AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0190520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0190520 MtrunA17_Chr2g0280151 99.310 290 2 0 1 290 1 290 0.0 592
Msa0190520 MtrunA17_Chr8g0372981 31.532 222 115 8 33 249 6 195 1.33e-17 79.7
Msa0190520 MtrunA17_Chr8g0345781 29.412 204 113 7 82 282 40 215 1.40e-16 77.0
Msa0190520 MtrunA17_Chr1g0182331 34.356 163 80 6 82 241 39 177 2.21e-15 73.6
Msa0190520 MtrunA17_Chr5g0404551 32.919 161 85 5 82 241 36 174 3.32e-15 72.8
Msa0190520 MtrunA17_Chr7g0276441 31.214 173 95 5 71 241 4 154 1.49e-13 67.8
Msa0190520 MtrunA17_Chr1g0200691 33.108 148 77 4 94 241 134 259 3.32e-13 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0190520 AT5G09650.1 76.259 278 66 0 12 289 22 299 9.99e-157 439
Msa0190520 AT4G01480.1 32.941 170 87 6 75 241 32 177 4.20e-17 78.6
Msa0190520 AT4G01480.2 32.941 170 87 6 75 241 32 177 4.20e-17 78.6
Msa0190520 AT1G01050.1 34.969 163 79 6 82 241 35 173 7.60e-17 77.8
Msa0190520 AT1G01050.2 34.969 163 79 6 82 241 35 173 7.60e-17 77.8
Msa0190520 AT3G53620.1 32.039 206 99 9 41 241 8 177 3.55e-16 76.3
Msa0190520 AT2G46860.1 33.929 168 84 6 82 246 39 182 4.78e-15 72.8
Msa0190520 AT2G18230.1 32.967 182 92 8 65 241 23 179 1.93e-14 71.2

Find 96 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTGGTAAGAAACCATTTC+TGG 0.173743 2_1:-6014961 Msa0190520:CDS
CAAATGCTCCTTCAACTTCA+TGG 0.239095 2_1:+6013385 None:intergenic
ATCTTTGCACTGGATTCTTT+TGG 0.250632 2_1:+6013872 None:intergenic
CTTTGACATCAATTCCCTTT+TGG 0.261057 2_1:-6012360 Msa0190520:three_prime_UTR
TCATGACAAATCTGGTAAAA+AGG 0.262767 2_1:-6014799 Msa0190520:intron
AGGGAACCCTTATTGCAATT+AGG 0.268966 2_1:-6012887 Msa0190520:CDS
ACCAGTCCCTAATTGCAATA+AGG 0.278486 2_1:+6012880 None:intergenic
AATTCAACCTACACTCTTCT+TGG 0.284493 2_1:-6014978 Msa0190520:CDS
GGGAACCCTTATTGCAATTA+GGG 0.289010 2_1:-6012886 Msa0190520:CDS
CCAGTCCCTAATTGCAATAA+GGG 0.339762 2_1:+6012881 None:intergenic
CATGAAGTTGAAGGAGCATT+TGG 0.354647 2_1:-6013384 Msa0190520:CDS
TGAATTGCTGGCTATGGTTA+TGG 0.358862 2_1:+6014995 None:intergenic
TATAATATACATTGGAACTA+TGG 0.359484 2_1:-6013447 Msa0190520:CDS
TCGTTCACAAGTGAAGCTTT+TGG 0.374309 2_1:+6013092 None:intergenic
GTGTGACTCTTGTTTCTGAT+AGG 0.376333 2_1:+6015105 None:intergenic
GGGAAGCCTGCTAATAGATT+TGG 0.387751 2_1:-6012834 Msa0190520:CDS
TGGCAACCAGGCAGTAAATA+AGG 0.389560 2_1:-6012808 Msa0190520:intron
GTATTCTTTCATGACAAATC+TGG 0.394289 2_1:-6014807 Msa0190520:CDS
TTGACGAAGGAGAACTTGAT+TGG 0.399762 2_1:-6013142 Msa0190520:CDS
GCCTTTCACTCCCATTAAAC+AGG 0.401068 2_1:-6013831 Msa0190520:CDS
TGAACAGGATTACGCGCTTA+AGG 0.404300 2_1:-6012553 Msa0190520:intron
TTAACTAGTGCCTGACCAAA+AGG 0.418456 2_1:+6012345 None:intergenic
AAGAGTGTAGGTTGAATTGC+TGG 0.424489 2_1:+6014983 None:intergenic
TGGATGCTGATGATGATGTT+TGG 0.428026 2_1:+6015036 None:intergenic
GGCTCTGGTGGTGGCCGCCA+TGG 0.430082 2_1:+6015016 None:intergenic
CTTGGTAAGAAACCATTTCT+GGG 0.434971 2_1:-6014960 Msa0190520:CDS
GAAAGAATACTCTATAATCA+AGG 0.446305 2_1:+6014820 None:intergenic
AAAAGAATCCAGTGCAAAGA+TGG 0.449123 2_1:-6013870 Msa0190520:CDS
TACCAGGTCTTACACTTGTA+AGG 0.449419 2_1:-6014892 Msa0190520:CDS
ACACCATCACCTAGCTTCAA+TGG 0.450128 2_1:+6013917 None:intergenic
