Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0190770 | GAU34500.1 | 91.525 | 177 | 13 | 2 | 1 | 176 | 1 | 176 | 2.93e-113 | 329 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0190770 | sp|O81898|DEAL2_ARATH | 65.031 | 163 | 56 | 1 | 1 | 163 | 1 | 162 | 1.07e-77 | 232 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0190770 | A0A2Z6NDN2 | 91.525 | 177 | 13 | 2 | 1 | 176 | 1 | 176 | 1.40e-113 | 329 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0190690 | Msa0190770 | 0.808279 | 3.349215e-50 | -8.615850e-47 |
| Msa0190770 | Msa0311420 | 0.814600 | 1.418805e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0190770 | MtrunA17_Chr2g0280491 | 94.915 | 177 | 8 | 1 | 1 | 177 | 1 | 176 | 2.89e-113 | 319 |
| Msa0190770 | MtrunA17_Chr4g0049001 | 73.333 | 165 | 43 | 1 | 1 | 165 | 1 | 164 | 7.15e-90 | 259 |
| Msa0190770 | MtrunA17_Chr2g0323081 | 60.377 | 159 | 62 | 1 | 1 | 159 | 1 | 158 | 3.11e-69 | 207 |
| Msa0190770 | MtrunA17_Chr4g0023621 | 57.862 | 159 | 66 | 1 | 1 | 159 | 1 | 158 | 2.17e-67 | 202 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0190770 | AT4G21310.1 | 65.031 | 163 | 56 | 1 | 1 | 163 | 1 | 162 | 1.08e-78 | 232 |
| Msa0190770 | AT2G32280.1 | 52.439 | 164 | 77 | 1 | 1 | 164 | 1 | 163 | 3.06e-65 | 197 |
| Msa0190770 | AT2G32280.2 | 52.439 | 164 | 77 | 1 | 1 | 164 | 1 | 163 | 3.06e-65 | 197 |
| Msa0190770 | AT4G21310.2 | 64.800 | 125 | 43 | 1 | 39 | 163 | 1 | 124 | 3.82e-58 | 178 |
| Msa0190770 | AT1G11500.1 | 43.243 | 185 | 93 | 4 | 1 | 175 | 1 | 183 | 3.79e-45 | 147 |
| Msa0190770 | AT1G11500.3 | 43.243 | 185 | 93 | 4 | 1 | 175 | 6 | 188 | 4.40e-45 | 147 |
| Msa0190770 | AT1G11500.2 | 48.507 | 134 | 64 | 3 | 45 | 175 | 24 | 155 | 2.87e-37 | 126 |
| Msa0190770 | AT1G05291.1 | 35.714 | 154 | 87 | 5 | 12 | 160 | 23 | 169 | 1.11e-17 | 77.4 |
Find 43 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATTCTCCATGCTAATTAT+AGG | 0.246080 | 2_1:-6284244 | Msa0190770:CDS |
| CCATGACAAGTATGCAAATA+AGG | 0.285775 | 2_1:+6285178 | None:intergenic |
| TAAGAGCTGCAAGTCCTAAT+TGG | 0.301626 | 2_1:+6284833 | None:intergenic |
| ATGGCGATTCCTTTAGTAAT+AGG | 0.303595 | 2_1:+6285219 | None:intergenic |
| GTGGGATATTATTTAATCAT+AGG | 0.307143 | 2_1:-6284189 | Msa0190770:CDS |
| AGCCATCAAGCTTTCCAATT+AGG | 0.307387 | 2_1:-6284847 | Msa0190770:CDS |
| AAAGAGGTATATCATGTTAA+TGG | 0.317330 | 2_1:+6285252 | None:intergenic |
