Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1343160 | XP_003593347.1 | 95.343 | 408 | 9 | 3 | 1 | 406 | 1 | 400 | 0.0 | 801 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1343160 | sp|P93732|PIP_ARATH | 84.244 | 311 | 48 | 1 | 89 | 398 | 66 | 376 | 0.0 | 566 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1343160 | G7IFC0 | 95.343 | 408 | 9 | 3 | 1 | 406 | 1 | 400 | 0.0 | 801 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0819540 | Msa1343160 | 0.824516 | 7.736059e-54 | -8.615850e-47 |
| Msa0126880 | Msa1343160 | 0.810293 | 1.238976e-50 | -8.615850e-47 |
| Msa0171980 | Msa1343160 | 0.806397 | 8.393117e-50 | -8.615850e-47 |
| Msa0190560 | Msa1343160 | 0.907164 | 6.806810e-81 | -8.615850e-47 |
| Msa0229360 | Msa1343160 | 0.818047 | 2.403770e-52 | -8.615850e-47 |
| Msa1323690 | Msa1343160 | 0.805143 | 1.539183e-49 | -8.615850e-47 |
| Msa1343160 | Msa1343190 | 0.932010 | 1.616017e-94 | -8.615850e-47 |
| Msa0372490 | Msa1343160 | 0.800594 | 1.339733e-48 | -8.615850e-47 |
| Msa1070390 | Msa1343160 | 0.800604 | 1.333016e-48 | -8.615850e-47 |
| Msa1131560 | Msa1343160 | 0.810415 | 1.165639e-50 | -8.615850e-47 |
| Msa1188560 | Msa1343160 | 0.839320 | 1.700341e-57 | -8.615850e-47 |
| Msa1205480 | Msa1343160 | 0.802975 | 4.347451e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1343160 | MtrunA17_Chr2g0280211 | 95.343 | 408 | 9 | 3 | 1 | 406 | 1 | 400 | 0.0 | 801 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1343160 | AT2G14260.1 | 84.244 | 311 | 48 | 1 | 89 | 398 | 66 | 376 | 0.0 | 566 |
| Msa1343160 | AT2G14260.3 | 84.244 | 311 | 48 | 1 | 89 | 398 | 15 | 325 | 0.0 | 565 |
| Msa1343160 | AT2G14260.2 | 84.244 | 311 | 48 | 1 | 89 | 398 | 15 | 325 | 0.0 | 565 |
| Msa1343160 | AT2G14260.4 | 84.231 | 260 | 40 | 1 | 89 | 347 | 66 | 325 | 2.49e-165 | 469 |
Find 112 sgRNAs with CRISPR-Local
Find 335 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATCTCTTTCTTCCTTAAA+AGG | 0.212696 | tig0006327:-12156 | None:intergenic |
| TAATATAATATACAGGTATT+TGG | 0.271484 | tig0006327:+11874 | Msa1343160:intron |
| ACCTCCTACTACTTCTTTGA+TGG | 0.279710 | tig0006327:+10602 | Msa1343160:CDS |
| AACATGCTACACACCTTGTC+TGG | 0.280322 | tig0006327:-11943 | None:intergenic |
| TAGACGGAGTTGATAAAATA+AGG | 0.294530 | tig0006327:+14247 | Msa1343160:CDS |
| GTGGTATAAGGTTCAATATC+TGG | 0.295560 | tig0006327:-10669 | None:intergenic |
| AAAATTACTCCTTGAATATA+AGG | 0.299469 | tig0006327:+14958 | Msa1343160:three_prime_UTR |
| CACCAAACCACTTCTTCTTC+AGG | 0.313096 | tig0006327:+10415 | Msa1343160:CDS |
| GTTGTTGTGAGGTGAAAATT+AGG | 0.314778 | tig0006327:-10375 | None:intergenic |
| TGAAAGATGACCTGCCATTC+TGG | 0.315372 | tig0006327:-11780 | None:intergenic |
| GGGGAACTTCCCCGAGTAAT+AGG | 0.329132 | tig0006327:+11536 | Msa1343160:CDS |
| CAAAACCGAAAAGCAATAAT+AGG | 0.346939 | tig0006327:+10261 | Msa1343160:five_prime_UTR |
| AGTATGATTCGGTAAAATTC+AGG | 0.352593 | tig0006327:-11571 | None:intergenic |
| TAAGGAAGAAAGAGATTGAT+TGG | 0.356029 | tig0006327:+12161 | Msa1343160:CDS |
| AGCAGCTATGCCTGGTTCAT+TGG | 0.356957 | tig0006327:-14631 | None:intergenic |
| AGATCCCAGGCTGACATCAT+AGG | 0.366457 | tig0006327:-14386 | None:intergenic |
| AGGTTACTGGCATCGTCCTC+AGG | 0.380001 | tig0006327:+12125 | Msa1343160:intron |
| AGCAGTCATCATTTCCCATT+TGG | 0.384899 | tig0006327:-13168 | None:intergenic |
| AAAACAAAATCAAGAATAAA+GGG | 0.386373 | tig0006327:+14682 | Msa1343160:CDS |
| TCAGCTTTATGCTGGTGGTT+TGG | 0.388346 | tig0006327:+14883 | Msa1343160:three_prime_UTR |
| CCGAATCATACTATTTGATC+AGG | 0.399067 | tig0006327:+11582 | Msa1343160:CDS |
| CCGCTAGAGCATGGACCAAA+TGG | 0.402654 | tig0006327:+13153 | Msa1343160:CDS |
| TTAATAACAAAGAATGAAGT+TGG | 0.411395 | tig0006327:+10291 | Msa1343160:exon |
| CAGATCTTCACACTATCTAC+TGG | 0.413115 | tig0006327:+10709 | Msa1343160:CDS |
| ATCCCTTGTTGACGAAATAG+TGG | 0.419846 | tig0006327:-14200 | None:intergenic |
| TACAGGTATTTGGTGGATCA+TGG | 0.425085 | tig0006327:+11884 | Msa1343160:intron |
| ACTATCTACTGGGAGCAATC+TGG | 0.425472 | tig0006327:+10720 | Msa1343160:CDS |
| GCTGCCCTATGATGTCAGCC+TGG | 0.426579 | tig0006327:+14381 | Msa1343160:CDS |
| CAGAGATCTTATTCCAGAAA+AGG | 0.427576 | tig0006327:+12601 | Msa1343160:CDS |
| GTAGTATTAGTTGTTGAGAA+TGG | 0.429175 | tig0006327:-10334 | None:intergenic |
| TCTCTTTACCAGAGAGGTGC+GGG | 0.441056 | tig0006327:+11669 | Msa1343160:intron |
| CCACCAGCATAAAGCTGAGC+TGG | 0.451180 | tig0006327:-14878 | None:intergenic |
| TTCTATTGTGACAATGATGA+AGG | 0.451250 | tig0006327:-14827 | None:intergenic |
| ATTTGGTTGCCTTATATTCA+AGG | 0.453747 | tig0006327:-14967 | None:intergenic |
| ACACCTTGTCTGGGTGAGAT+TGG | 0.456816 | tig0006327:-11933 | None:intergenic |
| TTCTTTGATGGCTTCACAAA+AGG | 0.457949 | tig0006327:+10614 | Msa1343160:CDS |
| CGCTAGAGCATGGACCAAAT+GGG | 0.461856 | tig0006327:+13154 | Msa1343160:CDS |
| ATATGCAGTAAGAAAGAACT+TGG | 0.474476 | tig0006327:+10524 | Msa1343160:intron |
| CCTGATCAAATAGTATGATT+CGG | 0.483407 | tig0006327:-11582 | None:intergenic |
| TACCTGAAGAAGAAGTGGTT+TGG | 0.485410 | tig0006327:-10417 | None:intergenic |
| CTACATGGAGGCCCTGGAGG+GGG | 0.488526 | tig0006327:+11517 | Msa1343160:CDS |
| GATATTGAACCTTATACCAC+TGG | 0.494227 | tig0006327:+10672 | Msa1343160:CDS |
| ACAGGTATTTGGTGGATCAT+GGG | 0.494915 | tig0006327:+11885 | Msa1343160:intron |
| TAATAACAAAGAATGAAGTT+GGG | 0.495195 | tig0006327:+10292 | Msa1343160:exon |