GCTGGCTATGGTTATGGCTC+TGG 0.453287 2_1:+6015001 None:intergenic
CTTGCAAACCATGAAGTTGA+AGG 0.459429 2_1:-6013393 Msa0190520:CDS
ACTCTATAATCAAGGGTTTG+TGG 0.461252 2_1:+6014828 None:intergenic
GGCGATAGGCAGGGGAAGAT+AGG 0.464216 2_1:-6013206 Msa0190520:CDS
CCTGCTAATAGATTTGGTCT+TGG 0.465825 2_1:-6012828 Msa0190520:CDS
ACTTCATGGTTTGCAAGAGA+TGG 0.466731 2_1:+6013399 None:intergenic
GGTTGAGATCGGCGATAGGC+AGG 0.466745 2_1:-6013216 Msa0190520:CDS
GGCAACCTCCATCTTTGCAC+TGG 0.466901 2_1:+6013862 None:intergenic
ACCTCAAAAGACAGTGGAAG+TGG 0.468008 2_1:+6015064 None:intergenic
CTATTAGCAGGCTTCCCATC+AGG 0.470122 2_1:+6012840 None:intergenic
CCCTTATTGCAATTAGGGAC+TGG 0.472680 2_1:-6012881 Msa0190520:CDS
CCAAGACCAAATCTATTAGC+AGG 0.481701 2_1:+6012828 None:intergenic
AGAGCACGACCACCCAGAAA+TGG 0.490032 2_1:+6014948 None:intergenic
AAAGTACCTTATTTACTGCC+TGG 0.490502 2_1:+6012802 None:intergenic
GCATTTGGAGATAATGATCC+AGG 0.493736 2_1:-6013369 Msa0190520:intron
AAGTTCTCCTTCGTCAATCA+TGG 0.498398 2_1:+6013148 None:intergenic
CTTCCCATGTTTGTGGAAGT+AGG 0.504751 2_1:+6013424 None:intergenic
TATGGTTATGGCTCTGGTGG+TGG 0.505998 2_1:+6015007 None:intergenic
TTTCTAGCTATAATATACAT+TGG 0.511801 2_1:-6013455 Msa0190520:intron
ATGGCCTACTTCCACAAACA+TGG 0.512267 2_1:-6013428 Msa0190520:CDS
TCCTCCTTGACAGAAACCTC+AGG 0.513243 2_1:+6014858 None:intergenic
TAGATTTGGTCTTGGCAACC+AGG 0.513690 2_1:-6012820 Msa0190520:CDS
GATGGATCTTCCCATGTTTG+TGG 0.513981 2_1:+6013417 None:intergenic
GGCTATGGTTATGGCTCTGG+TGG 0.518181 2_1:+6015004 None:intergenic
AATCATGGCTAATGCAGCTA+AGG 0.518417 2_1:+6013163 None:intergenic
AACATCATCATCAGCATCCA+TGG 0.522592 2_1:-6015033 Msa0190520:exon
TCCTGTTTAATGGGAGTGAA+AGG 0.527368 2_1:+6013830 None:intergenic
CTTCAATGGAATATCATGCC+AGG 0.527404 2_1:+6013931 None:intergenic
TGTCACTTGTGTAAATGTAT+TGG 0.532113 2_1:-6012467 Msa0190520:exon
GTAGGTTGAATTGCTGGCTA+TGG 0.532311 2_1:+6014989 None:intergenic
TTGAGATCGGCGATAGGCAG+GGG 0.555735 2_1:-6013214 Msa0190520:CDS
TTACCCTGAGGTTTCTGTCA+AGG 0.559627 2_1:-6014862 Msa0190520:CDS
CATGATATTCCATTGAAGCT+AGG 0.560093 2_1:-6013926 Msa0190520:CDS
AAAATTTGCAGGTTTCTCCC+TGG 0.563605 2_1:-6013949 Msa0190520:intron
ACAAGTGACAGCTCTCCTGC+AGG 0.563913 2_1:+6012480 None:intergenic
TCTTCGTCTCAACAATCTCA+AGG 0.563936 2_1:-6014928 Msa0190520:CDS
TAACTAGTGCCTGACCAAAA+GGG 0.564623 2_1:+6012346 None:intergenic
GAGGTTTCTGTCAAGGAGGA+AGG 0.568482 2_1:-6014855 Msa0190520:CDS
TTTCTTACCAAGAAGAGTGT+AGG 0.568894 2_1:+6014971 None:intergenic
GTGAAGAGATCAATTCCTGC+AGG 0.569789 2_1:-6012495 Msa0190520:CDS
AGAGACTATAAGATACCTGA+TGG 0.572431 2_1:-6012855 Msa0190520:CDS
AAAGAATACTCTATAATCAA+GGG 0.573187 2_1:+6014821 None:intergenic
AGGTTTCTTCTAGAACTACC+AGG 0.585474 2_1:-6014908 Msa0190520:CDS
TGTAGAACAGAAAAGCAAGA+TGG 0.587036 2_1:+6012311 None:intergenic
GTAGTTGATGTGGTTGAGAT+CGG 0.591253 2_1:-6013227 Msa0190520:intron
TTCAATGGAATATCATGCCA+GGG 0.592635 2_1:+6013932 None:intergenic
GTTGAGATCGGCGATAGGCA+GGG 0.598465 2_1:-6013215 Msa0190520:CDS
TCACAGAGACCAACGAGTCG+TGG 0.599954 2_1:-6012527 Msa0190520:CDS
TAATGTGTATGTAGTTGATG+TGG 0.600621 2_1:-6013237 Msa0190520:intron
GTTGAAACCTCAAAAGACAG+TGG 0.616273 2_1:+6015058 None:intergenic
ATCATGGCTAATGCAGCTAA+GGG 0.626205 2_1:+6013164 None:intergenic
