Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0190560 | XP_003593347.1 | 95.122 | 410 | 10 | 3 | 1 | 410 | 1 | 400 | 0.0 | 802 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0190560 | sp|P93732|PIP_ARATH | 84.244 | 311 | 48 | 1 | 93 | 402 | 66 | 376 | 0.0 | 566 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0190560 | G7IFC0 | 95.122 | 410 | 10 | 3 | 1 | 410 | 1 | 400 | 0.0 | 802 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0190560 | Msa1343160 | 0.907164 | 6.806810e-81 | -8.615850e-47 |
| Msa0190560 | Msa1343190 | 0.871087 | 8.925202e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0190560 | MtrunA17_Chr2g0280211 | 95.122 | 410 | 10 | 3 | 1 | 410 | 1 | 400 | 0.0 | 802 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0190560 | AT2G14260.1 | 84.244 | 311 | 48 | 1 | 93 | 402 | 66 | 376 | 0.0 | 566 |
| Msa0190560 | AT2G14260.3 | 84.244 | 311 | 48 | 1 | 93 | 402 | 15 | 325 | 0.0 | 566 |
| Msa0190560 | AT2G14260.2 | 84.244 | 311 | 48 | 1 | 93 | 402 | 15 | 325 | 0.0 | 566 |
| Msa0190560 | AT2G14260.4 | 84.231 | 260 | 40 | 1 | 93 | 351 | 66 | 325 | 1.86e-165 | 469 |
Find 109 sgRNAs with CRISPR-Local
Find 333 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATCTCTTTCTTCCTTAAA+AGG | 0.212696 | 2_1:-6042043 | None:intergenic |
| TAATATAATATACAGGTATT+TGG | 0.271484 | 2_1:+6041761 | Msa0190560:intron |
| ACCTCCTACTACTTCTTTGA+TGG | 0.279710 | 2_1:+6040489 | Msa0190560:CDS |
| AACATGCTACACACCTTGTC+TGG | 0.280322 | 2_1:-6041830 | None:intergenic |
| TAGACGGAGTTGATAAAATA+AGG | 0.294530 | 2_1:+6044134 | Msa0190560:CDS |
| GTGGTATAAGGTTCAATATC+TGG | 0.295560 | 2_1:-6040556 | None:intergenic |
| AAAATTACTCCTTGAATATA+AGG | 0.299469 | 2_1:+6044845 | Msa0190560:three_prime_UTR |
| GTTGTTGTGAGGTGAAAATT+AGG | 0.314778 | 2_1:-6040255 | None:intergenic |
| TGAAAGATGACCTGCCATTC+TGG | 0.315372 | 2_1:-6041667 | None:intergenic |
| GGGGAACTTCCCCGAGTAAT+AGG | 0.329132 | 2_1:+6041423 | Msa0190560:CDS |
| CAAAACCGAAAAGCAATAAT+AGG | 0.346939 | 2_1:+6040141 | None:intergenic |
| AGTATGATTCGGTAAAATTC+AGG | 0.352593 | 2_1:-6041458 | None:intergenic |
| TAAGGAAGAAAGAGATTGAT+TGG | 0.356029 | 2_1:+6042048 | Msa0190560:CDS |
| AGCAGCTATGCCTGGTTCAT+TGG | 0.356957 | 2_1:-6044518 | None:intergenic |
| AGATCCCAGGCTGACATCAT+AGG | 0.366457 | 2_1:-6044273 | None:intergenic |
| AGGTTACTGGCATCGTCCTC+AGG | 0.380001 | 2_1:+6042012 | Msa0190560:intron |
| AGCAGTCATCATTTCCCATT+TGG | 0.384899 | 2_1:-6043055 | None:intergenic |
| AAAACAAAATCAAGAATAAA+GGG | 0.386373 | 2_1:+6044569 | Msa0190560:CDS |
| TCAGCTTTATGCTGGTGGTT+TGG | 0.388346 | 2_1:+6044770 | Msa0190560:three_prime_UTR |
| CCGAATCATACTATTTGATC+AGG | 0.399067 | 2_1:+6041469 | Msa0190560:CDS |
| CCGCTAGAGCATGGACCAAA+TGG | 0.402654 | 2_1:+6043040 | Msa0190560:CDS |
| TTAATAACAAAGAATGAAGT+TGG | 0.411395 | 2_1:+6040171 | Msa0190560:exon |
| CAGATCTTCACACTATCTAC+TGG | 0.413115 | 2_1:+6040596 | Msa0190560:CDS |
| ATCCCTTGTTGACGAAATAG+TGG | 0.419846 | 2_1:-6044087 | None:intergenic |
| TACAGGTATTTGGTGGATCA+TGG | 0.425085 | 2_1:+6041771 | Msa0190560:intron |
| ACTATCTACTGGGAGCAATC+TGG | 0.425472 | 2_1:+6040607 | Msa0190560:CDS |
| GCTGCCCTATGATGTCAGCC+TGG | 0.426579 | 2_1:+6044268 | Msa0190560:CDS |
| CAGAGATCTTATTCCAGAAA+AGG | 0.427576 | 2_1:+6042488 | Msa0190560:CDS |
| GTAGTATTAGTTGTTGAGAA+TGG | 0.429175 | 2_1:-6040214 | None:intergenic |
| TCTCTTTACCAGAGAGGTGC+GGG | 0.441056 | 2_1:+6041556 | Msa0190560:intron |
| CCACCAGCATAAAGCTGAGC+TGG | 0.451180 | 2_1:-6044765 | None:intergenic |
| TTCTATTGTGACAATGATGA+AGG | 0.451250 | 2_1:-6044714 | None:intergenic |
| ATTTGGTTGCCTTATATTCA+AGG | 0.453747 | 2_1:-6044854 | None:intergenic |
| ACACCTTGTCTGGGTGAGAT+TGG | 0.456816 | 2_1:-6041820 | None:intergenic |
| TTCTTTGATGGCTTCACAAA+AGG | 0.457949 | 2_1:+6040501 | Msa0190560:CDS |
| CGCTAGAGCATGGACCAAAT+GGG | 0.461856 | 2_1:+6043041 | Msa0190560:CDS |
| ATATGCAGTAAGAAAGAACT+TGG | 0.474476 | 2_1:+6040411 | Msa0190560:intron |
| CCTGATCAAATAGTATGATT+CGG | 0.483407 | 2_1:-6041469 | None:intergenic |
| CTACATGGAGGCCCTGGAGG+GGG | 0.488526 | 2_1:+6041404 | Msa0190560:CDS |
| GATATTGAACCTTATACCAC+TGG | 0.494227 | 2_1:+6040559 | Msa0190560:CDS |
| ACAGGTATTTGGTGGATCAT+GGG | 0.494915 | 2_1:+6041772 | Msa0190560:intron |
| TAATAACAAAGAATGAAGTT+GGG | 0.495195 | 2_1:+6040172 | Msa0190560:exon |
| CCAGCTCAGCTTTATGCTGG+TGG | 0.497912 | 2_1:+6044765 | Msa0190560:three_prime_UTR |
| ATACAGGTGGTTTCAGATGC+AGG | 0.499919 | 2_1:+6044487 | Msa0190560:intron |
| TTCCTACATGGAGGCCCTGG+AGG | 0.504186 | 2_1:+6041401 | Msa0190560:CDS |
| ATCCCAGCTCAGCTTTATGC+TGG | 0.504560 | 2_1:+6044762 | Msa0190560:three_prime_UTR |
| TTGTTGTGAGGTGAAAATTA+GGG | 0.507478 | 2_1:-6040254 | None:intergenic |
| AAACAAAAGGTGCAGTTGGT+TGG | 0.509162 | 2_1:+6044619 | Msa0190560:three_prime_UTR |
| CAGCCAGTTGTATTCCTACA+TGG | 0.513350 | 2_1:+6041389 | Msa0190560:intron |
| CCTCCATGTAGGAATACAAC+TGG | 0.513574 | 2_1:-6041392 | None:intergenic |
| TCTGATTCATTCTTGTTAGA+CGG | 0.517803 | 2_1:+6044118 | Msa0190560:CDS |
| GTATTCCTACATGGAGGCCC+TGG | 0.518972 | 2_1:+6041398 | Msa0190560:CDS |
| CTGCCCTATGATGTCAGCCT+GGG | 0.519055 | 2_1:+6044269 | Msa0190560:CDS |
| TTTGCAGATTCCAGAATGGC+AGG | 0.525461 | 2_1:+6041657 | Msa0190560:CDS |
