Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0311260 | XP_003593342.1 | 99.052 | 211 | 2 | 0 | 1 | 211 | 80 | 290 | 1.88e-150 | 429 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0311260 | sp|Q9LXC9|IPYR6_ARATH | 87.143 | 210 | 27 | 0 | 1 | 210 | 90 | 299 | 6.27e-134 | 380 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0188430 | Msa0311260 | 0.802015 | 6.856476e-49 | -8.615850e-47 |
| Msa0190520 | Msa0311260 | 0.970395 | 1.494015e-131 | -8.615850e-47 |
| Msa0232710 | Msa0311260 | 0.939668 | 8.625504e-100 | -8.615850e-47 |
| Msa0270560 | Msa0311260 | 0.817697 | 2.882251e-52 | -8.615850e-47 |
| Msa0311260 | Msa0829820 | 0.977879 | 1.136612e-144 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0311260 | MtrunA17_Chr2g0280151 | 99.052 | 211 | 2 | 0 | 1 | 211 | 80 | 290 | 1.73e-154 | 429 |
| Msa0311260 | MtrunA17_Chr8g0345781 | 33.333 | 168 | 85 | 6 | 3 | 167 | 40 | 183 | 7.11e-17 | 75.9 |
| Msa0311260 | MtrunA17_Chr8g0372981 | 33.918 | 171 | 86 | 6 | 3 | 170 | 49 | 195 | 5.59e-16 | 73.6 |
| Msa0311260 | MtrunA17_Chr5g0404551 | 32.919 | 161 | 85 | 5 | 3 | 162 | 36 | 174 | 7.79e-16 | 73.2 |
| Msa0311260 | MtrunA17_Chr1g0182331 | 34.356 | 163 | 80 | 6 | 3 | 162 | 39 | 177 | 1.06e-15 | 72.8 |
| Msa0311260 | MtrunA17_Chr1g0200691 | 33.108 | 148 | 77 | 4 | 15 | 162 | 134 | 259 | 1.40e-13 | 67.8 |
| Msa0311260 | MtrunA17_Chr7g0276441 | 31.757 | 148 | 79 | 4 | 15 | 162 | 29 | 154 | 2.86e-13 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0311260 | AT5G09650.1 | 87.143 | 210 | 27 | 0 | 1 | 210 | 90 | 299 | 6.38e-135 | 380 |
| Msa0311260 | AT4G01480.1 | 33.742 | 163 | 81 | 6 | 3 | 162 | 39 | 177 | 1.65e-17 | 78.2 |
| Msa0311260 | AT4G01480.2 | 33.742 | 163 | 81 | 6 | 3 | 162 | 39 | 177 | 1.65e-17 | 78.2 |
| Msa0311260 | AT1G01050.1 | 34.524 | 168 | 83 | 6 | 3 | 167 | 35 | 178 | 2.57e-17 | 77.4 |
| Msa0311260 | AT1G01050.2 | 34.524 | 168 | 83 | 6 | 3 | 167 | 35 | 178 | 2.57e-17 | 77.4 |
| Msa0311260 | AT3G53620.1 | 34.356 | 163 | 80 | 6 | 3 | 162 | 39 | 177 | 3.33e-16 | 74.3 |
| Msa0311260 | AT2G46860.1 | 33.929 | 168 | 84 | 6 | 3 | 167 | 39 | 182 | 1.74e-15 | 72.4 |
| Msa0311260 | AT2G18230.1 | 32.738 | 168 | 86 | 6 | 3 | 167 | 41 | 184 | 1.23e-14 | 70.5 |
Find 57 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATGCTCCTTCAACTTCA+TGG | 0.239095 | 2_4:-6122523 | None:intergenic |
| ATCTTTGCACTGGATTCTTT+TGG | 0.250632 | 2_4:-6122033 | None:intergenic |
| AGGGAACCCTTATTGCAATT+AGG | 0.268966 | 2_4:+6123021 | Msa0311260:intron |
| ACCAGTCCCTAATTGCAATA+AGG | 0.278486 | 2_4:-6123028 | None:intergenic |
| GGGAACCCTTATTGCAATTA+GGG | 0.289010 | 2_4:+6123022 | Msa0311260:intron |
| CCAGTCCCTAATTGCAATAA+GGG | 0.339762 | 2_4:-6123027 | None:intergenic |
| CATGAAGTTGAAGGAGCATT+TGG | 0.354647 | 2_4:+6122524 | Msa0311260:CDS |
| TATAATATACATTGGAACTA+TGG | 0.359484 | 2_4:+6122461 | Msa0311260:CDS |
| TCGTTCACAAGTGAAGCTTT+TGG | 0.374309 | 2_4:-6122816 | None:intergenic |
| GGGAAGCCTGCTAATAGATT+TGG | 0.387751 | 2_4:+6123074 | Msa0311260:CDS |
| TGGCAACCAGGCAGTAAATA+AGG | 0.389560 | 2_4:+6123100 | Msa0311260:CDS |
| TTGACGAAGGAGAACTTGAT+TGG | 0.399762 | 2_4:+6122766 | Msa0311260:CDS |
| GCCTTTCACTCCCATTAAAC+AGG | 0.401068 | 2_4:+6122074 | Msa0311260:CDS |