ATGTGGTTGAGATCGGCGAT+AGG 0.626574 2_1:-6013220 Msa0190520:CDS
AAGTTTACTCCACGACTCGT+TGG 0.631147 2_1:+6012518 None:intergenic
AGAATCCAGTGCAAAGATGG+AGG 0.633108 2_1:-6013867 Msa0190520:CDS
CCCTGAGGTTTCTGTCAAGG+AGG 0.635768 2_1:-6014859 Msa0190520:CDS
TGGCCTACTTCCACAAACAT+GGG 0.639890 2_1:-6013427 Msa0190520:CDS
CCTCCTTGACAGAAACCTCA+GGG 0.648404 2_1:+6014859 None:intergenic
GGGAGTGAAAGGCTCGTCAG+TGG 0.656681 2_1:+6013841 None:intergenic
GAGACTATAAGATACCTGAT+GGG 0.657767 2_1:-6012854 Msa0190520:CDS
GCATTAGCCATGATTGACGA+AGG 0.659093 2_1:-6013155 Msa0190520:CDS
TAAGGCTATCTATTACCCTG+AGG 0.661825 2_1:-6014874 Msa0190520:CDS
AGCCTTACAAGTGTAAGACC+TGG 0.666496 2_1:+6014890 None:intergenic
ATTCCATTGAAGCTAGGTGA+TGG 0.692555 2_1:-6013920 Msa0190520:CDS
TAGGCAGGGGAAGATAGGAG+AGG 0.698710 2_1:-6013201 Msa0190520:CDS
GGTAAGAAACCATTTCTGGG+TGG 0.717977 2_1:-6014957 Msa0190520:CDS
ATCATCATCAGCATCCATGG+CGG 0.719570 2_1:-6015030 Msa0190520:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCCATTTCATAATAAAAAA+TGG - chr2_1:6012322-6012341 Msa0190520:three_prime_UTR 15.0%
!!! TTTTTTTCATTTGATCAATT+TGG - chr2_1:6012712-6012731 Msa0190520:intron 15.0%
!!! TTTTTTCATTTGATCAATTT+GGG - chr2_1:6012713-6012732 Msa0190520:intron 15.0%
!!! GAATTAAGAAATTATGATTT+TGG - chr2_1:6012786-6012805 Msa0190520:intron 15.0%
!! TAAGTAAATAAATTGTTGAA+TGG - chr2_1:6012907-6012926 Msa0190520:intron 15.0%
!! ATATTCTATACAGAATTATA+AGG + chr2_1:6013385-6013404 None:intergenic 15.0%
!!! TTAATTTTTCCTTTTCTTTA+TGG + chr2_1:6013421-6013440 None:intergenic 15.0%
!!! ATATAATTTGTAAAATTTGC+AGG - chr2_1:6013523-6013542 Msa0190520:intron 15.0%
!! GAAAAAATAATACAACAAAA+AGG + chr2_1:6013739-6013758 None:intergenic 15.0%
!!! TTGTTGTATTATTTTTTCTT+TGG - chr2_1:6013741-6013760 Msa0190520:intron 15.0%
!!! TGCCATTTTTTATTATGAAA+TGG + chr2_1:6012327-6012346 None:intergenic 20.0%
!! AAAGAATACTCTATAATCAA+GGG + chr2_1:6012665-6012684 None:intergenic 20.0%
!!! TTTTTTGTAATTGTGATGTT+GGG - chr2_1:6012754-6012773 Msa0190520:intron 20.0%
!! AAATATGAAAATCTAACACT+AGG + chr2_1:6013336-6013355 None:intergenic 20.0%
!!! GTGTTAGATTTTCATATTTT+TGG - chr2_1:6013337-6013356 Msa0190520:intron 20.0%
!!! TTTTTTGTATCCTGTTTAAT+GGG + chr2_1:6013665-6013684 None:intergenic 20.0%
!! ATTAAACAGGATACAAAAAA+GGG - chr2_1:6013665-6013684 Msa0190520:intron 20.0%
!! TAAACGATATATTTCACAAT+AGG + chr2_1:6014003-6014022 None:intergenic 20.0%
!!! TTTCTAGCTATAATATACAT+TGG - chr2_1:6014028-6014047 Msa0190520:intron 20.0%
!! TATAATATACATTGGAACTA+TGG - chr2_1:6014036-6014055 Msa0190520:intron 20.0%
!! AACAGAATAAAGAATTCATT+AGG + chr2_1:6014733-6014752 None:intergenic 20.0%
!! AATTAAAAAAATGCAAGCAT+TGG + chr2_1:6015062-6015081 None:intergenic 20.0%
! GAAAGAATACTCTATAATCA+AGG + chr2_1:6012666-6012685 None:intergenic 25.0%
!!! AATTTGGGTATTGAAGTTTT+GGG - chr2_1:6012728-6012747 Msa0190520:intron 25.0%
!!! GTTTTTTGTAATTGTGATGT+TGG - chr2_1:6012753-6012772 Msa0190520:intron 25.0%
! CTATAGCAAATGATACAAAA+AGG + chr2_1:6012828-6012847 None:intergenic 25.0%
! TTTGTTTGATGGAATGATAA+TGG - chr2_1:6012878-6012897 Msa0190520:CDS 25.0%
! GTAAATAAATTGTTGAATGG+TGG - chr2_1:6012910-6012929 Msa0190520:intron 25.0%
! AATTGATTGTTCAGTTGTTA+GGG - chr2_1:6012978-6012997 Msa0190520:intron 25.0%