| AATGAAGATACCGTCAAAAG+AGG | 0.525628 | 2_1:+6043090 | Msa0190560:CDS |
| AGCTATGCCTGGTTCATTGG+CGG | 0.526445 | 2_1:-6044515 | None:intergenic |
| ACAAGTTCAGCAGCTATGCC+TGG | 0.527402 | 2_1:-6044526 | None:intergenic |
| GAAGCCATCAAAGAAGTAGT+AGG | 0.528019 | 2_1:-6040493 | None:intergenic |
| TATAATATACAGGTATTTGG+TGG | 0.536899 | 2_1:+6041764 | Msa0190560:intron |
| TGGTATAAGGTTCAATATCT+GGG | 0.538042 | 2_1:-6040555 | None:intergenic |
| AACATTTGCAGATTCCAGAA+TGG | 0.539684 | 2_1:+6041653 | Msa0190560:CDS |
| GATCCCAGGCTGACATCATA+GGG | 0.540983 | 2_1:-6044272 | None:intergenic |
| TCCTACATGGAGGCCCTGGA+GGG | 0.541912 | 2_1:+6041402 | Msa0190560:CDS |
| CTTACCCGAAAATCTGCCTC+TGG | 0.542931 | 2_1:-6044309 | None:intergenic |
| GGACATTCCGCCAATGAACC+AGG | 0.545853 | 2_1:+6044508 | Msa0190560:CDS |
| CTCTGATGACATCGAAACTC+AGG | 0.546649 | 2_1:+6042551 | Msa0190560:CDS |
| GGGTACAAATTTGTGTTGAC+TGG | 0.549973 | 2_1:-6040535 | None:intergenic |
| AGTATGCTGCCGCTAGAGCA+TGG | 0.551887 | 2_1:+6043031 | Msa0190560:intron |
| TCTGGAATAAGATCTCTGAA+TGG | 0.552392 | 2_1:-6042483 | None:intergenic |
| GGTTACTGGCATCGTCCTCA+GGG | 0.553143 | 2_1:+6042013 | Msa0190560:intron |
| ACATGCTACACACCTTGTCT+GGG | 0.557071 | 2_1:-6041829 | None:intergenic |
| CCTACATGGAGGCCCTGGAG+GGG | 0.561466 | 2_1:+6041403 | Msa0190560:CDS |
| AGGCATAGCTGCTGAACTTG+TGG | 0.566543 | 2_1:+6044528 | Msa0190560:CDS |
| CACCAGCATAAAGCTGAGCT+GGG | 0.575185 | 2_1:-6044764 | None:intergenic |
| CCCCTCCAGGGCCTCCATGT+AGG | 0.577239 | 2_1:-6041403 | None:intergenic |
| AAACCACTATTTCGTCAACA+AGG | 0.580929 | 2_1:+6044084 | Msa0190560:CDS |
| CAAGTACTCACATGGCCAGT+GGG | 0.590555 | 2_1:-6040634 | None:intergenic |
| TTTCCTTGCAGACACAAGGA+AGG | 0.592869 | 2_1:-6044659 | None:intergenic |
| GTGATTTACCTGCACGATTG+TGG | 0.594189 | 2_1:-6044167 | None:intergenic |
| CCACGCTTTATGAAGATCCC+AGG | 0.594872 | 2_1:-6044286 | None:intergenic |
| CAGGTATTTGGTGGATCATG+GGG | 0.595807 | 2_1:+6041773 | Msa0190560:intron |
| TATCGACACCACAATCGTGC+AGG | 0.597111 | 2_1:+6044159 | Msa0190560:CDS |
| AACCACTATTTCGTCAACAA+GGG | 0.605554 | 2_1:+6044085 | Msa0190560:CDS |
| TGTTATGCTCTAAGCAAGCA+TGG | 0.608642 | 2_1:-6041591 | None:intergenic |
| AGATCTTCACACTATCTACT+GGG | 0.609166 | 2_1:+6040597 | Msa0190560:CDS |
| GTTATGCTCTAAGCAAGCAT+GGG | 0.610694 | 2_1:-6041590 | None:intergenic |
| GCCATCAAAGAAGTAGTAGG+AGG | 0.612123 | 2_1:-6040490 | None:intergenic |
| TTCTCTTTACCAGAGAGGTG+CGG | 0.613919 | 2_1:+6041555 | Msa0190560:intron |
| GAGCAATCTGGAAATCCCAC+TGG | 0.617071 | 2_1:+6040619 | Msa0190560:CDS |
| AAAATAGTCTAATACCATCA+GGG | 0.617415 | 2_1:-6042100 | None:intergenic |
| AAGTAGTAGGAGGTACTGAG+TGG | 0.619050 | 2_1:-6040480 | None:intergenic |
| TTGTAGTAGTTGTTGTTGTG+AGG | 0.628510 | 2_1:-6040266 | None:intergenic |
| CTTATTCCAGAAAAGGAGAG+AGG | 0.629277 | 2_1:+6042495 | Msa0190560:CDS |
| CTCTTTACCAGAGAGGTGCG+GGG | 0.631774 | 2_1:+6041557 | Msa0190560:intron |
| CCATTTGGTCCATGCTCTAG+CGG | 0.635703 | 2_1:-6043040 | None:intergenic |
| CAGCCAATCTCACCCAGACA+AGG | 0.636145 | 2_1:+6041817 | Msa0190560:CDS |
| ATAAAGGGGACTAAAGTGAG+TGG | 0.641202 | 2_1:+6044584 | Msa0190560:exon |
| AAACAAAATCAAGAATAAAG+GGG | 0.642276 | 2_1:+6044570 | Msa0190560:CDS |
| GCTTAGAGCATAACACCACA+TGG | 0.643086 | 2_1:+6041599 | Msa0190560:CDS |
| ACAAGTACTCACATGGCCAG+TGG | 0.644818 | 2_1:-6040635 | None:intergenic |
| CCTGGGATCTTCATAAAGCG+TGG | 0.651742 | 2_1:+6044286 | Msa0190560:CDS |
| TCTTCATAAAGCGTGGCCAG+AGG | 0.656424 | 2_1:+6044293 | Msa0190560:CDS |
| GCTGCTGCAATATACCCTGA+TGG | 0.658878 | 2_1:+6042086 | Msa0190560:CDS |
| TTATGCTCTAAGCAAGCATG+GGG | 0.676961 | 2_1:-6041589 | None:intergenic |
| CCAGTTGTATTCCTACATGG+AGG | 0.687512 | 2_1:+6041392 | Msa0190560:CDS |
| GTCATCAATAAGGTCCCATG+TGG | 0.703571 | 2_1:-6041614 | None:intergenic |
| CTTAGAGCATAACACCACAT+GGG | 0.720902 | 2_1:+6041600 | Msa0190560:CDS |
| GTTACTGGCATCGTCCTCAG+GGG | 0.725237 | 2_1:+6042014 | Msa0190560:CDS |
| TTAAAAGGAAGATTCCCCTG+AGG | 0.766974 | 2_1:-6042028 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTATTATTTTGTTACA+AGG | + | chr2_1:6041992-6042011 | Msa0190560:intron | 10.0% |
| !!! | AAATAACTTTACATTTTAAA+AGG | - | chr2_1:6042181-6042200 | None:intergenic | 10.0% |
| !!! | ATTTTTTTCTTTTTATTTGA+GGG | + | chr2_1:6042909-6042928 | Msa0190560:intron | 10.0% |
| !!! | TTTGAAATTTCATTTATGTT+AGG | + | chr2_1:6040850-6040869 | Msa0190560:intron | 15.0% |
| !! | TTGAAATTTCATTTATGTTA+GGG | + | chr2_1:6040851-6040870 | Msa0190560:intron | 15.0% |
| !!! | TTGTTATTAAAAACTTCAAA+TGG | - | chr2_1:6040925-6040944 | None:intergenic | 15.0% |
| !! | AATAAAATGCATAAAATCAA+GGG | - | chr2_1:6041319-6041338 | None:intergenic | 15.0% |
| !!! | ATTTTAAGATTCTTATGTAA+TGG | + | chr2_1:6041717-6041736 | Msa0190560:intron | 15.0% |
| !! | AACCATATAATATAATATAC+AGG | + | chr2_1:6041754-6041773 | Msa0190560:intron | 15.0% |
| !! | TACCTGTATATTATATTATA+TGG | - | chr2_1:6041759-6041778 | None:intergenic | 15.0% |
| !! | TAATATAATATACAGGTATT+TGG | + | chr2_1:6041761-6041780 | Msa0190560:intron | 15.0% |
| !!! | GTTTTATATAATGTAAAAGA+AGG | - | chr2_1:6041869-6041888 | None:intergenic | 15.0% |
| !!! | ATTATTTTTTGTTGTTAGTT+TGG | + | chr2_1:6042331-6042350 | Msa0190560:intron | 15.0% |
