Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0190520 | XP_003593342.1 | 99.310 | 290 | 2 | 0 | 1 | 290 | 1 | 290 | 0.0 | 592 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0190520 | sp|Q9LXC9|IPYR6_ARATH | 76.259 | 278 | 66 | 0 | 12 | 289 | 22 | 299 | 9.82e-156 | 439 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0190520 | B7FIM7 | 99.310 | 290 | 2 | 0 | 1 | 290 | 1 | 290 | 0.0 | 592 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0190520 | Msa0232710 | 0.970565 | 8.233104e-132 | -8.615850e-47 |
Msa0190520 | Msa0270560 | 0.803419 | 3.517859e-49 | -8.615850e-47 |
Msa0190520 | Msa0311260 | 0.970395 | 1.494015e-131 | -8.615850e-47 |
Msa0190520 | Msa0829820 | 0.990031 | 9.583216e-181 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0190520 | MtrunA17_Chr2g0280151 | 99.310 | 290 | 2 | 0 | 1 | 290 | 1 | 290 | 0.0 | 592 |
Msa0190520 | MtrunA17_Chr8g0372981 | 31.532 | 222 | 115 | 8 | 33 | 249 | 6 | 195 | 1.33e-17 | 79.7 |
Msa0190520 | MtrunA17_Chr8g0345781 | 29.412 | 204 | 113 | 7 | 82 | 282 | 40 | 215 | 1.40e-16 | 77.0 |
Msa0190520 | MtrunA17_Chr1g0182331 | 34.356 | 163 | 80 | 6 | 82 | 241 | 39 | 177 | 2.21e-15 | 73.6 |
Msa0190520 | MtrunA17_Chr5g0404551 | 32.919 | 161 | 85 | 5 | 82 | 241 | 36 | 174 | 3.32e-15 | 72.8 |
Msa0190520 | MtrunA17_Chr7g0276441 | 31.214 | 173 | 95 | 5 | 71 | 241 | 4 | 154 | 1.49e-13 | 67.8 |
Msa0190520 | MtrunA17_Chr1g0200691 | 33.108 | 148 | 77 | 4 | 94 | 241 | 134 | 259 | 3.32e-13 | 68.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0190520 | AT5G09650.1 | 76.259 | 278 | 66 | 0 | 12 | 289 | 22 | 299 | 9.99e-157 | 439 |
Msa0190520 | AT4G01480.1 | 32.941 | 170 | 87 | 6 | 75 | 241 | 32 | 177 | 4.20e-17 | 78.6 |
Msa0190520 | AT4G01480.2 | 32.941 | 170 | 87 | 6 | 75 | 241 | 32 | 177 | 4.20e-17 | 78.6 |
Msa0190520 | AT1G01050.1 | 34.969 | 163 | 79 | 6 | 82 | 241 | 35 | 173 | 7.60e-17 | 77.8 |
Msa0190520 | AT1G01050.2 | 34.969 | 163 | 79 | 6 | 82 | 241 | 35 | 173 | 7.60e-17 | 77.8 |
Msa0190520 | AT3G53620.1 | 32.039 | 206 | 99 | 9 | 41 | 241 | 8 | 177 | 3.55e-16 | 76.3 |
Msa0190520 | AT2G46860.1 | 33.929 | 168 | 84 | 6 | 82 | 246 | 39 | 182 | 4.78e-15 | 72.8 |
Msa0190520 | AT2G18230.1 | 32.967 | 182 | 92 | 8 | 65 | 241 | 23 | 179 | 1.93e-14 | 71.2 |
Find 96 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTTGGTAAGAAACCATTTC+TGG | 0.173743 | 2_1:-6014961 | Msa0190520:CDS |
CAAATGCTCCTTCAACTTCA+TGG | 0.239095 | 2_1:+6013385 | None:intergenic |
ATCTTTGCACTGGATTCTTT+TGG | 0.250632 | 2_1:+6013872 | None:intergenic |
CTTTGACATCAATTCCCTTT+TGG | 0.261057 | 2_1:-6012360 | Msa0190520:three_prime_UTR |
TCATGACAAATCTGGTAAAA+AGG | 0.262767 | 2_1:-6014799 | Msa0190520:intron |
AGGGAACCCTTATTGCAATT+AGG | 0.268966 | 2_1:-6012887 | Msa0190520:CDS |
ACCAGTCCCTAATTGCAATA+AGG | 0.278486 | 2_1:+6012880 | None:intergenic |
AATTCAACCTACACTCTTCT+TGG | 0.284493 | 2_1:-6014978 | Msa0190520:CDS |
GGGAACCCTTATTGCAATTA+GGG | 0.289010 | 2_1:-6012886 | Msa0190520:CDS |
CCAGTCCCTAATTGCAATAA+GGG | 0.339762 | 2_1:+6012881 | None:intergenic |
CATGAAGTTGAAGGAGCATT+TGG | 0.354647 | 2_1:-6013384 | Msa0190520:CDS |
TGAATTGCTGGCTATGGTTA+TGG | 0.358862 | 2_1:+6014995 | None:intergenic |
TATAATATACATTGGAACTA+TGG | 0.359484 | 2_1:-6013447 | Msa0190520:CDS |
TCGTTCACAAGTGAAGCTTT+TGG | 0.374309 | 2_1:+6013092 | None:intergenic |
GTGTGACTCTTGTTTCTGAT+AGG | 0.376333 | 2_1:+6015105 | None:intergenic |
GGGAAGCCTGCTAATAGATT+TGG | 0.387751 | 2_1:-6012834 | Msa0190520:CDS |
TGGCAACCAGGCAGTAAATA+AGG | 0.389560 | 2_1:-6012808 | Msa0190520:intron |
GTATTCTTTCATGACAAATC+TGG | 0.394289 | 2_1:-6014807 | Msa0190520:CDS |