!!! TTTTCATATTTTTGGTTGCT+AGG - chr2_1:6013345-6013364 Msa0190520:intron 25.0%
! TTGACATTTCCATAAAGAAA+AGG - chr2_1:6013409-6013428 Msa0190520:CDS 25.0%
!!! CTTTTTTGTATCCTGTTTAA+TGG + chr2_1:6013666-6013685 None:intergenic 25.0%
! CATTAAACAGGATACAAAAA+AGG - chr2_1:6013664-6013683 Msa0190520:intron 25.0%
! ATTTCACAATAGGTTACATA+TGG + chr2_1:6013993-6014012 None:intergenic 25.0%
! AAGATATTGAGATGACATAA+TGG + chr2_1:6014183-6014202 None:intergenic 25.0%
!! TACACATTAACAGGAATTTT+AGG + chr2_1:6014235-6014254 None:intergenic 25.0%
! TAACGAAAGTTTCATTAAGA+TGG - chr2_1:6014491-6014510 Msa0190520:intron 25.0%
! ATTATCTACTGCAATGTTAA+TGG - chr2_1:6014859-6014878 Msa0190520:CDS 25.0%
!!! CAAACTTATTTTTTGTGAAC+AGG - chr2_1:6014915-6014934 Msa0190520:CDS 25.0%
GTATTCTTTCATGACAAATC+TGG - chr2_1:6012676-6012695 Msa0190520:intron 30.0%
TCATGACAAATCTGGTAAAA+AGG - chr2_1:6012684-6012703 Msa0190520:intron 30.0%
!!! CAATTTGGGTATTGAAGTTT+TGG - chr2_1:6012727-6012746 Msa0190520:intron 30.0%
!!! ATTTGGGTATTGAAGTTTTG+GGG - chr2_1:6012729-6012748 Msa0190520:intron 30.0%
! AGATGATGATGTCATTGATT+TGG - chr2_1:6012850-6012869 Msa0190520:CDS 30.0%
!! GATGATGATGTCATTGATTT+GGG - chr2_1:6012851-6012870 Msa0190520:CDS 30.0%
!! ATGATGATGTCATTGATTTG+GGG - chr2_1:6012852-6012871 Msa0190520:CDS 30.0%
!! ATTTGGGGATTTTTGTTTGA+TGG - chr2_1:6012867-6012886 Msa0190520:CDS 30.0%
CAATTGATTGTTCAGTTGTT+AGG - chr2_1:6012977-6012996 Msa0190520:intron 30.0%
ATTGATTGTTCAGTTGTTAG+GGG - chr2_1:6012979-6012998 Msa0190520:intron 30.0%
GCTTTCATGAAATGAATGAA+GGG - chr2_1:6013275-6013294 Msa0190520:intron 30.0%
CAAGAGTTTGTCTTTATCAA+GGG - chr2_1:6013810-6013829 Msa0190520:CDS 30.0%
TATATTGACGTCAGTAAAGA+AGG + chr2_1:6013866-6013885 None:intergenic 30.0%
!! CTTCTTTTGAAAATTCTGCT+CGG - chr2_1:6013946-6013965 Msa0190520:intron 30.0%
AAAATTCTGCTCGGTTAATT+TGG - chr2_1:6013955-6013974 Msa0190520:intron 30.0%
ATTCCATTACTAATGAGCAA+TGG - chr2_1:6014138-6014157 Msa0190520:intron 30.0%
TCAACTACATACACATTAAC+AGG + chr2_1:6014244-6014263 None:intergenic 30.0%
! TAATGTGTATGTAGTTGATG+TGG - chr2_1:6014246-6014265 Msa0190520:intron 30.0%
TATAATCTTCCATTGTCTTC+AGG - chr2_1:6014576-6014595 Msa0190520:intron 30.0%
ATAATCTTCCATTGTCTTCA+GGG - chr2_1:6014577-6014596 Msa0190520:intron 30.0%
ACGACCTATAAATGATTCAA+GGG + chr2_1:6014791-6014810 None:intergenic 30.0%
AACGACCTATAAATGATTCA+AGG + chr2_1:6014792-6014811 None:intergenic 30.0%
! TGTCACTTGTGTAAATGTAT+TGG - chr2_1:6015016-6015035 Msa0190520:CDS 30.0%
AATTCAACCTACACTCTTCT+TGG - chr2_1:6012505-6012524 Msa0190520:CDS 35.0%
! TTTCTTACCAAGAAGAGTGT+AGG + chr2_1:6012515-6012534 None:intergenic 35.0%
TCTTGGTAAGAAACCATTTC+TGG - chr2_1:6012522-6012541 Msa0190520:CDS 35.0%
CTTGGTAAGAAACCATTTCT+GGG - chr2_1:6012523-6012542 Msa0190520:CDS 35.0%
ACTCTATAATCAAGGGTTTG+TGG + chr2_1:6012658-6012677 None:intergenic 35.0%
!! GTTTGATGGAATGATAATGG+TGG - chr2_1:6012881-6012900 Msa0190520:CDS 35.0%
!! ATCTCAGTCTTTGTTATTGC+AGG - chr2_1:6013097-6013116 Msa0190520:CDS 35.0%
!!! AGGGTTTTAAAAAAGGTCTG+CGG + chr2_1:6013204-6013223 None:intergenic 35.0%
!!! CAGACCTTTTTTAAAACCCT+GGG - chr2_1:6013204-6013223 Msa0190520:CDS 35.0%
!!! GATACCCAGGGTTTTAAAAA+AGG + chr2_1:6013211-6013230 None:intergenic 35.0%