| AATCATAGGTTTCTATTCAT+AGG | 0.343021 | 2_1:-6284175 | Msa0190770:CDS |
| GCAAGCAATTAGCAACGTTT+TGG | 0.364038 | 2_1:+6284016 | None:intergenic |
| TCAAATATCCACATCTTCAT+AGG | 0.374996 | 2_1:+6284883 | None:intergenic |
| GATATTGTTGCAGGCATACT+TGG | 0.378516 | 2_1:-6285150 | Msa0190770:CDS |
| CATATAATTGCTAACTTGCT+TGG | 0.379275 | 2_1:-6284793 | Msa0190770:CDS |
| TTCTTCTCTTCTGGTGGCTG+TGG | 0.416591 | 2_1:+6284099 | None:intergenic |
| GTCCTAATTGGAAAGCTTGA+TGG | 0.422083 | 2_1:+6284845 | None:intergenic |
| AGCCACAGATAATTGTCTAT+TGG | 0.431607 | 2_1:+6284723 | None:intergenic |
| CCTTATTTGCATACTTGTCA+TGG | 0.434363 | 2_1:-6285178 | Msa0190770:CDS |
| TTCAGAAGCACTTGTAATGA+AGG | 0.456251 | 2_1:+6285298 | None:intergenic |
| TGGCTGTAGCTGATCTATAT+TGG | 0.456295 | 2_1:+6284743 | None:intergenic |
| TGTCACAAACCTATTACTAA+AGG | 0.464068 | 2_1:-6285228 | Msa0190770:five_prime_UTR |
| AATTAATTAAGTTCGTCTTA+CGG | 0.469054 | 2_1:+6284048 | None:intergenic |
| AGATGTGGATATTTGATTGT+AGG | 0.471306 | 2_1:-6284876 | Msa0190770:CDS |
| TTCGTCTTACGGCGGGCCCT+AGG | 0.476894 | 2_1:+6284059 | None:intergenic |
| AATTGGAAAGCTTGATGGCT+AGG | 0.481649 | 2_1:+6284850 | None:intergenic |
| ATGGTGATGGATATTGTTGC+AGG | 0.483198 | 2_1:-6285159 | Msa0190770:CDS |
| AATAGGTTTGTGACATAAAG+AGG | 0.493536 | 2_1:+6285236 | None:intergenic |
| CCACCAGAAGAGAAGAAAAG+AGG | 0.504369 | 2_1:-6284093 | Msa0190770:CDS |
| GCTGTGGCAGAAACATAATA+AGG | 0.508299 | 2_1:+6284115 | None:intergenic |
| TTGCATACTTGTCATGGTGA+TGG | 0.517259 | 2_1:-6285172 | Msa0190770:CDS |
| AAGGAACAGTGAACAATCCA+TGG | 0.529237 | 2_1:+6284134 | None:intergenic |
| ATAATTGCTAACTTGCTTGG+AGG | 0.540663 | 2_1:-6284790 | Msa0190770:CDS |
| AATTAAGTTCGTCTTACGGC+GGG | 0.540771 | 2_1:+6284052 | None:intergenic |
| AAGAGGCAACTAGAAAGCCT+AGG | 0.559095 | 2_1:-6284076 | Msa0190770:CDS |
| AGGAGAAGCCTATGAAGATG+TGG | 0.600242 | 2_1:-6284891 | Msa0190770:CDS |
| CATAGGTTTCTATTCATAGG+TGG | 0.600579 | 2_1:-6284172 | Msa0190770:CDS |
| TAATGTTCCTATAATTAGCA+TGG | 0.602881 | 2_1:+6284237 | None:intergenic |
| AGAGGCAACTAGAAAGCCTA+GGG | 0.615285 | 2_1:-6284075 | Msa0190770:CDS |
| AGCAGAGACAGCTCAAAACA+AGG | 0.628235 | 2_1:-6285121 | Msa0190770:intron |
| TCAAGATCAAGAAAATCATG+TGG | 0.628272 | 2_1:-6284208 | Msa0190770:CDS |
| TGTAATTTACAGGGTCGTGA+TGG | 0.632393 | 2_1:-6284272 | Msa0190770:intron |
| CAAGATCAAGAAAATCATGT+GGG | 0.641973 | 2_1:-6284207 | Msa0190770:CDS |
