |
| !! | TGCTGTTTGGAATAGTTTTG+TGG | + | chr2_2:3326820-3326839 | None:intergenic | 35.0% |
| TATTCCAAACAGCAAACCTA+TGG | - | chr2_2:3326826-3326845 | Msa0231130:intron | 35.0% | |
| AAAGAAGAAATTATGCGCCA+CGG | - | chr2_2:3326905-3326924 | Msa0231130:intron | 35.0% | |
| TAATCATGCTGAAGAACAGA+CGG | - | chr2_2:3327143-3327162 | Msa0231130:five_prime_UTR | 35.0% | |
| CGAATCATGTGTACTGTAAA+TGG | - | chr2_2:3327306-3327325 | Msa0231130:five_prime_UTR | 35.0% | |
| ! | CAATTTGGTAACTTCAGCAA+GGG | + | chr2_2:3327429-3327448 | None:intergenic | 35.0% |
| CATTGTCACATACAATGTCT+TGG | + | chr2_2:3327621-3327640 | None:intergenic | 35.0% | |
| !!! | GTTTTGGTTTTGGTGAGAGT+AGG | + | chr2_2:3325134-3325153 | None:intergenic | 40.0% |
| !!! | AGAGAGTAGGGTTTTGGTTT+TGG | + | chr2_2:3325144-3325163 | None:intergenic | 40.0% |
| ! | TCGAGGTTGATCTGAATGAA+CGG | + | chr2_2:3325343-3325362 | None:intergenic | 40.0% |
| AGAAGACAAGAGAGAAATCG+AGG | + | chr2_2:3325360-3325379 | None:intergenic | 40.0% | |
| AAGGTTGCGATTACAATCAC+TGG | - | chr2_2:3325438-3325457 | Msa0231130:intron | 40.0% | |
| GTGCTAAGGGTTTCAATATC+AGG | - | chr2_2:3325534-3325553 | Msa0231130:intron | 40.0% | |
| TGCAGTACAACTGTTTACAC+TGG | - | chr2_2:3325685-3325704 | Msa0231130:CDS | 40.0% | |
| ACAGGGTCAATGTAAGAATC+CGG | + | chr2_2:3326184-3326203 | None:intergenic | 40.0% | |
| ACAGGAGATCAGTACATTGA+AGG | - | chr2_2:3326421-3326440 | Msa0231130:intron | 40.0% | |
| TTTCTCCCAAATTGTACTGG+TGG | + | chr2_2:3326466-3326485 | None:intergenic | 40.0% | |
| CAATTTGGGAGAAATCTAGG+AGG | - | chr2_2:3326472-3326491 | Msa0231130:intron | 40.0% | |
| AATCAATTGCCAAACAACCG+AGG | - | chr2_2:3326517-3326536 | Msa0231130:intron | 40.0% | |
| ATCAATTGCCAAACAACCGA+GGG | - | chr2_2:3326518-3326537 | Msa0231130:intron | 40.0% | |
| GGAATCCCTCTTACAACAAT+CGG | - | chr2_2:3326539-3326558 | Msa0231130:intron | 40.0% | |
| GAATCCCTCTTACAACAATC+GGG | - | chr2_2:3326540-3326559 | Msa0231130:intron | 40.0% | |
| GAATCCCGATTGTTGTAAGA+GGG | + | chr2_2:3326547-3326566 | None:intergenic | 40.0% | |
| ! | TGAGGTGGAAAATTTTGTGG+AGG | + | chr2_2:3326598-3326617 | None:intergenic | 40.0% |
| TTTCCACCTCAACAGAACTA+TGG | - | chr2_2:3326607-3326626 | Msa0231130:five_prime_UTR | 40.0% | |
| !! | TGTTGGCCAATGTTTTGTTG+TGG | + | chr2_2:3326652-3326671 | None:intergenic | 40.0% |
| GCCAACAACAACCAAATATC+CGG | - | chr2_2:3326665-3326684 | Msa0231130:intron | 40.0% | |
| ACCGGATATTTGGTTGTTGT+TGG | + | chr2_2:3326669-3326688 | None:intergenic | 40.0% | |