ACACATAAACATGATACCCA+GGG + chr2_1:6013223-6013242 None:intergenic 35.0%
GGCTTTCATGAAATGAATGA+AGG - chr2_1:6013274-6013293 Msa0190520:intron 35.0%
TCCTTGATAAACACCTAACT+CGG + chr2_1:6013307-6013326 None:intergenic 35.0%
TTAGGTGTTTATCAAGGACA+GGG - chr2_1:6013309-6013328 Msa0190520:intron 35.0%
ATACAGACCTACATTGTCAA+GGG + chr2_1:6013489-6013508 None:intergenic 35.0%
TATACAGACCTACATTGTCA+AGG + chr2_1:6013490-6013509 None:intergenic 35.0%
TTCAATGGAATATCATGCCA+GGG + chr2_1:6013554-6013573 None:intergenic 35.0%
CATGATATTCCATTGAAGCT+AGG - chr2_1:6013557-6013576 Msa0190520:intron 35.0%
! ATCTTTGCACTGGATTCTTT+TGG + chr2_1:6013614-6013633 None:intergenic 35.0%
AAAAGAATCCAGTGCAAAGA+TGG - chr2_1:6013613-6013632 Msa0190520:intron 35.0%
! TGGATTAGGGAAATGGATTT+AGG + chr2_1:6013788-6013807 None:intergenic 35.0%
ACAAACTCTTGGTTGGATTA+GGG + chr2_1:6013801-6013820 None:intergenic 35.0%
GATAAAGACAAACTCTTGGT+TGG + chr2_1:6013808-6013827 None:intergenic 35.0%
CCTTGATAAAGACAAACTCT+TGG + chr2_1:6013812-6013831 None:intergenic 35.0%
CCAAGAGTTTGTCTTTATCA+AGG - chr2_1:6013809-6013828 Msa0190520:CDS 35.0%
! TCGGTTAATTTGGCAAAGAT+TGG - chr2_1:6013965-6013984 Msa0190520:intron 35.0%
! CTCATTAGTAATGGAATACC+TGG + chr2_1:6014135-6014154 None:intergenic 35.0%
CATCCATTGCTCATTAGTAA+TGG + chr2_1:6014144-6014163 None:intergenic 35.0%
!! TTGAGATGACATAATGGACA+AGG + chr2_1:6014177-6014196 None:intergenic 35.0%
AGCATAGACATCAAGTAACT+AGG + chr2_1:6014458-6014477 None:intergenic 35.0%
TAGTTACTTGATGTCTATGC+TGG - chr2_1:6014457-6014476 Msa0190520:intron 35.0%
AGAGACTATAAGATACCTGA+TGG - chr2_1:6014628-6014647 Msa0190520:intron 35.0%
GAGACTATAAGATACCTGAT+GGG - chr2_1:6014629-6014648 Msa0190520:intron 35.0%
! AAAGTACCTTATTTACTGCC+TGG + chr2_1:6014684-6014703 None:intergenic 35.0%
ACGTCCCTTGAATCATTTAT+AGG - chr2_1:6014784-6014803 Msa0190520:intron 35.0%
! TTAATGGCCACATTTTGTCT+CGG - chr2_1:6014875-6014894 Msa0190520:CDS 35.0%
AAAATAGCCGAGACAAAATG+TGG + chr2_1:6014885-6014904 None:intergenic 35.0%
!! TTTTGTCTCGGCTATTTTCA+TGG - chr2_1:6014887-6014906 Msa0190520:CDS 35.0%
! AACTCTTTTGTTGAGCTTCA+CGG - chr2_1:6015094-6015113 Msa0190520:five_prime_UTR 35.0%
! CTTTGACATCAATTCCCTTT+TGG - chr2_1:6015123-6015142 Msa0190520:five_prime_UTR 35.0%
TGTAGAACAGAAAAGCAAGA+TGG + chr2_1:6015175-6015194 None:intergenic 35.0%
!! GTGTGACTCTTGTTTCTGAT+AGG + chr2_1:6012381-6012400 None:intergenic 40.0%
GTTGAAACCTCAAAAGACAG+TGG + chr2_1:6012428-6012447 None:intergenic 40.0%
! TGGATGCTGATGATGATGTT+TGG + chr2_1:6012450-6012469 None:intergenic 40.0%
AACATCATCATCAGCATCCA+TGG - chr2_1:6012450-6012469 Msa0190520:three_prime_UTR 40.0%
! TGAATTGCTGGCTATGGTTA+TGG + chr2_1:6012491-6012510 None:intergenic 40.0%
! AAGAGTGTAGGTTGAATTGC+TGG + chr2_1:6012503-6012522 None:intergenic 40.0%
TCTTCGTCTCAACAATCTCA+AGG - chr2_1:6012555-6012574 Msa0190520:intron 40.0%
!! AGGTTTCTTCTAGAACTACC+AGG - chr2_1:6012575-6012594 Msa0190520:intron 40.0%
TACCAGGTCTTACACTTGTA+AGG - chr2_1:6012591-6012610 Msa0190520:intron 40.0%
TAAGGCTATCTATTACCCTG+AGG - chr2_1:6012609-6012628 Msa0190520:intron 40.0%
CAGGAAACCATAGTCAAATG+TGG - chr2_1:6013116-6013135 Msa0190520:CDS 40.0%
CCTATAGCCACATTTGACTA+TGG + chr2_1:6013126-6013145 None:intergenic 40.0%