| AGCCAATAGACAATTATCTG+TGG | 0.670969 | 2_1:-6284725 | Msa0190770:CDS |
| TATTACTAAAGGAATCGCCA+TGG | 0.681550 | 2_1:-6285217 | Msa0190770:exon |
| TAATTAAGTTCGTCTTACGG+CGG | 0.688508 | 2_1:+6284051 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGATATTTATGTAAAATTC+TGG | + | chr2_1:6284680-6284699 | None:intergenic | 15.0% |
| !! | AAGATATTTATGTAAAATTC+TGG | + | chr2_1:6284680-6284699 | None:intergenic | 15.0% |
| !! | AAAAATAAAGCTGATTGAAA+AGG | + | chr2_1:6284314-6284333 | None:intergenic | 20.0% |
| !! | AATTAAAACACAAATCATGA+TGG | - | chr2_1:6284827-6284846 | Msa0190770:CDS | 20.0% |
| !! | TGCAAAAAATTAAGAATAAG+AGG | + | chr2_1:6284853-6284872 | None:intergenic | 20.0% |
| !!! | CTTATTCTTAATTTTTTGCA+TGG | - | chr2_1:6284853-6284872 | Msa0190770:CDS | 20.0% |
| !! | TATGAATAACGTTTAAGAAT+AGG | + | chr2_1:6284900-6284919 | None:intergenic | 20.0% |
| !! | AATTAATTAAGTTCGTCTTA+CGG | + | chr2_1:6285203-6285222 | None:intergenic | 20.0% |
| !! | AAAAATAAAGCTGATTGAAA+AGG | + | chr2_1:6284314-6284333 | None:intergenic | 20.0% |
| !! | AATTAAAACACAAATCATGA+TGG | - | chr2_1:6284827-6284846 | Msa0190770:CDS | 20.0% |
| !! | TGCAAAAAATTAAGAATAAG+AGG | + | chr2_1:6284853-6284872 | None:intergenic | 20.0% |
| !!! | CTTATTCTTAATTTTTTGCA+TGG | - | chr2_1:6284853-6284872 | Msa0190770:CDS | 20.0% |
| !! | TATGAATAACGTTTAAGAAT+AGG | + | chr2_1:6284900-6284919 | None:intergenic | 20.0% |
| !! | AATTAATTAAGTTCGTCTTA+CGG | + | chr2_1:6285203-6285222 | None:intergenic | 20.0% |
| !! | AAAGAGGTATATCATGTTAA+TGG | + | chr2_1:6283999-6284018 | None:intergenic | 25.0% |
| !!! | TTTTTTATTTGCCTAGCTAT+TGG | - | chr2_1:6284588-6284607 | Msa0190770:intron | 25.0% |
| !!! | TTAATTTTTTGCATGGAAGT+TGG | - | chr2_1:6284860-6284879 | Msa0190770:CDS | 25.0% |
| ! | TATCTATGTGTGTAATTTAC+AGG | - | chr2_1:6284966-6284985 | Msa0190770:intron | 25.0% |
| ! | ATCTATGTGTGTAATTTACA+GGG | - | chr2_1:6284967-6284986 | Msa0190770:intron | 25.0% |
| ! | TAATGTTCCTATAATTAGCA+TGG | + | chr2_1:6285014-6285033 | None:intergenic | 25.0% |
| ! | GTGGGATATTATTTAATCAT+AGG | - | chr2_1:6285059-6285078 | Msa0190770:intron | 25.0% |
| ! | AATCATAGGTTTCTATTCAT+AGG | - | chr2_1:6285073-6285092 | Msa0190770:intron | 25.0% |
| !! | AAAGAGGTATATCATGTTAA+TGG | + | chr2_1:6283999-6284018 | None:intergenic | 25.0% |
| !!! | TTTTTTATTTGCCTAGCTAT+TGG | - | chr2_1:6284588-6284607 | Msa0190770:intron | 25.0% |
