Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0311420 | XP_003593382.3 | 95.480 | 177 | 7 | 1 | 1 | 177 | 18 | 193 | 3.08e-119 | 345 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0311420 | sp|O81898|DEAL2_ARATH | 65.031 | 163 | 56 | 1 | 1 | 163 | 1 | 162 | 1.62e-77 | 231 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0094850 | Msa0311420 | 0.818581 | 1.819321e-52 | -8.615850e-47 |
| Msa0142200 | Msa0311420 | 0.813666 | 2.280837e-51 | -8.615850e-47 |
| Msa0173660 | Msa0311420 | 0.801005 | 1.104025e-48 | -8.615850e-47 |
| Msa0173990 | Msa0311420 | 0.805979 | 1.027411e-49 | -8.615850e-47 |
| Msa0190690 | Msa0311420 | 0.982009 | 5.308826e-154 | -8.615850e-47 |
| Msa0190770 | Msa0311420 | 0.814600 | 1.418805e-51 | -8.615850e-47 |
| Msa0205850 | Msa0311420 | 0.814911 | 1.210411e-51 | -8.615850e-47 |
| Msa0220580 | Msa0311420 | 0.805285 | 1.436984e-49 | -8.615850e-47 |
| Msa0227470 | Msa0311420 | 0.809736 | 1.633161e-50 | -8.615850e-47 |
| Msa0262510 | Msa0311420 | 0.805906 | 1.064599e-49 | -8.615850e-47 |
| Msa0276920 | Msa0311420 | 0.808222 | 3.443933e-50 | -8.615850e-47 |
| Msa0287310 | Msa0311420 | 0.800312 | 1.529148e-48 | -8.615850e-47 |
| Msa0306300 | Msa0311420 | 0.818973 | 1.481795e-52 | -8.615850e-47 |
| Msa0311420 | Msa0325850 | 0.806941 | 6.441020e-50 | -8.615850e-47 |
| Msa0311420 | Msa0335040 | 0.807024 | 6.185411e-50 | -8.615850e-47 |
| Msa0311420 | Msa0341910 | 0.814742 | 1.319234e-51 | -8.615850e-47 |
| Msa0311420 | Msa0363350 | 0.815224 | 1.031664e-51 | -8.615850e-47 |
| Msa0311420 | Msa0410650 | 0.804285 | 2.324727e-49 | -8.615850e-47 |
| Msa0311420 | Msa0417880 | 0.803468 | 3.436651e-49 | -8.615850e-47 |
| Msa0311420 | Msa0452920 | 0.816052 | 6.747162e-52 | -8.615850e-47 |
| Msa0311420 | Msa0452960 | 0.803342 | 3.648840e-49 | -8.615850e-47 |
| Msa0311420 | Msa0470690 | 0.804756 | 1.854184e-49 | -8.615850e-47 |
| Msa0311420 | Msa0484780 | 0.829863 | 4.057025e-55 | -8.615850e-47 |
| Msa0311420 | Msa0507680 | 0.807141 | 5.842041e-50 | -8.615850e-47 |
| Msa0311420 | Msa0682550 | 0.809151 | 2.180658e-50 | -8.615850e-47 |
| Msa0311420 | Msa0693380 | 0.808718 | 2.698894e-50 | -8.615850e-47 |
| Msa0311420 | Msa0796160 | 0.808110 | 3.637439e-50 | -8.615850e-47 |
| Msa0311420 | Msa0824660 | 0.827921 | 1.197964e-54 | -8.615850e-47 |
| Msa0311420 | Msa0833760 | 0.806036 | 9.995717e-50 | -8.615850e-47 |
| Msa0311420 | Msa0844240 | 0.813853 | 2.074325e-51 | -8.615850e-47 |
| Msa0311420 | Msa0979010 | 0.806978 | 6.324756e-50 | -8.615850e-47 |
| Msa0311420 | Msa1031930 | 0.825641 | 4.196824e-54 | -8.615850e-47 |
| Msa0311420 | Msa1063950 | 0.801431 | 9.035806e-49 | -8.615850e-47 |
| Msa0311420 | Msa1082500 | 0.823830 | 1.121549e-53 | -8.615850e-47 |