| TGAACAGGATTACGCGCTTA+AGG | 0.404300 | 2_4:+6123355 | Msa0311260:intron |
| AAAAGAATCCAGTGCAAAGA+TGG | 0.449123 | 2_4:+6122035 | Msa0311260:CDS |
| ACACCATCACCTAGCTTCAA+TGG | 0.450128 | 2_4:-6121988 | None:intergenic |
| CTTGCAAACCATGAAGTTGA+AGG | 0.459429 | 2_4:+6122515 | Msa0311260:CDS |
| GGCGATAGGCAGGGGAAGAT+AGG | 0.464216 | 2_4:+6122702 | Msa0311260:CDS |
| CCTGCTAATAGATTTGGTCT+TGG | 0.465825 | 2_4:+6123080 | Msa0311260:CDS |
| ACTTCATGGTTTGCAAGAGA+TGG | 0.466731 | 2_4:-6122509 | None:intergenic |
| GGTTGAGATCGGCGATAGGC+AGG | 0.466745 | 2_4:+6122692 | Msa0311260:CDS |
| GGCAACCTCCATCTTTGCAC+TGG | 0.466901 | 2_4:-6122043 | None:intergenic |
| CTATTAGCAGGCTTCCCATC+AGG | 0.470122 | 2_4:-6123068 | None:intergenic |
| CCCTTATTGCAATTAGGGAC+TGG | 0.472680 | 2_4:+6123027 | Msa0311260:CDS |
| CCAAGACCAAATCTATTAGC+AGG | 0.481701 | 2_4:-6123080 | None:intergenic |
| AAAGTACCTTATTTACTGCC+TGG | 0.490502 | 2_4:-6123106 | None:intergenic |
| GCATTTGGAGATAATGATCC+AGG | 0.493736 | 2_4:+6122539 | Msa0311260:CDS |
| AAGTTCTCCTTCGTCAATCA+TGG | 0.498398 | 2_4:-6122760 | None:intergenic |
| CTTCCCATGTTTGTGGAAGT+AGG | 0.504751 | 2_4:-6122484 | None:intergenic |
| TTTCTAGCTATAATATACAT+TGG | 0.511801 | 2_4:+6122453 | Msa0311260:intron |
| ATGGCCTACTTCCACAAACA+TGG | 0.512267 | 2_4:+6122480 | Msa0311260:CDS |
| TAGATTTGGTCTTGGCAACC+AGG | 0.513690 | 2_4:+6123088 | Msa0311260:CDS |
| GATGGATCTTCCCATGTTTG+TGG | 0.513981 | 2_4:-6122491 | None:intergenic |
| AATCATGGCTAATGCAGCTA+AGG | 0.518417 | 2_4:-6122745 | None:intergenic |
| TCCTGTTTAATGGGAGTGAA+AGG | 0.527368 | 2_4:-6122075 | None:intergenic |
| CTTCAATGGAATATCATGCC+AGG | 0.527404 | 2_4:-6121974 | None:intergenic |
| TTGAGATCGGCGATAGGCAG+GGG | 0.555735 | 2_4:+6122694 | Msa0311260:CDS |
| CATGATATTCCATTGAAGCT+AGG | 0.560093 | 2_4:+6121979 | Msa0311260:CDS |
| AAAATTTGCAGGTTTCTCCC+TGG | 0.563605 | 2_4:+6121956 | None:intergenic |
| ACAAGTGACAGCTCTCCTGC+AGG | 0.563913 | 2_4:-6123428 | None:intergenic |
| GTGAAGAGATCAATTCCTGC+AGG | 0.569789 | 2_4:+6123413 | Msa0311260:CDS |
| AGAGACTATAAGATACCTGA+TGG | 0.572431 | 2_4:+6123053 | Msa0311260:CDS |
| GTAGTTGATGTGGTTGAGAT+CGG | 0.591253 | 2_4:+6122681 | Msa0311260:intron |
| TTCAATGGAATATCATGCCA+GGG | 0.592635 | 2_4:-6121973 | None:intergenic |
| GTTGAGATCGGCGATAGGCA+GGG | 0.598465 | 2_4:+6122693 | Msa0311260:CDS |
| TCACAGAGACCAACGAGTCG+TGG | 0.599954 | 2_4:+6123381 | Msa0311260:CDS |
| TAATCTGTATGTAGTTGATG+TGG | 0.608008 | 2_4:+6122671 | Msa0311260:intron |
| ATCATGGCTAATGCAGCTAA+GGG | 0.626205 | 2_4:-6122744 | None:intergenic |
| ATGTGGTTGAGATCGGCGAT+AGG | 0.626574 | 2_4:+6122688 | Msa0311260:CDS |
| AAGTTTACTCCACGACTCGT+TGG | 0.631147 | 2_4:-6123390 | None:intergenic |
| AGAATCCAGTGCAAAGATGG+AGG | 0.633108 | 2_4:+6122038 | Msa0311260:CDS |
| TGGCCTACTTCCACAAACAT+GGG | 0.639890 | 2_4:+6122481 | Msa0311260:CDS |
| GGGAGTGAAAGGCTCGTCAG+TGG | 0.656681 | 2_4:-6122064 | None:intergenic |
| GAGACTATAAGATACCTGAT+GGG | 0.657767 | 2_4:+6123054 | Msa0311260:CDS |
| GCATTAGCCATGATTGACGA+AGG | 0.659093 | 2_4:+6122753 | Msa0311260:CDS |
| ATTCCATTGAAGCTAGGTGA+TGG | 0.692555 | 2_4:+6121985 | Msa0311260:CDS |