| !!! | TTAATTTTTTGCATGGAAGT+TGG | - | chr2_1:6284860-6284879 | Msa0190770:CDS | 25.0% |
| ! | TATCTATGTGTGTAATTTAC+AGG | - | chr2_1:6284966-6284985 | Msa0190770:intron | 25.0% |
| ! | ATCTATGTGTGTAATTTACA+GGG | - | chr2_1:6284967-6284986 | Msa0190770:intron | 25.0% |
| ! | TAATGTTCCTATAATTAGCA+TGG | + | chr2_1:6285014-6285033 | None:intergenic | 25.0% |
| ! | GTGGGATATTATTTAATCAT+AGG | - | chr2_1:6285059-6285078 | Msa0190770:intron | 25.0% |
| ! | AATCATAGGTTTCTATTCAT+AGG | - | chr2_1:6285073-6285092 | Msa0190770:intron | 25.0% |
| AATAGGTTTGTGACATAAAG+AGG | + | chr2_1:6284015-6284034 | None:intergenic | 30.0% | |
| TGTCACAAACCTATTACTAA+AGG | - | chr2_1:6284020-6284039 | Msa0190770:three_prime_UTR | 30.0% | |
| ! | AATAAGGAAGCCATAGTTTT+TGG | + | chr2_1:6284057-6284076 | None:intergenic | 30.0% |
| CTATTTAGACTTAGACACTT+TGG | - | chr2_1:6284160-6284179 | Msa0190770:CDS | 30.0% | |
| ! | ACGTAACTTTTGCAAAATCA+TGG | + | chr2_1:6284239-6284258 | None:intergenic | 30.0% |
| ! | CTCTTTTGCAATATGAAAAC+AGG | - | chr2_1:6284337-6284356 | Msa0190770:intron | 30.0% |
| TCAAATATCCACATCTTCAT+AGG | + | chr2_1:6284368-6284387 | None:intergenic | 30.0% | |
| AGATGTGGATATTTGATTGT+AGG | - | chr2_1:6284372-6284391 | Msa0190770:intron | 30.0% | |
| !! | CATATAATTGCTAACTTGCT+TGG | - | chr2_1:6284455-6284474 | Msa0190770:intron | 30.0% |
| TGAAATAAATGCACACATCA+TGG | - | chr2_1:6284629-6284648 | Msa0190770:intron | 30.0% | |
| !! | ATTCAAGTTGAGAAGCAATT+TGG | + | chr2_1:6284810-6284829 | None:intergenic | 30.0% |
| TCAAGATCAAGAAAATCATG+TGG | - | chr2_1:6285040-6285059 | Msa0190770:intron | 30.0% | |
| CAAGATCAAGAAAATCATGT+GGG | - | chr2_1:6285041-6285060 | Msa0190770:intron | 30.0% | |
| AATAGGTTTGTGACATAAAG+AGG | + | chr2_1:6284015-6284034 | None:intergenic | 30.0% | |
| TGTCACAAACCTATTACTAA+AGG | - | chr2_1:6284020-6284039 | Msa0190770:three_prime_UTR | 30.0% | |
| ! | AATAAGGAAGCCATAGTTTT+TGG | + | chr2_1:6284057-6284076 | None:intergenic | 30.0% |
| CTATTTAGACTTAGACACTT+TGG | - | chr2_1:6284160-6284179 | Msa0190770:CDS | 30.0% | |
| ! | ACGTAACTTTTGCAAAATCA+TGG | + | chr2_1:6284239-6284258 | None:intergenic | 30.0% |
| ! | CTCTTTTGCAATATGAAAAC+AGG | - | chr2_1:6284337-6284356 | Msa0190770:intron | 30.0% |
| TCAAATATCCACATCTTCAT+AGG | + | chr2_1:6284368-6284387 | None:intergenic | 30.0% | |
| AGATGTGGATATTTGATTGT+AGG | - | chr2_1:6284372-6284391 | Msa0190770:intron | 30.0% | |