| CCAGCTCAGCTTTATGCTGG+TGG | 0.497912 | tig0006327:+14878 | Msa1343160:three_prime_UTR |
| ATACAGGTGGTTTCAGATGC+AGG | 0.499919 | tig0006327:+14600 | Msa1343160:intron |
| TTCCTACATGGAGGCCCTGG+AGG | 0.504186 | tig0006327:+11514 | Msa1343160:CDS |
| ATCCCAGCTCAGCTTTATGC+TGG | 0.504560 | tig0006327:+14875 | Msa1343160:three_prime_UTR |
| TTGTTGTGAGGTGAAAATTA+GGG | 0.507478 | tig0006327:-10374 | None:intergenic |
| AAACAAAAGGTGCAGTTGGT+TGG | 0.509162 | tig0006327:+14732 | Msa1343160:three_prime_UTR |
| CAGCCAGTTGTATTCCTACA+TGG | 0.513350 | tig0006327:+11502 | Msa1343160:intron |
| CCTCCATGTAGGAATACAAC+TGG | 0.513574 | tig0006327:-11505 | None:intergenic |
| TCTGATTCATTCTTGTTAGA+CGG | 0.517803 | tig0006327:+14231 | Msa1343160:CDS |
| GTATTCCTACATGGAGGCCC+TGG | 0.518972 | tig0006327:+11511 | Msa1343160:CDS |
| CTGCCCTATGATGTCAGCCT+GGG | 0.519055 | tig0006327:+14382 | Msa1343160:CDS |
| TTTGCAGATTCCAGAATGGC+AGG | 0.525461 | tig0006327:+11770 | Msa1343160:CDS |
| AATGAAGATACCGTCAAAAG+AGG | 0.525628 | tig0006327:+13203 | Msa1343160:CDS |
| AGCTATGCCTGGTTCATTGG+CGG | 0.526445 | tig0006327:-14628 | None:intergenic |
| ACAAGTTCAGCAGCTATGCC+TGG | 0.527402 | tig0006327:-14639 | None:intergenic |
| GAAGCCATCAAAGAAGTAGT+AGG | 0.528019 | tig0006327:-10606 | None:intergenic |
| TATAATATACAGGTATTTGG+TGG | 0.536899 | tig0006327:+11877 | Msa1343160:intron |
| TGGTATAAGGTTCAATATCT+GGG | 0.538042 | tig0006327:-10668 | None:intergenic |
| AACATTTGCAGATTCCAGAA+TGG | 0.539684 | tig0006327:+11766 | Msa1343160:CDS |
| GATCCCAGGCTGACATCATA+GGG | 0.540983 | tig0006327:-14385 | None:intergenic |
| TCCTACATGGAGGCCCTGGA+GGG | 0.541912 | tig0006327:+11515 | Msa1343160:CDS |
| CTTACCCGAAAATCTGCCTC+TGG | 0.542931 | tig0006327:-14422 | None:intergenic |
| GGACATTCCGCCAATGAACC+AGG | 0.545853 | tig0006327:+14621 | Msa1343160:CDS |
| CTCTGATGACATCGAAACTC+AGG | 0.546649 | tig0006327:+12664 | Msa1343160:CDS |
| GGGTACAAATTTGTGTTGAC+TGG | 0.549973 | tig0006327:-10648 | None:intergenic |
| AGTATGCTGCCGCTAGAGCA+TGG | 0.551887 | tig0006327:+13144 | Msa1343160:intron |
| TCTGGAATAAGATCTCTGAA+TGG | 0.552392 | tig0006327:-12596 | None:intergenic |
| GGTTACTGGCATCGTCCTCA+GGG | 0.553143 | tig0006327:+12126 | Msa1343160:intron |
| ACATGCTACACACCTTGTCT+GGG | 0.557071 | tig0006327:-11942 | None:intergenic |
| CCTACATGGAGGCCCTGGAG+GGG | 0.561466 | tig0006327:+11516 | Msa1343160:CDS |
| GAAGTTACCTGAAGAAGAAG+TGG | 0.565991 | tig0006327:-10422 | None:intergenic |
| AGGCATAGCTGCTGAACTTG+TGG | 0.566543 | tig0006327:+14641 | Msa1343160:CDS |
| TTTCCTTGCAGACATAAGGA+AGG | 0.574571 | tig0006327:-14772 | None:intergenic |
| CACCAGCATAAAGCTGAGCT+GGG | 0.575185 | tig0006327:-14877 | None:intergenic |
| CCCCTCCAGGGCCTCCATGT+AGG | 0.577239 | tig0006327:-11516 | None:intergenic |
| AAACCACTATTTCGTCAACA+AGG | 0.580929 | tig0006327:+14197 | Msa1343160:CDS |
| CAAGTACTCACATGGCCAGT+GGG | 0.590555 | tig0006327:-10747 | None:intergenic |
| GTGATTTACCTGCACGATTG+TGG | 0.594189 | tig0006327:-14280 | None:intergenic |
| CCACGCTTTATGAAGATCCC+AGG | 0.594872 | tig0006327:-14399 | None:intergenic |
| CAGGTATTTGGTGGATCATG+GGG | 0.595807 | tig0006327:+11886 | Msa1343160:intron |
| TATCGACACCACAATCGTGC+AGG | 0.597111 | tig0006327:+14272 | Msa1343160:CDS |
| AACCACTATTTCGTCAACAA+GGG | 0.605554 | tig0006327:+14198 | Msa1343160:CDS |
| TGTTATGCTCTAAGCAAGCA+TGG | 0.608642 | tig0006327:-11704 | None:intergenic |
| AGATCTTCACACTATCTACT+GGG | 0.609166 | tig0006327:+10710 | Msa1343160:CDS |
| GTTATGCTCTAAGCAAGCAT+GGG | 0.610694 | tig0006327:-11703 | None:intergenic |
| GCCATCAAAGAAGTAGTAGG+AGG | 0.612123 | tig0006327:-10603 | None:intergenic |
| TTCTCTTTACCAGAGAGGTG+CGG | 0.613919 | tig0006327:+11668 | Msa1343160:intron |
| GAGCAATCTGGAAATCCCAC+TGG | 0.617071 | tig0006327:+10732 | Msa1343160:CDS |
| AAAATAGTCTAATACCATCA+GGG | 0.617415 | tig0006327:-12213 | None:intergenic |
| AAGTAGTAGGAGGTACTGAG+TGG | 0.619050 | tig0006327:-10593 | None:intergenic |
| TTGTAGTAGTTGTTGTTGTG+AGG | 0.628510 | tig0006327:-10386 | None:intergenic |
| CTTATTCCAGAAAAGGAGAG+AGG | 0.629277 | tig0006327:+12608 | Msa1343160:CDS |
| CTCTTTACCAGAGAGGTGCG+GGG | 0.631774 | tig0006327:+11670 | Msa1343160:intron |
| CCATTTGGTCCATGCTCTAG+CGG | 0.635703 | tig0006327:-13153 | None:intergenic |
| CAGCCAATCTCACCCAGACA+AGG | 0.636145 | tig0006327:+11930 | Msa1343160:CDS |
| ATAAAGGGGACTAAAGTGAG+TGG | 0.641202 | tig0006327:+14697 | Msa1343160:exon |
| AAACAAAATCAAGAATAAAG+GGG | 0.642276 | tig0006327:+14683 | Msa1343160:CDS |
| GCTTAGAGCATAACACCACA+TGG | 0.643086 | tig0006327:+11712 | Msa1343160:CDS |
| ACAAGTACTCACATGGCCAG+TGG | 0.644818 | tig0006327:-10748 | None:intergenic |
| CCTGGGATCTTCATAAAGCG+TGG | 0.651742 | tig0006327:+14399 | Msa1343160:CDS |
| TCTTCATAAAGCGTGGCCAG+AGG | 0.656424 | tig0006327:+14406 | Msa1343160:CDS |
| GCTGCTGCAATATACCCTGA+TGG | 0.658878 | tig0006327:+12199 | Msa1343160:CDS |
| TTATGCTCTAAGCAAGCATG+GGG | 0.676961 | tig0006327:-11702 | None:intergenic |
| CCAGTTGTATTCCTACATGG+AGG | 0.687512 | tig0006327:+11505 | Msa1343160:CDS |
| GTCATCAATAAGGTCCCATG+TGG | 0.703571 | tig0006327:-11727 | None:intergenic |
| CTTAGAGCATAACACCACAT+GGG | 0.720902 | tig0006327:+11713 | Msa1343160:CDS |
| GTTACTGGCATCGTCCTCAG+GGG | 0.725237 | tig0006327:+12127 | Msa1343160:CDS |
| TTAAAAGGAAGATTCCCCTG+AGG | 0.766974 | tig0006327:-12141 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTATTATTTTGTTACA+AGG | + | tig0006327:12105-12124 | Msa1343160:intron | 10.0% |