| TAGGCAGGGGAAGATAGGAG+AGG | 0.698710 | 2_4:+6122707 | Msa0311260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAATACAACAACAAAA+AGG | - | chr2_4:6122161-6122180 | None:intergenic | 15.0% |
| !! | TAAATGATATATTTCACAAT+AGG | - | chr2_4:6122428-6122447 | None:intergenic | 15.0% |
| !! | AAAATAATACAACAACAAAA+AGG | - | chr2_4:6122161-6122180 | None:intergenic | 15.0% |
| !! | TAAATGATATATTTCACAAT+AGG | - | chr2_4:6122428-6122447 | None:intergenic | 15.0% |
| !!! | TTTTTTGTATCCTGTTTAAT+GGG | - | chr2_4:6122087-6122106 | None:intergenic | 20.0% |
| !! | ATTAAACAGGATACAAAAAA+GGG | + | chr2_4:6122087-6122106 | Msa0311260:CDS | 20.0% |
| !!! | TTGTTGTATTATTTTGTCTT+TGG | + | chr2_4:6122166-6122185 | Msa0311260:intron | 20.0% |
| !!! | TTTCTAGCTATAATATACAT+TGG | + | chr2_4:6122453-6122472 | Msa0311260:intron | 20.0% |
| !! | TATAATATACATTGGAACTA+TGG | + | chr2_4:6122461-6122480 | Msa0311260:CDS | 20.0% |
| !! | AACAGAATAAAGAATTCATT+AGG | - | chr2_4:6123158-6123177 | None:intergenic | 20.0% |
| !!! | TTTTTTGTATCCTGTTTAAT+GGG | - | chr2_4:6122087-6122106 | None:intergenic | 20.0% |
| !! | ATTAAACAGGATACAAAAAA+GGG | + | chr2_4:6122087-6122106 | Msa0311260:CDS | 20.0% |
| !!! | TTGTTGTATTATTTTGTCTT+TGG | + | chr2_4:6122166-6122185 | Msa0311260:intron | 20.0% |
| !!! | TTTCTAGCTATAATATACAT+TGG | + | chr2_4:6122453-6122472 | Msa0311260:intron | 20.0% |
| !! | TATAATATACATTGGAACTA+TGG | + | chr2_4:6122461-6122480 | Msa0311260:CDS | 20.0% |
| !! | AACAGAATAAAGAATTCATT+AGG | - | chr2_4:6123158-6123177 | None:intergenic | 20.0% |
| !!! | CTTTTTTGTATCCTGTTTAA+TGG | - | chr2_4:6122088-6122107 | None:intergenic | 25.0% |
| ! | CATTAAACAGGATACAAAAA+AGG | + | chr2_4:6122086-6122105 | Msa0311260:CDS | 25.0% |
| ! | ATTTCACAATAGGTTACATA+TGG | - | chr2_4:6122418-6122437 | None:intergenic | 25.0% |
| ! | AAGATATTGAGATGACATAA+TGG | - | chr2_4:6122608-6122627 | None:intergenic | 25.0% |
| !! | TACAGATTAACAGGAATTTT+AGG | - | chr2_4:6122660-6122679 | None:intergenic | 25.0% |
| ! | TAACGAAAGTTTCATTAAGA+TGG | + | chr2_4:6122916-6122935 | Msa0311260:intron | 25.0% |
| ! | ATTATCTACTGCAATGTTAA+TGG | + | chr2_4:6123284-6123303 | Msa0311260:intron | 25.0% |
| !!! | CAAACTTATTTTTTGTGAAC+AGG | + | chr2_4:6123340-6123359 | Msa0311260:intron | 25.0% |
| !!! | CTTTTTTGTATCCTGTTTAA+TGG | - | chr2_4:6122088-6122107 | None:intergenic | 25.0% |
| ! | CATTAAACAGGATACAAAAA+AGG | + | chr2_4:6122086-6122105 | Msa0311260:CDS | 25.0% |
| ! | ATTTCACAATAGGTTACATA+TGG | - | chr2_4:6122418-6122437 | None:intergenic | 25.0% |
| ! | AAGATATTGAGATGACATAA+TGG | - | chr2_4:6122608-6122627 | None:intergenic | 25.0% |
| !! | TACAGATTAACAGGAATTTT+AGG | - | chr2_4:6122660-6122679 | None:intergenic | 25.0% |
| ! | TAACGAAAGTTTCATTAAGA+TGG | + | chr2_4:6122916-6122935 | Msa0311260:intron | 25.0% |
| ! | ATTATCTACTGCAATGTTAA+TGG | + | chr2_4:6123284-6123303 | Msa0311260:intron | 25.0% |
| !!! | CAAACTTATTTTTTGTGAAC+AGG | + | chr2_4:6123340-6123359 | Msa0311260:intron | 25.0% |
| CAAGAGTTTGTCTTTATCAA+GGG | + | chr2_4:6122235-6122254 | Msa0311260:intron | 30.0% | |
| TATATTGACGTCAGTAAAGA+AGG | - | chr2_4:6122291-6122310 | None:intergenic | 30.0% | |
| !! | CTTCTTTTGAAAATTCTGCT+CGG | + | chr2_4:6122371-6122390 | Msa0311260:intron | 30.0% |
| AAAATTCTGCTCGGTTAATT+TGG | + | chr2_4:6122380-6122399 | Msa0311260:intron | 30.0% | |