| Msa0311420 | Msa1085200 | 0.802496 | 5.457539e-49 | -8.615850e-47 |
| Msa0311420 | Msa1108160 | 0.808500 | 3.004507e-50 | -8.615850e-47 |
| Msa0311420 | Msa1132700 | 0.800486 | 1.408920e-48 | -8.615850e-47 |
| Msa0311420 | Msa1152510 | 0.814157 | 1.777434e-51 | -8.615850e-47 |
| Msa0311420 | Msa1355800 | 0.811901 | 5.553165e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0311420 | MtrunA17_Chr2g0280491 | 95.480 | 177 | 7 | 1 | 1 | 177 | 1 | 176 | 3.75e-123 | 344 |
| Msa0311420 | MtrunA17_Chr4g0049001 | 73.333 | 165 | 43 | 1 | 1 | 165 | 1 | 164 | 9.41e-90 | 259 |
| Msa0311420 | MtrunA17_Chr2g0323081 | 60.377 | 159 | 62 | 1 | 1 | 159 | 1 | 158 | 5.27e-69 | 206 |
| Msa0311420 | MtrunA17_Chr4g0023621 | 57.233 | 159 | 67 | 1 | 1 | 159 | 1 | 158 | 5.10e-67 | 201 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0311420 | AT4G21310.1 | 65.031 | 163 | 56 | 1 | 1 | 163 | 1 | 162 | 1.64e-78 | 231 |
| Msa0311420 | AT2G32280.1 | 52.439 | 164 | 77 | 1 | 1 | 164 | 1 | 163 | 4.16e-65 | 197 |
| Msa0311420 | AT2G32280.2 | 52.439 | 164 | 77 | 1 | 1 | 164 | 1 | 163 | 4.16e-65 | 197 |
| Msa0311420 | AT4G21310.2 | 64.800 | 125 | 43 | 1 | 39 | 163 | 1 | 124 | 5.91e-58 | 178 |
| Msa0311420 | AT1G11500.1 | 43.243 | 185 | 93 | 4 | 1 | 175 | 1 | 183 | 5.37e-45 | 147 |
| Msa0311420 | AT1G11500.3 | 43.243 | 185 | 93 | 4 | 1 | 175 | 6 | 188 | 5.96e-45 | 147 |
| Msa0311420 | AT1G11500.2 | 48.507 | 134 | 64 | 3 | 45 | 175 | 24 | 155 | 3.46e-37 | 126 |
| Msa0311420 | AT1G05291.1 | 35.065 | 154 | 88 | 5 | 12 | 160 | 23 | 169 | 3.18e-17 | 75.9 |
Find 44 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATTCTCCATGCTAATTAT+AGG | 0.246080 | 2_4:+6302557 | Msa0311420:CDS |
| CCATGACAAGTATGCAAATA+AGG | 0.285775 | 2_4:-6301621 | None:intergenic |
| TAAGAGCTGCAAGTCCTAAT+TGG | 0.301626 | 2_4:-6301966 | None:intergenic |
| ATGGCGATTCCTTTAGTAAT+AGG | 0.303595 | 2_4:-6301580 | None:intergenic |
| AGCCATCAAGCTTTCCAATT+AGG | 0.307387 | 2_4:+6301952 | Msa0311420:CDS |
| AAAGAGGTATATCATGTTAA+TGG | 0.317330 | 2_4:-6301547 | None:intergenic |
| GCAAGCAATTAGCAACGTTT+TGG | 0.364038 | 2_4:-6302785 | None:intergenic |
| TCAAATATCCACATCTTCAT+AGG | 0.374996 | 2_4:-6301916 | None:intergenic |
| GATATTGTTGCAGGCATACT+TGG | 0.378516 | 2_4:+6301649 | Msa0311420:CDS |
| CATATAATTGCTAACTTGCT+TGG | 0.379275 | 2_4:+6302006 | Msa0311420:CDS |
| AACCATAGGTTTCTATTCAT+AGG | 0.398851 | 2_4:+6302626 | Msa0311420:CDS |
| TTCTTCTCTTCTGGTGGCTG+TGG | 0.416591 | 2_4:-6302702 | None:intergenic |
| GTCCTAATTGGAAAGCTTGA+TGG | 0.422083 | 2_4:-6301954 | None:intergenic |
| AGCCACAGATAATTGTCTAT+TGG | 0.431607 | 2_4:-6302076 | None:intergenic |
| CCTTATTTGCATACTTGTCA+TGG | 0.434363 | 2_4:+6301621 | Msa0311420:CDS |