| GCTGAATCAAACCGGATATT+TGG | + | chr2_2:3326679-3326698 | None:intergenic | 40.0% | |
| !!! | TGACCATAGTTTTGTTTGGG+TGG | + | chr2_2:3326754-3326773 | None:intergenic | 40.0% |
| ! | TGCGAGGCTGAATAATTTTG+TGG | + | chr2_2:3326781-3326800 | None:intergenic | 40.0% |
| TTTCTTCTTTCTCCTTCTCC+CGG | + | chr2_2:3326895-3326914 | None:intergenic | 40.0% | |
| TTTCTTCTTTCTCCTTGTCC+TGG | + | chr2_2:3326997-3327016 | None:intergenic | 40.0% | |
| GAATTTGAACAAGCCCAGAA+GGG | - | chr2_2:3327117-3327136 | Msa0231130:five_prime_UTR | 40.0% | |
| AATTTGAACAAGCCCAGAAG+GGG | - | chr2_2:3327118-3327137 | Msa0231130:five_prime_UTR | 40.0% | |
| AGCATGATTATTCCCCTTCT+GGG | + | chr2_2:3327133-3327152 | None:intergenic | 40.0% | |
| AATCATGCTGAAGAACAGAC+GGG | - | chr2_2:3327144-3327163 | Msa0231130:intron | 40.0% | |
| CCTCTCCAGTAAAATTGCTA+GGG | + | chr2_2:3327197-3327216 | None:intergenic | 40.0% | |
| ACCTCTCCAGTAAAATTGCT+AGG | + | chr2_2:3327198-3327217 | None:intergenic | 40.0% | |
| TGATAGTAGTTTGGATCTCC+TGG | - | chr2_2:3327399-3327418 | Msa0231130:five_prime_UTR | 40.0% | |
| GATAGTAGTTTGGATCTCCT+GGG | - | chr2_2:3327400-3327419 | Msa0231130:five_prime_UTR | 40.0% | |
| ! | GCAATTTGGTAACTTCAGCA+AGG | + | chr2_2:3327430-3327449 | None:intergenic | 40.0% |
| GATTCGATTATTGACCCCAT+TGG | + | chr2_2:3327478-3327497 | None:intergenic | 40.0% | |
| !!! | GAGTAGGGTTTTGAGAAGCT+TGG | + | chr2_2:3325118-3325137 | None:intergenic | 45.0% |
| AGCTATTGCGACTTCGCTTT+CGG | - | chr2_2:3325244-3325263 | Msa0231130:three_prime_UTR | 45.0% | |
| ! | CGAGGTTGATCTGAATGAAC+GGG | + | chr2_2:3325342-3325361 | None:intergenic | 45.0% |
| TCTCTCTTGTCTTCTCGCTA+CGG | - | chr2_2:3325365-3325384 | Msa0231130:exon | 45.0% | |
| TCAGAACTCAGTCCTGAGAT+TGG | - | chr2_2:3325395-3325414 | Msa0231130:CDS | 45.0% | |
| TGTAATCGCAACCTTCGAAG+AGG | + | chr2_2:3325433-3325452 | None:intergenic | 45.0% | |
| !! | GGTGGAGGTTTGTTATCTCT+GGG | + | chr2_2:3325482-3325501 | None:intergenic | 45.0% |
| !! | AGGTGGAGGTTTGTTATCTC+TGG | + | chr2_2:3325483-3325502 | None:intergenic | 45.0% |
| CGAATCATTTCTTCAGGTGG+AGG | + | chr2_2:3325497-3325516 | None:intergenic | 45.0% | |
| GAAATCTAAGGGCCCATTTG+TGG | + | chr2_2:3326075-3326094 | None:intergenic | 45.0% | |
| ! | GGATTGTTGTGCTTTTCGAC+AGG | - | chr2_2:3326133-3326152 | Msa0231130:five_prime_UTR | 45.0% |
| GGCAACACAAAGATAACTCC+GGG | + | chr2_2:3326163-3326182 | None:intergenic | 45.0% | |