TTGACGAAGGAGAACTTGAT+TGG | 0.399762 | 2_1:-6013142 | Msa0190520:CDS |
GCCTTTCACTCCCATTAAAC+AGG | 0.401068 | 2_1:-6013831 | Msa0190520:CDS |
TGAACAGGATTACGCGCTTA+AGG | 0.404300 | 2_1:-6012553 | Msa0190520:intron |
TTAACTAGTGCCTGACCAAA+AGG | 0.418456 | 2_1:+6012345 | None:intergenic |
AAGAGTGTAGGTTGAATTGC+TGG | 0.424489 | 2_1:+6014983 | None:intergenic |
TGGATGCTGATGATGATGTT+TGG | 0.428026 | 2_1:+6015036 | None:intergenic |
GGCTCTGGTGGTGGCCGCCA+TGG | 0.430082 | 2_1:+6015016 | None:intergenic |
CTTGGTAAGAAACCATTTCT+GGG | 0.434971 | 2_1:-6014960 | Msa0190520:CDS |
GAAAGAATACTCTATAATCA+AGG | 0.446305 | 2_1:+6014820 | None:intergenic |
AAAAGAATCCAGTGCAAAGA+TGG | 0.449123 | 2_1:-6013870 | Msa0190520:CDS |
TACCAGGTCTTACACTTGTA+AGG | 0.449419 | 2_1:-6014892 | Msa0190520:CDS |
ACACCATCACCTAGCTTCAA+TGG | 0.450128 | 2_1:+6013917 | None:intergenic |
GCTGGCTATGGTTATGGCTC+TGG | 0.453287 | 2_1:+6015001 | None:intergenic |
CTTGCAAACCATGAAGTTGA+AGG | 0.459429 | 2_1:-6013393 | Msa0190520:CDS |
ACTCTATAATCAAGGGTTTG+TGG | 0.461252 | 2_1:+6014828 | None:intergenic |
GGCGATAGGCAGGGGAAGAT+AGG | 0.464216 | 2_1:-6013206 | Msa0190520:CDS |
CCTGCTAATAGATTTGGTCT+TGG | 0.465825 | 2_1:-6012828 | Msa0190520:CDS |
ACTTCATGGTTTGCAAGAGA+TGG | 0.466731 | 2_1:+6013399 | None:intergenic |
GGTTGAGATCGGCGATAGGC+AGG | 0.466745 | 2_1:-6013216 | Msa0190520:CDS |
GGCAACCTCCATCTTTGCAC+TGG | 0.466901 | 2_1:+6013862 | None:intergenic |
ACCTCAAAAGACAGTGGAAG+TGG | 0.468008 | 2_1:+6015064 | None:intergenic |
CTATTAGCAGGCTTCCCATC+AGG | 0.470122 | 2_1:+6012840 | None:intergenic |
CCCTTATTGCAATTAGGGAC+TGG | 0.472680 | 2_1:-6012881 | Msa0190520:CDS |
CCAAGACCAAATCTATTAGC+AGG | 0.481701 | 2_1:+6012828 | None:intergenic |
AGAGCACGACCACCCAGAAA+TGG | 0.490032 | 2_1:+6014948 | None:intergenic |
AAAGTACCTTATTTACTGCC+TGG | 0.490502 | 2_1:+6012802 | None:intergenic |
GCATTTGGAGATAATGATCC+AGG | 0.493736 | 2_1:-6013369 | Msa0190520:intron |
AAGTTCTCCTTCGTCAATCA+TGG | 0.498398 | 2_1:+6013148 | None:intergenic |
CTTCCCATGTTTGTGGAAGT+AGG | 0.504751 | 2_1:+6013424 | None:intergenic |
TATGGTTATGGCTCTGGTGG+TGG | 0.505998 | 2_1:+6015007 | None:intergenic |
TTTCTAGCTATAATATACAT+TGG | 0.511801 | 2_1:-6013455 | Msa0190520:intron |
ATGGCCTACTTCCACAAACA+TGG | 0.512267 | 2_1:-6013428 | Msa0190520:CDS |
TCCTCCTTGACAGAAACCTC+AGG | 0.513243 | 2_1:+6014858 | None:intergenic |
TAGATTTGGTCTTGGCAACC+AGG | 0.513690 | 2_1:-6012820 | Msa0190520:CDS |
GATGGATCTTCCCATGTTTG+TGG | 0.513981 | 2_1:+6013417 | None:intergenic |
GGCTATGGTTATGGCTCTGG+TGG | 0.518181 | 2_1:+6015004 | None:intergenic |
AATCATGGCTAATGCAGCTA+AGG | 0.518417 | 2_1:+6013163 | None:intergenic |
AACATCATCATCAGCATCCA+TGG | 0.522592 | 2_1:-6015033 | Msa0190520:exon |
TCCTGTTTAATGGGAGTGAA+AGG | 0.527368 | 2_1:+6013830 | None:intergenic |
CTTCAATGGAATATCATGCC+AGG | 0.527404 | 2_1:+6013931 | None:intergenic |
TGTCACTTGTGTAAATGTAT+TGG | 0.532113 | 2_1:-6012467 | Msa0190520:exon |
GTAGGTTGAATTGCTGGCTA+TGG | 0.532311 | 2_1:+6014989 | None:intergenic |
TTGAGATCGGCGATAGGCAG+GGG | 0.555735 | 2_1:-6013214 | Msa0190520:CDS |
TTACCCTGAGGTTTCTGTCA+AGG | 0.559627 | 2_1:-6014862 | Msa0190520:CDS |
CATGATATTCCATTGAAGCT+AGG | 0.560093 | 2_1:-6013926 | Msa0190520:CDS |
AAAATTTGCAGGTTTCTCCC+TGG | 0.563605 | 2_1:-6013949 | Msa0190520:intron |
ACAAGTGACAGCTCTCCTGC+AGG | 0.563913 | 2_1:+6012480 | None:intergenic |
TCTTCGTCTCAACAATCTCA+AGG | 0.563936 | 2_1:-6014928 | Msa0190520:CDS |
TAACTAGTGCCTGACCAAAA+GGG | 0.564623 | 2_1:+6012346 | None:intergenic |
GAGGTTTCTGTCAAGGAGGA+AGG | 0.568482 | 2_1:-6014855 | Msa0190520:CDS |
TTTCTTACCAAGAAGAGTGT+AGG | 0.568894 | 2_1:+6014971 | None:intergenic |