| !!! | GATTTTTTTCTTTTTATTTG+AGG | + | chr2_1:6042908-6042927 | Msa0190560:intron | 15.0% |
| !!! | TTTTTTTCTTTTTATTTGAG+GGG | + | chr2_1:6042910-6042929 | Msa0190560:intron | 15.0% |
| !! | TCTTTGTTAAAAATGTAAAA+AGG | + | chr2_1:6042954-6042973 | Msa0190560:intron | 15.0% |
| !!! | TAGACTTGATATTTTAAAAA+AGG | - | chr2_1:6043957-6043976 | None:intergenic | 15.0% |
| !! | TCTCAATTATAAATTATGAA+GGG | - | chr2_1:6043989-6044008 | None:intergenic | 15.0% |
| !! | ATCTCAATTATAAATTATGA+AGG | - | chr2_1:6043990-6044009 | None:intergenic | 15.0% |
| !! | AAAAACAAAATCAAGAATAA+AGG | + | chr2_1:6044568-6044587 | Msa0190560:CDS | 15.0% |
| !! | AAAACAAAATCAAGAATAAA+GGG | + | chr2_1:6044569-6044588 | Msa0190560:CDS | 15.0% |
| !!! | TTTTTCCTATTATTGCTTTT+CGG | - | chr2_1:6040149-6040168 | None:intergenic | 20.0% |
| !! | TTAATAACAAAGAATGAAGT+TGG | + | chr2_1:6040171-6040190 | Msa0190560:exon | 20.0% |
| !! | TAATAACAAAGAATGAAGTT+GGG | + | chr2_1:6040172-6040191 | Msa0190560:exon | 20.0% |
| !!! | TATTTTCAACACTAAATTGA+TGG | - | chr2_1:6040677-6040696 | None:intergenic | 20.0% |
| !!! | AATGGATGATTTTGAATTTT+AGG | - | chr2_1:6040700-6040719 | None:intergenic | 20.0% |
| !! | TTAATTGAATGTAATCACAT+GGG | - | chr2_1:6040788-6040807 | None:intergenic | 20.0% |
| !! | ATTAATTGAATGTAATCACA+TGG | - | chr2_1:6040789-6040808 | None:intergenic | 20.0% |
| !! | AAATTATTAATAGACACGTT+GGG | + | chr2_1:6040820-6040839 | Msa0190560:intron | 20.0% |
| !!! | CTTTTCTTGATTTTTATCTA+TGG | + | chr2_1:6040954-6040973 | Msa0190560:intron | 20.0% |
| !!! | TATATATTGATTGATGAAAC+TGG | + | chr2_1:6040993-6041012 | Msa0190560:intron | 20.0% |
| !! | ATATATCAATTCCAATAGAA+TGG | - | chr2_1:6041141-6041160 | None:intergenic | 20.0% |
| !! | GAATAAAATGCATAAAATCA+AGG | - | chr2_1:6041320-6041339 | None:intergenic | 20.0% |
| !!! | TAATTTTATAAACACTTTCC+TGG | + | chr2_1:6041366-6041385 | Msa0190560:intron | 20.0% |
| !!! | ATTTTTCAATGTCATCAATA+AGG | - | chr2_1:6041627-6041646 | None:intergenic | 20.0% |
| !! | AGAATCTTAAAATGTATGTA+TGG | - | chr2_1:6041710-6041729 | None:intergenic | 20.0% |
| !!! | AACTTTACATTTTAAAAGGA+AGG | - | chr2_1:6042177-6042196 | None:intergenic | 20.0% |
| !!! | GAACTAAAATTATTTTCATG+AGG | + | chr2_1:6042265-6042284 | Msa0190560:intron | 20.0% |
| !! | AAAAAAATCATGACTTTAAG+TGG | + | chr2_1:6042422-6042441 | Msa0190560:intron | 20.0% |
| !! | TATAGTTGAAGATAATTGAA+CGG | + | chr2_1:6042719-6042738 | Msa0190560:intron | 20.0% |
| !! | CCATCATGTAAAAATTAAAA+TGG | - | chr2_1:6042889-6042908 | None:intergenic | 20.0% |
| !!! | CCATTTTAATTTTTACATGA+TGG | + | chr2_1:6042886-6042905 | Msa0190560:intron | 20.0% |
| !!! | TACATTTTTAACAAAGAGAT+TGG | - | chr2_1:6042951-6042970 | None:intergenic | 20.0% |
| !!! | AGCTATATAAGTTAGTTTAT+CGG | + | chr2_1:6043877-6043896 | Msa0190560:intron | 20.0% |
| !!! | AAGGATATTTTTTTTCTATC+AGG | + | chr2_1:6044045-6044064 | Msa0190560:intron | 20.0% |
| !!! | AATCTGAATTTTGATGTAAT+AGG | - | chr2_1:6044204-6044223 | None:intergenic | 20.0% |
| !! | AAACAAAATCAAGAATAAAG+GGG | + | chr2_1:6044570-6044589 | Msa0190560:CDS | 20.0% |
| !! | AAAATTACTCCTTGAATATA+AGG | + | chr2_1:6044845-6044864 | Msa0190560:three_prime_UTR | 20.0% |
| ! | CAAATTATTAATAGACACGT+TGG | + | chr2_1:6040819-6040838 | Msa0190560:intron | 25.0% |
| ! | AATTATTAATAGACACGTTG+GGG | + | chr2_1:6040821-6040840 | Msa0190560:intron | 25.0% |
| !!! | AATTTAGTCTCTGAAATTGT+AGG | - | chr2_1:6040893-6040912 | None:intergenic | 25.0% |
| ! | TACAATTTCAGAGACTAAAT+TGG | + | chr2_1:6040892-6040911 | Msa0190560:intron | 25.0% |
| !! | TTGATTTTTATCTATGGAGT+AGG | + | chr2_1:6040960-6040979 | Msa0190560:intron | 25.0% |
| !! | AATATTTCGGTTTTCCAAAT+TGG | - | chr2_1:6041205-6041224 | None:intergenic | 25.0% |
| ! | TATAATATACAGGTATTTGG+TGG | + | chr2_1:6041764-6041783 | Msa0190560:intron | 25.0% |
| !!! | TTATTTTGTTACAAGGTTAC+TGG | + | chr2_1:6041999-6042018 | Msa0190560:intron | 25.0% |
| ! | AAAATAGTCTAATACCATCA+GGG | - | chr2_1:6042103-6042122 | None:intergenic | 25.0% |
| ! | AAAAATAGTCTAATACCATC+AGG | - | chr2_1:6042104-6042123 | None:intergenic | 25.0% |
| !!! | ATTGATTTGATTGTGATCTA+TGG | + | chr2_1:6042385-6042404 | Msa0190560:intron | 25.0% |
| !!! | TTAATGTTATTTTGGTGTCA+AGG | + | chr2_1:6042649-6042668 | Msa0190560:intron | 25.0% |
| ! | GTTAAAAATGTAAAAAGGAC+TGG | + | chr2_1:6042959-6042978 | Msa0190560:intron | 25.0% |
| ! | CAACAAAAAAAGAACAATTC+AGG | - | chr2_1:6042986-6043005 | None:intergenic | 25.0% |
| ! | TTATCAAATGAGGAATTACA+TGG | + | chr2_1:6043141-6043160 | Msa0190560:intron | 25.0% |
| !! | GTGTGATTCTAACAATTTTA+AGG | + | chr2_1:6043341-6043360 | Msa0190560:intron | 25.0% |
| !!! | ATTCTAACAATTTTAAGGCA+TGG | + | chr2_1:6043346-6043365 | Msa0190560:intron | 25.0% |
| !! | ACATTAACTATTTCTCGATA+GGG | - | chr2_1:6043465-6043484 | None:intergenic | 25.0% |
| !! | AACATTAACTATTTCTCGAT+AGG | - | chr2_1:6043466-6043485 | None:intergenic | 25.0% |
| !!! | CTGTTTTACAATTTAACTTG+TGG | - | chr2_1:6043721-6043740 | None:intergenic | 25.0% |
| ! | AGCTGAAATGACATTTAAAT+TGG | + | chr2_1:6043765-6043784 | Msa0190560:intron | 25.0% |
| !! | TTTACTAAACTCCTCTATTT+TGG | + | chr2_1:6043826-6043845 | Msa0190560:intron | 25.0% |
| !!! | TGAATTTTGATGTAATAGGA+TGG | - | chr2_1:6044200-6044219 | None:intergenic | 25.0% |