| !! | CATATAATTGCTAACTTGCT+TGG | - | chr2_1:6284455-6284474 | Msa0190770:intron | 30.0% |
| TGAAATAAATGCACACATCA+TGG | - | chr2_1:6284629-6284648 | Msa0190770:intron | 30.0% | |
| !! | ATTCAAGTTGAGAAGCAATT+TGG | + | chr2_1:6284810-6284829 | None:intergenic | 30.0% |
| TCAAGATCAAGAAAATCATG+TGG | - | chr2_1:6285040-6285059 | Msa0190770:intron | 30.0% | |
| CAAGATCAAGAAAATCATGT+GGG | - | chr2_1:6285041-6285060 | Msa0190770:intron | 30.0% | |
| ATGGCGATTCCTTTAGTAAT+AGG | + | chr2_1:6284032-6284051 | None:intergenic | 35.0% | |
| TATTACTAAAGGAATCGCCA+TGG | - | chr2_1:6284031-6284050 | Msa0190770:three_prime_UTR | 35.0% | |
| CCATGACAAGTATGCAAATA+AGG | + | chr2_1:6284073-6284092 | None:intergenic | 35.0% | |
| ! | CCTTATTTGCATACTTGTCA+TGG | - | chr2_1:6284070-6284089 | Msa0190770:CDS | 35.0% |
| CAAGTGCATGTTTGATGTTA+CGG | + | chr2_1:6284278-6284297 | None:intergenic | 35.0% | |
| !! | ATAATTGCTAACTTGCTTGG+AGG | - | chr2_1:6284458-6284477 | Msa0190770:intron | 35.0% |
| AGCCAATAGACAATTATCTG+TGG | - | chr2_1:6284523-6284542 | Msa0190770:intron | 35.0% | |
| AGCCACAGATAATTGTCTAT+TGG | + | chr2_1:6284528-6284547 | None:intergenic | 35.0% | |
| ! | TGGCTTTTCTCATTTTCTCT+TGG | - | chr2_1:6284543-6284562 | Msa0190770:intron | 35.0% |
| GCATTCTCCATGCTAATTAT+AGG | - | chr2_1:6285004-6285023 | Msa0190770:intron | 35.0% | |
| CATAGGTTTCTATTCATAGG+TGG | - | chr2_1:6285076-6285095 | Msa0190770:intron | 35.0% | |
| TAATTAAGTTCGTCTTACGG+CGG | + | chr2_1:6285200-6285219 | None:intergenic | 35.0% | |
| !! | TTCAGAAGCACTTGTAATGA+AGG | + | chr2_1:6283953-6283972 | None:intergenic | 35.0% |
| ATGGCGATTCCTTTAGTAAT+AGG | + | chr2_1:6284032-6284051 | None:intergenic | 35.0% | |
| TATTACTAAAGGAATCGCCA+TGG | - | chr2_1:6284031-6284050 | Msa0190770:three_prime_UTR | 35.0% | |
| CCATGACAAGTATGCAAATA+AGG | + | chr2_1:6284073-6284092 | None:intergenic | 35.0% | |
| ! | CCTTATTTGCATACTTGTCA+TGG | - | chr2_1:6284070-6284089 | Msa0190770:CDS | 35.0% |
| CAAGTGCATGTTTGATGTTA+CGG | + | chr2_1:6284278-6284297 | None:intergenic | 35.0% | |
| !! | ATAATTGCTAACTTGCTTGG+AGG | - | chr2_1:6284458-6284477 | Msa0190770:intron | 35.0% |
| AGCCAATAGACAATTATCTG+TGG | - | chr2_1:6284523-6284542 | Msa0190770:intron | 35.0% | |
| AGCCACAGATAATTGTCTAT+TGG | + | chr2_1:6284528-6284547 | None:intergenic | 35.0% | |
| ! | TGGCTTTTCTCATTTTCTCT+TGG | - | chr2_1:6284543-6284562 | Msa0190770:intron | 35.0% |