CCATAGTCAAATGTGGCTAT+AGG - chr2_1:6013123-6013142 Msa0190520:CDS 40.0%
TGAGATGAGTCACAACATCA+AGG + chr2_1:6013180-6013199 None:intergenic 40.0%
!!! GCAGACCTTTTTTAAAACCC+TGG - chr2_1:6013203-6013222 Msa0190520:CDS 40.0%
CACACATAAACATGATACCC+AGG + chr2_1:6013224-6013243 None:intergenic 40.0%
CATTCATTTCATGAAAGCCG+AGG + chr2_1:6013273-6013292 None:intergenic 40.0%
TCATGAAATGAATGAAGGGC+AGG - chr2_1:6013279-6013298 Msa0190520:intron 40.0%
GTTAGGTGTTTATCAAGGAC+AGG - chr2_1:6013308-6013327 Msa0190520:intron 40.0%
! AGTGTTAGTTTACTGCAACG+TGG - chr2_1:6013459-6013478 Msa0190520:intron 40.0%
! GTGTTAGTTTACTGCAACGT+GGG - chr2_1:6013460-6013479 Msa0190520:intron 40.0%
AAAATTTGCAGGTTTCTCCC+TGG - chr2_1:6013534-6013553 Msa0190520:intron 40.0%
CTTCAATGGAATATCATGCC+AGG + chr2_1:6013555-6013574 None:intergenic 40.0%
ATTCCATTGAAGCTAGGTGA+TGG - chr2_1:6013563-6013582 Msa0190520:intron 40.0%
TCCTGTTTAATGGGAGTGAA+AGG + chr2_1:6013656-6013675 None:intergenic 40.0%
!! AGCTTTGAAGTTGTCACTCA+CGG + chr2_1:6013707-6013726 None:intergenic 40.0%
! TCTTGGTTGGATTAGGGAAA+TGG + chr2_1:6013795-6013814 None:intergenic 40.0%
GACAAACTCTTGGTTGGATT+AGG + chr2_1:6013802-6013821 None:intergenic 40.0%
! ACTTCATGGTTTGCAAGAGA+TGG + chr2_1:6014087-6014106 None:intergenic 40.0%
CTTGCAAACCATGAAGTTGA+AGG - chr2_1:6014090-6014109 Msa0190520:intron 40.0%
CAAATGCTCCTTCAACTTCA+TGG + chr2_1:6014101-6014120 None:intergenic 40.0%
!! CATGAAGTTGAAGGAGCATT+TGG - chr2_1:6014099-6014118 Msa0190520:intron 40.0%
GCATTTGGAGATAATGATCC+AGG - chr2_1:6014114-6014133 Msa0190520:intron 40.0%
!! GATGACATAATGGACAAGGT+TGG + chr2_1:6014173-6014192 None:intergenic 40.0%
! GTAGTTGATGTGGTTGAGAT+CGG - chr2_1:6014256-6014275 Msa0190520:intron 40.0%
ATCATGGCTAATGCAGCTAA+GGG + chr2_1:6014322-6014341 None:intergenic 40.0%
AATCATGGCTAATGCAGCTA+AGG + chr2_1:6014323-6014342 None:intergenic 40.0%
AAGTTCTCCTTCGTCAATCA+TGG + chr2_1:6014338-6014357 None:intergenic 40.0%
TTGACGAAGGAGAACTTGAT+TGG - chr2_1:6014341-6014360 Msa0190520:intron 40.0%
! TCGTTCACAAGTGAAGCTTT+TGG + chr2_1:6014394-6014413 None:intergenic 40.0%
AACTAGGTAACGAAGCTTAC+TGG + chr2_1:6014442-6014461 None:intergenic 40.0%
TTCTTGATGCGATACTCTGT+TGG - chr2_1:6014523-6014542 Msa0190520:intron 40.0%
AGGGAACCCTTATTGCAATT+AGG - chr2_1:6014596-6014615 Msa0190520:intron 40.0%
GGGAACCCTTATTGCAATTA+GGG - chr2_1:6014597-6014616 Msa0190520:intron 40.0%
CCAGTCCCTAATTGCAATAA+GGG + chr2_1:6014605-6014624 None:intergenic 40.0%
ACCAGTCCCTAATTGCAATA+AGG + chr2_1:6014606-6014625 None:intergenic 40.0%
CCAAGACCAAATCTATTAGC+AGG + chr2_1:6014658-6014677 None:intergenic 40.0%
! CCTGCTAATAGATTTGGTCT+TGG - chr2_1:6014655-6014674 Msa0190520:intron 40.0%
! ACATCAATTCCCTTTTGGTC+AGG - chr2_1:6015128-6015147 Msa0190520:five_prime_UTR 40.0%
TAACTAGTGCCTGACCAAAA+GGG + chr2_1:6015140-6015159 None:intergenic 40.0%
TTAACTAGTGCCTGACCAAA+AGG + chr2_1:6015141-6015160 None:intergenic 40.0%
! TCCACTTCCACTGTCTTTTG+AGG - chr2_1:6012418-6012437 Msa0190520:three_prime_UTR 45.0%
ACCTCAAAAGACAGTGGAAG+TGG + chr2_1:6012422-6012441 None:intergenic 45.0%
ATCATCATCAGCATCCATGG+CGG - chr2_1:6012453-6012472 Msa0190520:three_prime_UTR 45.0%
! GTAGGTTGAATTGCTGGCTA+TGG + chr2_1:6012497-6012516 None:intergenic 45.0%