| ! | ATCTTCAATCTTGACTTTAT+AGG | + | chr2_1:6044230-6044249 | Msa0190560:intron | 25.0% |
| ! | TCTTCAATCTTGACTTTATA+GGG | + | chr2_1:6044231-6044250 | Msa0190560:intron | 25.0% |
| !! | TTTGGCATTTAACTTTCAAT+TGG | - | chr2_1:6044378-6044397 | None:intergenic | 25.0% |
| ! | TGAATCATACTATGAAATAC+AGG | + | chr2_1:6044471-6044490 | Msa0190560:intron | 25.0% |
| !!! | AATGAAGTTGGGTTTTGTTT+TGG | + | chr2_1:6040183-6040202 | Msa0190560:exon | 30.0% |
| !!! | ATGAAGTTGGGTTTTGTTTT+GGG | + | chr2_1:6040184-6040203 | Msa0190560:CDS | 30.0% |
| GTAGTATTAGTTGTTGAGAA+TGG | - | chr2_1:6040217-6040236 | None:intergenic | 30.0% | |
| TTGTTGTGAGGTGAAAATTA+GGG | - | chr2_1:6040257-6040276 | None:intergenic | 30.0% | |
| AAGAAGAAGAAGAAGTGATT+TGG | - | chr2_1:6040300-6040319 | None:intergenic | 30.0% | |
| ATATGCAGTAAGAAAGAACT+TGG | + | chr2_1:6040411-6040430 | Msa0190560:intron | 30.0% | |
| !! | GTAAGAAAGAACTTGGTTTT+TGG | + | chr2_1:6040418-6040437 | Msa0190560:intron | 30.0% |
| TGGTATAAGGTTCAATATCT+GGG | - | chr2_1:6040558-6040577 | None:intergenic | 30.0% | |
| TTCAAAAAACCAGTGGTATA+AGG | - | chr2_1:6040571-6040590 | None:intergenic | 30.0% | |
| !!! | TTATACCACTGGTTTTTTGA+AGG | + | chr2_1:6040570-6040589 | Msa0190560:CDS | 30.0% |
| GAAATATACAAGTACTCACA+TGG | - | chr2_1:6040645-6040664 | None:intergenic | 30.0% | |
| ATTATTAATAGACACGTTGG+GGG | + | chr2_1:6040822-6040841 | Msa0190560:intron | 30.0% | |
| TGTTATATAATGGCTACATG+TGG | + | chr2_1:6041028-6041047 | Msa0190560:intron | 30.0% | |
| ATCATCTTGAATTCTACATG+AGG | - | chr2_1:6041106-6041125 | None:intergenic | 30.0% | |
| AATTCCAATAGAATGGTCTA+CGG | - | chr2_1:6041134-6041153 | None:intergenic | 30.0% | |
| TGATATATGTAGTTCATCTG+TGG | + | chr2_1:6041153-6041172 | Msa0190560:intron | 30.0% | |
| TTTGGAAAACCGAAATATTC+TGG | + | chr2_1:6041206-6041225 | Msa0190560:intron | 30.0% | |
| TTGGAAAACCGAAATATTCT+GGG | + | chr2_1:6041207-6041226 | Msa0190560:intron | 30.0% | |
| TCGAAAAATCTCCTATTACT+CGG | - | chr2_1:6041437-6041456 | None:intergenic | 30.0% | |
| !! | AGTATGATTCGGTAAAATTC+AGG | - | chr2_1:6041461-6041480 | None:intergenic | 30.0% |
| CCTGATCAAATAGTATGATT+CGG | - | chr2_1:6041472-6041491 | None:intergenic | 30.0% | |
| TGTGTAATAATTGTGAATCC+AGG | + | chr2_1:6041515-6041534 | Msa0190560:intron | 30.0% | |
| AATAATTGTGAATCCAGGTT+TGG | + | chr2_1:6041520-6041539 | Msa0190560:intron | 30.0% | |
| ATAATTGTGAATCCAGGTTT+GGG | + | chr2_1:6041521-6041540 | Msa0190560:intron | 30.0% | |
| AAATTAGTAATTCCCAAACC+TGG | - | chr2_1:6041536-6041555 | None:intergenic | 30.0% | |
| ! | TAATTTTCTCTTTACCAGAG+AGG | + | chr2_1:6041550-6041569 | Msa0190560:intron | 30.0% |
| AGATGTGTAATCTGTAGTTA+AGG | + | chr2_1:6041934-6041953 | Msa0190560:intron | 30.0% | |
| AAAAAGCGAACAACATAACA+TGG | - | chr2_1:6041968-6041987 | None:intergenic | 30.0% | |
| CAATCTCTTTCTTCCTTAAA+AGG | - | chr2_1:6042046-6042065 | None:intergenic | 30.0% | |
| TAAGGAAGAAAGAGATTGAT+TGG | + | chr2_1:6042048-6042067 | Msa0190560:CDS | 30.0% | |
| !!! | AGAGATTGATTGGTTTTATG+AGG | + | chr2_1:6042058-6042077 | Msa0190560:CDS | 30.0% |
| !!! | GAGATTGATTGGTTTTATGA+GGG | + | chr2_1:6042059-6042078 | Msa0190560:CDS | 30.0% |
| TTTGATACATAGAATAAGCC+TGG | + | chr2_1:6042209-6042228 | Msa0190560:intron | 30.0% | |
| ! | AAAACAAGCTTTATGACTGT+CGG | - | chr2_1:6042621-6042640 | None:intergenic | 30.0% |
| ATACAAAGACCTATTGGTAT+TGG | - | chr2_1:6042771-6042790 | None:intergenic | 30.0% | |
| AATCAGATACAAAGACCTAT+TGG | - | chr2_1:6042777-6042796 | None:intergenic | 30.0% | |
| AAATTGTTAATGTACCTGAC+TGG | + | chr2_1:6042821-6042840 | Msa0190560:intron | 30.0% | |
| !! | TTTCTTTTTATTTGAGGGGA+TGG | + | chr2_1:6042914-6042933 | Msa0190560:intron | 30.0% |
| !! | TTCTTTTTATTTGAGGGGAT+GGG | + | chr2_1:6042915-6042934 | Msa0190560:intron | 30.0% |
| CATACTAAGAACAGAGATAT+AGG | - | chr2_1:6043017-6043036 | None:intergenic | 30.0% | |
| !! | AGACAATGATTACTTTTCAC+TGG | + | chr2_1:6043113-6043132 | Msa0190560:CDS | 30.0% |
| ACTGGTAAGTTTATCAAATG+AGG | + | chr2_1:6043131-6043150 | Msa0190560:intron | 30.0% | |
| ! | ATGAGGAATTACATGGATTT+TGG | + | chr2_1:6043148-6043167 | Msa0190560:intron | 30.0% |
| ATGCATATAAATGCAGTACA+CGG | + | chr2_1:6043385-6043404 | Msa0190560:intron | 30.0% | |
| !!! | TACACGGTGAATTTTTTATG+TGG | + | chr2_1:6043401-6043420 | Msa0190560:intron | 30.0% |
| ! | ATTAACTATTTCTCGATAGG+GGG | - | chr2_1:6043463-6043482 | None:intergenic | 30.0% |
| ! | CATTAACTATTTCTCGATAG+GGG | - | chr2_1:6043464-6043483 | None:intergenic | 30.0% |
| TAATGTTCTATGATCTCTCT+AGG | + | chr2_1:6043479-6043498 | Msa0190560:intron | 30.0% | |
| !! | GATTATTCTTCTCTAAAACG+AGG | + | chr2_1:6043533-6043552 | Msa0190560:intron | 30.0% |
| ! | AGTAGCTAATAGCTTTTCTT+GGG | - | chr2_1:6043794-6043813 | None:intergenic | 30.0% |
| TCTGATTCATTCTTGTTAGA+CGG | + | chr2_1:6044118-6044137 | Msa0190560:CDS | 30.0% | |
| !! | TAGACGGAGTTGATAAAATA+AGG | + | chr2_1:6044134-6044153 | Msa0190560:CDS | 30.0% |
| GAAAGTTAAATGCCAAATGA+CGG | + | chr2_1:6044381-6044400 | Msa0190560:intron | 30.0% | |
| TGAATAACAAAACCGTCATT+TGG | - | chr2_1:6044396-6044415 | None:intergenic | 30.0% | |
| ! | AAGTTTTGCTCAAGATTAAC+TGG | - | chr2_1:6044440-6044459 | None:intergenic | 30.0% |