| TTCAGAAGCACTTGTAATGA+AGG | 0.456251 | 2_4:-6301501 | None:intergenic |
| TGGCTGTAGCTGATCTATAT+TGG | 0.456295 | 2_4:-6302056 | None:intergenic |
| TGTCACAAACCTATTACTAA+AGG | 0.464068 | 2_4:+6301571 | Msa0311420:five_prime_UTR |
| GTGGGATATTATTTAACCAT+AGG | 0.468696 | 2_4:+6302612 | Msa0311420:CDS |
| AATTAATTAAGTTCGTCTTA+CGG | 0.469054 | 2_4:-6302753 | None:intergenic |
| AGATGTGGATATTTGATTGT+AGG | 0.471306 | 2_4:+6301923 | Msa0311420:CDS |
| TTCGTCTTACGGCGGGACCT+AGG | 0.477372 | 2_4:-6302742 | None:intergenic |
| AATTGGAAAGCTTGATGGCT+AGG | 0.481649 | 2_4:-6301949 | None:intergenic |
| ATGGTGATGGATATTGTTGC+AGG | 0.483198 | 2_4:+6301640 | Msa0311420:CDS |
| AATAGGTTTGTGACATAAAG+AGG | 0.493536 | 2_4:-6301563 | None:intergenic |
| CCACCAGAAGAGAAGAAAAG+AGG | 0.504369 | 2_4:+6302708 | Msa0311420:CDS |
| GCTGTGGCAGAAACATAATA+AGG | 0.508299 | 2_4:-6302686 | None:intergenic |
| TTGCATACTTGTCATGGTGA+TGG | 0.517259 | 2_4:+6301627 | Msa0311420:CDS |
| CATGCTAATTATAGGAACAT+TGG | 0.523902 | 2_4:+6302565 | Msa0311420:CDS |
| AAGGAACAGTGAACAATCCA+TGG | 0.529237 | 2_4:-6302667 | None:intergenic |
| ATAATTGCTAACTTGCTTGG+AGG | 0.540663 | 2_4:+6302009 | Msa0311420:CDS |
| CACCTATGAATAGAAACCTA+TGG | 0.554888 | 2_4:-6302628 | None:intergenic |
| AATTAAGTTCGTCTTACGGC+GGG | 0.559164 | 2_4:-6302749 | None:intergenic |
| AAGAGGCAACTAGAAAGCCT+AGG | 0.579601 | 2_4:+6302725 | Msa0311420:CDS |
| CAATGTTCCTATAATTAGCA+TGG | 0.588161 | 2_4:-6302564 | None:intergenic |
| AGGAGAAGCCTATGAAGATG+TGG | 0.600242 | 2_4:+6301908 | Msa0311420:intron |
| CATAGGTTTCTATTCATAGG+TGG | 0.600579 | 2_4:+6302629 | Msa0311420:CDS |
| AGCAGAGACAGCTCAAAACA+AGG | 0.628235 | 2_4:+6301678 | Msa0311420:CDS |
| TCAAGATCAAGAAAATCATG+TGG | 0.628272 | 2_4:+6302593 | Msa0311420:CDS |
| CAAGATCAAGAAAATCATGT+GGG | 0.641973 | 2_4:+6302594 | Msa0311420:CDS |
| TGTAATTTACAGGCTCGTGA+TGG | 0.661735 | 2_4:+6302529 | Msa0311420:intron |
| AGCCAATAGACAATTATCTG+TGG | 0.670969 | 2_4:+6302074 | Msa0311420:CDS |
| TATTACTAAAGGAATCGCCA+TGG | 0.681550 | 2_4:+6301582 | Msa0311420:exon |
| TAATTAAGTTCGTCTTACGG+CGG | 0.686990 | 2_4:-6302750 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGATATTTATGTAAAATTC+TGG | - | chr2_4:6302233-6302252 | None:intergenic | 15.0% |
| !! | AAGATATTTATGTAAAATTC+TGG | - | chr2_4:6302233-6302252 | None:intergenic | 15.0% |
| !! | AAAAATAAAGCTGATTGAAA+AGG | - | chr2_4:6301865-6301884 | None:intergenic | 20.0% |
| !! | AATTAAAACACAAATCATGA+TGG | + | chr2_4:6302380-6302399 | Msa0311420:intron | 20.0% |
| !! | TGCAAAAAATTAAGAATAAG+AGG | - | chr2_4:6302406-6302425 | None:intergenic | 20.0% |
| !!! | CTTATTCTTAATTTTTTGCA+TGG | + | chr2_4:6302406-6302425 | Msa0311420:intron | 20.0% |