GTGAAGAGATCAATTCCTGC+AGG | 0.569789 | 2_1:-6012495 | Msa0190520:CDS |
AGAGACTATAAGATACCTGA+TGG | 0.572431 | 2_1:-6012855 | Msa0190520:CDS |
AAAGAATACTCTATAATCAA+GGG | 0.573187 | 2_1:+6014821 | None:intergenic |
AGGTTTCTTCTAGAACTACC+AGG | 0.585474 | 2_1:-6014908 | Msa0190520:CDS |
TGTAGAACAGAAAAGCAAGA+TGG | 0.587036 | 2_1:+6012311 | None:intergenic |
GTAGTTGATGTGGTTGAGAT+CGG | 0.591253 | 2_1:-6013227 | Msa0190520:intron |
TTCAATGGAATATCATGCCA+GGG | 0.592635 | 2_1:+6013932 | None:intergenic |
GTTGAGATCGGCGATAGGCA+GGG | 0.598465 | 2_1:-6013215 | Msa0190520:CDS |
TCACAGAGACCAACGAGTCG+TGG | 0.599954 | 2_1:-6012527 | Msa0190520:CDS |
TAATGTGTATGTAGTTGATG+TGG | 0.600621 | 2_1:-6013237 | Msa0190520:intron |
GTTGAAACCTCAAAAGACAG+TGG | 0.616273 | 2_1:+6015058 | None:intergenic |
ATCATGGCTAATGCAGCTAA+GGG | 0.626205 | 2_1:+6013164 | None:intergenic |
ATGTGGTTGAGATCGGCGAT+AGG | 0.626574 | 2_1:-6013220 | Msa0190520:CDS |
AAGTTTACTCCACGACTCGT+TGG | 0.631147 | 2_1:+6012518 | None:intergenic |
AGAATCCAGTGCAAAGATGG+AGG | 0.633108 | 2_1:-6013867 | Msa0190520:CDS |
CCCTGAGGTTTCTGTCAAGG+AGG | 0.635768 | 2_1:-6014859 | Msa0190520:CDS |
TGGCCTACTTCCACAAACAT+GGG | 0.639890 | 2_1:-6013427 | Msa0190520:CDS |
CCTCCTTGACAGAAACCTCA+GGG | 0.648404 | 2_1:+6014859 | None:intergenic |
GGGAGTGAAAGGCTCGTCAG+TGG | 0.656681 | 2_1:+6013841 | None:intergenic |
GAGACTATAAGATACCTGAT+GGG | 0.657767 | 2_1:-6012854 | Msa0190520:CDS |
GCATTAGCCATGATTGACGA+AGG | 0.659093 | 2_1:-6013155 | Msa0190520:CDS |
TAAGGCTATCTATTACCCTG+AGG | 0.661825 | 2_1:-6014874 | Msa0190520:CDS |
AGCCTTACAAGTGTAAGACC+TGG | 0.666496 | 2_1:+6014890 | None:intergenic |
ATTCCATTGAAGCTAGGTGA+TGG | 0.692555 | 2_1:-6013920 | Msa0190520:CDS |
TAGGCAGGGGAAGATAGGAG+AGG | 0.698710 | 2_1:-6013201 | Msa0190520:CDS |
GGTAAGAAACCATTTCTGGG+TGG | 0.717977 | 2_1:-6014957 | Msa0190520:CDS |
ATCATCATCAGCATCCATGG+CGG | 0.719570 | 2_1:-6015030 | Msa0190520:exon |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTCCATTTCATAATAAAAAA+TGG | - | chr2_1:6012322-6012341 | Msa0190520:three_prime_UTR | 15.0% |
!!! | TTTTTTTCATTTGATCAATT+TGG | - | chr2_1:6012712-6012731 | Msa0190520:intron | 15.0% |
!!! | TTTTTTCATTTGATCAATTT+GGG | - | chr2_1:6012713-6012732 | Msa0190520:intron | 15.0% |
!!! | GAATTAAGAAATTATGATTT+TGG | - | chr2_1:6012786-6012805 | Msa0190520:intron | 15.0% |
!! | TAAGTAAATAAATTGTTGAA+TGG | - | chr2_1:6012907-6012926 | Msa0190520:intron | 15.0% |
!! | ATATTCTATACAGAATTATA+AGG | + | chr2_1:6013385-6013404 | None:intergenic | 15.0% |
!!! | TTAATTTTTCCTTTTCTTTA+TGG | + | chr2_1:6013421-6013440 | None:intergenic | 15.0% |
!!! | ATATAATTTGTAAAATTTGC+AGG | - | chr2_1:6013523-6013542 | Msa0190520:intron | 15.0% |
!! | GAAAAAATAATACAACAAAA+AGG | + | chr2_1:6013739-6013758 | None:intergenic | 15.0% |
!!! | TTGTTGTATTATTTTTTCTT+TGG | - | chr2_1:6013741-6013760 | Msa0190520:intron | 15.0% |
!!! | TGCCATTTTTTATTATGAAA+TGG | + | chr2_1:6012327-6012346 | None:intergenic | 20.0% |
!! | AAAGAATACTCTATAATCAA+GGG | + | chr2_1:6012665-6012684 | None:intergenic | 20.0% |
!!! | TTTTTTGTAATTGTGATGTT+GGG | - | chr2_1:6012754-6012773 | Msa0190520:intron | 20.0% |
!! | AAATATGAAAATCTAACACT+AGG | + | chr2_1:6013336-6013355 | None:intergenic | 20.0% |
!!! | GTGTTAGATTTTCATATTTT+TGG | - | chr2_1:6013337-6013356 | Msa0190520:intron | 20.0% |
!!! | TTTTTTGTATCCTGTTTAAT+GGG | + | chr2_1:6013665-6013684 | None:intergenic | 20.0% |
!! | ATTAAACAGGATACAAAAAA+GGG | - | chr2_1:6013665-6013684 | Msa0190520:intron | 20.0% |
!! | TAAACGATATATTTCACAAT+AGG | + | chr2_1:6014003-6014022 | None:intergenic | 20.0% |
!!! | TTTCTAGCTATAATATACAT+TGG | - | chr2_1:6014028-6014047 | Msa0190520:intron | 20.0% |