| AGTTAATCTTGAGCAAAACT+TGG | + | chr2_1:6044439-6044458 | Msa0190560:intron | 30.0% | |
| ATCATACTATGAAATACAGG+TGG | + | chr2_1:6044474-6044493 | Msa0190560:intron | 30.0% | |
| GACAACCAAGTAAAAACAAA+AGG | + | chr2_1:6044606-6044625 | Msa0190560:three_prime_UTR | 30.0% | |
| TTCTATTGTGACAATGATGA+AGG | - | chr2_1:6044717-6044736 | None:intergenic | 30.0% | |
| ATTTGGTTGCCTTATATTCA+AGG | - | chr2_1:6044857-6044876 | None:intergenic | 30.0% | |
| GTTGTTGTGAGGTGAAAATT+AGG | - | chr2_1:6040258-6040277 | None:intergenic | 35.0% | |
| ! | TTGTAGTAGTTGTTGTTGTG+AGG | - | chr2_1:6040269-6040288 | None:intergenic | 35.0% |
| TCTTCTTCTTCTTCTTCTTC+AGG | + | chr2_1:6040307-6040326 | Msa0190560:CDS | 35.0% | |
| ! | TTCTTTGATGGCTTCACAAA+AGG | + | chr2_1:6040501-6040520 | Msa0190560:CDS | 35.0% |
| GTGGTATAAGGTTCAATATC+TGG | - | chr2_1:6040559-6040578 | None:intergenic | 35.0% | |
| GATATTGAACCTTATACCAC+TGG | + | chr2_1:6040559-6040578 | Msa0190560:CDS | 35.0% | |
| TGAAACCTTCAAAAAACCAG+TGG | - | chr2_1:6040578-6040597 | None:intergenic | 35.0% | |
| AGATCTTCACACTATCTACT+GGG | + | chr2_1:6040597-6040616 | Msa0190560:CDS | 35.0% | |
| TTATTAATAGACACGTTGGG+GGG | + | chr2_1:6040823-6040842 | Msa0190560:intron | 35.0% | |
| ATTGATGAAACTGGAATGTG+AGG | + | chr2_1:6041002-6041021 | Msa0190560:intron | 35.0% | |
| !! | TGTGAGGCACTGTTATATAA+TGG | + | chr2_1:6041018-6041037 | Msa0190560:intron | 35.0% |
| GAATTCTACATGAGGCTTAA+TGG | - | chr2_1:6041098-6041117 | None:intergenic | 35.0% | |
| AATTCCGTAGACCATTCTAT+TGG | + | chr2_1:6041127-6041146 | Msa0190560:intron | 35.0% | |
| TATATGTAGTTCATCTGTGG+TGG | + | chr2_1:6041156-6041175 | Msa0190560:intron | 35.0% | |
| !! | TGTTTTTATGGGAGCCAATT+TGG | + | chr2_1:6041188-6041207 | Msa0190560:intron | 35.0% |
| GCATAAAATCAAGGGATAAG+CGG | - | chr2_1:6041311-6041330 | None:intergenic | 35.0% | |
| GAAAAATCTCCTATTACTCG+GGG | - | chr2_1:6041435-6041454 | None:intergenic | 35.0% | |
| CGAAAAATCTCCTATTACTC+GGG | - | chr2_1:6041436-6041455 | None:intergenic | 35.0% | |
| CCGAATCATACTATTTGATC+AGG | + | chr2_1:6041469-6041488 | Msa0190560:CDS | 35.0% | |
| AACATTTGCAGATTCCAGAA+TGG | + | chr2_1:6041653-6041672 | Msa0190560:CDS | 35.0% | |
| !!! | ATTGATTGGTTTTATGAGGG+TGG | + | chr2_1:6042062-6042081 | Msa0190560:CDS | 35.0% |
| ! | CATTTTTCTCATGTCAGCTT+GGG | + | chr2_1:6042458-6042477 | Msa0190560:intron | 35.0% |
| ! | TCTGGAATAAGATCTCTGAA+TGG | - | chr2_1:6042486-6042505 | None:intergenic | 35.0% |
| CAGAGATCTTATTCCAGAAA+AGG | + | chr2_1:6042488-6042507 | Msa0190560:CDS | 35.0% | |
| ! | AAACAAGCTTTATGACTGTC+GGG | - | chr2_1:6042620-6042639 | None:intergenic | 35.0% |
| AGGCTATTACTCACATCTAT+TGG | + | chr2_1:6042669-6042688 | Msa0190560:intron | 35.0% | |
| !! | ATTGGTATTGGTAACTGGTA+AGG | - | chr2_1:6042759-6042778 | None:intergenic | 35.0% |
| TACCAGTTACCAATACCAAT+AGG | + | chr2_1:6042759-6042778 | Msa0190560:intron | 35.0% | |
| !! | TCTTTTTATTTGAGGGGATG+GGG | + | chr2_1:6042916-6042935 | Msa0190560:intron | 35.0% |
| ! | CTTTTGACGGTATCTTCATT+TGG | - | chr2_1:6043090-6043109 | None:intergenic | 35.0% |
| AATGAAGATACCGTCAAAAG+AGG | + | chr2_1:6043090-6043109 | Msa0190560:CDS | 35.0% | |
| ! | ATCATTGTCTCCTCTTTTGA+CGG | - | chr2_1:6043103-6043122 | None:intergenic | 35.0% |
| !! | TTTTGGCTGATAAAATGCTG+TGG | + | chr2_1:6043165-6043184 | Msa0190560:intron | 35.0% |
| GAGAAATTCGGAATAGAGAA+GGG | - | chr2_1:6043220-6043239 | None:intergenic | 35.0% | |
| AGAGAAATTCGGAATAGAGA+AGG | - | chr2_1:6043221-6043240 | None:intergenic | 35.0% | |
| TCGGGAAATCAAGAGAAATT+CGG | - | chr2_1:6043232-6043251 | None:intergenic | 35.0% | |
| CATTCTCAAGAATGCATATC+GGG | - | chr2_1:6043250-6043269 | None:intergenic | 35.0% | |
| CCATTCTCAAGAATGCATAT+CGG | - | chr2_1:6043251-6043270 | None:intergenic | 35.0% | |
| ATGCATTCTTGAGAATGGTA+TGG | + | chr2_1:6043253-6043272 | Msa0190560:intron | 35.0% | |
| ! | TAAAAGGTTTTCCGCAAACA+CGG | - | chr2_1:6043439-6043458 | None:intergenic | 35.0% |
| AGGTTGACACTAAATAGCAA+TGG | + | chr2_1:6043499-6043518 | Msa0190560:intron | 35.0% | |
| GGAAAAGAATTTGACAAACC+AGG | + | chr2_1:6043554-6043573 | Msa0190560:intron | 35.0% | |
| AGATGTAGAAAGAAGAGCAA+TGG | - | chr2_1:6043601-6043620 | None:intergenic | 35.0% | |
| ! | CAGTAGCTAATAGCTTTTCT+TGG | - | chr2_1:6043795-6043814 | None:intergenic | 35.0% |
| ! | TTTTGGTCAAGCAAGCTTAT+AGG | + | chr2_1:6043843-6043862 | Msa0190560:intron | 35.0% |
| CTATTCTTCCACTTATACTG+CGG | - | chr2_1:6043918-6043937 | None:intergenic | 35.0% | |
| GCAGTATAAGTGGAAGAATA+GGG | + | chr2_1:6043917-6043936 | Msa0190560:intron | 35.0% | |
| CAGTATAAGTGGAAGAATAG+GGG | + | chr2_1:6043918-6043937 | Msa0190560:intron | 35.0% | |
| TGACTTATGAGTGATGTCAA+AGG | + | chr2_1:6044026-6044045 | Msa0190560:intron | 35.0% | |
| ! | TTTTCTATCAGGCATTTGCA+AGG | + | chr2_1:6044056-6044075 | Msa0190560:intron | 35.0% |
| AAACCACTATTTCGTCAACA+AGG | + | chr2_1:6044084-6044103 | Msa0190560:CDS | 35.0% | |
| AACCACTATTTCGTCAACAA+GGG | + | chr2_1:6044085-6044104 | Msa0190560:CDS | 35.0% | |
| !!! | TAAGAAGAGAGTGTTGCTTT+TGG | + | chr2_1:6044328-6044347 | Msa0190560:intron | 35.0% |
| !!! | CTGCACCTTTTGTTTTTACT+TGG | - | chr2_1:6044614-6044633 | None:intergenic | 35.0% |