| GCATTCTCCATGCTAATTAT+AGG | - | chr2_1:6285004-6285023 | Msa0190770:intron | 35.0% | |
| CATAGGTTTCTATTCATAGG+TGG | - | chr2_1:6285076-6285095 | Msa0190770:intron | 35.0% | |
| TAATTAAGTTCGTCTTACGG+CGG | + | chr2_1:6285200-6285219 | None:intergenic | 35.0% | |
| TTGCATACTTGTCATGGTGA+TGG | - | chr2_1:6284076-6284095 | Msa0190770:CDS | 40.0% | |
| !! | ATGGTGATGGATATTGTTGC+AGG | - | chr2_1:6284089-6284108 | Msa0190770:CDS | 40.0% |
| GATATTGTTGCAGGCATACT+TGG | - | chr2_1:6284098-6284117 | Msa0190770:CDS | 40.0% | |
| ! | AATTGGAAAGCTTGATGGCT+AGG | + | chr2_1:6284401-6284420 | None:intergenic | 40.0% |
| AGCCATCAAGCTTTCCAATT+AGG | - | chr2_1:6284401-6284420 | Msa0190770:intron | 40.0% | |
| GTCCTAATTGGAAAGCTTGA+TGG | + | chr2_1:6284406-6284425 | None:intergenic | 40.0% | |
| TAAGAGCTGCAAGTCCTAAT+TGG | + | chr2_1:6284418-6284437 | None:intergenic | 40.0% | |
| TGGCTGTAGCTGATCTATAT+TGG | + | chr2_1:6284508-6284527 | None:intergenic | 40.0% | |
| TTTCAAGATGTGTGACCACT+AGG | + | chr2_1:6284614-6284633 | None:intergenic | 40.0% | |
| ACCACTAGATTGTAACAACG+AGG | - | chr2_1:6284709-6284728 | Msa0190770:CDS | 40.0% | |
| TCCTCGTTGTTACAATCTAG+TGG | + | chr2_1:6284713-6284732 | None:intergenic | 40.0% | |
| GTGCATTAGACAAACGTGTT+TGG | + | chr2_1:6284772-6284791 | None:intergenic | 40.0% | |
| TGTAATTTACAGGGTCGTGA+TGG | - | chr2_1:6284976-6284995 | Msa0190770:intron | 40.0% | |
| ! | GGCATTTTGTGTTTCATCCA+TGG | - | chr2_1:6285097-6285116 | Msa0190770:intron | 40.0% |
| AAGGAACAGTGAACAATCCA+TGG | + | chr2_1:6285117-6285136 | None:intergenic | 40.0% | |
| GCTGTGGCAGAAACATAATA+AGG | + | chr2_1:6285136-6285155 | None:intergenic | 40.0% | |
| ! | TTGCCTCTTTTCTTCTCTTC+TGG | + | chr2_1:6285161-6285180 | None:intergenic | 40.0% |
| AATTAAGTTCGTCTTACGGC+GGG | + | chr2_1:6285199-6285218 | None:intergenic | 40.0% | |
| ! | GCAAGCAATTAGCAACGTTT+TGG | + | chr2_1:6285235-6285254 | None:intergenic | 40.0% |
| TTGCATACTTGTCATGGTGA+TGG | - | chr2_1:6284076-6284095 | Msa0190770:CDS | 40.0% | |
| !! | ATGGTGATGGATATTGTTGC+AGG | - | chr2_1:6284089-6284108 | Msa0190770:CDS | 40.0% |
| GATATTGTTGCAGGCATACT+TGG | - | chr2_1:6284098-6284117 | Msa0190770:CDS | 40.0% | |
| ! | AATTGGAAAGCTTGATGGCT+AGG | + | chr2_1:6284401-6284420 | None:intergenic | 40.0% |
| AGCCATCAAGCTTTCCAATT+AGG | - | chr2_1:6284401-6284420 | Msa0190770:intron | 40.0% | |