!! | TATAATATACATTGGAACTA+TGG | - | chr2_1:6014036-6014055 | Msa0190520:intron | 20.0% |
!! | AACAGAATAAAGAATTCATT+AGG | + | chr2_1:6014733-6014752 | None:intergenic | 20.0% |
!! | AATTAAAAAAATGCAAGCAT+TGG | + | chr2_1:6015062-6015081 | None:intergenic | 20.0% |
! | GAAAGAATACTCTATAATCA+AGG | + | chr2_1:6012666-6012685 | None:intergenic | 25.0% |
!!! | AATTTGGGTATTGAAGTTTT+GGG | - | chr2_1:6012728-6012747 | Msa0190520:intron | 25.0% |
!!! | GTTTTTTGTAATTGTGATGT+TGG | - | chr2_1:6012753-6012772 | Msa0190520:intron | 25.0% |
! | CTATAGCAAATGATACAAAA+AGG | + | chr2_1:6012828-6012847 | None:intergenic | 25.0% |
! | TTTGTTTGATGGAATGATAA+TGG | - | chr2_1:6012878-6012897 | Msa0190520:CDS | 25.0% |
! | GTAAATAAATTGTTGAATGG+TGG | - | chr2_1:6012910-6012929 | Msa0190520:intron | 25.0% |
! | AATTGATTGTTCAGTTGTTA+GGG | - | chr2_1:6012978-6012997 | Msa0190520:intron | 25.0% |
!!! | TTTTCATATTTTTGGTTGCT+AGG | - | chr2_1:6013345-6013364 | Msa0190520:intron | 25.0% |
! | TTGACATTTCCATAAAGAAA+AGG | - | chr2_1:6013409-6013428 | Msa0190520:CDS | 25.0% |
!!! | CTTTTTTGTATCCTGTTTAA+TGG | + | chr2_1:6013666-6013685 | None:intergenic | 25.0% |
! | CATTAAACAGGATACAAAAA+AGG | - | chr2_1:6013664-6013683 | Msa0190520:intron | 25.0% |
! | ATTTCACAATAGGTTACATA+TGG | + | chr2_1:6013993-6014012 | None:intergenic | 25.0% |
! | AAGATATTGAGATGACATAA+TGG | + | chr2_1:6014183-6014202 | None:intergenic | 25.0% |
!! | TACACATTAACAGGAATTTT+AGG | + | chr2_1:6014235-6014254 | None:intergenic | 25.0% |
! | TAACGAAAGTTTCATTAAGA+TGG | - | chr2_1:6014491-6014510 | Msa0190520:intron | 25.0% |
! | ATTATCTACTGCAATGTTAA+TGG | - | chr2_1:6014859-6014878 | Msa0190520:CDS | 25.0% |
!!! | CAAACTTATTTTTTGTGAAC+AGG | - | chr2_1:6014915-6014934 | Msa0190520:CDS | 25.0% |
GTATTCTTTCATGACAAATC+TGG | - | chr2_1:6012676-6012695 | Msa0190520:intron | 30.0% | |
TCATGACAAATCTGGTAAAA+AGG | - | chr2_1:6012684-6012703 | Msa0190520:intron | 30.0% | |
!!! | CAATTTGGGTATTGAAGTTT+TGG | - | chr2_1:6012727-6012746 | Msa0190520:intron | 30.0% |
!!! | ATTTGGGTATTGAAGTTTTG+GGG | - | chr2_1:6012729-6012748 | Msa0190520:intron | 30.0% |
! | AGATGATGATGTCATTGATT+TGG | - | chr2_1:6012850-6012869 | Msa0190520:CDS | 30.0% |
!! | GATGATGATGTCATTGATTT+GGG | - | chr2_1:6012851-6012870 | Msa0190520:CDS | 30.0% |
!! | ATGATGATGTCATTGATTTG+GGG | - | chr2_1:6012852-6012871 | Msa0190520:CDS | 30.0% |
!! | ATTTGGGGATTTTTGTTTGA+TGG | - | chr2_1:6012867-6012886 | Msa0190520:CDS | 30.0% |
CAATTGATTGTTCAGTTGTT+AGG | - | chr2_1:6012977-6012996 | Msa0190520:intron | 30.0% | |
ATTGATTGTTCAGTTGTTAG+GGG | - | chr2_1:6012979-6012998 | Msa0190520:intron | 30.0% | |
GCTTTCATGAAATGAATGAA+GGG | - | chr2_1:6013275-6013294 | Msa0190520:intron | 30.0% | |
CAAGAGTTTGTCTTTATCAA+GGG | - | chr2_1:6013810-6013829 | Msa0190520:CDS | 30.0% | |
TATATTGACGTCAGTAAAGA+AGG | + | chr2_1:6013866-6013885 | None:intergenic | 30.0% | |
!! | CTTCTTTTGAAAATTCTGCT+CGG | - | chr2_1:6013946-6013965 | Msa0190520:intron | 30.0% |
AAAATTCTGCTCGGTTAATT+TGG | - | chr2_1:6013955-6013974 | Msa0190520:intron | 30.0% | |
ATTCCATTACTAATGAGCAA+TGG | - | chr2_1:6014138-6014157 | Msa0190520:intron | 30.0% | |
TCAACTACATACACATTAAC+AGG | + | chr2_1:6014244-6014263 | None:intergenic | 30.0% | |
! | TAATGTGTATGTAGTTGATG+TGG | - | chr2_1:6014246-6014265 | Msa0190520:intron | 30.0% |
TATAATCTTCCATTGTCTTC+AGG | - | chr2_1:6014576-6014595 | Msa0190520:intron | 30.0% | |
ATAATCTTCCATTGTCTTCA+GGG | - | chr2_1:6014577-6014596 | Msa0190520:intron | 30.0% | |
ACGACCTATAAATGATTCAA+GGG | + | chr2_1:6014791-6014810 | None:intergenic | 30.0% | |