| ! | GTAAAAACAAAAGGTGCAGT+TGG | + | chr2_1:6044615-6044634 | Msa0190560:three_prime_UTR | 35.0% |
| TTTATTTCCTTGCAGACACA+AGG | - | chr2_1:6044666-6044685 | None:intergenic | 35.0% | |
| ATCCAAACAAAGCCTTAGAG+AGG | - | chr2_1:6040342-6040361 | None:intergenic | 40.0% | |
| ACCTCCTACTACTTCTTTGA+TGG | + | chr2_1:6040489-6040508 | Msa0190560:CDS | 40.0% | |
| GAAGCCATCAAAGAAGTAGT+AGG | - | chr2_1:6040496-6040515 | None:intergenic | 40.0% | |
| ! | GGGTACAAATTTGTGTTGAC+TGG | - | chr2_1:6040538-6040557 | None:intergenic | 40.0% |
| CAGATCTTCACACTATCTAC+TGG | + | chr2_1:6040596-6040615 | Msa0190560:CDS | 40.0% | |
| !! | TCTCTGAAATTGTAGGTGTC+GGG | - | chr2_1:6040886-6040905 | None:intergenic | 40.0% |
| !! | GTCTCTGAAATTGTAGGTGT+CGG | - | chr2_1:6040887-6040906 | None:intergenic | 40.0% |
| !!! | TGGACTGGCTCATGTTTTTA+TGG | + | chr2_1:6041176-6041195 | Msa0190560:intron | 40.0% |
| !!! | GGACTGGCTCATGTTTTTAT+GGG | + | chr2_1:6041177-6041196 | Msa0190560:intron | 40.0% |
| TGTTCTGGCCCAGAATATTT+CGG | - | chr2_1:6041218-6041237 | None:intergenic | 40.0% | |
| ! | TTATGCTCTAAGCAAGCATG+GGG | - | chr2_1:6041592-6041611 | None:intergenic | 40.0% |
| ! | GTTATGCTCTAAGCAAGCAT+GGG | - | chr2_1:6041593-6041612 | None:intergenic | 40.0% |
| ! | TGTTATGCTCTAAGCAAGCA+TGG | - | chr2_1:6041594-6041613 | None:intergenic | 40.0% |
| CTTAGAGCATAACACCACAT+GGG | + | chr2_1:6041600-6041619 | Msa0190560:CDS | 40.0% | |
| GTATGGTGATAAACAACCAG+AGG | - | chr2_1:6041693-6041712 | None:intergenic | 40.0% | |
| ! | TACAGGTATTTGGTGGATCA+TGG | + | chr2_1:6041771-6041790 | Msa0190560:intron | 40.0% |
| ! | ACAGGTATTTGGTGGATCAT+GGG | + | chr2_1:6041772-6041791 | Msa0190560:intron | 40.0% |
| TTAAAAGGAAGATTCCCCTG+AGG | - | chr2_1:6042031-6042050 | None:intergenic | 40.0% | |
| ! | TCAGGGGAATCTTCCTTTTA+AGG | + | chr2_1:6042030-6042049 | Msa0190560:CDS | 40.0% |
| TAGAATAAGCCTGGAGCTTT+AGG | + | chr2_1:6042218-6042237 | Msa0190560:intron | 40.0% | |
| CAGATATAACCTAAAGCTCC+AGG | - | chr2_1:6042230-6042249 | None:intergenic | 40.0% | |
| ! | GCATTTTTCTCATGTCAGCT+TGG | + | chr2_1:6042457-6042476 | Msa0190560:intron | 40.0% |
| CTTATTCCAGAAAAGGAGAG+AGG | + | chr2_1:6042495-6042514 | Msa0190560:CDS | 40.0% | |
| ! | AAACATCCTCTCTCCTTTTC+TGG | - | chr2_1:6042504-6042523 | None:intergenic | 40.0% |
| ! | AACAAGCTTTATGACTGTCG+GGG | - | chr2_1:6042619-6042638 | None:intergenic | 40.0% |
| CTATTGGCGTAAACACTTCT+AGG | + | chr2_1:6042685-6042704 | Msa0190560:intron | 40.0% | |
| !! | GACCTATTGGTATTGGTAAC+TGG | - | chr2_1:6042764-6042783 | None:intergenic | 40.0% |
| TACCTGACTGGATTATCAGA+TGG | + | chr2_1:6042833-6042852 | Msa0190560:intron | 40.0% | |
| AGCAGTCATCATTTCCCATT+TGG | - | chr2_1:6043058-6043077 | None:intergenic | 40.0% | |
| CCGATATGCATTCTTGAGAA+TGG | + | chr2_1:6043248-6043267 | Msa0190560:intron | 40.0% | |
| CTTGAATTATGCCGTGTTTG+CGG | + | chr2_1:6043425-6043444 | Msa0190560:intron | 40.0% | |
| TTTCTCGATAGGGGGATAAA+AGG | - | chr2_1:6043455-6043474 | None:intergenic | 40.0% | |
| AACCAGGATTTGTACCCTTA+AGG | + | chr2_1:6043570-6043589 | Msa0190560:intron | 40.0% | |
| GAGCAATGGATATGCCTTAA+GGG | - | chr2_1:6043587-6043606 | None:intergenic | 40.0% | |
| AGAGCAATGGATATGCCTTA+AGG | - | chr2_1:6043588-6043607 | None:intergenic | 40.0% | |
| AAATTGCCTAAGAAAGCGAG+GGG | - | chr2_1:6043644-6043663 | None:intergenic | 40.0% | |
| CAAATTGCCTAAGAAAGCGA+GGG | - | chr2_1:6043645-6043664 | None:intergenic | 40.0% | |
| ACAAATTGCCTAAGAAAGCG+AGG | - | chr2_1:6043646-6043665 | None:intergenic | 40.0% | |
| ! | AGCTTGCTTGACCAAAATAG+AGG | - | chr2_1:6043840-6043859 | None:intergenic | 40.0% |
| !! | ACTTATACTGCGGCTTTGTT+TGG | - | chr2_1:6043908-6043927 | None:intergenic | 40.0% |
| AAACAAAGCCGCAGTATAAG+TGG | + | chr2_1:6043907-6043926 | Msa0190560:intron | 40.0% | |
| CGCAGTATAAGTGGAAGAAT+AGG | + | chr2_1:6043916-6043935 | Msa0190560:intron | 40.0% | |
| ATCCCTTGTTGACGAAATAG+TGG | - | chr2_1:6044090-6044109 | None:intergenic | 40.0% | |
| ATAAAGGGGACTAAAGTGAG+TGG | + | chr2_1:6044584-6044603 | Msa0190560:exon | 40.0% | |
| ! | AAACAAAAGGTGCAGTTGGT+TGG | + | chr2_1:6044619-6044638 | Msa0190560:three_prime_UTR | 40.0% |
| AGGTAACTTCCTCCTCTCTA+AGG | + | chr2_1:6040327-6040346 | Msa0190560:intron | 45.0% | |
| CAAACAAAGCCTTAGAGAGG+AGG | - | chr2_1:6040339-6040358 | None:intergenic | 45.0% | |
| !! | CTCCTCTCTAAGGCTTTGTT+TGG | + | chr2_1:6040337-6040356 | Msa0190560:intron | 45.0% |
| !! | AAGTAGTAGGAGGTACTGAG+TGG | - | chr2_1:6040483-6040502 | None:intergenic | 45.0% |
| GCCATCAAAGAAGTAGTAGG+AGG | - | chr2_1:6040493-6040512 | None:intergenic | 45.0% | |
| ACTATCTACTGGGAGCAATC+TGG | + | chr2_1:6040607-6040626 | Msa0190560:CDS | 45.0% | |
| ATTCTGGGCCAGAACAATCT+CGG | + | chr2_1:6041222-6041241 | Msa0190560:intron | 45.0% | |
| ATCTCGGCTGGAACAGTATT+TGG | + | chr2_1:6041238-6041257 | Msa0190560:intron | 45.0% | |
| TCTCGGCTGGAACAGTATTT+GGG | + | chr2_1:6041239-6041258 | Msa0190560:intron | 45.0% | |
| CGAGTAATCAGGCTAGAGTT+CGG | - | chr2_1:6041286-6041305 | None:intergenic | 45.0% | |
| CGAACTCTAGCCTGATTACT+CGG | + | chr2_1:6041284-6041303 | Msa0190560:intron | 45.0% | |
| GAACTCTAGCCTGATTACTC+GGG | + | chr2_1:6041285-6041304 | Msa0190560:intron | 45.0% | |