| ATTCCATTACTAATGAGCAA+TGG | + | chr2_4:6122563-6122582 | Msa0311260:intron | 30.0% | |
| TCAACTACATACAGATTAAC+AGG | - | chr2_4:6122669-6122688 | None:intergenic | 30.0% | |
| ! | TAATCTGTATGTAGTTGATG+TGG | + | chr2_4:6122671-6122690 | Msa0311260:intron | 30.0% |
| TATAATCTTCCATTGTCTTC+AGG | + | chr2_4:6123001-6123020 | Msa0311260:intron | 30.0% | |
| ATAATCTTCCATTGTCTTCA+GGG | + | chr2_4:6123002-6123021 | Msa0311260:intron | 30.0% | |
| ACGACCTATAAATGATTCAA+GGG | - | chr2_4:6123216-6123235 | None:intergenic | 30.0% | |
| AACGACCTATAAATGATTCA+AGG | - | chr2_4:6123217-6123236 | None:intergenic | 30.0% | |
| CAAGAGTTTGTCTTTATCAA+GGG | + | chr2_4:6122235-6122254 | Msa0311260:intron | 30.0% | |
| TATATTGACGTCAGTAAAGA+AGG | - | chr2_4:6122291-6122310 | None:intergenic | 30.0% | |
| !! | CTTCTTTTGAAAATTCTGCT+CGG | + | chr2_4:6122371-6122390 | Msa0311260:intron | 30.0% |
| AAAATTCTGCTCGGTTAATT+TGG | + | chr2_4:6122380-6122399 | Msa0311260:intron | 30.0% | |
| ATTCCATTACTAATGAGCAA+TGG | + | chr2_4:6122563-6122582 | Msa0311260:intron | 30.0% | |
| TCAACTACATACAGATTAAC+AGG | - | chr2_4:6122669-6122688 | None:intergenic | 30.0% | |
| ! | TAATCTGTATGTAGTTGATG+TGG | + | chr2_4:6122671-6122690 | Msa0311260:intron | 30.0% |
| TATAATCTTCCATTGTCTTC+AGG | + | chr2_4:6123001-6123020 | Msa0311260:intron | 30.0% | |
| ATAATCTTCCATTGTCTTCA+GGG | + | chr2_4:6123002-6123021 | Msa0311260:intron | 30.0% | |
| ACGACCTATAAATGATTCAA+GGG | - | chr2_4:6123216-6123235 | None:intergenic | 30.0% | |
| AACGACCTATAAATGATTCA+AGG | - | chr2_4:6123217-6123236 | None:intergenic | 30.0% | |
| TTCAATGGAATATCATGCCA+GGG | - | chr2_4:6121976-6121995 | None:intergenic | 35.0% | |
| CATGATATTCCATTGAAGCT+AGG | + | chr2_4:6121979-6121998 | Msa0311260:CDS | 35.0% | |
| ! | ATCTTTGCACTGGATTCTTT+TGG | - | chr2_4:6122036-6122055 | None:intergenic | 35.0% |
| AAAAGAATCCAGTGCAAAGA+TGG | + | chr2_4:6122035-6122054 | Msa0311260:CDS | 35.0% | |
| ACAAACTCTTGGTTGGATTA+GGG | - | chr2_4:6122226-6122245 | None:intergenic | 35.0% | |
| GATAAAGACAAACTCTTGGT+TGG | - | chr2_4:6122233-6122252 | None:intergenic | 35.0% | |
| CCTTGATAAAGACAAACTCT+TGG | - | chr2_4:6122237-6122256 | None:intergenic | 35.0% | |
| CCAAGAGTTTGTCTTTATCA+AGG | + | chr2_4:6122234-6122253 | Msa0311260:intron | 35.0% | |
| ! | TCGGTTAATTTGGCAAAGAT+TGG | + | chr2_4:6122390-6122409 | Msa0311260:intron | 35.0% |
| ! | CTCATTAGTAATGGAATACC+TGG | - | chr2_4:6122560-6122579 | None:intergenic | 35.0% |
| CATCCATTGCTCATTAGTAA+TGG | - | chr2_4:6122569-6122588 | None:intergenic | 35.0% | |
| !! | TTGAGATGACATAATGGACA+AGG | - | chr2_4:6122602-6122621 | None:intergenic | 35.0% |
| AGCATAGACATCAAGTAACT+AGG | - | chr2_4:6122883-6122902 | None:intergenic | 35.0% | |
| TAGTTACTTGATGTCTATGC+TGG | + | chr2_4:6122882-6122901 | Msa0311260:intron | 35.0% | |
| AGAGACTATAAGATACCTGA+TGG | + | chr2_4:6123053-6123072 | Msa0311260:CDS | 35.0% | |
| GAGACTATAAGATACCTGAT+GGG | + | chr2_4:6123054-6123073 | Msa0311260:CDS | 35.0% | |
| ! | AAAGTACCTTATTTACTGCC+TGG | - | chr2_4:6123109-6123128 | None:intergenic | 35.0% |
| ACGTCCCTTGAATCATTTAT+AGG | + | chr2_4:6123209-6123228 | Msa0311260:intron | 35.0% | |
| ! | TTAATGGCCACATTTTGTCT+CGG | + | chr2_4:6123300-6123319 | Msa0311260:intron | 35.0% |