| !! | TATGAATAACGTTTAAGAAT+AGG | - | chr2_4:6302453-6302472 | None:intergenic | 20.0% |
| !! | AATTAATTAAGTTCGTCTTA+CGG | - | chr2_4:6302756-6302775 | None:intergenic | 20.0% |
| !! | AAAAATAAAGCTGATTGAAA+AGG | - | chr2_4:6301865-6301884 | None:intergenic | 20.0% |
| !! | AATTAAAACACAAATCATGA+TGG | + | chr2_4:6302380-6302399 | Msa0311420:intron | 20.0% |
| !! | TGCAAAAAATTAAGAATAAG+AGG | - | chr2_4:6302406-6302425 | None:intergenic | 20.0% |
| !!! | CTTATTCTTAATTTTTTGCA+TGG | + | chr2_4:6302406-6302425 | Msa0311420:intron | 20.0% |
| !! | TATGAATAACGTTTAAGAAT+AGG | - | chr2_4:6302453-6302472 | None:intergenic | 20.0% |
| !! | AATTAATTAAGTTCGTCTTA+CGG | - | chr2_4:6302756-6302775 | None:intergenic | 20.0% |
| !! | AAAGAGGTATATCATGTTAA+TGG | - | chr2_4:6301550-6301569 | None:intergenic | 25.0% |
| !!! | TTTTTTATTTGCCTAGCTAT+TGG | + | chr2_4:6302139-6302158 | Msa0311420:intron | 25.0% |
| !!! | TTAATTTTTTGCATGGAAGT+TGG | + | chr2_4:6302413-6302432 | Msa0311420:intron | 25.0% |
| ! | TATCTATGTGTGTAATTTAC+AGG | + | chr2_4:6302519-6302538 | Msa0311420:intron | 25.0% |
| !! | AAAGAGGTATATCATGTTAA+TGG | - | chr2_4:6301550-6301569 | None:intergenic | 25.0% |
| !!! | TTTTTTATTTGCCTAGCTAT+TGG | + | chr2_4:6302139-6302158 | Msa0311420:intron | 25.0% |
| !!! | TTAATTTTTTGCATGGAAGT+TGG | + | chr2_4:6302413-6302432 | Msa0311420:intron | 25.0% |
| ! | TATCTATGTGTGTAATTTAC+AGG | + | chr2_4:6302519-6302538 | Msa0311420:intron | 25.0% |
| AATAGGTTTGTGACATAAAG+AGG | - | chr2_4:6301566-6301585 | None:intergenic | 30.0% | |
| TGTCACAAACCTATTACTAA+AGG | + | chr2_4:6301571-6301590 | Msa0311420:five_prime_UTR | 30.0% | |
| ! | AATAAGGAAGCCATAGTTTT+TGG | - | chr2_4:6301608-6301627 | None:intergenic | 30.0% |
| CTATTTAGACTTAGACACTT+TGG | + | chr2_4:6301711-6301730 | Msa0311420:intron | 30.0% | |
| ! | ACGTAACTTTTGCAAAATCA+TGG | - | chr2_4:6301790-6301809 | None:intergenic | 30.0% |
| ! | CTCTTTTGCAATATGAAAAC+AGG | + | chr2_4:6301888-6301907 | Msa0311420:intron | 30.0% |
| TCAAATATCCACATCTTCAT+AGG | - | chr2_4:6301919-6301938 | None:intergenic | 30.0% | |
| AGATGTGGATATTTGATTGT+AGG | + | chr2_4:6301923-6301942 | Msa0311420:CDS | 30.0% | |
| !! | CATATAATTGCTAACTTGCT+TGG | + | chr2_4:6302006-6302025 | Msa0311420:CDS | 30.0% |
| TGAAATAAATGCACACATCA+TGG | + | chr2_4:6302180-6302199 | Msa0311420:intron | 30.0% | |
| !! | ATTCAAGTTGAGAAGCAATT+TGG | - | chr2_4:6302363-6302382 | None:intergenic | 30.0% |
| CAATGTTCCTATAATTAGCA+TGG | - | chr2_4:6302567-6302586 | None:intergenic | 30.0% | |
| CATGCTAATTATAGGAACAT+TGG | + | chr2_4:6302565-6302584 | Msa0311420:CDS | 30.0% | |
| TCAAGATCAAGAAAATCATG+TGG | + | chr2_4:6302593-6302612 | Msa0311420:CDS | 30.0% | |