| CAGCCAGTTGTATTCCTACA+TGG | + | chr2_1:6041389-6041408 | Msa0190560:intron | 45.0% | |
| CCTCCATGTAGGAATACAAC+TGG | - | chr2_1:6041395-6041414 | None:intergenic | 45.0% | |
| CCAGTTGTATTCCTACATGG+AGG | + | chr2_1:6041392-6041411 | Msa0190560:CDS | 45.0% | |
| TTCTCTTTACCAGAGAGGTG+CGG | + | chr2_1:6041555-6041574 | Msa0190560:intron | 45.0% | |
| GCTTAGAGCATAACACCACA+TGG | + | chr2_1:6041599-6041618 | Msa0190560:CDS | 45.0% | |
| GTCATCAATAAGGTCCCATG+TGG | - | chr2_1:6041617-6041636 | None:intergenic | 45.0% | |
| TTTGCAGATTCCAGAATGGC+AGG | + | chr2_1:6041657-6041676 | Msa0190560:CDS | 45.0% | |
| TGAAAGATGACCTGCCATTC+TGG | - | chr2_1:6041670-6041689 | None:intergenic | 45.0% | |
| ! | CAGGTATTTGGTGGATCATG+GGG | + | chr2_1:6041773-6041792 | Msa0190560:intron | 45.0% |
| ACATGCTACACACCTTGTCT+GGG | - | chr2_1:6041832-6041851 | None:intergenic | 45.0% | |
| AACATGCTACACACCTTGTC+TGG | - | chr2_1:6041833-6041852 | None:intergenic | 45.0% | |
| CTCTGATGACATCGAAACTC+AGG | + | chr2_1:6042551-6042570 | Msa0190560:CDS | 45.0% | |
| AACTCAGGTGAGTCTTTGTC+TGG | + | chr2_1:6042566-6042585 | Msa0190560:intron | 45.0% | |
| ! | ACAAGCTTTATGACTGTCGG+GGG | - | chr2_1:6042618-6042637 | None:intergenic | 45.0% |
| AGCCATCTGATAATCCAGTC+AGG | - | chr2_1:6042838-6042857 | None:intergenic | 45.0% | |
| ! | TGCCTTAAGGGTACAAATCC+TGG | - | chr2_1:6043575-6043594 | None:intergenic | 45.0% |
| GGTCAAGCAAGCTTATAGGT+CGG | + | chr2_1:6043847-6043866 | Msa0190560:intron | 45.0% | |
| GTGATTTACCTGCACGATTG+TGG | - | chr2_1:6044170-6044189 | None:intergenic | 45.0% | |
| ATACAGGTGGTTTCAGATGC+AGG | + | chr2_1:6044487-6044506 | Msa0190560:intron | 45.0% | |
| TTTCCTTGCAGACACAAGGA+AGG | - | chr2_1:6044662-6044681 | None:intergenic | 45.0% | |
| ! | GTGACGCTCATGTTTTGCAA+AGG | + | chr2_1:6044688-6044707 | Msa0190560:intron | 45.0% |
| ! | TCAGCTTTATGCTGGTGGTT+TGG | + | chr2_1:6044770-6044789 | Msa0190560:three_prime_UTR | 45.0% |
| !!! | TTTTTTTTTTAATGTTATTT+TGG | + | chr2_1:6042641-6042660 | Msa0190560:intron | 5.0% |
| GAGCAATCTGGAAATCCCAC+TGG | + | chr2_1:6040619-6040638 | Msa0190560:CDS | 50.0% | |
| CAAGTACTCACATGGCCAGT+GGG | - | chr2_1:6040637-6040656 | None:intergenic | 50.0% | |
| ACAAGTACTCACATGGCCAG+TGG | - | chr2_1:6040638-6040657 | None:intergenic | 50.0% | |
| ! | ACGCCTTTGATCAGAGGTGT+CGG | - | chr2_1:6040731-6040750 | None:intergenic | 50.0% |
| !! | GTAGTTCATCTGTGGTGGAC+TGG | + | chr2_1:6041161-6041180 | Msa0190560:intron | 50.0% |
| TGTTCCAGCCGAGATTGTTC+TGG | - | chr2_1:6041233-6041252 | None:intergenic | 50.0% | |
| TAGGAATACAACTGGCTGCC+AGG | - | chr2_1:6041387-6041406 | None:intergenic | 50.0% | |
| ! | TCTCTTTACCAGAGAGGTGC+GGG | + | chr2_1:6041556-6041575 | Msa0190560:intron | 50.0% |
| ACACCTTGTCTGGGTGAGAT+TGG | - | chr2_1:6041823-6041842 | None:intergenic | 50.0% | |
| GCTGCTGCAATATACCCTGA+TGG | + | chr2_1:6042086-6042105 | Msa0190560:CDS | 50.0% | |
| TGTCGGGGGGAAAATGAAGA+AGG | - | chr2_1:6042604-6042623 | None:intergenic | 50.0% | |
| ! | CAAGCTTTATGACTGTCGGG+GGG | - | chr2_1:6042617-6042636 | None:intergenic | 50.0% |
| ATTTGAGGGGATGGGGATTC+AGG | + | chr2_1:6042923-6042942 | Msa0190560:intron | 50.0% | |
| TTTGAGGGGATGGGGATTCA+GGG | + | chr2_1:6042924-6042943 | Msa0190560:intron | 50.0% | |
| CCATTTGGTCCATGCTCTAG+CGG | - | chr2_1:6043043-6043062 | None:intergenic | 50.0% | |
| CGCTAGAGCATGGACCAAAT+GGG | + | chr2_1:6043041-6043060 | Msa0190560:CDS | 50.0% | |
| TAAGAGCCCCTCGCTTTCTT+AGG | + | chr2_1:6043635-6043654 | Msa0190560:intron | 50.0% | |
| TATCGACACCACAATCGTGC+AGG | + | chr2_1:6044159-6044178 | Msa0190560:CDS | 50.0% | |
| GATCCCAGGCTGACATCATA+GGG | - | chr2_1:6044275-6044294 | None:intergenic | 50.0% | |
| AGATCCCAGGCTGACATCAT+AGG | - | chr2_1:6044276-6044295 | None:intergenic | 50.0% | |
| CCACGCTTTATGAAGATCCC+AGG | - | chr2_1:6044289-6044308 | None:intergenic | 50.0% | |
| CCTGGGATCTTCATAAAGCG+TGG | + | chr2_1:6044286-6044305 | Msa0190560:CDS | 50.0% | |
| TCTTCATAAAGCGTGGCCAG+AGG | + | chr2_1:6044293-6044312 | Msa0190560:CDS | 50.0% | |
| CTTACCCGAAAATCTGCCTC+TGG | - | chr2_1:6044312-6044331 | None:intergenic | 50.0% | |
| AGCTATGCCTGGTTCATTGG+CGG | - | chr2_1:6044518-6044537 | None:intergenic | 50.0% | |
| AGCAGCTATGCCTGGTTCAT+TGG | - | chr2_1:6044521-6044540 | None:intergenic | 50.0% | |
| ACAAGTTCAGCAGCTATGCC+TGG | - | chr2_1:6044529-6044548 | None:intergenic | 50.0% | |
| AGGCATAGCTGCTGAACTTG+TGG | + | chr2_1:6044528-6044547 | Msa0190560:CDS | 50.0% | |
| CATCCTTCCTTGTGTCTGCA+AGG | + | chr2_1:6044656-6044675 | Msa0190560:intron | 50.0% | |
| ! | ATCCCAGCTCAGCTTTATGC+TGG | + | chr2_1:6044762-6044781 | Msa0190560:three_prime_UTR | 50.0% |
| CACCAGCATAAAGCTGAGCT+GGG | - | chr2_1:6044767-6044786 | None:intergenic | 50.0% | |
| !! | GAGGTGTCGGTGCTACACAA+TGG | - | chr2_1:6040718-6040737 | None:intergenic | 55.0% |
| ! | GCACCGACACCTCTGATCAA+AGG | + | chr2_1:6040725-6040744 | Msa0190560:intron | 55.0% |
| CCAGACACGCCTTTGATCAG+AGG | - | chr2_1:6040737-6040756 | None:intergenic | 55.0% | |
| ! | CCTCTGATCAAAGGCGTGTC+TGG | + | chr2_1:6040734-6040753 | Msa0190560:intron | 55.0% |
| GATAAGCGGCCCGAGTAATC+AGG | - | chr2_1:6041297-6041316 | None:intergenic | 55.0% | |
| GTATTCCTACATGGAGGCCC+TGG | + | chr2_1:6041398-6041417 | Msa0190560:CDS | 55.0% | |