| AAAATAGCCGAGACAAAATG+TGG | - | chr2_4:6123310-6123329 | None:intergenic | 35.0% | |
| !! | TTTTGTCTCGGCTATTTTCA+TGG | + | chr2_4:6123312-6123331 | Msa0311260:intron | 35.0% |
| TTCAATGGAATATCATGCCA+GGG | - | chr2_4:6121976-6121995 | None:intergenic | 35.0% | |
| CATGATATTCCATTGAAGCT+AGG | + | chr2_4:6121979-6121998 | Msa0311260:CDS | 35.0% | |
| ! | ATCTTTGCACTGGATTCTTT+TGG | - | chr2_4:6122036-6122055 | None:intergenic | 35.0% |
| AAAAGAATCCAGTGCAAAGA+TGG | + | chr2_4:6122035-6122054 | Msa0311260:CDS | 35.0% | |
| ACAAACTCTTGGTTGGATTA+GGG | - | chr2_4:6122226-6122245 | None:intergenic | 35.0% | |
| GATAAAGACAAACTCTTGGT+TGG | - | chr2_4:6122233-6122252 | None:intergenic | 35.0% | |
| CCTTGATAAAGACAAACTCT+TGG | - | chr2_4:6122237-6122256 | None:intergenic | 35.0% | |
| CCAAGAGTTTGTCTTTATCA+AGG | + | chr2_4:6122234-6122253 | Msa0311260:intron | 35.0% | |
| ! | TCGGTTAATTTGGCAAAGAT+TGG | + | chr2_4:6122390-6122409 | Msa0311260:intron | 35.0% |
| ! | CTCATTAGTAATGGAATACC+TGG | - | chr2_4:6122560-6122579 | None:intergenic | 35.0% |
| CATCCATTGCTCATTAGTAA+TGG | - | chr2_4:6122569-6122588 | None:intergenic | 35.0% | |
| !! | TTGAGATGACATAATGGACA+AGG | - | chr2_4:6122602-6122621 | None:intergenic | 35.0% |
| AGCATAGACATCAAGTAACT+AGG | - | chr2_4:6122883-6122902 | None:intergenic | 35.0% | |
| TAGTTACTTGATGTCTATGC+TGG | + | chr2_4:6122882-6122901 | Msa0311260:intron | 35.0% | |
| AGAGACTATAAGATACCTGA+TGG | + | chr2_4:6123053-6123072 | Msa0311260:CDS | 35.0% | |
| GAGACTATAAGATACCTGAT+GGG | + | chr2_4:6123054-6123073 | Msa0311260:CDS | 35.0% | |
| ! | AAAGTACCTTATTTACTGCC+TGG | - | chr2_4:6123109-6123128 | None:intergenic | 35.0% |
| ACGTCCCTTGAATCATTTAT+AGG | + | chr2_4:6123209-6123228 | Msa0311260:intron | 35.0% | |
| ! | TTAATGGCCACATTTTGTCT+CGG | + | chr2_4:6123300-6123319 | Msa0311260:intron | 35.0% |
| AAAATAGCCGAGACAAAATG+TGG | - | chr2_4:6123310-6123329 | None:intergenic | 35.0% | |
| !! | TTTTGTCTCGGCTATTTTCA+TGG | + | chr2_4:6123312-6123331 | Msa0311260:intron | 35.0% |
| CTTCAATGGAATATCATGCC+AGG | - | chr2_4:6121977-6121996 | None:intergenic | 40.0% | |
| ATTCCATTGAAGCTAGGTGA+TGG | + | chr2_4:6121985-6122004 | Msa0311260:CDS | 40.0% | |
| TCCTGTTTAATGGGAGTGAA+AGG | - | chr2_4:6122078-6122097 | None:intergenic | 40.0% | |
| !! | AGCTTTGAAGTTGTCACTCA+CGG | - | chr2_4:6122129-6122148 | None:intergenic | 40.0% |
| ! | TGGATTAGGGAAATGGACTT+AGG | - | chr2_4:6122213-6122232 | None:intergenic | 40.0% |
| ! | TCTTGGTTGGATTAGGGAAA+TGG | - | chr2_4:6122220-6122239 | None:intergenic | 40.0% |
| GACAAACTCTTGGTTGGATT+AGG | - | chr2_4:6122227-6122246 | None:intergenic | 40.0% | |
| ! | ACTTCATGGTTTGCAAGAGA+TGG | - | chr2_4:6122512-6122531 | None:intergenic | 40.0% |
| CTTGCAAACCATGAAGTTGA+AGG | + | chr2_4:6122515-6122534 | Msa0311260:CDS | 40.0% | |
| CAAATGCTCCTTCAACTTCA+TGG | - | chr2_4:6122526-6122545 | None:intergenic | 40.0% | |
| !! | CATGAAGTTGAAGGAGCATT+TGG | + | chr2_4:6122524-6122543 | Msa0311260:CDS | 40.0% |
| GCATTTGGAGATAATGATCC+AGG | + | chr2_4:6122539-6122558 | Msa0311260:CDS | 40.0% | |
| !! | GATGACATAATGGACAAGGT+TGG | - | chr2_4:6122598-6122617 | None:intergenic | 40.0% |
| ! | GTAGTTGATGTGGTTGAGAT+CGG | + | chr2_4:6122681-6122700 | Msa0311260:intron | 40.0% |