| CGGCAACACAAAGATAACTC+CGG | + | chr2_2:3326164-3326183 | None:intergenic | 45.0% | |
| CGGAGTTATCTTTGTGTTGC+CGG | - | chr2_2:3326162-3326181 | Msa0231130:five_prime_UTR | 45.0% | |
| CTCCATACTGCTTGTTCACA+GGG | + | chr2_2:3326201-3326220 | None:intergenic | 45.0% | |
| ATTTATCGTCTCTCGCGTTC+TGG | - | chr2_2:3326240-3326259 | Msa0231130:five_prime_UTR | 45.0% | |
| ! | CAACTTTCGGTGTGTGATAC+AGG | - | chr2_2:3326403-3326422 | Msa0231130:intron | 45.0% |
| GACCTCCACCAGTACAATTT+GGG | - | chr2_2:3326458-3326477 | Msa0231130:intron | 45.0% | |
| TAGGAGGAAGACGAGACTAT+CGG | - | chr2_2:3326488-3326507 | Msa0231130:intron | 45.0% | |
| TGTTGTAAGAGGGATTCCCT+CGG | + | chr2_2:3326537-3326556 | None:intergenic | 45.0% | |
| GGAATCCCGATTGTTGTAAG+AGG | + | chr2_2:3326548-3326567 | None:intergenic | 45.0% | |
| CCATAGTTTCTACCATCCCT+TGG | + | chr2_2:3326574-3326593 | None:intergenic | 45.0% | |
| CCAAGGGATGGTAGAAACTA+TGG | - | chr2_2:3326571-3326590 | Msa0231130:intron | 45.0% | |
| !! | TGGCCAATGTTTTGTTGTGG+AGG | + | chr2_2:3326649-3326668 | None:intergenic | 45.0% |
| ! | TGCTTGATCATAGCTCTGCT+GGG | + | chr2_2:3326719-3326738 | None:intergenic | 45.0% |
| AGCTATGATCAAGCACCACA+AGG | - | chr2_2:3326724-3326743 | Msa0231130:intron | 45.0% | |
| GCTATGATCAAGCACCACAA+GGG | - | chr2_2:3326725-3326744 | Msa0231130:intron | 45.0% | |
| !! | AGGACCATAGGTTTGCTGTT+TGG | + | chr2_2:3326833-3326852 | None:intergenic | 45.0% |
| CTTCTTCTGTCTACTTCTCC+CGG | + | chr2_2:3326946-3326965 | None:intergenic | 45.0% | |
| ! | TATGCGCCGCAGCAAAATTT+TGG | - | chr2_2:3326967-3326986 | Msa0231130:intron | 45.0% |
| AAATCCCATCCACCTTCACT+AGG | + | chr2_2:3327078-3327097 | None:intergenic | 45.0% | |
| GGAATTTGAACAAGCCCAGA+AGG | - | chr2_2:3327116-3327135 | Msa0231130:five_prime_UTR | 45.0% | |
| CAGCATGATTATTCCCCTTC+TGG | + | chr2_2:3327134-3327153 | None:intergenic | 45.0% | |
| ATCATGCTGAAGAACAGACG+GGG | - | chr2_2:3327145-3327164 | Msa0231130:intron | 45.0% | |
| AGGAGGCGGAAATCTTTGTT+GGG | + | chr2_2:3327172-3327191 | None:intergenic | 45.0% | |
| ! | CCCTAGCAATTTTACTGGAG+AGG | - | chr2_2:3327194-3327213 | Msa0231130:intron | 45.0% |
| TGATTGCATGTCCTTGCCAA+TGG | - | chr2_2:3327459-3327478 | Msa0231130:five_prime_UTR | 45.0% | |
| GATTGCATGTCCTTGCCAAT+GGG | - | chr2_2:3327460-3327479 | Msa0231130:five_prime_UTR | 45.0% | |
| ATTGCATGTCCTTGCCAATG+GGG | - | chr2_2:3327461-3327480 | Msa0231130:five_prime_UTR | 45.0% | |
| GATTATTGACCCCATTGGCA+AGG | + | chr2_2:3327473-3327492 | None:intergenic | 45.0% | |