| GTCCTAATTGGAAAGCTTGA+TGG | + | chr2_1:6284406-6284425 | None:intergenic | 40.0% | |
| TAAGAGCTGCAAGTCCTAAT+TGG | + | chr2_1:6284418-6284437 | None:intergenic | 40.0% | |
| TGGCTGTAGCTGATCTATAT+TGG | + | chr2_1:6284508-6284527 | None:intergenic | 40.0% | |
| TTTCAAGATGTGTGACCACT+AGG | + | chr2_1:6284614-6284633 | None:intergenic | 40.0% | |
| ACCACTAGATTGTAACAACG+AGG | - | chr2_1:6284709-6284728 | Msa0190770:CDS | 40.0% | |
| TCCTCGTTGTTACAATCTAG+TGG | + | chr2_1:6284713-6284732 | None:intergenic | 40.0% | |
| GTGCATTAGACAAACGTGTT+TGG | + | chr2_1:6284772-6284791 | None:intergenic | 40.0% | |
| TGTAATTTACAGGGTCGTGA+TGG | - | chr2_1:6284976-6284995 | Msa0190770:intron | 40.0% | |
| ! | GGCATTTTGTGTTTCATCCA+TGG | - | chr2_1:6285097-6285116 | Msa0190770:intron | 40.0% |
| AAGGAACAGTGAACAATCCA+TGG | + | chr2_1:6285117-6285136 | None:intergenic | 40.0% | |
| GCTGTGGCAGAAACATAATA+AGG | + | chr2_1:6285136-6285155 | None:intergenic | 40.0% | |
| ! | TTGCCTCTTTTCTTCTCTTC+TGG | + | chr2_1:6285161-6285180 | None:intergenic | 40.0% |
| AATTAAGTTCGTCTTACGGC+GGG | + | chr2_1:6285199-6285218 | None:intergenic | 40.0% | |
| ! | GCAAGCAATTAGCAACGTTT+TGG | + | chr2_1:6285235-6285254 | None:intergenic | 40.0% |
| ATCGCCATGGCCAAAAACTA+TGG | - | chr2_1:6284044-6284063 | Msa0190770:exon | 45.0% | |
| !!! | GAAGCCATAGTTTTTGGCCA+TGG | + | chr2_1:6284051-6284070 | None:intergenic | 45.0% |
| AGCAGAGACAGCTCAAAACA+AGG | - | chr2_1:6284127-6284146 | Msa0190770:CDS | 45.0% | |
| AGGAGAAGCCTATGAAGATG+TGG | - | chr2_1:6284357-6284376 | Msa0190770:intron | 45.0% | |
| GCACACATCATGGACAAATG+TGG | - | chr2_1:6284639-6284658 | Msa0190770:intron | 45.0% | |
| ! | CCTCTTTTCTTCTCTTCTGG+TGG | + | chr2_1:6285158-6285177 | None:intergenic | 45.0% |
| CCACCAGAAGAGAAGAAAAG+AGG | - | chr2_1:6285155-6285174 | Msa0190770:CDS | 45.0% | |
| AAGAGGCAACTAGAAAGCCT+AGG | - | chr2_1:6285172-6285191 | Msa0190770:CDS | 45.0% | |
| AGAGGCAACTAGAAAGCCTA+GGG | - | chr2_1:6285173-6285192 | Msa0190770:CDS | 45.0% | |
| ATCGCCATGGCCAAAAACTA+TGG | - | chr2_1:6284044-6284063 | Msa0190770:exon | 45.0% | |
| !!! | GAAGCCATAGTTTTTGGCCA+TGG | + | chr2_1:6284051-6284070 | None:intergenic | 45.0% |
| AGCAGAGACAGCTCAAAACA+AGG | - | chr2_1:6284127-6284146 | Msa0190770:CDS | 45.0% | |
| AGGAGAAGCCTATGAAGATG+TGG | - | chr2_1:6284357-6284376 | Msa0190770:intron | 45.0% | |
| GCACACATCATGGACAAATG+TGG | - | chr2_1:6284639-6284658 | Msa0190770:intron | 45.0% | |