| !!! | AAATAACTTTACATTTTAAA+AGG | - | tig0006327:12294-12313 | None:intergenic | 10.0% |
| !!! | ATTTTTTTCTTTTTATTTGA+GGG | + | tig0006327:13022-13041 | Msa1343160:intron | 10.0% |
| !!! | TTTGAAATTTCATTTATGTT+AGG | + | tig0006327:10963-10982 | Msa1343160:intron | 15.0% |
| !! | TTGAAATTTCATTTATGTTA+GGG | + | tig0006327:10964-10983 | Msa1343160:intron | 15.0% |
| !!! | TTGTTATTAAAAACTTCAAA+TGG | - | tig0006327:11038-11057 | None:intergenic | 15.0% |
| !! | AATAAAATGCATAAAATCAA+GGG | - | tig0006327:11432-11451 | None:intergenic | 15.0% |
| !!! | ATTTTAAGATTCTTATGTAA+TGG | + | tig0006327:11830-11849 | Msa1343160:intron | 15.0% |
| !! | AACCATATAATATAATATAC+AGG | + | tig0006327:11867-11886 | Msa1343160:intron | 15.0% |
| !! | TACCTGTATATTATATTATA+TGG | - | tig0006327:11872-11891 | None:intergenic | 15.0% |
| !! | TAATATAATATACAGGTATT+TGG | + | tig0006327:11874-11893 | Msa1343160:intron | 15.0% |
| !!! | GTTTTATATAATGTAAAAGA+AGG | - | tig0006327:11982-12001 | None:intergenic | 15.0% |
| !!! | ATTATTTTTTGTTGTTAGTT+TGG | + | tig0006327:12444-12463 | Msa1343160:intron | 15.0% |
| !!! | GATTTTTTTCTTTTTATTTG+AGG | + | tig0006327:13021-13040 | Msa1343160:intron | 15.0% |
| !!! | TTTTTTTCTTTTTATTTGAG+GGG | + | tig0006327:13023-13042 | Msa1343160:intron | 15.0% |
| !! | TCTTTGTTAAAAATGTAAAA+AGG | + | tig0006327:13067-13086 | Msa1343160:intron | 15.0% |
| !!! | TAGACTTGATATTTTAAAAA+AGG | - | tig0006327:14070-14089 | None:intergenic | 15.0% |
| !! | TCTCAATTATAAATTATGAA+GGG | - | tig0006327:14102-14121 | None:intergenic | 15.0% |
| !! | ATCTCAATTATAAATTATGA+AGG | - | tig0006327:14103-14122 | None:intergenic | 15.0% |
| !! | AAAAACAAAATCAAGAATAA+AGG | + | tig0006327:14681-14700 | Msa1343160:CDS | 15.0% |
| !! | AAAACAAAATCAAGAATAAA+GGG | + | tig0006327:14682-14701 | Msa1343160:CDS | 15.0% |
| !!! | TTTTTCCTATTATTGCTTTT+CGG | - | tig0006327:10269-10288 | None:intergenic | 20.0% |
| !! | TTAATAACAAAGAATGAAGT+TGG | + | tig0006327:10291-10310 | Msa1343160:exon | 20.0% |
| !! | TAATAACAAAGAATGAAGTT+GGG | + | tig0006327:10292-10311 | Msa1343160:exon | 20.0% |
| !!! | TATTTTCAACACTAAATTGA+TGG | - | tig0006327:10790-10809 | None:intergenic | 20.0% |
| !!! | AATGGATGATTTTGAATTTT+AGG | - | tig0006327:10813-10832 | None:intergenic | 20.0% |
| !! | TTAATTGAATGTAATCACAT+GGG | - | tig0006327:10901-10920 | None:intergenic | 20.0% |
| !! | ATTAATTGAATGTAATCACA+TGG | - | tig0006327:10902-10921 | None:intergenic | 20.0% |
| !! | AAATTATTAATAGACACGTT+GGG | + | tig0006327:10933-10952 | Msa1343160:intron | 20.0% |
| !!! | CTTTTCTTGATTTTTATCTA+TGG | + | tig0006327:11067-11086 | Msa1343160:intron | 20.0% |
| !!! | TATATATTGATTGATGAAAC+TGG | + | tig0006327:11106-11125 | Msa1343160:intron | 20.0% |
| !! | ATATATCAATTCCAATAGAA+TGG | - | tig0006327:11254-11273 | None:intergenic | 20.0% |
| !! | GAATAAAATGCATAAAATCA+AGG | - | tig0006327:11433-11452 | None:intergenic | 20.0% |
| !!! | TAATTTTATAAACACTTTCC+TGG | + | tig0006327:11479-11498 | Msa1343160:intron | 20.0% |
| !!! | ATTTTTCAATGTCATCAATA+AGG | - | tig0006327:11740-11759 | None:intergenic | 20.0% |
| !! | AGAATCTTAAAATGTATGTA+TGG | - | tig0006327:11823-11842 | None:intergenic | 20.0% |
| !!! | AACTTTACATTTTAAAAGGA+AGG | - | tig0006327:12290-12309 | None:intergenic | 20.0% |
| !!! | GAACTAAAATTATTTTCATG+AGG | + | tig0006327:12378-12397 | Msa1343160:intron | 20.0% |
| !! | AAAAAAATCATGACTTTAAG+TGG | + | tig0006327:12535-12554 | Msa1343160:intron | 20.0% |
| !! | TATAGTTGAAGATAATTGAA+CGG | + | tig0006327:12832-12851 | Msa1343160:intron | 20.0% |
| !! | CCATCATGTAAAAATTAAAA+TGG | - | tig0006327:13002-13021 | None:intergenic | 20.0% |
| !!! | CCATTTTAATTTTTACATGA+TGG | + | tig0006327:12999-13018 | Msa1343160:intron | 20.0% |
| !!! | TACATTTTTAACAAAGAGAT+TGG | - | tig0006327:13064-13083 | None:intergenic | 20.0% |
| !!! | AGCTATATAAGTTAGTTTAT+CGG | + | tig0006327:13990-14009 | Msa1343160:intron | 20.0% |
| !!! | AAGGATATTTTTTTTCTATC+AGG | + | tig0006327:14158-14177 | Msa1343160:intron | 20.0% |
| !!! | AATCTGAATTTTGATGTAAT+AGG | - | tig0006327:14317-14336 | None:intergenic | 20.0% |
| !! | AAACAAAATCAAGAATAAAG+GGG | + | tig0006327:14683-14702 | Msa1343160:CDS | 20.0% |
| !! | AAAATTACTCCTTGAATATA+AGG | + | tig0006327:14958-14977 | Msa1343160:three_prime_UTR | 20.0% |
| ! | CAAATTATTAATAGACACGT+TGG | + | tig0006327:10932-10951 | Msa1343160:intron | 25.0% |
| ! | AATTATTAATAGACACGTTG+GGG | + | tig0006327:10934-10953 | Msa1343160:intron | 25.0% |
| !!! | AATTTAGTCTCTGAAATTGT+AGG | - | tig0006327:11006-11025 | None:intergenic | 25.0% |
| ! | TACAATTTCAGAGACTAAAT+TGG | + | tig0006327:11005-11024 | Msa1343160:intron | 25.0% |
| !! | TTGATTTTTATCTATGGAGT+AGG | + | tig0006327:11073-11092 | Msa1343160:intron | 25.0% |
| !! | AATATTTCGGTTTTCCAAAT+TGG | - | tig0006327:11318-11337 | None:intergenic | 25.0% |
| ! | TATAATATACAGGTATTTGG+TGG | + | tig0006327:11877-11896 | Msa1343160:intron | 25.0% |
| !!! | TTATTTTGTTACAAGGTTAC+TGG | + | tig0006327:12112-12131 | Msa1343160:intron | 25.0% |
| ! | AAAATAGTCTAATACCATCA+GGG | - | tig0006327:12216-12235 | None:intergenic | 25.0% |
| ! | AAAAATAGTCTAATACCATC+AGG | - | tig0006327:12217-12236 | None:intergenic | 25.0% |
| !!! | ATTGATTTGATTGTGATCTA+TGG | + | tig0006327:12498-12517 | Msa1343160:intron | 25.0% |
| !!! | TTAATGTTATTTTGGTGTCA+AGG | + | tig0006327:12762-12781 | Msa1343160:intron | 25.0% |
| ! | GTTAAAAATGTAAAAAGGAC+TGG | + | tig0006327:13072-13091 | Msa1343160:intron | 25.0% |