AACGACCTATAAATGATTCA+AGG | + | chr2_1:6014792-6014811 | None:intergenic | 30.0% | |
! | TGTCACTTGTGTAAATGTAT+TGG | - | chr2_1:6015016-6015035 | Msa0190520:CDS | 30.0% |
AATTCAACCTACACTCTTCT+TGG | - | chr2_1:6012505-6012524 | Msa0190520:CDS | 35.0% | |
! | TTTCTTACCAAGAAGAGTGT+AGG | + | chr2_1:6012515-6012534 | None:intergenic | 35.0% |
TCTTGGTAAGAAACCATTTC+TGG | - | chr2_1:6012522-6012541 | Msa0190520:CDS | 35.0% | |
CTTGGTAAGAAACCATTTCT+GGG | - | chr2_1:6012523-6012542 | Msa0190520:CDS | 35.0% | |
ACTCTATAATCAAGGGTTTG+TGG | + | chr2_1:6012658-6012677 | None:intergenic | 35.0% | |
!! | GTTTGATGGAATGATAATGG+TGG | - | chr2_1:6012881-6012900 | Msa0190520:CDS | 35.0% |
!! | ATCTCAGTCTTTGTTATTGC+AGG | - | chr2_1:6013097-6013116 | Msa0190520:CDS | 35.0% |
!!! | AGGGTTTTAAAAAAGGTCTG+CGG | + | chr2_1:6013204-6013223 | None:intergenic | 35.0% |
!!! | CAGACCTTTTTTAAAACCCT+GGG | - | chr2_1:6013204-6013223 | Msa0190520:CDS | 35.0% |
!!! | GATACCCAGGGTTTTAAAAA+AGG | + | chr2_1:6013211-6013230 | None:intergenic | 35.0% |
ACACATAAACATGATACCCA+GGG | + | chr2_1:6013223-6013242 | None:intergenic | 35.0% | |
GGCTTTCATGAAATGAATGA+AGG | - | chr2_1:6013274-6013293 | Msa0190520:intron | 35.0% | |
TCCTTGATAAACACCTAACT+CGG | + | chr2_1:6013307-6013326 | None:intergenic | 35.0% | |
TTAGGTGTTTATCAAGGACA+GGG | - | chr2_1:6013309-6013328 | Msa0190520:intron | 35.0% | |
ATACAGACCTACATTGTCAA+GGG | + | chr2_1:6013489-6013508 | None:intergenic | 35.0% | |
TATACAGACCTACATTGTCA+AGG | + | chr2_1:6013490-6013509 | None:intergenic | 35.0% | |
TTCAATGGAATATCATGCCA+GGG | + | chr2_1:6013554-6013573 | None:intergenic | 35.0% | |
CATGATATTCCATTGAAGCT+AGG | - | chr2_1:6013557-6013576 | Msa0190520:intron | 35.0% | |
! | ATCTTTGCACTGGATTCTTT+TGG | + | chr2_1:6013614-6013633 | None:intergenic | 35.0% |
AAAAGAATCCAGTGCAAAGA+TGG | - | chr2_1:6013613-6013632 | Msa0190520:intron | 35.0% | |
! | TGGATTAGGGAAATGGATTT+AGG | + | chr2_1:6013788-6013807 | None:intergenic | 35.0% |
ACAAACTCTTGGTTGGATTA+GGG | + | chr2_1:6013801-6013820 | None:intergenic | 35.0% | |
GATAAAGACAAACTCTTGGT+TGG | + | chr2_1:6013808-6013827 | None:intergenic | 35.0% | |
CCTTGATAAAGACAAACTCT+TGG | + | chr2_1:6013812-6013831 | None:intergenic | 35.0% | |
CCAAGAGTTTGTCTTTATCA+AGG | - | chr2_1:6013809-6013828 | Msa0190520:CDS | 35.0% | |
! | TCGGTTAATTTGGCAAAGAT+TGG | - | chr2_1:6013965-6013984 | Msa0190520:intron | 35.0% |
! | CTCATTAGTAATGGAATACC+TGG | + | chr2_1:6014135-6014154 | None:intergenic | 35.0% |
CATCCATTGCTCATTAGTAA+TGG | + | chr2_1:6014144-6014163 | None:intergenic | 35.0% | |
!! | TTGAGATGACATAATGGACA+AGG | + | chr2_1:6014177-6014196 | None:intergenic | 35.0% |
AGCATAGACATCAAGTAACT+AGG | + | chr2_1:6014458-6014477 | None:intergenic | 35.0% | |
TAGTTACTTGATGTCTATGC+TGG | - | chr2_1:6014457-6014476 | Msa0190520:intron | 35.0% | |
AGAGACTATAAGATACCTGA+TGG | - | chr2_1:6014628-6014647 | Msa0190520:intron | 35.0% | |
GAGACTATAAGATACCTGAT+GGG | - | chr2_1:6014629-6014648 | Msa0190520:intron | 35.0% | |
! | AAAGTACCTTATTTACTGCC+TGG | + | chr2_1:6014684-6014703 | None:intergenic | 35.0% |
ACGTCCCTTGAATCATTTAT+AGG | - | chr2_1:6014784-6014803 | Msa0190520:intron | 35.0% | |
! | TTAATGGCCACATTTTGTCT+CGG | - | chr2_1:6014875-6014894 | Msa0190520:CDS | 35.0% |
AAAATAGCCGAGACAAAATG+TGG | + | chr2_1:6014885-6014904 | None:intergenic | 35.0% | |
!! | TTTTGTCTCGGCTATTTTCA+TGG | - | chr2_1:6014887-6014906 | Msa0190520:CDS | 35.0% |
! | AACTCTTTTGTTGAGCTTCA+CGG | - | chr2_1:6015094-6015113 | Msa0190520:five_prime_UTR | 35.0% |
! | CTTTGACATCAATTCCCTTT+TGG | - | chr2_1:6015123-6015142 | Msa0190520:five_prime_UTR | 35.0% |