| !!! | ATAAATTAAAAAAGTAATTT+TGG | - | chr2_2:3325919-3325938 | Msa0231130:five_prime_UTR | 5.0% |
| ! | GGTTGGAGAGAGTAGGGTTT+TGG | + | chr2_2:3325150-3325169 | None:intergenic | 50.0% |
| AATTAGCGACGATGCCATGG+CGG | + | chr2_2:3325174-3325193 | None:intergenic | 50.0% | |
| GAGAATTAGCGACGATGCCA+TGG | + | chr2_2:3325177-3325196 | None:intergenic | 50.0% | |
| CAATAGCTGAGAAGGAGTGG+TGG | + | chr2_2:3325232-3325251 | None:intergenic | 50.0% | |
| TCGCAATAGCTGAGAAGGAG+TGG | + | chr2_2:3325235-3325254 | None:intergenic | 50.0% | |
| CGAAGTCGCAATAGCTGAGA+AGG | + | chr2_2:3325240-3325259 | None:intergenic | 50.0% | |
| TCGCTTTCGGTCCCAATTAC+CGG | - | chr2_2:3325257-3325276 | Msa0231130:three_prime_UTR | 50.0% | |
| AAATCCCCAAACGTCGTCGA+CGG | - | chr2_2:3325308-3325327 | Msa0231130:three_prime_UTR | 50.0% | |
| ! | ATGGTGTCAGGACCAATCTC+AGG | + | chr2_2:3325410-3325429 | None:intergenic | 50.0% |
| ATCGCAACCTTCGAAGAGGA+TGG | + | chr2_2:3325429-3325448 | None:intergenic | 50.0% | |
| ! | TGCTTTTCGACAGGTTTGCC+CGG | - | chr2_2:3326142-3326161 | Msa0231130:five_prime_UTR | 50.0% |
| GACCCTGTGAACAAGCAGTA+TGG | - | chr2_2:3326196-3326215 | Msa0231130:five_prime_UTR | 50.0% | |
| CCTCCATACTGCTTGTTCAC+AGG | + | chr2_2:3326202-3326221 | None:intergenic | 50.0% | |
| CCTGTGAACAAGCAGTATGG+AGG | - | chr2_2:3326199-3326218 | Msa0231130:five_prime_UTR | 50.0% | |
| ! | ATTGTACTGGTGGAGGTCGA+GGG | + | chr2_2:3326456-3326475 | None:intergenic | 50.0% |
| ! | AATTGTACTGGTGGAGGTCG+AGG | + | chr2_2:3326457-3326476 | None:intergenic | 50.0% |
| CGACCTCCACCAGTACAATT+TGG | - | chr2_2:3326457-3326476 | Msa0231130:intron | 50.0% | |
| ! | CTCCCAAATTGTACTGGTGG+AGG | + | chr2_2:3326463-3326482 | None:intergenic | 50.0% |
| ACAATCGGGATTCCATGCCA+AGG | - | chr2_2:3326554-3326573 | Msa0231130:intron | 50.0% | |
| CAATCGGGATTCCATGCCAA+GGG | - | chr2_2:3326555-3326574 | Msa0231130:intron | 50.0% | |
| GTTTCTACCATCCCTTGGCA+TGG | + | chr2_2:3326569-3326588 | None:intergenic | 50.0% | |
| ! | TGGCCATAGTTCTGTTGAGG+TGG | + | chr2_2:3326613-3326632 | None:intergenic | 50.0% |
| ! | GCTTGGCCATAGTTCTGTTG+AGG | + | chr2_2:3326616-3326635 | None:intergenic | 50.0% |
| GTGGAGGAATGTGTGATGCT+TGG | + | chr2_2:3326633-3326652 | None:intergenic | 50.0% | |
| GCTGCGATGCTGAATCAAAC+CGG | + | chr2_2:3326687-3326706 | None:intergenic | 50.0% | |
| ! | GCTTGATCATAGCTCTGCTG+GGG | + | chr2_2:3326718-3326737 | None:intergenic | 50.0% |
| ! | GTGCTTGATCATAGCTCTGC+TGG | + | chr2_2:3326720-3326739 | None:intergenic | 50.0% |