| ! | CAACAAAAAAAGAACAATTC+AGG | - | tig0006327:13099-13118 | None:intergenic | 25.0% |
| ! | TTATCAAATGAGGAATTACA+TGG | + | tig0006327:13254-13273 | Msa1343160:intron | 25.0% |
| !! | GTGTGATTCTAACAATTTTA+AGG | + | tig0006327:13454-13473 | Msa1343160:intron | 25.0% |
| !!! | ATTCTAACAATTTTAAGGCA+TGG | + | tig0006327:13459-13478 | Msa1343160:intron | 25.0% |
| !! | ACATTAACTATTTCTCGATA+GGG | - | tig0006327:13578-13597 | None:intergenic | 25.0% |
| !! | AACATTAACTATTTCTCGAT+AGG | - | tig0006327:13579-13598 | None:intergenic | 25.0% |
| !!! | CTGTTTTACAATTTAACTTG+TGG | - | tig0006327:13834-13853 | None:intergenic | 25.0% |
| ! | AGCTGAAATGACATTTAAAT+TGG | + | tig0006327:13878-13897 | Msa1343160:intron | 25.0% |
| !! | TTTACTAAACTCCTCTATTT+TGG | + | tig0006327:13939-13958 | Msa1343160:intron | 25.0% |
| !!! | TGAATTTTGATGTAATAGGA+TGG | - | tig0006327:14313-14332 | None:intergenic | 25.0% |
| ! | ATCTTCAATCTTGACTTTAT+AGG | + | tig0006327:14343-14362 | Msa1343160:intron | 25.0% |
| ! | TCTTCAATCTTGACTTTATA+GGG | + | tig0006327:14344-14363 | Msa1343160:intron | 25.0% |
| !! | TTTGGCATTTAACTTTCAAT+TGG | - | tig0006327:14491-14510 | None:intergenic | 25.0% |
| ! | TGAATCATACTATGAAATAC+AGG | + | tig0006327:14584-14603 | Msa1343160:intron | 25.0% |
| !! | CTATTATTGCTTTTCGGTTT+TGG | - | tig0006327:10263-10282 | None:intergenic | 30.0% |
| CAAAACCGAAAAGCAATAAT+AGG | + | tig0006327:10261-10280 | Msa1343160:five_prime_UTR | 30.0% | |
| !!! | AATGAAGTTGGGTTTTGTTT+TGG | + | tig0006327:10303-10322 | Msa1343160:exon | 30.0% |
| !!! | ATGAAGTTGGGTTTTGTTTT+GGG | + | tig0006327:10304-10323 | Msa1343160:CDS | 30.0% |
| GTAGTATTAGTTGTTGAGAA+TGG | - | tig0006327:10337-10356 | None:intergenic | 30.0% | |
| TTGTTGTGAGGTGAAAATTA+GGG | - | tig0006327:10377-10396 | None:intergenic | 30.0% | |
| ATATGCAGTAAGAAAGAACT+TGG | + | tig0006327:10524-10543 | Msa1343160:intron | 30.0% | |
| !! | GTAAGAAAGAACTTGGTTTT+TGG | + | tig0006327:10531-10550 | Msa1343160:intron | 30.0% |
| TGGTATAAGGTTCAATATCT+GGG | - | tig0006327:10671-10690 | None:intergenic | 30.0% | |
| TTCAAAAAACCAGTGGTATA+AGG | - | tig0006327:10684-10703 | None:intergenic | 30.0% | |
| !!! | TTATACCACTGGTTTTTTGA+AGG | + | tig0006327:10683-10702 | Msa1343160:CDS | 30.0% |
| GAAATATACAAGTACTCACA+TGG | - | tig0006327:10758-10777 | None:intergenic | 30.0% | |
| ATTATTAATAGACACGTTGG+GGG | + | tig0006327:10935-10954 | Msa1343160:intron | 30.0% | |
| TGTTATATAATGGCTACATG+TGG | + | tig0006327:11141-11160 | Msa1343160:intron | 30.0% | |
| ATCATCTTGAATTCTACATG+AGG | - | tig0006327:11219-11238 | None:intergenic | 30.0% | |
| AATTCCAATAGAATGGTCTA+CGG | - | tig0006327:11247-11266 | None:intergenic | 30.0% | |
| TGATATATGTAGTTCATCTG+TGG | + | tig0006327:11266-11285 | Msa1343160:intron | 30.0% | |
| TTTGGAAAACCGAAATATTC+TGG | + | tig0006327:11319-11338 | Msa1343160:intron | 30.0% | |
| TTGGAAAACCGAAATATTCT+GGG | + | tig0006327:11320-11339 | Msa1343160:intron | 30.0% | |
| TCGAAAAATCTCCTATTACT+CGG | - | tig0006327:11550-11569 | None:intergenic | 30.0% | |
| !! | AGTATGATTCGGTAAAATTC+AGG | - | tig0006327:11574-11593 | None:intergenic | 30.0% |
| CCTGATCAAATAGTATGATT+CGG | - | tig0006327:11585-11604 | None:intergenic | 30.0% | |
| TGTGTAATAATTGTGAATCC+AGG | + | tig0006327:11628-11647 | Msa1343160:intron | 30.0% | |
| AATAATTGTGAATCCAGGTT+TGG | + | tig0006327:11633-11652 | Msa1343160:intron | 30.0% | |
| ATAATTGTGAATCCAGGTTT+GGG | + | tig0006327:11634-11653 | Msa1343160:intron | 30.0% | |
| AAATTAGTAATTCCCAAACC+TGG | - | tig0006327:11649-11668 | None:intergenic | 30.0% | |
| ! | TAATTTTCTCTTTACCAGAG+AGG | + | tig0006327:11663-11682 | Msa1343160:intron | 30.0% |
| AGATGTGTAATCTGTAGTTA+AGG | + | tig0006327:12047-12066 | Msa1343160:intron | 30.0% | |
| AAAAAGCGAACAACATAACA+TGG | - | tig0006327:12081-12100 | None:intergenic | 30.0% | |
| CAATCTCTTTCTTCCTTAAA+AGG | - | tig0006327:12159-12178 | None:intergenic | 30.0% | |
| TAAGGAAGAAAGAGATTGAT+TGG | + | tig0006327:12161-12180 | Msa1343160:CDS | 30.0% | |
| !!! | AGAGATTGATTGGTTTTATG+AGG | + | tig0006327:12171-12190 | Msa1343160:CDS | 30.0% |
| !!! | GAGATTGATTGGTTTTATGA+GGG | + | tig0006327:12172-12191 | Msa1343160:CDS | 30.0% |
| TTTGATACATAGAATAAGCC+TGG | + | tig0006327:12322-12341 | Msa1343160:intron | 30.0% | |
| ! | AAAACAAGCTTTATGACTGT+CGG | - | tig0006327:12733-12752 | None:intergenic | 30.0% |
| ATACAAAGACCTATTGGTAT+TGG | - | tig0006327:12884-12903 | None:intergenic | 30.0% | |
| AATCAGATACAAAGACCTAT+TGG | - | tig0006327:12890-12909 | None:intergenic | 30.0% | |
| AAATTGTTAATGTACCTGAC+TGG | + | tig0006327:12934-12953 | Msa1343160:intron | 30.0% | |
| !! | TTTCTTTTTATTTGAGGGGA+TGG | + | tig0006327:13027-13046 | Msa1343160:intron | 30.0% |
| !! | TTCTTTTTATTTGAGGGGAT+GGG | + | tig0006327:13028-13047 | Msa1343160:intron | 30.0% |
| CATACTAAGAACAGAGATAT+AGG | - | tig0006327:13130-13149 | None:intergenic | 30.0% | |
| !! | AGACAATGATTACTTTTCAC+TGG | + | tig0006327:13226-13245 | Msa1343160:CDS | 30.0% |
| ACTGGTAAGTTTATCAAATG+AGG | + | tig0006327:13244-13263 | Msa1343160:intron | 30.0% | |
| ! | ATGAGGAATTACATGGATTT+TGG | + | tig0006327:13261-13280 | Msa1343160:intron | 30.0% |
| ATGCATATAAATGCAGTACA+CGG | + | tig0006327:13498-13517 | Msa1343160:intron | 30.0% | |
| !!! | TACACGGTGAATTTTTTATG+TGG | + | tig0006327:13514-13533 | Msa1343160:intron | 30.0% |
| ! | ATTAACTATTTCTCGATAGG+GGG | - | tig0006327:13576-13595 | None:intergenic | 30.0% |