TGTAGAACAGAAAAGCAAGA+TGG | + | chr2_1:6015175-6015194 | None:intergenic | 35.0% | |
!! | GTGTGACTCTTGTTTCTGAT+AGG | + | chr2_1:6012381-6012400 | None:intergenic | 40.0% |
GTTGAAACCTCAAAAGACAG+TGG | + | chr2_1:6012428-6012447 | None:intergenic | 40.0% | |
! | TGGATGCTGATGATGATGTT+TGG | + | chr2_1:6012450-6012469 | None:intergenic | 40.0% |
AACATCATCATCAGCATCCA+TGG | - | chr2_1:6012450-6012469 | Msa0190520:three_prime_UTR | 40.0% | |
! | TGAATTGCTGGCTATGGTTA+TGG | + | chr2_1:6012491-6012510 | None:intergenic | 40.0% |
! | AAGAGTGTAGGTTGAATTGC+TGG | + | chr2_1:6012503-6012522 | None:intergenic | 40.0% |
TCTTCGTCTCAACAATCTCA+AGG | - | chr2_1:6012555-6012574 | Msa0190520:intron | 40.0% | |
!! | AGGTTTCTTCTAGAACTACC+AGG | - | chr2_1:6012575-6012594 | Msa0190520:intron | 40.0% |
TACCAGGTCTTACACTTGTA+AGG | - | chr2_1:6012591-6012610 | Msa0190520:intron | 40.0% | |
TAAGGCTATCTATTACCCTG+AGG | - | chr2_1:6012609-6012628 | Msa0190520:intron | 40.0% | |
CAGGAAACCATAGTCAAATG+TGG | - | chr2_1:6013116-6013135 | Msa0190520:CDS | 40.0% | |
CCTATAGCCACATTTGACTA+TGG | + | chr2_1:6013126-6013145 | None:intergenic | 40.0% | |
CCATAGTCAAATGTGGCTAT+AGG | - | chr2_1:6013123-6013142 | Msa0190520:CDS | 40.0% | |
TGAGATGAGTCACAACATCA+AGG | + | chr2_1:6013180-6013199 | None:intergenic | 40.0% | |
!!! | GCAGACCTTTTTTAAAACCC+TGG | - | chr2_1:6013203-6013222 | Msa0190520:CDS | 40.0% |
CACACATAAACATGATACCC+AGG | + | chr2_1:6013224-6013243 | None:intergenic | 40.0% | |
CATTCATTTCATGAAAGCCG+AGG | + | chr2_1:6013273-6013292 | None:intergenic | 40.0% | |
TCATGAAATGAATGAAGGGC+AGG | - | chr2_1:6013279-6013298 | Msa0190520:intron | 40.0% | |
GTTAGGTGTTTATCAAGGAC+AGG | - | chr2_1:6013308-6013327 | Msa0190520:intron | 40.0% | |
! | AGTGTTAGTTTACTGCAACG+TGG | - | chr2_1:6013459-6013478 | Msa0190520:intron | 40.0% |
! | GTGTTAGTTTACTGCAACGT+GGG | - | chr2_1:6013460-6013479 | Msa0190520:intron | 40.0% |
AAAATTTGCAGGTTTCTCCC+TGG | - | chr2_1:6013534-6013553 | Msa0190520:intron | 40.0% | |
CTTCAATGGAATATCATGCC+AGG | + | chr2_1:6013555-6013574 | None:intergenic | 40.0% | |
ATTCCATTGAAGCTAGGTGA+TGG | - | chr2_1:6013563-6013582 | Msa0190520:intron | 40.0% | |
TCCTGTTTAATGGGAGTGAA+AGG | + | chr2_1:6013656-6013675 | None:intergenic | 40.0% | |
!! | AGCTTTGAAGTTGTCACTCA+CGG | + | chr2_1:6013707-6013726 | None:intergenic | 40.0% |
! | TCTTGGTTGGATTAGGGAAA+TGG | + | chr2_1:6013795-6013814 | None:intergenic | 40.0% |
GACAAACTCTTGGTTGGATT+AGG | + | chr2_1:6013802-6013821 | None:intergenic | 40.0% | |
! | ACTTCATGGTTTGCAAGAGA+TGG | + | chr2_1:6014087-6014106 | None:intergenic | 40.0% |
CTTGCAAACCATGAAGTTGA+AGG | - | chr2_1:6014090-6014109 | Msa0190520:intron | 40.0% | |
CAAATGCTCCTTCAACTTCA+TGG | + | chr2_1:6014101-6014120 | None:intergenic | 40.0% | |
!! | CATGAAGTTGAAGGAGCATT+TGG | - | chr2_1:6014099-6014118 | Msa0190520:intron | 40.0% |
GCATTTGGAGATAATGATCC+AGG | - | chr2_1:6014114-6014133 | Msa0190520:intron | 40.0% | |
!! | GATGACATAATGGACAAGGT+TGG | + | chr2_1:6014173-6014192 | None:intergenic | 40.0% |
! | GTAGTTGATGTGGTTGAGAT+CGG | - | chr2_1:6014256-6014275 | Msa0190520:intron | 40.0% |
ATCATGGCTAATGCAGCTAA+GGG | + | chr2_1:6014322-6014341 | None:intergenic | 40.0% | |
AATCATGGCTAATGCAGCTA+AGG | + | chr2_1:6014323-6014342 | None:intergenic | 40.0% | |
AAGTTCTCCTTCGTCAATCA+TGG | + | chr2_1:6014338-6014357 | None:intergenic | 40.0% | |
TTGACGAAGGAGAACTTGAT+TGG | - | chr2_1:6014341-6014360 | Msa0190520:intron | 40.0% | |
! | TCGTTCACAAGTGAAGCTTT+TGG | + | chr2_1:6014394-6014413 | None:intergenic | 40.0% |
AACTAGGTAACGAAGCTTAC+TGG | + | chr2_1:6014442-6014461 | None:intergenic | 40.0% | |