| CAAGATCAAGAAAATCATGT+GGG | + | chr2_4:6302594-6302613 | Msa0311420:CDS | 30.0% | |
| GTGGGATATTATTTAACCAT+AGG | + | chr2_4:6302612-6302631 | Msa0311420:CDS | 30.0% | |
| AACCATAGGTTTCTATTCAT+AGG | + | chr2_4:6302626-6302645 | Msa0311420:CDS | 30.0% | |
| AATAGGTTTGTGACATAAAG+AGG | - | chr2_4:6301566-6301585 | None:intergenic | 30.0% | |
| TGTCACAAACCTATTACTAA+AGG | + | chr2_4:6301571-6301590 | Msa0311420:five_prime_UTR | 30.0% | |
| ! | AATAAGGAAGCCATAGTTTT+TGG | - | chr2_4:6301608-6301627 | None:intergenic | 30.0% |
| CTATTTAGACTTAGACACTT+TGG | + | chr2_4:6301711-6301730 | Msa0311420:intron | 30.0% | |
| ! | ACGTAACTTTTGCAAAATCA+TGG | - | chr2_4:6301790-6301809 | None:intergenic | 30.0% |
| ! | CTCTTTTGCAATATGAAAAC+AGG | + | chr2_4:6301888-6301907 | Msa0311420:intron | 30.0% |
| TCAAATATCCACATCTTCAT+AGG | - | chr2_4:6301919-6301938 | None:intergenic | 30.0% | |
| AGATGTGGATATTTGATTGT+AGG | + | chr2_4:6301923-6301942 | Msa0311420:CDS | 30.0% | |
| !! | CATATAATTGCTAACTTGCT+TGG | + | chr2_4:6302006-6302025 | Msa0311420:CDS | 30.0% |
| TGAAATAAATGCACACATCA+TGG | + | chr2_4:6302180-6302199 | Msa0311420:intron | 30.0% | |
| !! | ATTCAAGTTGAGAAGCAATT+TGG | - | chr2_4:6302363-6302382 | None:intergenic | 30.0% |
| CAATGTTCCTATAATTAGCA+TGG | - | chr2_4:6302567-6302586 | None:intergenic | 30.0% | |
| CATGCTAATTATAGGAACAT+TGG | + | chr2_4:6302565-6302584 | Msa0311420:CDS | 30.0% | |
| TCAAGATCAAGAAAATCATG+TGG | + | chr2_4:6302593-6302612 | Msa0311420:CDS | 30.0% | |
| CAAGATCAAGAAAATCATGT+GGG | + | chr2_4:6302594-6302613 | Msa0311420:CDS | 30.0% | |
| GTGGGATATTATTTAACCAT+AGG | + | chr2_4:6302612-6302631 | Msa0311420:CDS | 30.0% | |
| AACCATAGGTTTCTATTCAT+AGG | + | chr2_4:6302626-6302645 | Msa0311420:CDS | 30.0% | |
| ATGGCGATTCCTTTAGTAAT+AGG | - | chr2_4:6301583-6301602 | None:intergenic | 35.0% | |
| TATTACTAAAGGAATCGCCA+TGG | + | chr2_4:6301582-6301601 | Msa0311420:exon | 35.0% | |
| CCATGACAAGTATGCAAATA+AGG | - | chr2_4:6301624-6301643 | None:intergenic | 35.0% | |
| ! | CCTTATTTGCATACTTGTCA+TGG | + | chr2_4:6301621-6301640 | Msa0311420:CDS | 35.0% |
| CAAGTGCATGTTTGATGTTA+CGG | - | chr2_4:6301829-6301848 | None:intergenic | 35.0% | |
| !! | ATAATTGCTAACTTGCTTGG+AGG | + | chr2_4:6302009-6302028 | Msa0311420:CDS | 35.0% |
| AGCCAATAGACAATTATCTG+TGG | + | chr2_4:6302074-6302093 | Msa0311420:CDS | 35.0% | |
| AGCCACAGATAATTGTCTAT+TGG | - | chr2_4:6302079-6302098 | None:intergenic | 35.0% | |
| ! | TGGCTTTTCTCATTTTCTCT+TGG | + | chr2_4:6302094-6302113 | Msa0311420:CDS | 35.0% |
| GCATTCTCCATGCTAATTAT+AGG | + | chr2_4:6302557-6302576 | Msa0311420:CDS | 35.0% | |
| CACCTATGAATAGAAACCTA+TGG | - | chr2_4:6302631-6302650 | None:intergenic | 35.0% | |