| ! | CATTAACTATTTCTCGATAG+GGG | - | tig0006327:13577-13596 | None:intergenic | 30.0% |
| TAATGTTCTATGATCTCTCT+AGG | + | tig0006327:13592-13611 | Msa1343160:intron | 30.0% | |
| !! | GATTATTCTTCTCTAAAACG+AGG | + | tig0006327:13646-13665 | Msa1343160:intron | 30.0% |
| ! | AGTAGCTAATAGCTTTTCTT+GGG | - | tig0006327:13907-13926 | None:intergenic | 30.0% |
| TCTGATTCATTCTTGTTAGA+CGG | + | tig0006327:14231-14250 | Msa1343160:CDS | 30.0% | |
| !! | TAGACGGAGTTGATAAAATA+AGG | + | tig0006327:14247-14266 | Msa1343160:CDS | 30.0% |
| GAAAGTTAAATGCCAAATGA+CGG | + | tig0006327:14494-14513 | Msa1343160:intron | 30.0% | |
| TGAATAACAAAACCGTCATT+TGG | - | tig0006327:14509-14528 | None:intergenic | 30.0% | |
| ! | AAGTTTTGCTCAAGATTAAC+TGG | - | tig0006327:14553-14572 | None:intergenic | 30.0% |
| AGTTAATCTTGAGCAAAACT+TGG | + | tig0006327:14552-14571 | Msa1343160:intron | 30.0% | |
| ATCATACTATGAAATACAGG+TGG | + | tig0006327:14587-14606 | Msa1343160:intron | 30.0% | |
| GACAACCAAGTAAAAACAAA+AGG | + | tig0006327:14719-14738 | Msa1343160:three_prime_UTR | 30.0% | |
| TTTATTTCCTTGCAGACATA+AGG | - | tig0006327:14779-14798 | None:intergenic | 30.0% | |
| TTCTATTGTGACAATGATGA+AGG | - | tig0006327:14830-14849 | None:intergenic | 30.0% | |
| ATTTGGTTGCCTTATATTCA+AGG | - | tig0006327:14970-14989 | None:intergenic | 30.0% | |
| GTTGTTGTGAGGTGAAAATT+AGG | - | tig0006327:10378-10397 | None:intergenic | 35.0% | |
| ! | TTGTAGTAGTTGTTGTTGTG+AGG | - | tig0006327:10389-10408 | None:intergenic | 35.0% |
| ! | TTCTTTGATGGCTTCACAAA+AGG | + | tig0006327:10614-10633 | Msa1343160:CDS | 35.0% |
| GTGGTATAAGGTTCAATATC+TGG | - | tig0006327:10672-10691 | None:intergenic | 35.0% | |
| GATATTGAACCTTATACCAC+TGG | + | tig0006327:10672-10691 | Msa1343160:CDS | 35.0% | |
| TGAAACCTTCAAAAAACCAG+TGG | - | tig0006327:10691-10710 | None:intergenic | 35.0% | |
| AGATCTTCACACTATCTACT+GGG | + | tig0006327:10710-10729 | Msa1343160:CDS | 35.0% | |
| TTATTAATAGACACGTTGGG+GGG | + | tig0006327:10936-10955 | Msa1343160:intron | 35.0% | |
| ATTGATGAAACTGGAATGTG+AGG | + | tig0006327:11115-11134 | Msa1343160:intron | 35.0% | |
| !! | TGTGAGGCACTGTTATATAA+TGG | + | tig0006327:11131-11150 | Msa1343160:intron | 35.0% |
| GAATTCTACATGAGGCTTAA+TGG | - | tig0006327:11211-11230 | None:intergenic | 35.0% | |
| AATTCCGTAGACCATTCTAT+TGG | + | tig0006327:11240-11259 | Msa1343160:intron | 35.0% | |
| TATATGTAGTTCATCTGTGG+TGG | + | tig0006327:11269-11288 | Msa1343160:intron | 35.0% | |
| !! | TGTTTTTATGGGAGCCAATT+TGG | + | tig0006327:11301-11320 | Msa1343160:intron | 35.0% |
| GCATAAAATCAAGGGATAAG+CGG | - | tig0006327:11424-11443 | None:intergenic | 35.0% | |
| GAAAAATCTCCTATTACTCG+GGG | - | tig0006327:11548-11567 | None:intergenic | 35.0% | |
| CGAAAAATCTCCTATTACTC+GGG | - | tig0006327:11549-11568 | None:intergenic | 35.0% | |
| CCGAATCATACTATTTGATC+AGG | + | tig0006327:11582-11601 | Msa1343160:CDS | 35.0% | |
| AACATTTGCAGATTCCAGAA+TGG | + | tig0006327:11766-11785 | Msa1343160:CDS | 35.0% | |
| !!! | ATTGATTGGTTTTATGAGGG+TGG | + | tig0006327:12175-12194 | Msa1343160:CDS | 35.0% |
| ! | CATTTTTCTCATGTCAGCTT+GGG | + | tig0006327:12571-12590 | Msa1343160:intron | 35.0% |
| ! | TCTGGAATAAGATCTCTGAA+TGG | - | tig0006327:12599-12618 | None:intergenic | 35.0% |
| CAGAGATCTTATTCCAGAAA+AGG | + | tig0006327:12601-12620 | Msa1343160:CDS | 35.0% | |
| ! | AAACAAGCTTTATGACTGTC+GGG | - | tig0006327:12732-12751 | None:intergenic | 35.0% |
| AGGCTATTACTCACATCTAT+TGG | + | tig0006327:12782-12801 | Msa1343160:intron | 35.0% | |
| !! | ATTGGTATTGGTAACTGGTA+AGG | - | tig0006327:12872-12891 | None:intergenic | 35.0% |
| TACCAGTTACCAATACCAAT+AGG | + | tig0006327:12872-12891 | Msa1343160:intron | 35.0% | |
| !! | TCTTTTTATTTGAGGGGATG+GGG | + | tig0006327:13029-13048 | Msa1343160:intron | 35.0% |
| ! | CTTTTGACGGTATCTTCATT+TGG | - | tig0006327:13203-13222 | None:intergenic | 35.0% |
| AATGAAGATACCGTCAAAAG+AGG | + | tig0006327:13203-13222 | Msa1343160:CDS | 35.0% | |
| ! | ATCATTGTCTCCTCTTTTGA+CGG | - | tig0006327:13216-13235 | None:intergenic | 35.0% |
| !! | TTTTGGCTGATAAAATGCTG+TGG | + | tig0006327:13278-13297 | Msa1343160:intron | 35.0% |
| GAGAAATTCGGAATAGAGAA+GGG | - | tig0006327:13333-13352 | None:intergenic | 35.0% | |
| AGAGAAATTCGGAATAGAGA+AGG | - | tig0006327:13334-13353 | None:intergenic | 35.0% | |
| TCGGGAAATCAAGAGAAATT+CGG | - | tig0006327:13345-13364 | None:intergenic | 35.0% | |
| CATTCTCAAGAATGCATATC+GGG | - | tig0006327:13363-13382 | None:intergenic | 35.0% | |
| CCATTCTCAAGAATGCATAT+CGG | - | tig0006327:13364-13383 | None:intergenic | 35.0% | |
| ATGCATTCTTGAGAATGGTA+TGG | + | tig0006327:13366-13385 | Msa1343160:intron | 35.0% | |
| ! | TAAAAGGTTTTCCGCAAACA+CGG | - | tig0006327:13552-13571 | None:intergenic | 35.0% |
| AGGTTGACACTAAATAGCAA+TGG | + | tig0006327:13612-13631 | Msa1343160:intron | 35.0% | |
| GGAAAAGAATTTGACAAACC+AGG | + | tig0006327:13667-13686 | Msa1343160:intron | 35.0% | |
| AGATGTAGAAAGAAGAGCAA+TGG | - | tig0006327:13714-13733 | None:intergenic | 35.0% | |
| ! | CAGTAGCTAATAGCTTTTCT+TGG | - | tig0006327:13908-13927 | None:intergenic | 35.0% |
| ! | TTTTGGTCAAGCAAGCTTAT+AGG | + | tig0006327:13956-13975 | Msa1343160:intron | 35.0% |
| CTATTCTTCCACTTATACTG+CGG | - | tig0006327:14031-14050 | None:intergenic | 35.0% | |
| GCAGTATAAGTGGAAGAATA+GGG | + | tig0006327:14030-14049 | Msa1343160:intron | 35.0% | |
| CAGTATAAGTGGAAGAATAG+GGG | + | tig0006327:14031-14050 | Msa1343160:intron | 35.0% | |