TTCTTGATGCGATACTCTGT+TGG | - | chr2_1:6014523-6014542 | Msa0190520:intron | 40.0% | |
AGGGAACCCTTATTGCAATT+AGG | - | chr2_1:6014596-6014615 | Msa0190520:intron | 40.0% | |
GGGAACCCTTATTGCAATTA+GGG | - | chr2_1:6014597-6014616 | Msa0190520:intron | 40.0% | |
CCAGTCCCTAATTGCAATAA+GGG | + | chr2_1:6014605-6014624 | None:intergenic | 40.0% | |
ACCAGTCCCTAATTGCAATA+AGG | + | chr2_1:6014606-6014625 | None:intergenic | 40.0% | |
CCAAGACCAAATCTATTAGC+AGG | + | chr2_1:6014658-6014677 | None:intergenic | 40.0% | |
! | CCTGCTAATAGATTTGGTCT+TGG | - | chr2_1:6014655-6014674 | Msa0190520:intron | 40.0% |
! | ACATCAATTCCCTTTTGGTC+AGG | - | chr2_1:6015128-6015147 | Msa0190520:five_prime_UTR | 40.0% |
TAACTAGTGCCTGACCAAAA+GGG | + | chr2_1:6015140-6015159 | None:intergenic | 40.0% | |
TTAACTAGTGCCTGACCAAA+AGG | + | chr2_1:6015141-6015160 | None:intergenic | 40.0% | |
! | TCCACTTCCACTGTCTTTTG+AGG | - | chr2_1:6012418-6012437 | Msa0190520:three_prime_UTR | 45.0% |
ACCTCAAAAGACAGTGGAAG+TGG | + | chr2_1:6012422-6012441 | None:intergenic | 45.0% | |
ATCATCATCAGCATCCATGG+CGG | - | chr2_1:6012453-6012472 | Msa0190520:three_prime_UTR | 45.0% | |
! | GTAGGTTGAATTGCTGGCTA+TGG | + | chr2_1:6012497-6012516 | None:intergenic | 45.0% |
! | GGTAAGAAACCATTTCTGGG+TGG | - | chr2_1:6012526-6012545 | Msa0190520:CDS | 45.0% |
AGCCTTACAAGTGTAAGACC+TGG | + | chr2_1:6012596-6012615 | None:intergenic | 45.0% | |
TTACCCTGAGGTTTCTGTCA+AGG | - | chr2_1:6012621-6012640 | Msa0190520:intron | 45.0% | |
TGGCTATAGGACCTTGATCA+CGG | - | chr2_1:6013136-6013155 | Msa0190520:CDS | 45.0% | |
! | GGAAAAGTGTAGCGCAACAA+GGG | + | chr2_1:6013252-6013271 | None:intergenic | 45.0% |
! | AGGAAAAGTGTAGCGCAACA+AGG | + | chr2_1:6013253-6013272 | None:intergenic | 45.0% |
! | TGTTGCGCTACACTTTTCCT+CGG | - | chr2_1:6013253-6013272 | Msa0190520:intron | 45.0% |
GCCGAGTTAGGTGTTTATCA+AGG | - | chr2_1:6013303-6013322 | Msa0190520:intron | 45.0% | |
ACACCATCACCTAGCTTCAA+TGG | + | chr2_1:6013569-6013588 | None:intergenic | 45.0% | |
AGAATCCAGTGCAAAGATGG+AGG | - | chr2_1:6013616-6013635 | Msa0190520:intron | 45.0% | |
GCCTTTCACTCCCATTAAAC+AGG | - | chr2_1:6013652-6013671 | Msa0190520:intron | 45.0% | |
!! | GCTTTGAAGTTGTCACTCAC+GGG | + | chr2_1:6013706-6013725 | None:intergenic | 45.0% |
ATGGCCTACTTCCACAAACA+TGG | - | chr2_1:6014055-6014074 | Msa0190520:intron | 45.0% | |
TGGCCTACTTCCACAAACAT+GGG | - | chr2_1:6014056-6014075 | Msa0190520:intron | 45.0% | |
CTTCCCATGTTTGTGGAAGT+AGG | + | chr2_1:6014062-6014081 | None:intergenic | 45.0% | |
GATGGATCTTCCCATGTTTG+TGG | + | chr2_1:6014069-6014088 | None:intergenic | 45.0% | |
GCATTAGCCATGATTGACGA+AGG | - | chr2_1:6014328-6014347 | Msa0190520:intron | 45.0% | |
TAAGGGTTCCCTGAAGACAA+TGG | + | chr2_1:6014588-6014607 | None:intergenic | 45.0% | |
CCCTTATTGCAATTAGGGAC+TGG | - | chr2_1:6014602-6014621 | Msa0190520:intron | 45.0% | |
GGGAAGCCTGCTAATAGATT+TGG | - | chr2_1:6014649-6014668 | Msa0190520:intron | 45.0% | |
!! | TAGATTTGGTCTTGGCAACC+AGG | - | chr2_1:6014663-6014682 | Msa0190520:intron | 45.0% |
TGGCAACCAGGCAGTAAATA+AGG | - | chr2_1:6014675-6014694 | Msa0190520:intron | 45.0% | |
TGAACAGGATTACGCGCTTA+AGG | - | chr2_1:6014930-6014949 | Msa0190520:CDS | 45.0% | |
AAGTTTACTCCACGACTCGT+TGG | + | chr2_1:6014968-6014987 | None:intergenic | 45.0% | |
GTGAAGAGATCAATTCCTGC+AGG | - | chr2_1:6014988-6015007 | Msa0190520:CDS | 45.0% | |
!! | TATGGTTATGGCTCTGGTGG+TGG | + | chr2_1:6012479-6012498 | None:intergenic | 50.0% |
CCTCCTTGACAGAAACCTCA+GGG | + | chr2_1:6012627-6012646 | None:intergenic | 50.0% | |
TCCTCCTTGACAGAAACCTC+AGG | + | chr2_1:6012628-6012647 | None:intergenic | 50.0% | |