| ATCATGGCTAATGCAGCTAA+GGG | - | chr2_4:6122747-6122766 | None:intergenic | 40.0% | |
| AATCATGGCTAATGCAGCTA+AGG | - | chr2_4:6122748-6122767 | None:intergenic | 40.0% | |
| AAGTTCTCCTTCGTCAATCA+TGG | - | chr2_4:6122763-6122782 | None:intergenic | 40.0% | |
| TTGACGAAGGAGAACTTGAT+TGG | + | chr2_4:6122766-6122785 | Msa0311260:CDS | 40.0% | |
| ! | TCGTTCACAAGTGAAGCTTT+TGG | - | chr2_4:6122819-6122838 | None:intergenic | 40.0% |
| AACTAGGTAACGAAGCTTAC+TGG | - | chr2_4:6122867-6122886 | None:intergenic | 40.0% | |
| TTCTTGATGCGATACTCTGT+TGG | + | chr2_4:6122948-6122967 | Msa0311260:intron | 40.0% | |
| AGGGAACCCTTATTGCAATT+AGG | + | chr2_4:6123021-6123040 | Msa0311260:intron | 40.0% | |
| GGGAACCCTTATTGCAATTA+GGG | + | chr2_4:6123022-6123041 | Msa0311260:intron | 40.0% | |
| CCAGTCCCTAATTGCAATAA+GGG | - | chr2_4:6123030-6123049 | None:intergenic | 40.0% | |
| ACCAGTCCCTAATTGCAATA+AGG | - | chr2_4:6123031-6123050 | None:intergenic | 40.0% | |
| CCAAGACCAAATCTATTAGC+AGG | - | chr2_4:6123083-6123102 | None:intergenic | 40.0% | |
| ! | CCTGCTAATAGATTTGGTCT+TGG | + | chr2_4:6123080-6123099 | Msa0311260:CDS | 40.0% |
| CTTCAATGGAATATCATGCC+AGG | - | chr2_4:6121977-6121996 | None:intergenic | 40.0% | |
| ATTCCATTGAAGCTAGGTGA+TGG | + | chr2_4:6121985-6122004 | Msa0311260:CDS | 40.0% | |
| TCCTGTTTAATGGGAGTGAA+AGG | - | chr2_4:6122078-6122097 | None:intergenic | 40.0% | |
| !! | AGCTTTGAAGTTGTCACTCA+CGG | - | chr2_4:6122129-6122148 | None:intergenic | 40.0% |
| ! | TGGATTAGGGAAATGGACTT+AGG | - | chr2_4:6122213-6122232 | None:intergenic | 40.0% |
| ! | TCTTGGTTGGATTAGGGAAA+TGG | - | chr2_4:6122220-6122239 | None:intergenic | 40.0% |
| GACAAACTCTTGGTTGGATT+AGG | - | chr2_4:6122227-6122246 | None:intergenic | 40.0% | |
| ! | ACTTCATGGTTTGCAAGAGA+TGG | - | chr2_4:6122512-6122531 | None:intergenic | 40.0% |
| CTTGCAAACCATGAAGTTGA+AGG | + | chr2_4:6122515-6122534 | Msa0311260:CDS | 40.0% | |
| CAAATGCTCCTTCAACTTCA+TGG | - | chr2_4:6122526-6122545 | None:intergenic | 40.0% | |
| !! | CATGAAGTTGAAGGAGCATT+TGG | + | chr2_4:6122524-6122543 | Msa0311260:CDS | 40.0% |
| GCATTTGGAGATAATGATCC+AGG | + | chr2_4:6122539-6122558 | Msa0311260:CDS | 40.0% | |
| !! | GATGACATAATGGACAAGGT+TGG | - | chr2_4:6122598-6122617 | None:intergenic | 40.0% |
| ! | GTAGTTGATGTGGTTGAGAT+CGG | + | chr2_4:6122681-6122700 | Msa0311260:intron | 40.0% |
| ATCATGGCTAATGCAGCTAA+GGG | - | chr2_4:6122747-6122766 | None:intergenic | 40.0% | |
| AATCATGGCTAATGCAGCTA+AGG | - | chr2_4:6122748-6122767 | None:intergenic | 40.0% | |
| AAGTTCTCCTTCGTCAATCA+TGG | - | chr2_4:6122763-6122782 | None:intergenic | 40.0% | |
| TTGACGAAGGAGAACTTGAT+TGG | + | chr2_4:6122766-6122785 | Msa0311260:CDS | 40.0% | |
| ! | TCGTTCACAAGTGAAGCTTT+TGG | - | chr2_4:6122819-6122838 | None:intergenic | 40.0% |
| AACTAGGTAACGAAGCTTAC+TGG | - | chr2_4:6122867-6122886 | None:intergenic | 40.0% | |
| TTCTTGATGCGATACTCTGT+TGG | + | chr2_4:6122948-6122967 | Msa0311260:intron | 40.0% | |
| AGGGAACCCTTATTGCAATT+AGG | + | chr2_4:6123021-6123040 | Msa0311260:intron | 40.0% | |
| GGGAACCCTTATTGCAATTA+GGG | + | chr2_4:6123022-6123041 | Msa0311260:intron | 40.0% | |
| CCAGTCCCTAATTGCAATAA+GGG | - | chr2_4:6123030-6123049 | None:intergenic | 40.0% | |