| TGACTTATGAGTGATGTCAA+AGG | + | tig0006327:14139-14158 | Msa1343160:intron | 35.0% | |
| ! | TTTTCTATCAGGCATTTGCA+AGG | + | tig0006327:14169-14188 | Msa1343160:intron | 35.0% |
| AAACCACTATTTCGTCAACA+AGG | + | tig0006327:14197-14216 | Msa1343160:CDS | 35.0% | |
| AACCACTATTTCGTCAACAA+GGG | + | tig0006327:14198-14217 | Msa1343160:CDS | 35.0% | |
| !!! | TAAGAAGAGAGTGTTGCTTT+TGG | + | tig0006327:14441-14460 | Msa1343160:intron | 35.0% |
| !!! | CTGCACCTTTTGTTTTTACT+TGG | - | tig0006327:14727-14746 | None:intergenic | 35.0% |
| ! | GTAAAAACAAAAGGTGCAGT+TGG | + | tig0006327:14728-14747 | Msa1343160:three_prime_UTR | 35.0% |
| TACCTGAAGAAGAAGTGGTT+TGG | - | tig0006327:10420-10439 | None:intergenic | 40.0% | |
| GAAGTTACCTGAAGAAGAAG+TGG | - | tig0006327:10425-10444 | None:intergenic | 40.0% | |
| AACAAAGCCTTAGAGTACAG+AGG | - | tig0006327:10450-10469 | None:intergenic | 40.0% | |
| !! | CTGTACTCTAAGGCTTTGTT+TGG | + | tig0006327:10450-10469 | Msa1343160:intron | 40.0% |
| ACCTCCTACTACTTCTTTGA+TGG | + | tig0006327:10602-10621 | Msa1343160:CDS | 40.0% | |
| GAAGCCATCAAAGAAGTAGT+AGG | - | tig0006327:10609-10628 | None:intergenic | 40.0% | |
| ! | GGGTACAAATTTGTGTTGAC+TGG | - | tig0006327:10651-10670 | None:intergenic | 40.0% |
| CAGATCTTCACACTATCTAC+TGG | + | tig0006327:10709-10728 | Msa1343160:CDS | 40.0% | |
| !! | TCTCTGAAATTGTAGGTGTC+GGG | - | tig0006327:10999-11018 | None:intergenic | 40.0% |
| !! | GTCTCTGAAATTGTAGGTGT+CGG | - | tig0006327:11000-11019 | None:intergenic | 40.0% |
| !!! | TGGACTGGCTCATGTTTTTA+TGG | + | tig0006327:11289-11308 | Msa1343160:intron | 40.0% |
| !!! | GGACTGGCTCATGTTTTTAT+GGG | + | tig0006327:11290-11309 | Msa1343160:intron | 40.0% |
| TGTTCTGGCCCAGAATATTT+CGG | - | tig0006327:11331-11350 | None:intergenic | 40.0% | |
| ! | TTATGCTCTAAGCAAGCATG+GGG | - | tig0006327:11705-11724 | None:intergenic | 40.0% |
| ! | GTTATGCTCTAAGCAAGCAT+GGG | - | tig0006327:11706-11725 | None:intergenic | 40.0% |
| ! | TGTTATGCTCTAAGCAAGCA+TGG | - | tig0006327:11707-11726 | None:intergenic | 40.0% |
| CTTAGAGCATAACACCACAT+GGG | + | tig0006327:11713-11732 | Msa1343160:CDS | 40.0% | |
| GTATGGTGATAAACAACCAG+AGG | - | tig0006327:11806-11825 | None:intergenic | 40.0% | |
| ! | TACAGGTATTTGGTGGATCA+TGG | + | tig0006327:11884-11903 | Msa1343160:intron | 40.0% |
| ! | ACAGGTATTTGGTGGATCAT+GGG | + | tig0006327:11885-11904 | Msa1343160:intron | 40.0% |
| TTAAAAGGAAGATTCCCCTG+AGG | - | tig0006327:12144-12163 | None:intergenic | 40.0% | |
| ! | TCAGGGGAATCTTCCTTTTA+AGG | + | tig0006327:12143-12162 | Msa1343160:CDS | 40.0% |
| TAGAATAAGCCTGGAGCTTT+AGG | + | tig0006327:12331-12350 | Msa1343160:intron | 40.0% | |
| CAGATATAACCTAAAGCTCC+AGG | - | tig0006327:12343-12362 | None:intergenic | 40.0% | |
| ! | GCATTTTTCTCATGTCAGCT+TGG | + | tig0006327:12570-12589 | Msa1343160:intron | 40.0% |
| CTTATTCCAGAAAAGGAGAG+AGG | + | tig0006327:12608-12627 | Msa1343160:CDS | 40.0% | |
| ! | AAACATCCTCTCTCCTTTTC+TGG | - | tig0006327:12617-12636 | None:intergenic | 40.0% |
| ! | AACAAGCTTTATGACTGTCG+GGG | - | tig0006327:12731-12750 | None:intergenic | 40.0% |
| CTATTGGCGTAAACACTTCT+AGG | + | tig0006327:12798-12817 | Msa1343160:intron | 40.0% | |
| !! | GACCTATTGGTATTGGTAAC+TGG | - | tig0006327:12877-12896 | None:intergenic | 40.0% |
| TACCTGACTGGATTATCAGA+TGG | + | tig0006327:12946-12965 | Msa1343160:intron | 40.0% | |
| AGCAGTCATCATTTCCCATT+TGG | - | tig0006327:13171-13190 | None:intergenic | 40.0% | |
| CCGATATGCATTCTTGAGAA+TGG | + | tig0006327:13361-13380 | Msa1343160:intron | 40.0% | |
| CTTGAATTATGCCGTGTTTG+CGG | + | tig0006327:13538-13557 | Msa1343160:intron | 40.0% | |
| TTTCTCGATAGGGGGATAAA+AGG | - | tig0006327:13568-13587 | None:intergenic | 40.0% | |
| AACCAGGATTTGTACCCTTA+AGG | + | tig0006327:13683-13702 | Msa1343160:intron | 40.0% | |
| GAGCAATGGATATGCCTTAA+GGG | - | tig0006327:13700-13719 | None:intergenic | 40.0% | |
| AGAGCAATGGATATGCCTTA+AGG | - | tig0006327:13701-13720 | None:intergenic | 40.0% | |
| AAATTGCCTAAGAAAGCGAG+GGG | - | tig0006327:13757-13776 | None:intergenic | 40.0% | |
| CAAATTGCCTAAGAAAGCGA+GGG | - | tig0006327:13758-13777 | None:intergenic | 40.0% | |
| ACAAATTGCCTAAGAAAGCG+AGG | - | tig0006327:13759-13778 | None:intergenic | 40.0% | |
| ! | AGCTTGCTTGACCAAAATAG+AGG | - | tig0006327:13953-13972 | None:intergenic | 40.0% |
| !! | ACTTATACTGCGGCTTTGTT+TGG | - | tig0006327:14021-14040 | None:intergenic | 40.0% |
| AAACAAAGCCGCAGTATAAG+TGG | + | tig0006327:14020-14039 | Msa1343160:intron | 40.0% | |
| CGCAGTATAAGTGGAAGAAT+AGG | + | tig0006327:14029-14048 | Msa1343160:intron | 40.0% | |
| ATCCCTTGTTGACGAAATAG+TGG | - | tig0006327:14203-14222 | None:intergenic | 40.0% | |
| ATAAAGGGGACTAAAGTGAG+TGG | + | tig0006327:14697-14716 | Msa1343160:exon | 40.0% | |
| ! | AAACAAAAGGTGCAGTTGGT+TGG | + | tig0006327:14732-14751 | Msa1343160:three_prime_UTR | 40.0% |
| TTTCCTTGCAGACATAAGGA+AGG | - | tig0006327:14775-14794 | None:intergenic | 40.0% | |
| CACCAAACCACTTCTTCTTC+AGG | + | tig0006327:10415-10434 | Msa1343160:CDS | 45.0% | |
| ACTTCCTCCTCTGTACTCTA+AGG | + | tig0006327:10440-10459 | Msa1343160:intron | 45.0% | |
| AAAGCCTTAGAGTACAGAGG+AGG | - | tig0006327:10447-10466 | None:intergenic | 45.0% | |
| !! | AAGTAGTAGGAGGTACTGAG+TGG | - | tig0006327:10596-10615 | None:intergenic | 45.0% |
| GCCATCAAAGAAGTAGTAGG+AGG | - | tig0006327:10606-10625 | None:intergenic | 45.0% | |