| CATAGGTTTCTATTCATAGG+TGG | + | chr2_4:6302629-6302648 | Msa0311420:CDS | 35.0% | |
| TAATTAAGTTCGTCTTACGG+CGG | - | chr2_4:6302753-6302772 | None:intergenic | 35.0% | |
| !! | TTCAGAAGCACTTGTAATGA+AGG | - | chr2_4:6301504-6301523 | None:intergenic | 35.0% |
| ATGGCGATTCCTTTAGTAAT+AGG | - | chr2_4:6301583-6301602 | None:intergenic | 35.0% | |
| TATTACTAAAGGAATCGCCA+TGG | + | chr2_4:6301582-6301601 | Msa0311420:exon | 35.0% | |
| CCATGACAAGTATGCAAATA+AGG | - | chr2_4:6301624-6301643 | None:intergenic | 35.0% | |
| ! | CCTTATTTGCATACTTGTCA+TGG | + | chr2_4:6301621-6301640 | Msa0311420:CDS | 35.0% |
| CAAGTGCATGTTTGATGTTA+CGG | - | chr2_4:6301829-6301848 | None:intergenic | 35.0% | |
| !! | ATAATTGCTAACTTGCTTGG+AGG | + | chr2_4:6302009-6302028 | Msa0311420:CDS | 35.0% |
| AGCCAATAGACAATTATCTG+TGG | + | chr2_4:6302074-6302093 | Msa0311420:CDS | 35.0% | |
| AGCCACAGATAATTGTCTAT+TGG | - | chr2_4:6302079-6302098 | None:intergenic | 35.0% | |
| ! | TGGCTTTTCTCATTTTCTCT+TGG | + | chr2_4:6302094-6302113 | Msa0311420:CDS | 35.0% |
| GCATTCTCCATGCTAATTAT+AGG | + | chr2_4:6302557-6302576 | Msa0311420:CDS | 35.0% | |
| CACCTATGAATAGAAACCTA+TGG | - | chr2_4:6302631-6302650 | None:intergenic | 35.0% | |
| CATAGGTTTCTATTCATAGG+TGG | + | chr2_4:6302629-6302648 | Msa0311420:CDS | 35.0% | |
| TAATTAAGTTCGTCTTACGG+CGG | - | chr2_4:6302753-6302772 | None:intergenic | 35.0% | |
| TTGCATACTTGTCATGGTGA+TGG | + | chr2_4:6301627-6301646 | Msa0311420:CDS | 40.0% | |
| !! | ATGGTGATGGATATTGTTGC+AGG | + | chr2_4:6301640-6301659 | Msa0311420:CDS | 40.0% |
| GATATTGTTGCAGGCATACT+TGG | + | chr2_4:6301649-6301668 | Msa0311420:CDS | 40.0% | |
| ! | AATTGGAAAGCTTGATGGCT+AGG | - | chr2_4:6301952-6301971 | None:intergenic | 40.0% |
| AGCCATCAAGCTTTCCAATT+AGG | + | chr2_4:6301952-6301971 | Msa0311420:CDS | 40.0% | |
| GTCCTAATTGGAAAGCTTGA+TGG | - | chr2_4:6301957-6301976 | None:intergenic | 40.0% | |
| TAAGAGCTGCAAGTCCTAAT+TGG | - | chr2_4:6301969-6301988 | None:intergenic | 40.0% | |
| TGGCTGTAGCTGATCTATAT+TGG | - | chr2_4:6302059-6302078 | None:intergenic | 40.0% | |
| TTTCAAGATGTGTGACCACT+AGG | - | chr2_4:6302165-6302184 | None:intergenic | 40.0% | |
| ACCACTAGATTGTAACAACG+AGG | + | chr2_4:6302262-6302281 | Msa0311420:intron | 40.0% | |
| TCCTCGTTGTTACAATCTAG+TGG | - | chr2_4:6302266-6302285 | None:intergenic | 40.0% | |
| GTGCATTAGACAAACGTGTT+TGG | - | chr2_4:6302325-6302344 | None:intergenic | 40.0% | |
| TGTAATTTACAGGCTCGTGA+TGG | + | chr2_4:6302529-6302548 | Msa0311420:intron | 40.0% | |
| ! | GGCATTTTGTGTTTCATCCA+TGG | + | chr2_4:6302650-6302669 | Msa0311420:CDS | 40.0% |
| AAGGAACAGTGAACAATCCA+TGG | - | chr2_4:6302670-6302689 | None:intergenic | 40.0% | |