| ACCAGTCCCTAATTGCAATA+AGG | - | chr2_4:6123031-6123050 | None:intergenic | 40.0% | |
| CCAAGACCAAATCTATTAGC+AGG | - | chr2_4:6123083-6123102 | None:intergenic | 40.0% | |
| ! | CCTGCTAATAGATTTGGTCT+TGG | + | chr2_4:6123080-6123099 | Msa0311260:CDS | 40.0% |
| ACACCATCACCTAGCTTCAA+TGG | - | chr2_4:6121991-6122010 | None:intergenic | 45.0% | |
| AGAATCCAGTGCAAAGATGG+AGG | + | chr2_4:6122038-6122057 | Msa0311260:CDS | 45.0% | |
| GCCTTTCACTCCCATTAAAC+AGG | + | chr2_4:6122074-6122093 | Msa0311260:CDS | 45.0% | |
| !! | GCTTTGAAGTTGTCACTCAC+GGG | - | chr2_4:6122128-6122147 | None:intergenic | 45.0% |
| ATGGCCTACTTCCACAAACA+TGG | + | chr2_4:6122480-6122499 | Msa0311260:CDS | 45.0% | |
| TGGCCTACTTCCACAAACAT+GGG | + | chr2_4:6122481-6122500 | Msa0311260:CDS | 45.0% | |
| CTTCCCATGTTTGTGGAAGT+AGG | - | chr2_4:6122487-6122506 | None:intergenic | 45.0% | |
| GATGGATCTTCCCATGTTTG+TGG | - | chr2_4:6122494-6122513 | None:intergenic | 45.0% | |
| GCATTAGCCATGATTGACGA+AGG | + | chr2_4:6122753-6122772 | Msa0311260:CDS | 45.0% | |
| TAAGGGTTCCCTGAAGACAA+TGG | - | chr2_4:6123013-6123032 | None:intergenic | 45.0% | |
| CCCTTATTGCAATTAGGGAC+TGG | + | chr2_4:6123027-6123046 | Msa0311260:CDS | 45.0% | |
| GGGAAGCCTGCTAATAGATT+TGG | + | chr2_4:6123074-6123093 | Msa0311260:CDS | 45.0% | |
| !! | TAGATTTGGTCTTGGCAACC+AGG | + | chr2_4:6123088-6123107 | Msa0311260:CDS | 45.0% |
| TGGCAACCAGGCAGTAAATA+AGG | + | chr2_4:6123100-6123119 | Msa0311260:CDS | 45.0% | |
| TGAACAGGATTACGCGCTTA+AGG | + | chr2_4:6123355-6123374 | Msa0311260:intron | 45.0% | |
| AAGTTTACTCCACGACTCGT+TGG | - | chr2_4:6123393-6123412 | None:intergenic | 45.0% | |
| GTGAAGAGATCAATTCCTGC+AGG | + | chr2_4:6123413-6123432 | Msa0311260:CDS | 45.0% | |
| ACACCATCACCTAGCTTCAA+TGG | - | chr2_4:6121991-6122010 | None:intergenic | 45.0% | |
| AGAATCCAGTGCAAAGATGG+AGG | + | chr2_4:6122038-6122057 | Msa0311260:CDS | 45.0% | |
| GCCTTTCACTCCCATTAAAC+AGG | + | chr2_4:6122074-6122093 | Msa0311260:CDS | 45.0% | |
| !! | GCTTTGAAGTTGTCACTCAC+GGG | - | chr2_4:6122128-6122147 | None:intergenic | 45.0% |
| ATGGCCTACTTCCACAAACA+TGG | + | chr2_4:6122480-6122499 | Msa0311260:CDS | 45.0% | |
| TGGCCTACTTCCACAAACAT+GGG | + | chr2_4:6122481-6122500 | Msa0311260:CDS | 45.0% | |
| CTTCCCATGTTTGTGGAAGT+AGG | - | chr2_4:6122487-6122506 | None:intergenic | 45.0% | |
| GATGGATCTTCCCATGTTTG+TGG | - | chr2_4:6122494-6122513 | None:intergenic | 45.0% | |
| GCATTAGCCATGATTGACGA+AGG | + | chr2_4:6122753-6122772 | Msa0311260:CDS | 45.0% | |
| TAAGGGTTCCCTGAAGACAA+TGG | - | chr2_4:6123013-6123032 | None:intergenic | 45.0% | |
| CCCTTATTGCAATTAGGGAC+TGG | + | chr2_4:6123027-6123046 | Msa0311260:CDS | 45.0% | |
| GGGAAGCCTGCTAATAGATT+TGG | + | chr2_4:6123074-6123093 | Msa0311260:CDS | 45.0% | |
| !! | TAGATTTGGTCTTGGCAACC+AGG | + | chr2_4:6123088-6123107 | Msa0311260:CDS | 45.0% |
| TGGCAACCAGGCAGTAAATA+AGG | + | chr2_4:6123100-6123119 | Msa0311260:CDS | 45.0% | |
| TGAACAGGATTACGCGCTTA+AGG | + | chr2_4:6123355-6123374 | Msa0311260:intron | 45.0% | |
| AAGTTTACTCCACGACTCGT+TGG | - | chr2_4:6123393-6123412 | None:intergenic | 45.0% | |
| GTGAAGAGATCAATTCCTGC+AGG | + | chr2_4:6123413-6123432 | Msa0311260:CDS | 45.0% | |