| ACTATCTACTGGGAGCAATC+TGG | + | tig0006327:10720-10739 | Msa1343160:CDS | 45.0% | |
| ATTCTGGGCCAGAACAATCT+CGG | + | tig0006327:11335-11354 | Msa1343160:intron | 45.0% | |
| ATCTCGGCTGGAACAGTATT+TGG | + | tig0006327:11351-11370 | Msa1343160:intron | 45.0% | |
| TCTCGGCTGGAACAGTATTT+GGG | + | tig0006327:11352-11371 | Msa1343160:intron | 45.0% | |
| CGAGTAATCAGGCTAGAGTT+CGG | - | tig0006327:11399-11418 | None:intergenic | 45.0% | |
| CGAACTCTAGCCTGATTACT+CGG | + | tig0006327:11397-11416 | Msa1343160:intron | 45.0% | |
| GAACTCTAGCCTGATTACTC+GGG | + | tig0006327:11398-11417 | Msa1343160:intron | 45.0% | |
| CAGCCAGTTGTATTCCTACA+TGG | + | tig0006327:11502-11521 | Msa1343160:intron | 45.0% | |
| CCTCCATGTAGGAATACAAC+TGG | - | tig0006327:11508-11527 | None:intergenic | 45.0% | |
| CCAGTTGTATTCCTACATGG+AGG | + | tig0006327:11505-11524 | Msa1343160:CDS | 45.0% | |
| TTCTCTTTACCAGAGAGGTG+CGG | + | tig0006327:11668-11687 | Msa1343160:intron | 45.0% | |
| GCTTAGAGCATAACACCACA+TGG | + | tig0006327:11712-11731 | Msa1343160:CDS | 45.0% | |
| GTCATCAATAAGGTCCCATG+TGG | - | tig0006327:11730-11749 | None:intergenic | 45.0% | |
| TTTGCAGATTCCAGAATGGC+AGG | + | tig0006327:11770-11789 | Msa1343160:CDS | 45.0% | |
| TGAAAGATGACCTGCCATTC+TGG | - | tig0006327:11783-11802 | None:intergenic | 45.0% | |
| ! | CAGGTATTTGGTGGATCATG+GGG | + | tig0006327:11886-11905 | Msa1343160:intron | 45.0% |
| ACATGCTACACACCTTGTCT+GGG | - | tig0006327:11945-11964 | None:intergenic | 45.0% | |
| AACATGCTACACACCTTGTC+TGG | - | tig0006327:11946-11965 | None:intergenic | 45.0% | |
| CTCTGATGACATCGAAACTC+AGG | + | tig0006327:12664-12683 | Msa1343160:CDS | 45.0% | |
| AACTCAGGTGAGTCTTTGTC+TGG | + | tig0006327:12679-12698 | Msa1343160:intron | 45.0% | |
| ! | ACAAGCTTTATGACTGTCGG+GGG | - | tig0006327:12730-12749 | None:intergenic | 45.0% |
| AGCCATCTGATAATCCAGTC+AGG | - | tig0006327:12951-12970 | None:intergenic | 45.0% | |
| ! | TGCCTTAAGGGTACAAATCC+TGG | - | tig0006327:13688-13707 | None:intergenic | 45.0% |
| GGTCAAGCAAGCTTATAGGT+CGG | + | tig0006327:13960-13979 | Msa1343160:intron | 45.0% | |
| GTGATTTACCTGCACGATTG+TGG | - | tig0006327:14283-14302 | None:intergenic | 45.0% | |
| ATACAGGTGGTTTCAGATGC+AGG | + | tig0006327:14600-14619 | Msa1343160:intron | 45.0% | |
| CATCCTTCCTTATGTCTGCA+AGG | + | tig0006327:14769-14788 | Msa1343160:intron | 45.0% | |
| ! | GTGACGCTCATGTTTTGCAA+AGG | + | tig0006327:14801-14820 | Msa1343160:intron | 45.0% |
| ! | TCAGCTTTATGCTGGTGGTT+TGG | + | tig0006327:14883-14902 | Msa1343160:three_prime_UTR | 45.0% |
| !!! | TTTTTTTTTTAATGTTATTT+TGG | + | tig0006327:12754-12773 | Msa1343160:intron | 5.0% |
| GAGCAATCTGGAAATCCCAC+TGG | + | tig0006327:10732-10751 | Msa1343160:CDS | 50.0% | |
| CAAGTACTCACATGGCCAGT+GGG | - | tig0006327:10750-10769 | None:intergenic | 50.0% | |
| ACAAGTACTCACATGGCCAG+TGG | - | tig0006327:10751-10770 | None:intergenic | 50.0% | |
| ! | ACGCCTTTGATCAGAGGTGT+CGG | - | tig0006327:10844-10863 | None:intergenic | 50.0% |
| !! | GTAGTTCATCTGTGGTGGAC+TGG | + | tig0006327:11274-11293 | Msa1343160:intron | 50.0% |
| TGTTCCAGCCGAGATTGTTC+TGG | - | tig0006327:11346-11365 | None:intergenic | 50.0% | |
| TAGGAATACAACTGGCTGCC+AGG | - | tig0006327:11500-11519 | None:intergenic | 50.0% | |
| ! | TCTCTTTACCAGAGAGGTGC+GGG | + | tig0006327:11669-11688 | Msa1343160:intron | 50.0% |
| ACACCTTGTCTGGGTGAGAT+TGG | - | tig0006327:11936-11955 | None:intergenic | 50.0% | |
| GCTGCTGCAATATACCCTGA+TGG | + | tig0006327:12199-12218 | Msa1343160:CDS | 50.0% | |
| CTGTCGGGGGAAAATGAAGA+AGG | - | tig0006327:12717-12736 | None:intergenic | 50.0% | |
| ATTTGAGGGGATGGGGATTC+AGG | + | tig0006327:13036-13055 | Msa1343160:intron | 50.0% | |
| TTTGAGGGGATGGGGATTCA+GGG | + | tig0006327:13037-13056 | Msa1343160:intron | 50.0% | |
| CCATTTGGTCCATGCTCTAG+CGG | - | tig0006327:13156-13175 | None:intergenic | 50.0% | |
| CGCTAGAGCATGGACCAAAT+GGG | + | tig0006327:13154-13173 | Msa1343160:CDS | 50.0% | |
| TAAGAGCCCCTCGCTTTCTT+AGG | + | tig0006327:13748-13767 | Msa1343160:intron | 50.0% | |
| TATCGACACCACAATCGTGC+AGG | + | tig0006327:14272-14291 | Msa1343160:CDS | 50.0% | |
| GATCCCAGGCTGACATCATA+GGG | - | tig0006327:14388-14407 | None:intergenic | 50.0% | |
| AGATCCCAGGCTGACATCAT+AGG | - | tig0006327:14389-14408 | None:intergenic | 50.0% | |
| CCACGCTTTATGAAGATCCC+AGG | - | tig0006327:14402-14421 | None:intergenic | 50.0% | |
| CCTGGGATCTTCATAAAGCG+TGG | + | tig0006327:14399-14418 | Msa1343160:CDS | 50.0% | |
| TCTTCATAAAGCGTGGCCAG+AGG | + | tig0006327:14406-14425 | Msa1343160:CDS | 50.0% | |
| CTTACCCGAAAATCTGCCTC+TGG | - | tig0006327:14425-14444 | None:intergenic | 50.0% | |
| AGCTATGCCTGGTTCATTGG+CGG | - | tig0006327:14631-14650 | None:intergenic | 50.0% | |
| AGCAGCTATGCCTGGTTCAT+TGG | - | tig0006327:14634-14653 | None:intergenic | 50.0% | |
| ACAAGTTCAGCAGCTATGCC+TGG | - | tig0006327:14642-14661 | None:intergenic | 50.0% | |
| AGGCATAGCTGCTGAACTTG+TGG | + | tig0006327:14641-14660 | Msa1343160:CDS | 50.0% | |
| ! | ATCCCAGCTCAGCTTTATGC+TGG | + | tig0006327:14875-14894 | Msa1343160:three_prime_UTR | 50.0% |
| CACCAGCATAAAGCTGAGCT+GGG | - | tig0006327:14880-14899 | None:intergenic | 50.0% | |
| !! | GAGGTGTCGGTGCTACACAA+TGG | - | tig0006327:10831-10850 | None:intergenic | 55.0% |
| ! | GCACCGACACCTCTGATCAA+AGG | + | tig0006327:10838-10857 | Msa1343160:intron | 55.0% |
| CCAGACACGCCTTTGATCAG+AGG | - | tig0006327:10850-10869 | None:intergenic | 55.0% | |