| ! | CCTCTTTTCTTCTCTTCTGG+TGG | + | chr2_1:6285158-6285177 | None:intergenic | 45.0% |
| CCACCAGAAGAGAAGAAAAG+AGG | - | chr2_1:6285155-6285174 | Msa0190770:CDS | 45.0% | |
| AAGAGGCAACTAGAAAGCCT+AGG | - | chr2_1:6285172-6285191 | Msa0190770:CDS | 45.0% | |
| AGAGGCAACTAGAAAGCCTA+GGG | - | chr2_1:6285173-6285192 | Msa0190770:CDS | 45.0% | |
| !!! | AAATAAAAAAATAAATGTTT+TGG | + | chr2_1:6284578-6284597 | None:intergenic | 5.0% |
| !!! | AAATAAAAAAATAAATGTTT+TGG | + | chr2_1:6284578-6284597 | None:intergenic | 5.0% |
| ! | TTGCCTAGCTATTGGCCTAG+TGG | - | chr2_1:6284596-6284615 | Msa0190770:intron | 50.0% |
| TGACCACTAGGCCAATAGCT+AGG | + | chr2_1:6284602-6284621 | None:intergenic | 50.0% | |
| TTCTTCTCTTCTGGTGGCTG+TGG | + | chr2_1:6285152-6285171 | None:intergenic | 50.0% | |
| ! | TTGCCTAGCTATTGGCCTAG+TGG | - | chr2_1:6284596-6284615 | Msa0190770:intron | 50.0% |
| TGACCACTAGGCCAATAGCT+AGG | + | chr2_1:6284602-6284621 | None:intergenic | 50.0% | |
| TTCTTCTCTTCTGGTGGCTG+TGG | + | chr2_1:6285152-6285171 | None:intergenic | 50.0% | |
| TTCGTCTTACGGCGGGCCCT+AGG | + | chr2_1:6285192-6285211 | None:intergenic | 65.0% | |
| TTCGTCTTACGGCGGGCCCT+AGG | + | chr2_1:6285192-6285211 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 6283951 | 6285319 | 6283951 | ID=Msa0190770;Name=Msa0190770 |
| chr2_1 | mRNA | 6283951 | 6285319 | 6283951 | ID=Msa0190770-mRNA-1;Parent=Msa0190770;Name=Msa0190770-mRNA-1;_AED=0.06;_eAED=0.06;_QI=99|1|1|1|1|1|3|103|177 |
| chr2_1 | exon | 6283951 | 6284282 | 6283951 | ID=Msa0190770-mRNA-1:exon:2821;Parent=Msa0190770-mRNA-1 |
| chr2_1 | exon | 6284706 | 6284911 | 6284706 | ID=Msa0190770-mRNA-1:exon:2820;Parent=Msa0190770-mRNA-1 |
| chr2_1 | exon | 6285122 | 6285319 | 6285122 | ID=Msa0190770-mRNA-1:exon:2819;Parent=Msa0190770-mRNA-1 |
| chr2_1 | five_prime_UTR | 6285221 | 6285319 | 6285221 | ID=Msa0190770-mRNA-1:five_prime_utr;Parent=Msa0190770-mRNA-1 |
| chr2_1 | CDS | 6285122 | 6285220 | 6285122 | ID=Msa0190770-mRNA-1:cds;Parent=Msa0190770-mRNA-1 |
| chr2_1 | CDS | 6284706 | 6284911 | 6284706 | ID=Msa0190770-mRNA-1:cds;Parent=Msa0190770-mRNA-1 |
| chr2_1 | CDS | 6284054 | 6284282 | 6284054 | ID=Msa0190770-mRNA-1:cds;Parent=Msa0190770-mRNA-1 |
| chr2_1 | three_prime_UTR | 6283951 | 6284053 | 6283951 | ID=Msa0190770-mRNA-1:three_prime_utr;Parent=Msa0190770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