| TGTTTGGGTGGATACCCTTG+TGG | + | chr2_2:3326742-3326761 | None:intergenic | 50.0% | |
| CGCTTGATTGAAGTTCTGCG+AGG | + | chr2_2:3326797-3326816 | None:intergenic | 50.0% | |
| TATCCACCACAGCAGAGCTT+TGG | - | chr2_2:3326865-3326884 | Msa0231130:intron | 50.0% | |
| TTCTTTCTCCTTGTCCTGGC+GGG | + | chr2_2:3326993-3327012 | None:intergenic | 50.0% | |
| CTTCTTTCTCCTTGTCCTGG+CGG | + | chr2_2:3326994-3327013 | None:intergenic | 50.0% | |
| TATGCGCCACAGCAGAACTT+TGG | - | chr2_2:3327018-3327037 | Msa0231130:intron | 50.0% | |
| ACAGCAGAACTTTGGACCAC+CGG | - | chr2_2:3327026-3327045 | Msa0231130:intron | 50.0% | |
| TTTCCTCTTTCTCCCTGTCC+CGG | + | chr2_2:3327048-3327067 | None:intergenic | 50.0% | |
| GGAAACTCTGTGCCTAGTGA+AGG | - | chr2_2:3327063-3327082 | Msa0231130:intron | 50.0% | |
| AACTCTGTGCCTAGTGAAGG+TGG | - | chr2_2:3327066-3327085 | Msa0231130:five_prime_UTR | 50.0% | |
| TGTGCCTAGTGAAGGTGGAT+GGG | - | chr2_2:3327071-3327090 | Msa0231130:five_prime_UTR | 50.0% | |
| CAGGAGGCGGAAATCTTTGT+TGG | + | chr2_2:3327173-3327192 | None:intergenic | 50.0% | |
| CAACAAAGATTTCCGCCTCC+TGG | - | chr2_2:3327171-3327190 | Msa0231130:intron | 50.0% | |
| GTAAAATTGCTAGGGCCAGG+AGG | + | chr2_2:3327189-3327208 | None:intergenic | 50.0% | |
| CCAGTAAAATTGCTAGGGCC+AGG | + | chr2_2:3327192-3327211 | None:intergenic | 50.0% | |
| ! | CCTGGCCCTAGCAATTTTAC+TGG | - | chr2_2:3327189-3327208 | Msa0231130:intron | 50.0% |
| AGTAGTTTGGATCTCCTGGG+AGG | - | chr2_2:3327403-3327422 | Msa0231130:five_prime_UTR | 50.0% | |
| TAACATAAGCAGGCAGCAGC+TGG | + | chr2_2:3327572-3327591 | None:intergenic | 50.0% | |
| AGAGTGATCTCAGGCTACGG+CGG | + | chr2_2:3325202-3325221 | None:intergenic | 55.0% | |
| CGGAGAGTGATCTCAGGCTA+CGG | + | chr2_2:3325205-3325224 | None:intergenic | 55.0% | |
| CGTAGCCTGAGATCACTCTC+CGG | - | chr2_2:3325203-3325222 | Msa0231130:three_prime_UTR | 55.0% | |
| TAGCTGAGAAGGAGTGGTGG+AGG | + | chr2_2:3325229-3325248 | None:intergenic | 55.0% | |
| CCTTCGAAGAGGATGGTGTC+AGG | + | chr2_2:3325422-3325441 | None:intergenic | 55.0% | |
| CCTGACACCATCCTCTTCGA+AGG | - | chr2_2:3325419-3325438 | Msa0231130:intron | 55.0% | |
| GAGGGATTCCCTCGGTTGTT+TGG | + | chr2_2:3326529-3326548 | None:intergenic | 55.0% | |
| ! | TGATCATAGCTCTGCTGGGG+TGG | + | chr2_2:3326715-3326734 | None:intergenic | 55.0% |
| !! | CTCTGCTGTGGTGGATACTG+TGG | + | chr2_2:3326862-3326881 | None:intergenic | 55.0% |
| !! | ACAGCAGAGCTTTGGACCAC+CGG | - | chr2_2:3326873-3326892 | Msa0231130:intron | 55.0% |