| ! | CCTCTGATCAAAGGCGTGTC+TGG | + | tig0006327:10847-10866 | Msa1343160:intron | 55.0% |
| GATAAGCGGCCCGAGTAATC+AGG | - | tig0006327:11410-11429 | None:intergenic | 55.0% | |
| GTATTCCTACATGGAGGCCC+TGG | + | tig0006327:11511-11530 | Msa1343160:CDS | 55.0% | |
| GGGGAACTTCCCCGAGTAAT+AGG | + | tig0006327:11536-11555 | Msa1343160:CDS | 55.0% | |
| ! | CTCTTTACCAGAGAGGTGCG+GGG | + | tig0006327:11670-11689 | Msa1343160:intron | 55.0% |
| GGCAGGTCATCTTTCACCTC+TGG | + | tig0006327:11787-11806 | Msa1343160:intron | 55.0% | |
| CAGCCAATCTCACCCAGACA+AGG | + | tig0006327:11930-11949 | Msa1343160:CDS | 55.0% | |
| AGGTTACTGGCATCGTCCTC+AGG | + | tig0006327:12125-12144 | Msa1343160:intron | 55.0% | |
| GGTTACTGGCATCGTCCTCA+GGG | + | tig0006327:12126-12145 | Msa1343160:intron | 55.0% | |
| GTTACTGGCATCGTCCTCAG+GGG | + | tig0006327:12127-12146 | Msa1343160:CDS | 55.0% | |
| AGTATGCTGCCGCTAGAGCA+TGG | + | tig0006327:13144-13163 | Msa1343160:intron | 55.0% | |
| CCGCTAGAGCATGGACCAAA+TGG | + | tig0006327:13153-13172 | Msa1343160:CDS | 55.0% | |
| CTGCCCTATGATGTCAGCCT+GGG | + | tig0006327:14382-14401 | Msa1343160:CDS | 55.0% | |
| ! | CGTGGCCAGAGGCAGATTTT+CGG | + | tig0006327:14417-14436 | Msa1343160:CDS | 55.0% |
| ! | GTGGCCAGAGGCAGATTTTC+GGG | + | tig0006327:14418-14437 | Msa1343160:CDS | 55.0% |
| GGACATTCCGCCAATGAACC+AGG | + | tig0006327:14621-14640 | Msa1343160:CDS | 55.0% | |
| CCACCAGCATAAAGCTGAGC+TGG | - | tig0006327:14881-14900 | None:intergenic | 55.0% | |
| ! | CCAGCTCAGCTTTATGCTGG+TGG | + | tig0006327:14878-14897 | Msa1343160:three_prime_UTR | 55.0% |
| TGGGCCAGAACAATCTCGGC+TGG | + | tig0006327:11339-11358 | Msa1343160:intron | 60.0% | |
| TTCCTACATGGAGGCCCTGG+AGG | + | tig0006327:11514-11533 | Msa1343160:CDS | 60.0% | |
| TCCTACATGGAGGCCCTGGA+GGG | + | tig0006327:11515-11534 | Msa1343160:CDS | 60.0% | |
| ! | TGCTTTTCCCCGCACCTCTC+TGG | - | tig0006327:11680-11699 | None:intergenic | 60.0% |
| GCTGCCCTATGATGTCAGCC+TGG | + | tig0006327:14381-14400 | Msa1343160:CDS | 60.0% | |
| CCTACATGGAGGCCCTGGAG+GGG | + | tig0006327:11516-11535 | Msa1343160:CDS | 65.0% | |
| CTACATGGAGGCCCTGGAGG+GGG | + | tig0006327:11517-11536 | Msa1343160:CDS | 65.0% | |
| TCGGGGAAGTTCCCCCTCCA+GGG | - | tig0006327:11531-11550 | None:intergenic | 65.0% | |
| CCCCTCCAGGGCCTCCATGT+AGG | - | tig0006327:11519-11538 | None:intergenic | 70.0% | |
| CTCGGGGAAGTTCCCCCTCC+AGG | - | tig0006327:11532-11551 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0006327 | gene | 10260 | 14990 | 10260 | ID=Msa1343160;Name=Msa1343160 |
| tig0006327 | mRNA | 10260 | 14990 | 10260 | ID=Msa1343160-mRNA-1;Parent=Msa1343160;Name=Msa1343160-mRNA-1;_AED=0.11;_eAED=0.11;_QI=44|1|1|1|0.90|0.83|12|250|406 |
| tig0006327 | exon | 10260 | 10436 | 10260 | ID=Msa1343160-mRNA-1:exon:3990;Parent=Msa1343160-mRNA-1 |
| tig0006327 | exon | 10532 | 10758 | 10532 | ID=Msa1343160-mRNA-1:exon:3991;Parent=Msa1343160-mRNA-1 |
| tig0006327 | exon | 11505 | 11603 | 11505 | ID=Msa1343160-mRNA-1:exon:3992;Parent=Msa1343160-mRNA-1 |
| tig0006327 | exon | 11681 | 11791 | 11681 | ID=Msa1343160-mRNA-1:exon:3993;Parent=Msa1343160-mRNA-1 |
| tig0006327 | exon | 11889 | 11951 | 11889 | ID=Msa1343160-mRNA-1:exon:3994;Parent=Msa1343160-mRNA-1 |
| tig0006327 | exon | 12127 | 12220 | 12127 | ID=Msa1343160-mRNA-1:exon:3995;Parent=Msa1343160-mRNA-1 |
| tig0006327 | exon | 12588 | 12685 | 12588 | ID=Msa1343160-mRNA-1:exon:3996;Parent=Msa1343160-mRNA-1 |
| tig0006327 | exon | 13146 | 13247 | 13146 | ID=Msa1343160-mRNA-1:exon:3997;Parent=Msa1343160-mRNA-1 |
| tig0006327 | exon | 14180 | 14293 | 14180 | ID=Msa1343160-mRNA-1:exon:3998;Parent=Msa1343160-mRNA-1 |
| tig0006327 | exon | 14365 | 14439 | 14365 | ID=Msa1343160-mRNA-1:exon:3999;Parent=Msa1343160-mRNA-1 |
| tig0006327 | exon | 14606 | 14781 | 14606 | ID=Msa1343160-mRNA-1:exon:4000;Parent=Msa1343160-mRNA-1 |
| tig0006327 | exon | 14812 | 14990 | 14812 | ID=Msa1343160-mRNA-1:exon:4001;Parent=Msa1343160-mRNA-1 |
| tig0006327 | five_prime_UTR | 10260 | 10303 | 10260 | ID=Msa1343160-mRNA-1:five_prime_utr;Parent=Msa1343160-mRNA-1 |
| tig0006327 | CDS | 10304 | 10436 | 10304 | ID=Msa1343160-mRNA-1:cds;Parent=Msa1343160-mRNA-1 |
| tig0006327 | CDS | 10532 | 10758 | 10532 | ID=Msa1343160-mRNA-1:cds;Parent=Msa1343160-mRNA-1 |
| tig0006327 | CDS | 11505 | 11603 | 11505 | ID=Msa1343160-mRNA-1:cds;Parent=Msa1343160-mRNA-1 |
| tig0006327 | CDS | 11681 | 11791 | 11681 | ID=Msa1343160-mRNA-1:cds;Parent=Msa1343160-mRNA-1 |
| tig0006327 | CDS | 11889 | 11951 | 11889 | ID=Msa1343160-mRNA-1:cds;Parent=Msa1343160-mRNA-1 |
| tig0006327 | CDS | 12127 | 12220 | 12127 | ID=Msa1343160-mRNA-1:cds;Parent=Msa1343160-mRNA-1 |
| tig0006327 | CDS | 12588 | 12685 | 12588 | ID=Msa1343160-mRNA-1:cds;Parent=Msa1343160-mRNA-1 |
| tig0006327 | CDS | 13146 | 13247 | 13146 | ID=Msa1343160-mRNA-1:cds;Parent=Msa1343160-mRNA-1 |
| tig0006327 | CDS | 14180 | 14293 | 14180 | ID=Msa1343160-mRNA-1:cds;Parent=Msa1343160-mRNA-1 |
| tig0006327 | CDS | 14365 | 14439 | 14365 | ID=Msa1343160-mRNA-1:cds;Parent=Msa1343160-mRNA-1 |
| tig0006327 | CDS | 14606 | 14710 | 14606 | ID=Msa1343160-mRNA-1:cds;Parent=Msa1343160-mRNA-1 |
| tig0006327 | three_prime_UTR | 14711 | 14781 | 14711 | ID=Msa1343160-mRNA-1:three_prime_utr;Parent=Msa1343160-mRNA-1 |
| tig0006327 | three_prime_UTR | 14812 | 14990 | 14812 | ID=Msa1343160-mRNA-1:three_prime_utr;Parent=Msa1343160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