| GCTGTGGCAGAAACATAATA+AGG | - | chr2_4:6302689-6302708 | None:intergenic | 40.0% | |
| ! | TTGCCTCTTTTCTTCTCTTC+TGG | - | chr2_4:6302714-6302733 | None:intergenic | 40.0% |
| AATTAAGTTCGTCTTACGGC+GGG | - | chr2_4:6302752-6302771 | None:intergenic | 40.0% | |
| ! | GCAAGCAATTAGCAACGTTT+TGG | - | chr2_4:6302788-6302807 | None:intergenic | 40.0% |
| TTGCATACTTGTCATGGTGA+TGG | + | chr2_4:6301627-6301646 | Msa0311420:CDS | 40.0% | |
| !! | ATGGTGATGGATATTGTTGC+AGG | + | chr2_4:6301640-6301659 | Msa0311420:CDS | 40.0% |
| GATATTGTTGCAGGCATACT+TGG | + | chr2_4:6301649-6301668 | Msa0311420:CDS | 40.0% | |
| ! | AATTGGAAAGCTTGATGGCT+AGG | - | chr2_4:6301952-6301971 | None:intergenic | 40.0% |
| AGCCATCAAGCTTTCCAATT+AGG | + | chr2_4:6301952-6301971 | Msa0311420:CDS | 40.0% | |
| GTCCTAATTGGAAAGCTTGA+TGG | - | chr2_4:6301957-6301976 | None:intergenic | 40.0% | |
| TAAGAGCTGCAAGTCCTAAT+TGG | - | chr2_4:6301969-6301988 | None:intergenic | 40.0% | |
| TGGCTGTAGCTGATCTATAT+TGG | - | chr2_4:6302059-6302078 | None:intergenic | 40.0% | |
| TTTCAAGATGTGTGACCACT+AGG | - | chr2_4:6302165-6302184 | None:intergenic | 40.0% | |
| ACCACTAGATTGTAACAACG+AGG | + | chr2_4:6302262-6302281 | Msa0311420:intron | 40.0% | |
| TCCTCGTTGTTACAATCTAG+TGG | - | chr2_4:6302266-6302285 | None:intergenic | 40.0% | |
| GTGCATTAGACAAACGTGTT+TGG | - | chr2_4:6302325-6302344 | None:intergenic | 40.0% | |
| TGTAATTTACAGGCTCGTGA+TGG | + | chr2_4:6302529-6302548 | Msa0311420:intron | 40.0% | |
| ! | GGCATTTTGTGTTTCATCCA+TGG | + | chr2_4:6302650-6302669 | Msa0311420:CDS | 40.0% |
| AAGGAACAGTGAACAATCCA+TGG | - | chr2_4:6302670-6302689 | None:intergenic | 40.0% | |
| GCTGTGGCAGAAACATAATA+AGG | - | chr2_4:6302689-6302708 | None:intergenic | 40.0% | |
| ! | TTGCCTCTTTTCTTCTCTTC+TGG | - | chr2_4:6302714-6302733 | None:intergenic | 40.0% |
| AATTAAGTTCGTCTTACGGC+GGG | - | chr2_4:6302752-6302771 | None:intergenic | 40.0% | |
| ! | GCAAGCAATTAGCAACGTTT+TGG | - | chr2_4:6302788-6302807 | None:intergenic | 40.0% |
| ATCGCCATGGCCAAAAACTA+TGG | + | chr2_4:6301595-6301614 | Msa0311420:exon | 45.0% | |
| !!! | GAAGCCATAGTTTTTGGCCA+TGG | - | chr2_4:6301602-6301621 | None:intergenic | 45.0% |
| AGCAGAGACAGCTCAAAACA+AGG | + | chr2_4:6301678-6301697 | Msa0311420:CDS | 45.0% | |
| AGGAGAAGCCTATGAAGATG+TGG | + | chr2_4:6301908-6301927 | Msa0311420:intron | 45.0% | |
| GCACACATCATGGACAAATG+TGG | + | chr2_4:6302190-6302209 | Msa0311420:intron | 45.0% | |
| ! | CCTCTTTTCTTCTCTTCTGG+TGG | - | chr2_4:6302711-6302730 | None:intergenic | 45.0% |
| CCACCAGAAGAGAAGAAAAG+AGG | + | chr2_4:6302708-6302727 | Msa0311420:CDS | 45.0% | |
| AAGAGGCAACTAGAAAGCCT+AGG | + | chr2_4:6302725-6302744 | Msa0311420:CDS | 45.0% | |