! GGTAAGAAACCATTTCTGGG+TGG - chr2_1:6012526-6012545 Msa0190520:CDS 45.0%
AGCCTTACAAGTGTAAGACC+TGG + chr2_1:6012596-6012615 None:intergenic 45.0%
TTACCCTGAGGTTTCTGTCA+AGG - chr2_1:6012621-6012640 Msa0190520:intron 45.0%
TGGCTATAGGACCTTGATCA+CGG - chr2_1:6013136-6013155 Msa0190520:CDS 45.0%
! GGAAAAGTGTAGCGCAACAA+GGG + chr2_1:6013252-6013271 None:intergenic 45.0%
! AGGAAAAGTGTAGCGCAACA+AGG + chr2_1:6013253-6013272 None:intergenic 45.0%
! TGTTGCGCTACACTTTTCCT+CGG - chr2_1:6013253-6013272 Msa0190520:intron 45.0%
GCCGAGTTAGGTGTTTATCA+AGG - chr2_1:6013303-6013322 Msa0190520:intron 45.0%
ACACCATCACCTAGCTTCAA+TGG + chr2_1:6013569-6013588 None:intergenic 45.0%
AGAATCCAGTGCAAAGATGG+AGG - chr2_1:6013616-6013635 Msa0190520:intron 45.0%
GCCTTTCACTCCCATTAAAC+AGG - chr2_1:6013652-6013671 Msa0190520:intron 45.0%
!! GCTTTGAAGTTGTCACTCAC+GGG + chr2_1:6013706-6013725 None:intergenic 45.0%
ATGGCCTACTTCCACAAACA+TGG - chr2_1:6014055-6014074 Msa0190520:intron 45.0%
TGGCCTACTTCCACAAACAT+GGG - chr2_1:6014056-6014075 Msa0190520:intron 45.0%
CTTCCCATGTTTGTGGAAGT+AGG + chr2_1:6014062-6014081 None:intergenic 45.0%
GATGGATCTTCCCATGTTTG+TGG + chr2_1:6014069-6014088 None:intergenic 45.0%
GCATTAGCCATGATTGACGA+AGG - chr2_1:6014328-6014347 Msa0190520:intron 45.0%
TAAGGGTTCCCTGAAGACAA+TGG + chr2_1:6014588-6014607 None:intergenic 45.0%
CCCTTATTGCAATTAGGGAC+TGG - chr2_1:6014602-6014621 Msa0190520:intron 45.0%
GGGAAGCCTGCTAATAGATT+TGG - chr2_1:6014649-6014668 Msa0190520:intron 45.0%
!! TAGATTTGGTCTTGGCAACC+AGG - chr2_1:6014663-6014682 Msa0190520:intron 45.0%
TGGCAACCAGGCAGTAAATA+AGG - chr2_1:6014675-6014694 Msa0190520:intron 45.0%
TGAACAGGATTACGCGCTTA+AGG - chr2_1:6014930-6014949 Msa0190520:CDS 45.0%
AAGTTTACTCCACGACTCGT+TGG + chr2_1:6014968-6014987 None:intergenic 45.0%
GTGAAGAGATCAATTCCTGC+AGG - chr2_1:6014988-6015007 Msa0190520:CDS 45.0%
!! TATGGTTATGGCTCTGGTGG+TGG + chr2_1:6012479-6012498 None:intergenic 50.0%
CCTCCTTGACAGAAACCTCA+GGG + chr2_1:6012627-6012646 None:intergenic 50.0%
TCCTCCTTGACAGAAACCTC+AGG + chr2_1:6012628-6012647 None:intergenic 50.0%
GAGGTTTCTGTCAAGGAGGA+AGG - chr2_1:6012628-6012647 Msa0190520:intron 50.0%
AGCTGACAGAGTTGTCAGCA+AGG - chr2_1:6013057-6013076 Msa0190520:intron 50.0%
TGGGCTACCCTTGACAATGT+AGG - chr2_1:6013479-6013498 Msa0190520:intron 50.0%
ATGTGGTTGAGATCGGCGAT+AGG - chr2_1:6014263-6014282 Msa0190520:intron 50.0%
CTATTAGCAGGCTTCCCATC+AGG + chr2_1:6014646-6014665 None:intergenic 50.0%
!! GGCTATGGTTATGGCTCTGG+TGG + chr2_1:6012482-6012501 None:intergenic 55.0%
GCTGGCTATGGTTATGGCTC+TGG + chr2_1:6012485-6012504 None:intergenic 55.0%
AGAGCACGACCACCCAGAAA+TGG + chr2_1:6012538-6012557 None:intergenic 55.0%
CCCTGAGGTTTCTGTCAAGG+AGG - chr2_1:6012624-6012643 Msa0190520:intron 55.0%
TAGGACCTTGATCACGGTCG+CGG - chr2_1:6013142-6013161 Msa0190520:CDS 55.0%
GGCAACCTCCATCTTTGCAC+TGG + chr2_1:6013624-6013643 None:intergenic 55.0%
GTTGAGATCGGCGATAGGCA+GGG - chr2_1:6014268-6014287 Msa0190520:intron 55.0%
TTGAGATCGGCGATAGGCAG+GGG - chr2_1:6014269-6014288 Msa0190520:intron 55.0%
TAGGCAGGGGAAGATAGGAG+AGG - chr2_1:6014282-6014301 Msa0190520:intron 55.0%
TCACAGAGACCAACGAGTCG+TGG - chr2_1:6014956-6014975 Msa0190520:CDS 55.0%
ACAAGTGACAGCTCTCCTGC+AGG + chr2_1:6015006-6015025 None:intergenic 55.0%