| GGGGAACTTCCCCGAGTAAT+AGG | + | chr2_1:6041423-6041442 | Msa0190560:CDS | 55.0% | |
| ! | CTCTTTACCAGAGAGGTGCG+GGG | + | chr2_1:6041557-6041576 | Msa0190560:intron | 55.0% |
| GGCAGGTCATCTTTCACCTC+TGG | + | chr2_1:6041674-6041693 | Msa0190560:intron | 55.0% | |
| CAGCCAATCTCACCCAGACA+AGG | + | chr2_1:6041817-6041836 | Msa0190560:CDS | 55.0% | |
| AGGTTACTGGCATCGTCCTC+AGG | + | chr2_1:6042012-6042031 | Msa0190560:intron | 55.0% | |
| GGTTACTGGCATCGTCCTCA+GGG | + | chr2_1:6042013-6042032 | Msa0190560:intron | 55.0% | |
| GTTACTGGCATCGTCCTCAG+GGG | + | chr2_1:6042014-6042033 | Msa0190560:CDS | 55.0% | |
| AGTATGCTGCCGCTAGAGCA+TGG | + | chr2_1:6043031-6043050 | Msa0190560:intron | 55.0% | |
| CCGCTAGAGCATGGACCAAA+TGG | + | chr2_1:6043040-6043059 | Msa0190560:CDS | 55.0% | |
| CTGCCCTATGATGTCAGCCT+GGG | + | chr2_1:6044269-6044288 | Msa0190560:CDS | 55.0% | |
| ! | CGTGGCCAGAGGCAGATTTT+CGG | + | chr2_1:6044304-6044323 | Msa0190560:CDS | 55.0% |
| ! | GTGGCCAGAGGCAGATTTTC+GGG | + | chr2_1:6044305-6044324 | Msa0190560:CDS | 55.0% |
| GGACATTCCGCCAATGAACC+AGG | + | chr2_1:6044508-6044527 | Msa0190560:CDS | 55.0% | |
| CCACCAGCATAAAGCTGAGC+TGG | - | chr2_1:6044768-6044787 | None:intergenic | 55.0% | |
| ! | CCAGCTCAGCTTTATGCTGG+TGG | + | chr2_1:6044765-6044784 | Msa0190560:three_prime_UTR | 55.0% |
| TGGGCCAGAACAATCTCGGC+TGG | + | chr2_1:6041226-6041245 | Msa0190560:intron | 60.0% | |
| TTCCTACATGGAGGCCCTGG+AGG | + | chr2_1:6041401-6041420 | Msa0190560:CDS | 60.0% | |
| TCCTACATGGAGGCCCTGGA+GGG | + | chr2_1:6041402-6041421 | Msa0190560:CDS | 60.0% | |
| ! | TGCTTTTCCCCGCACCTCTC+TGG | - | chr2_1:6041567-6041586 | None:intergenic | 60.0% |
| GCTGCCCTATGATGTCAGCC+TGG | + | chr2_1:6044268-6044287 | Msa0190560:CDS | 60.0% | |
| CCTACATGGAGGCCCTGGAG+GGG | + | chr2_1:6041403-6041422 | Msa0190560:CDS | 65.0% | |
| CTACATGGAGGCCCTGGAGG+GGG | + | chr2_1:6041404-6041423 | Msa0190560:CDS | 65.0% | |
| TCGGGGAAGTTCCCCCTCCA+GGG | - | chr2_1:6041418-6041437 | None:intergenic | 65.0% | |
| CCCCTCCAGGGCCTCCATGT+AGG | - | chr2_1:6041406-6041425 | None:intergenic | 70.0% | |
| CTCGGGGAAGTTCCCCCTCC+AGG | - | chr2_1:6041419-6041438 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 6040142 | 6044877 | 6040142 | ID=Msa0190560;Name=Msa0190560 |
| chr2_1 | mRNA | 6040142 | 6044877 | 6040142 | ID=Msa0190560-mRNA-1;Parent=Msa0190560;Name=Msa0190560-mRNA-1;_AED=0.13;_eAED=0.13;_QI=42|1|1|1|0.90|0.83|12|248|410 |
| chr2_1 | exon | 6040142 | 6040328 | 6040142 | ID=Msa0190560-mRNA-1:exon:2719;Parent=Msa0190560-mRNA-1 |
| chr2_1 | exon | 6040419 | 6040645 | 6040419 | ID=Msa0190560-mRNA-1:exon:2720;Parent=Msa0190560-mRNA-1 |
| chr2_1 | exon | 6041392 | 6041490 | 6041392 | ID=Msa0190560-mRNA-1:exon:2721;Parent=Msa0190560-mRNA-1 |
| chr2_1 | exon | 6041568 | 6041678 | 6041568 | ID=Msa0190560-mRNA-1:exon:2722;Parent=Msa0190560-mRNA-1 |
| chr2_1 | exon | 6041776 | 6041838 | 6041776 | ID=Msa0190560-mRNA-1:exon:2723;Parent=Msa0190560-mRNA-1 |
| chr2_1 | exon | 6042014 | 6042107 | 6042014 | ID=Msa0190560-mRNA-1:exon:2724;Parent=Msa0190560-mRNA-1 |
| chr2_1 | exon | 6042475 | 6042572 | 6042475 | ID=Msa0190560-mRNA-1:exon:2725;Parent=Msa0190560-mRNA-1 |
| chr2_1 | exon | 6043033 | 6043134 | 6043033 | ID=Msa0190560-mRNA-1:exon:2726;Parent=Msa0190560-mRNA-1 |
| chr2_1 | exon | 6044067 | 6044180 | 6044067 | ID=Msa0190560-mRNA-1:exon:2727;Parent=Msa0190560-mRNA-1 |
| chr2_1 | exon | 6044252 | 6044326 | 6044252 | ID=Msa0190560-mRNA-1:exon:2728;Parent=Msa0190560-mRNA-1 |
| chr2_1 | exon | 6044493 | 6044666 | 6044493 | ID=Msa0190560-mRNA-1:exon:2729;Parent=Msa0190560-mRNA-1 |
| chr2_1 | exon | 6044699 | 6044877 | 6044699 | ID=Msa0190560-mRNA-1:exon:2730;Parent=Msa0190560-mRNA-1 |
| chr2_1 | five_prime_UTR | 6040142 | 6040183 | 6040142 | ID=Msa0190560-mRNA-1:five_prime_utr;Parent=Msa0190560-mRNA-1 |
| chr2_1 | CDS | 6040184 | 6040328 | 6040184 | ID=Msa0190560-mRNA-1:cds;Parent=Msa0190560-mRNA-1 |
| chr2_1 | CDS | 6040419 | 6040645 | 6040419 | ID=Msa0190560-mRNA-1:cds;Parent=Msa0190560-mRNA-1 |
| chr2_1 | CDS | 6041392 | 6041490 | 6041392 | ID=Msa0190560-mRNA-1:cds;Parent=Msa0190560-mRNA-1 |
| chr2_1 | CDS | 6041568 | 6041678 | 6041568 | ID=Msa0190560-mRNA-1:cds;Parent=Msa0190560-mRNA-1 |
| chr2_1 | CDS | 6041776 | 6041838 | 6041776 | ID=Msa0190560-mRNA-1:cds;Parent=Msa0190560-mRNA-1 |
| chr2_1 | CDS | 6042014 | 6042107 | 6042014 | ID=Msa0190560-mRNA-1:cds;Parent=Msa0190560-mRNA-1 |
| chr2_1 | CDS | 6042475 | 6042572 | 6042475 | ID=Msa0190560-mRNA-1:cds;Parent=Msa0190560-mRNA-1 |
| chr2_1 | CDS | 6043033 | 6043134 | 6043033 | ID=Msa0190560-mRNA-1:cds;Parent=Msa0190560-mRNA-1 |
| chr2_1 | CDS | 6044067 | 6044180 | 6044067 | ID=Msa0190560-mRNA-1:cds;Parent=Msa0190560-mRNA-1 |
| chr2_1 | CDS | 6044252 | 6044326 | 6044252 | ID=Msa0190560-mRNA-1:cds;Parent=Msa0190560-mRNA-1 |
| chr2_1 | CDS | 6044493 | 6044597 | 6044493 | ID=Msa0190560-mRNA-1:cds;Parent=Msa0190560-mRNA-1 |
| chr2_1 | three_prime_UTR | 6044598 | 6044666 | 6044598 | ID=Msa0190560-mRNA-1:three_prime_utr;Parent=Msa0190560-mRNA-1 |
| chr2_1 | three_prime_UTR | 6044699 | 6044877 | 6044699 | ID=Msa0190560-mRNA-1:three_prime_utr;Parent=Msa0190560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