| ATCGCCATGGCCAAAAACTA+TGG | + | chr2_4:6301595-6301614 | Msa0311420:exon | 45.0% | |
| !!! | GAAGCCATAGTTTTTGGCCA+TGG | - | chr2_4:6301602-6301621 | None:intergenic | 45.0% |
| AGCAGAGACAGCTCAAAACA+AGG | + | chr2_4:6301678-6301697 | Msa0311420:CDS | 45.0% | |
| AGGAGAAGCCTATGAAGATG+TGG | + | chr2_4:6301908-6301927 | Msa0311420:intron | 45.0% | |
| GCACACATCATGGACAAATG+TGG | + | chr2_4:6302190-6302209 | Msa0311420:intron | 45.0% | |
| ! | CCTCTTTTCTTCTCTTCTGG+TGG | - | chr2_4:6302711-6302730 | None:intergenic | 45.0% |
| CCACCAGAAGAGAAGAAAAG+AGG | + | chr2_4:6302708-6302727 | Msa0311420:CDS | 45.0% | |
| AAGAGGCAACTAGAAAGCCT+AGG | + | chr2_4:6302725-6302744 | Msa0311420:CDS | 45.0% | |
| !!! | AAATAAAAAAATAAATGTTT+TGG | - | chr2_4:6302129-6302148 | None:intergenic | 5.0% |
| !!! | AAATAAAAAAATAAATGTTT+TGG | - | chr2_4:6302129-6302148 | None:intergenic | 5.0% |
| ! | TTGCCTAGCTATTGGCCTAG+TGG | + | chr2_4:6302147-6302166 | Msa0311420:intron | 50.0% |
| TGACCACTAGGCCAATAGCT+AGG | - | chr2_4:6302153-6302172 | None:intergenic | 50.0% | |
| TTCTTCTCTTCTGGTGGCTG+TGG | - | chr2_4:6302705-6302724 | None:intergenic | 50.0% | |
| ! | TTGCCTAGCTATTGGCCTAG+TGG | + | chr2_4:6302147-6302166 | Msa0311420:intron | 50.0% |
| TGACCACTAGGCCAATAGCT+AGG | - | chr2_4:6302153-6302172 | None:intergenic | 50.0% | |
| TTCTTCTCTTCTGGTGGCTG+TGG | - | chr2_4:6302705-6302724 | None:intergenic | 50.0% | |
| TTCGTCTTACGGCGGGACCT+AGG | - | chr2_4:6302745-6302764 | None:intergenic | 60.0% | |
| TTCGTCTTACGGCGGGACCT+AGG | - | chr2_4:6302745-6302764 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 6301502 | 6302879 | 6301502 | ID=Msa0311420;Name=Msa0311420 |
| chr2_4 | mRNA | 6301502 | 6302879 | 6301502 | ID=Msa0311420-mRNA-1;Parent=Msa0311420;Name=Msa0311420-mRNA-1;_AED=0.06;_eAED=0.06;_QI=99|1|1|1|1|1|3|110|177 |
| chr2_4 | exon | 6301502 | 6301699 | 6301502 | ID=Msa0311420-mRNA-1:exon:2400;Parent=Msa0311420-mRNA-1 |
| chr2_4 | exon | 6301910 | 6302115 | 6301910 | ID=Msa0311420-mRNA-1:exon:2401;Parent=Msa0311420-mRNA-1 |
| chr2_4 | exon | 6302541 | 6302879 | 6302541 | ID=Msa0311420-mRNA-1:exon:2402;Parent=Msa0311420-mRNA-1 |
| chr2_4 | five_prime_UTR | 6301502 | 6301600 | 6301502 | ID=Msa0311420-mRNA-1:five_prime_utr;Parent=Msa0311420-mRNA-1 |
| chr2_4 | CDS | 6301601 | 6301699 | 6301601 | ID=Msa0311420-mRNA-1:cds;Parent=Msa0311420-mRNA-1 |
| chr2_4 | CDS | 6301910 | 6302115 | 6301910 | ID=Msa0311420-mRNA-1:cds;Parent=Msa0311420-mRNA-1 |
| chr2_4 | CDS | 6302541 | 6302769 | 6302541 | ID=Msa0311420-mRNA-1:cds;Parent=Msa0311420-mRNA-1 |
| chr2_4 | three_prime_UTR | 6302770 | 6302879 | 6302770 | ID=Msa0311420-mRNA-1:three_prime_utr;Parent=Msa0311420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