| CTTCTTTCTCCTTCTCCCGG+TGG | + | chr2_2:3326892-3326911 | None:intergenic | 55.0% | |
| TATGCGCCACGGCAGAACTT+TGG | - | chr2_2:3326916-3326935 | Msa0231130:intron | 55.0% | |
| ATGCGCCACGGCAGAACTTT+GGG | - | chr2_2:3326917-3326936 | Msa0231130:intron | 55.0% | |
| CTTCTGTCTACTTCTCCCGG+TGG | + | chr2_2:3326943-3326962 | None:intergenic | 55.0% | |
| ! | GGCGGGCCAAAATTTTGCTG+CGG | + | chr2_2:3326976-3326995 | None:intergenic | 55.0% |
| !! | CAGCAAAATTTTGGCCCGCC+AGG | - | chr2_2:3326976-3326995 | Msa0231130:intron | 55.0% |
| !! | AATTTTGGCCCGCCAGGACA+AGG | - | chr2_2:3326982-3327001 | Msa0231130:intron | 55.0% |
| GGTGGTCCAAAGTTCTGCTG+TGG | + | chr2_2:3327027-3327046 | None:intergenic | 55.0% | |
| CAGCAGAACTTTGGACCACC+GGG | - | chr2_2:3327027-3327046 | Msa0231130:intron | 55.0% | |
| AACTTTGGACCACCGGGACA+GGG | - | chr2_2:3327033-3327052 | Msa0231130:intron | 55.0% | |
| CTGTGCCTAGTGAAGGTGGA+TGG | - | chr2_2:3327070-3327089 | Msa0231130:five_prime_UTR | 55.0% | |
| AAATTGCTAGGGCCAGGAGG+CGG | + | chr2_2:3327186-3327205 | None:intergenic | 55.0% | |
| GGCGGTGGTTGGAGAGAGTA+GGG | + | chr2_2:3325156-3325175 | None:intergenic | 60.0% | |
| TGGCGGTGGTTGGAGAGAGT+AGG | + | chr2_2:3325157-3325176 | None:intergenic | 60.0% | |
| ACTCTCTCCAACCACCGCCA+TGG | - | chr2_2:3325157-3325176 | Msa0231130:three_prime_UTR | 60.0% | |
| ! | TGAGAAGGAGTGGTGGAGGC+CGG | + | chr2_2:3325225-3325244 | None:intergenic | 60.0% |
| AACGCCGTCGACGACGTTTG+GGG | + | chr2_2:3325315-3325334 | None:intergenic | 60.0% | |
| GAACGCCGTCGACGACGTTT+GGG | + | chr2_2:3325316-3325335 | None:intergenic | 60.0% | |
| TGAACGCCGTCGACGACGTT+TGG | + | chr2_2:3325317-3325336 | None:intergenic | 60.0% | |
| CGGGATTCCATGCCAAGGGA+TGG | - | chr2_2:3326559-3326578 | Msa0231130:intron | 60.0% | |
| CTGTGGCGAAGCAGGACCAT+AGG | + | chr2_2:3326845-3326864 | None:intergenic | 60.0% | |
| GGTGGATACTGTGGCGAAGC+AGG | + | chr2_2:3326853-3326872 | None:intergenic | 60.0% | |
| GGTCCAAAGCTCTGCTGTGG+TGG | + | chr2_2:3326871-3326890 | None:intergenic | 60.0% | |
| GGTGGTCCAAAGCTCTGCTG+TGG | + | chr2_2:3326874-3326893 | None:intergenic | 60.0% | |
| !! | CAGCAGAGCTTTGGACCACC+GGG | - | chr2_2:3326874-3326893 | Msa0231130:intron | 60.0% |
| !! | AGCTTTGGACCACCGGGAGA+AGG | - | chr2_2:3326880-3326899 | Msa0231130:intron | 60.0% |
| ACGGCAGAACTTTGGGCCAC+CGG | - | chr2_2:3326924-3326943 | Msa0231130:intron | 60.0% | |