GAGGTTTCTGTCAAGGAGGA+AGG | - | chr2_1:6012628-6012647 | Msa0190520:intron | 50.0% | |
AGCTGACAGAGTTGTCAGCA+AGG | - | chr2_1:6013057-6013076 | Msa0190520:intron | 50.0% | |
TGGGCTACCCTTGACAATGT+AGG | - | chr2_1:6013479-6013498 | Msa0190520:intron | 50.0% | |
ATGTGGTTGAGATCGGCGAT+AGG | - | chr2_1:6014263-6014282 | Msa0190520:intron | 50.0% | |
CTATTAGCAGGCTTCCCATC+AGG | + | chr2_1:6014646-6014665 | None:intergenic | 50.0% | |
!! | GGCTATGGTTATGGCTCTGG+TGG | + | chr2_1:6012482-6012501 | None:intergenic | 55.0% |
GCTGGCTATGGTTATGGCTC+TGG | + | chr2_1:6012485-6012504 | None:intergenic | 55.0% | |
AGAGCACGACCACCCAGAAA+TGG | + | chr2_1:6012538-6012557 | None:intergenic | 55.0% | |
CCCTGAGGTTTCTGTCAAGG+AGG | - | chr2_1:6012624-6012643 | Msa0190520:intron | 55.0% | |
TAGGACCTTGATCACGGTCG+CGG | - | chr2_1:6013142-6013161 | Msa0190520:CDS | 55.0% | |
GGCAACCTCCATCTTTGCAC+TGG | + | chr2_1:6013624-6013643 | None:intergenic | 55.0% | |
GTTGAGATCGGCGATAGGCA+GGG | - | chr2_1:6014268-6014287 | Msa0190520:intron | 55.0% | |
TTGAGATCGGCGATAGGCAG+GGG | - | chr2_1:6014269-6014288 | Msa0190520:intron | 55.0% | |
TAGGCAGGGGAAGATAGGAG+AGG | - | chr2_1:6014282-6014301 | Msa0190520:intron | 55.0% | |
TCACAGAGACCAACGAGTCG+TGG | - | chr2_1:6014956-6014975 | Msa0190520:CDS | 55.0% | |
ACAAGTGACAGCTCTCCTGC+AGG | + | chr2_1:6015006-6015025 | None:intergenic | 55.0% | |
TGTCTCCGCGACCGTGATCA+AGG | + | chr2_1:6013150-6013169 | None:intergenic | 60.0% | |
!! | TGAAGGGCAGGTGCCGAGTT+AGG | - | chr2_1:6013291-6013310 | Msa0190520:intron | 60.0% |
GGGAGTGAAAGGCTCGTCAG+TGG | + | chr2_1:6013645-6013664 | None:intergenic | 60.0% | |
GGTTGAGATCGGCGATAGGC+AGG | - | chr2_1:6014267-6014286 | Msa0190520:intron | 60.0% | |
GGCGATAGGCAGGGGAAGAT+AGG | - | chr2_1:6014277-6014296 | Msa0190520:intron | 60.0% | |
!! | GGCTCTGGTGGTGGCCGCCA+TGG | + | chr2_1:6012470-6012489 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_1 | gene | 6012286 | 6015219 | 6012286 | ID=Msa0190520;Name=Msa0190520 |
chr2_1 | mRNA | 6012286 | 6015219 | 6012286 | ID=Msa0190520-mRNA-1;Parent=Msa0190520;Name=Msa0190520-mRNA-1;_AED=0.06;_eAED=0.06;_QI=183|1|1|1|1|1|6|190|290 |
chr2_1 | exon | 6012286 | 6012568 | 6012286 | ID=Msa0190520-mRNA-1:exon:2742;Parent=Msa0190520-mRNA-1 |
chr2_1 | exon | 6012809 | 6012907 | 6012809 | ID=Msa0190520-mRNA-1:exon:2741;Parent=Msa0190520-mRNA-1 |
chr2_1 | exon | 6013064 | 6013245 | 6013064 | ID=Msa0190520-mRNA-1:exon:2740;Parent=Msa0190520-mRNA-1 |
chr2_1 | exon | 6013370 | 6013470 | 6013370 | ID=Msa0190520-mRNA-1:exon:2739;Parent=Msa0190520-mRNA-1 |
chr2_1 | exon | 6013800 | 6013960 | 6013800 | ID=Msa0190520-mRNA-1:exon:2738;Parent=Msa0190520-mRNA-1 |
chr2_1 | exon | 6014800 | 6015219 | 6014800 | ID=Msa0190520-mRNA-1:exon:2737;Parent=Msa0190520-mRNA-1 |
chr2_1 | five_prime_UTR | 6015037 | 6015219 | 6015037 | ID=Msa0190520-mRNA-1:five_prime_utr;Parent=Msa0190520-mRNA-1 |
chr2_1 | CDS | 6014800 | 6015036 | 6014800 | ID=Msa0190520-mRNA-1:cds;Parent=Msa0190520-mRNA-1 |
chr2_1 | CDS | 6013800 | 6013960 | 6013800 | ID=Msa0190520-mRNA-1:cds;Parent=Msa0190520-mRNA-1 |
chr2_1 | CDS | 6013370 | 6013470 | 6013370 | ID=Msa0190520-mRNA-1:cds;Parent=Msa0190520-mRNA-1 |
chr2_1 | CDS | 6013064 | 6013245 | 6013064 | ID=Msa0190520-mRNA-1:cds;Parent=Msa0190520-mRNA-1 |
chr2_1 | CDS | 6012809 | 6012907 | 6012809 | ID=Msa0190520-mRNA-1:cds;Parent=Msa0190520-mRNA-1 |
chr2_1 | CDS | 6012476 | 6012568 | 6012476 | ID=Msa0190520-mRNA-1:cds;Parent=Msa0190520-mRNA-1 |
chr2_1 | three_prime_UTR | 6012286 | 6012475 | 6012286 | ID=Msa0190520-mRNA-1:three_prime_utr;Parent=Msa0190520-mRNA-1 |
Gene Sequence |
Protein sequence |