TGTCTCCGCGACCGTGATCA+AGG + chr2_1:6013150-6013169 None:intergenic 60.0%
!! TGAAGGGCAGGTGCCGAGTT+AGG - chr2_1:6013291-6013310 Msa0190520:intron 60.0%
GGGAGTGAAAGGCTCGTCAG+TGG + chr2_1:6013645-6013664 None:intergenic 60.0%
GGTTGAGATCGGCGATAGGC+AGG - chr2_1:6014267-6014286 Msa0190520:intron 60.0%
GGCGATAGGCAGGGGAAGAT+AGG - chr2_1:6014277-6014296 Msa0190520:intron 60.0%
!! GGCTCTGGTGGTGGCCGCCA+TGG + chr2_1:6012470-6012489 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 6012286 6015219 6012286 ID=Msa0190520;Name=Msa0190520
chr2_1 mRNA 6012286 6015219 6012286 ID=Msa0190520-mRNA-1;Parent=Msa0190520;Name=Msa0190520-mRNA-1;_AED=0.06;_eAED=0.06;_QI=183|1|1|1|1|1|6|190|290
chr2_1 exon 6012286 6012568 6012286 ID=Msa0190520-mRNA-1:exon:2742;Parent=Msa0190520-mRNA-1
chr2_1 exon 6012809 6012907 6012809 ID=Msa0190520-mRNA-1:exon:2741;Parent=Msa0190520-mRNA-1
chr2_1 exon 6013064 6013245 6013064 ID=Msa0190520-mRNA-1:exon:2740;Parent=Msa0190520-mRNA-1
chr2_1 exon 6013370 6013470 6013370 ID=Msa0190520-mRNA-1:exon:2739;Parent=Msa0190520-mRNA-1
chr2_1 exon 6013800 6013960 6013800 ID=Msa0190520-mRNA-1:exon:2738;Parent=Msa0190520-mRNA-1
chr2_1 exon 6014800 6015219 6014800 ID=Msa0190520-mRNA-1:exon:2737;Parent=Msa0190520-mRNA-1
chr2_1 five_prime_UTR 6015037 6015219 6015037 ID=Msa0190520-mRNA-1:five_prime_utr;Parent=Msa0190520-mRNA-1
chr2_1 CDS 6014800 6015036 6014800 ID=Msa0190520-mRNA-1:cds;Parent=Msa0190520-mRNA-1
chr2_1 CDS 6013800 6013960 6013800 ID=Msa0190520-mRNA-1:cds;Parent=Msa0190520-mRNA-1
chr2_1 CDS 6013370 6013470 6013370 ID=Msa0190520-mRNA-1:cds;Parent=Msa0190520-mRNA-1
chr2_1 CDS 6013064 6013245 6013064 ID=Msa0190520-mRNA-1:cds;Parent=Msa0190520-mRNA-1
chr2_1 CDS 6012809 6012907 6012809 ID=Msa0190520-mRNA-1:cds;Parent=Msa0190520-mRNA-1
chr2_1 CDS 6012476 6012568 6012476 ID=Msa0190520-mRNA-1:cds;Parent=Msa0190520-mRNA-1
chr2_1 three_prime_UTR 6012286 6012475 6012286 ID=Msa0190520-mRNA-1:three_prime_utr;Parent=Msa0190520-mRNA-1
Gene Sequence

>Msa0190520

ATGGCGGCCACCACCAGAGCCATAACCATAGCCAGCAATTCAACCTACACTCTTCTTGGTAAGAAACCATTTCTGGGTGGTCGTGCTCTTCGTCTCAACAATCTCAAGGTTTCTTCTAGAACTACCAGGTCTTACACTTGTAAGGCTATCTATTACCCTGAGGTTTCTGTCAAGGAGGAAGGTGAACCACAAACCCTTGATTATAGAGTATTCTTTCATGACAAATCTGGTAAAAAGGTTTCTCCCTGGCATGATATTCCATTGAAGCTAGGTGATGGTGTCTTCAACTTCATTGTTGAAATACCAAAAGAATCCAGTGCAAAGATGGAGGTTGCCACTGACGAGCCTTTCACTCCCATTAAACAGGATACAAAAAAGGGAAAGCTTCGATTTTACCCCTATAATATACATTGGAACTATGGCCTACTTCCACAAACATGGGAAGATCCATCTCTTGCAAACCATGAAGTTGAAGGAGCATTTGGAGATAATGATCCAGTTGATGTGGTTGAGATCGGCGATAGGCAGGGGAAGATAGGAGAGGTTCTCAAAGTCAAACCCTTAGCTGCATTAGCCATGATTGACGAAGGAGAACTTGATTGGAAAATAGTTGCGATTTCATTAGATGATCCAAAAGCTTCACTTGTGAACGATGTTGATGATGTTGAGAAGCATTTTCCAGGAACCCTTATTGCAATTAGGGACTGGTTTAGAGACTATAAGATACCTGATGGGAAGCCTGCTAATAGATTTGGTCTTGGCAACCAGGCAGTAAATAAGGATTACGCGCTTAAGGTAATCACAGAGACCAACGAGTCGTGGAGTAAACTTGTGAAGAGATCAATTCCTGCAGGAGAGCTGTCACTTGTGTAA

Protein sequence

>Msa0190520

MAATTRAITIASNSTYTLLGKKPFLGGRALRLNNLKVSSRTTRSYTCKAIYYPEVSVKEEGEPQTLDYRVFFHDKSGKKVSPWHDIPLKLGDGVFNFIVEIPKESSAKMEVATDEPFTPIKQDTKKGKLRFYPYNIHWNYGLLPQTWEDPSLANHEVEGAFGDNDPVDVVEIGDRQGKIGEVLKVKPLAALAMIDEGELDWKIVAISLDDPKASLVNDVDDVEKHFPGTLIAIRDWFRDYKIPDGKPANRFGLGNQAVNKDYALKVITETNESWSKLVKRSIPAGELSLV*