| ATGTGGTTGAGATCGGCGAT+AGG | + | chr2_4:6122688-6122707 | Msa0311260:CDS | 50.0% | |
| CTATTAGCAGGCTTCCCATC+AGG | - | chr2_4:6123071-6123090 | None:intergenic | 50.0% | |
| ATGTGGTTGAGATCGGCGAT+AGG | + | chr2_4:6122688-6122707 | Msa0311260:CDS | 50.0% | |
| CTATTAGCAGGCTTCCCATC+AGG | - | chr2_4:6123071-6123090 | None:intergenic | 50.0% | |
| GGCAACCTCCATCTTTGCAC+TGG | - | chr2_4:6122046-6122065 | None:intergenic | 55.0% | |
| GTTGAGATCGGCGATAGGCA+GGG | + | chr2_4:6122693-6122712 | Msa0311260:CDS | 55.0% | |
| TTGAGATCGGCGATAGGCAG+GGG | + | chr2_4:6122694-6122713 | Msa0311260:CDS | 55.0% | |
| TAGGCAGGGGAAGATAGGAG+AGG | + | chr2_4:6122707-6122726 | Msa0311260:CDS | 55.0% | |
| TCACAGAGACCAACGAGTCG+TGG | + | chr2_4:6123381-6123400 | Msa0311260:CDS | 55.0% | |
| ACAAGTGACAGCTCTCCTGC+AGG | - | chr2_4:6123431-6123450 | None:intergenic | 55.0% | |
| GGCAACCTCCATCTTTGCAC+TGG | - | chr2_4:6122046-6122065 | None:intergenic | 55.0% | |
| GTTGAGATCGGCGATAGGCA+GGG | + | chr2_4:6122693-6122712 | Msa0311260:CDS | 55.0% | |
| TTGAGATCGGCGATAGGCAG+GGG | + | chr2_4:6122694-6122713 | Msa0311260:CDS | 55.0% | |
| TAGGCAGGGGAAGATAGGAG+AGG | + | chr2_4:6122707-6122726 | Msa0311260:CDS | 55.0% | |
| TCACAGAGACCAACGAGTCG+TGG | + | chr2_4:6123381-6123400 | Msa0311260:CDS | 55.0% | |
| ACAAGTGACAGCTCTCCTGC+AGG | - | chr2_4:6123431-6123450 | None:intergenic | 55.0% | |
| GGGAGTGAAAGGCTCGTCAG+TGG | - | chr2_4:6122067-6122086 | None:intergenic | 60.0% | |
| GGTTGAGATCGGCGATAGGC+AGG | + | chr2_4:6122692-6122711 | Msa0311260:CDS | 60.0% | |
| GGCGATAGGCAGGGGAAGAT+AGG | + | chr2_4:6122702-6122721 | Msa0311260:CDS | 60.0% | |
| GGGAGTGAAAGGCTCGTCAG+TGG | - | chr2_4:6122067-6122086 | None:intergenic | 60.0% | |
| GGTTGAGATCGGCGATAGGC+AGG | + | chr2_4:6122692-6122711 | Msa0311260:CDS | 60.0% | |
| GGCGATAGGCAGGGGAAGAT+AGG | + | chr2_4:6122702-6122721 | Msa0311260:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 6121967 | 6123454 | 6121967 | ID=Msa0311260;Name=Msa0311260 |
| chr2_4 | mRNA | 6121967 | 6123454 | 6121967 | ID=Msa0311260-mRNA-1;Parent=Msa0311260;Name=Msa0311260-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0|0|1|1|1|5|0|211 |
| chr2_4 | exon | 6121967 | 6122127 | 6121967 | ID=Msa0311260-mRNA-1:exon:2310;Parent=Msa0311260-mRNA-1 |
| chr2_4 | exon | 6122460 | 6122560 | 6122460 | ID=Msa0311260-mRNA-1:exon:2311;Parent=Msa0311260-mRNA-1 |
| chr2_4 | exon | 6122685 | 6122866 | 6122685 | ID=Msa0311260-mRNA-1:exon:2312;Parent=Msa0311260-mRNA-1 |
| chr2_4 | exon | 6123023 | 6123121 | 6123023 | ID=Msa0311260-mRNA-1:exon:2313;Parent=Msa0311260-mRNA-1 |
| chr2_4 | exon | 6123362 | 6123454 | 6123362 | ID=Msa0311260-mRNA-1:exon:2314;Parent=Msa0311260-mRNA-1 |
| chr2_4 | CDS | 6121967 | 6122127 | 6121967 | ID=Msa0311260-mRNA-1:cds;Parent=Msa0311260-mRNA-1 |
| chr2_4 | CDS | 6122460 | 6122560 | 6122460 | ID=Msa0311260-mRNA-1:cds;Parent=Msa0311260-mRNA-1 |
| chr2_4 | CDS | 6122685 | 6122866 | 6122685 | ID=Msa0311260-mRNA-1:cds;Parent=Msa0311260-mRNA-1 |
| chr2_4 | CDS | 6123023 | 6123121 | 6123023 | ID=Msa0311260-mRNA-1:cds;Parent=Msa0311260-mRNA-1 |
| chr2_4 | CDS | 6123362 | 6123454 | 6123362 | ID=Msa0311260-mRNA-1:cds;Parent=Msa0311260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