| GAACTTTGGACCACCGGGAC+AGG | - | chr2_2:3327032-3327051 | Msa0231130:intron | 60.0% | |
| AACTTCAGCAAGGGCCTCCC+AGG | + | chr2_2:3327420-3327439 | None:intergenic | 60.0% | |
| GACGATGCCATGGCGGTGGT+TGG | + | chr2_2:3325167-3325186 | None:intergenic | 65.0% | |
| TAGCGACGATGCCATGGCGG+TGG | + | chr2_2:3325171-3325190 | None:intergenic | 65.0% | |
| GTGATCTCAGGCTACGGCGG+AGG | + | chr2_2:3325199-3325218 | None:intergenic | 65.0% | |
| GGAGGCCGGAGAGTGATCTC+AGG | + | chr2_2:3325211-3325230 | None:intergenic | 65.0% | |
| GGTGGCCCAAAGTTCTGCCG+TGG | + | chr2_2:3326925-3326944 | None:intergenic | 65.0% | |
| CGGCAGAACTTTGGGCCACC+GGG | - | chr2_2:3326925-3326944 | Msa0231130:intron | 65.0% | |
| CCTCTTTCTCCCTGTCCCGG+TGG | + | chr2_2:3327045-3327064 | None:intergenic | 65.0% | |
| CCACCGGGACAGGGAGAAAG+AGG | - | chr2_2:3327042-3327061 | Msa0231130:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 3325087 | 3327729 | 3325087 | ID=Msa0231130;Name=Msa0231130 |
| chr2_2 | mRNA | 3325087 | 3327729 | 3325087 | ID=Msa0231130-mRNA-1;Parent=Msa0231130;Name=Msa0231130-mRNA-1;_AED=0.02;_eAED=0.02;_QI=1176|1|1|1|0.75|0.6|5|294|97 |
| chr2_2 | exon | 3325087 | 3325426 | 3325087 | ID=Msa0231130-mRNA-1:exon:1289;Parent=Msa0231130-mRNA-1 |
| chr2_2 | exon | 3325601 | 3326391 | 3325601 | ID=Msa0231130-mRNA-1:exon:1288;Parent=Msa0231130-mRNA-1 |
| chr2_2 | exon | 3326596 | 3326661 | 3326596 | ID=Msa0231130-mRNA-1:exon:1287;Parent=Msa0231130-mRNA-1 |
| chr2_2 | exon | 3327065 | 3327162 | 3327065 | ID=Msa0231130-mRNA-1:exon:1286;Parent=Msa0231130-mRNA-1 |
| chr2_2 | exon | 3327261 | 3327729 | 3327261 | ID=Msa0231130-mRNA-1:exon:1285;Parent=Msa0231130-mRNA-1 |
| chr2_2 | five_prime_UTR | 3327261 | 3327729 | 3327261 | ID=Msa0231130-mRNA-1:five_prime_utr;Parent=Msa0231130-mRNA-1 |
| chr2_2 | five_prime_UTR | 3327065 | 3327162 | 3327065 | ID=Msa0231130-mRNA-1:five_prime_utr;Parent=Msa0231130-mRNA-1 |
| chr2_2 | five_prime_UTR | 3326596 | 3326661 | 3326596 | ID=Msa0231130-mRNA-1:five_prime_utr;Parent=Msa0231130-mRNA-1 |
| chr2_2 | five_prime_UTR | 3325849 | 3326391 | 3325849 | ID=Msa0231130-mRNA-1:five_prime_utr;Parent=Msa0231130-mRNA-1 |
| chr2_2 | CDS | 3325601 | 3325848 | 3325601 | ID=Msa0231130-mRNA-1:cds;Parent=Msa0231130-mRNA-1 |
| chr2_2 | CDS | 3325381 | 3325426 | 3325381 | ID=Msa0231130-mRNA-1:cds;Parent=Msa0231130-mRNA-1 |
| chr2_2 | three_prime_UTR | 3325087 | 3325380 | 3325087 | ID=Msa0231130-mRNA-1:three_prime_utr;Parent=Msa0231130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
