Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0190690 | XP_003593382.3 | 95.480 | 177 | 7 | 1 | 1 | 177 | 18 | 193 | 3.08e-119 | 345 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0190690 | sp|O81898|DEAL2_ARATH | 65.031 | 163 | 56 | 1 | 1 | 163 | 1 | 162 | 1.62e-77 | 231 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0190690 | G7IK23 | 95.480 | 177 | 7 | 1 | 1 | 177 | 1 | 176 | 1.95e-119 | 344 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004640 | Msa0190690 | 0.805479 | 1.308898e-49 | -8.615850e-47 |
| Msa0034270 | Msa0190690 | 0.816929 | 4.292792e-52 | -8.615850e-47 |
| Msa0094850 | Msa0190690 | 0.816154 | 6.400634e-52 | -8.615850e-47 |
| Msa0142200 | Msa0190690 | 0.814843 | 1.253006e-51 | -8.615850e-47 |
| Msa0173660 | Msa0190690 | 0.816527 | 5.281577e-52 | -8.615850e-47 |
| Msa0190690 | Msa0190770 | 0.808279 | 3.349215e-50 | -8.615850e-47 |
| Msa0190690 | Msa0205850 | 0.803278 | 3.762951e-49 | -8.615850e-47 |
| Msa0190690 | Msa0227470 | 0.810700 | 1.012022e-50 | -8.615850e-47 |
| Msa0190690 | Msa0262510 | 0.800600 | 1.335826e-48 | -8.615850e-47 |
| Msa0190690 | Msa0306300 | 0.827041 | 1.946884e-54 | -8.615850e-47 |
| Msa0190690 | Msa0311420 | 0.982009 | 5.308826e-154 | -8.615850e-47 |
| Msa0190690 | Msa0341910 | 0.809087 | 2.250647e-50 | -8.615850e-47 |
| Msa0190690 | Msa0363350 | 0.805594 | 1.237840e-49 | -8.615850e-47 |
| Msa0190690 | Msa0410650 | 0.803735 | 3.025157e-49 | -8.615850e-47 |
| Msa0190690 | Msa0417880 | 0.809308 | 2.017488e-50 | -8.615850e-47 |
| Msa0190690 | Msa0452920 | 0.816140 | 6.447775e-52 | -8.615850e-47 |
| Msa0190690 | Msa0452960 | 0.801833 | 7.471505e-49 | -8.615850e-47 |
| Msa0190690 | Msa0484780 | 0.825678 | 4.112547e-54 | -8.615850e-47 |
| Msa0190690 | Msa0507680 | 0.803849 | 2.864705e-49 | -8.615850e-47 |
| Msa0190690 | Msa0682550 | 0.805910 | 1.062546e-49 | -8.615850e-47 |
| Msa0190690 | Msa0693380 | 0.803993 | 2.673493e-49 | -8.615850e-47 |
| Msa0190690 | Msa0796160 | 0.809521 | 1.816261e-50 | -8.615850e-47 |
| Msa0190690 | Msa0824660 | 0.818105 | 2.331794e-52 | -8.615850e-47 |
| Msa0190690 | Msa0833760 | 0.811292 | 7.530975e-51 | -8.615850e-47 |
| Msa0190690 | Msa0844240 | 0.800116 | 1.675784e-48 | -8.615850e-47 |
| Msa0190690 | Msa1007270 | 0.806924 | 6.495721e-50 | -8.615850e-47 |
| Msa0190690 | Msa1031930 | 0.816422 | 5.575518e-52 | -8.615850e-47 |
| Msa0190690 | Msa1082500 | 0.817760 | 2.789651e-52 | -8.615850e-47 |
| Msa0190690 | Msa1108160 | 0.811182 | 7.954699e-51 | -8.615850e-47 |
| Msa0190690 | Msa1132700 | 0.805404 | 1.356971e-49 | -8.615850e-47 |
| Msa0190690 | Msa1152510 | 0.805101 | 1.570326e-49 | -8.615850e-47 |
| Msa0190690 | Msa1355800 | 0.806403 | 8.366311e-50 | -8.615850e-47 |
| Msa0190690 | Msa1442820 | 0.800478 | 1.414403e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0190690 | MtrunA17_Chr2g0280491 | 95.480 | 177 | 7 | 1 | 1 | 177 | 1 | 176 | 3.75e-123 | 344 |
| Msa0190690 | MtrunA17_Chr4g0049001 | 73.333 | 165 | 43 | 1 | 1 | 165 | 1 | 164 | 9.41e-90 | 259 |
| Msa0190690 | MtrunA17_Chr2g0323081 | 60.377 | 159 | 62 | 1 | 1 | 159 | 1 | 158 | 5.27e-69 | 206 |
| Msa0190690 | MtrunA17_Chr4g0023621 | 57.233 | 159 | 67 | 1 | 1 | 159 | 1 | 158 | 5.10e-67 | 201 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0190690 | AT4G21310.1 | 65.031 | 163 | 56 | 1 | 1 | 163 | 1 | 162 | 1.64e-78 | 231 |
| Msa0190690 | AT2G32280.1 | 52.439 | 164 | 77 | 1 | 1 | 164 | 1 | 163 | 4.16e-65 | 197 |
| Msa0190690 | AT2G32280.2 | 52.439 | 164 | 77 | 1 | 1 | 164 | 1 | 163 | 4.16e-65 | 197 |
| Msa0190690 | AT4G21310.2 | 64.800 | 125 | 43 | 1 | 39 | 163 | 1 | 124 | 5.91e-58 | 178 |
| Msa0190690 | AT1G11500.1 | 43.243 | 185 | 93 | 4 | 1 | 175 | 1 | 183 | 5.37e-45 | 147 |
| Msa0190690 | AT1G11500.3 | 43.243 | 185 | 93 | 4 | 1 | 175 | 6 | 188 | 5.96e-45 | 147 |
| Msa0190690 | AT1G11500.2 | 48.507 | 134 | 64 | 3 | 45 | 175 | 24 | 155 | 3.46e-37 | 126 |
| Msa0190690 | AT1G05291.1 | 35.065 | 154 | 88 | 5 | 12 | 160 | 23 | 169 | 3.18e-17 | 75.9 |
Find 44 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATTCTCCATGCTAATTAT+AGG | 0.246080 | 2_1:+6226996 | Msa0190690:CDS |
| CCATGACAAGTATGCAAATA+AGG | 0.285775 | 2_1:-6226060 | None:intergenic |
| TAAGAGCTGCAAGTCCTAAT+TGG | 0.301626 | 2_1:-6226405 | None:intergenic |
| ATGGCGATTCCTTTAGTAAT+AGG | 0.303595 | 2_1:-6226019 | None:intergenic |
| AGCCATCAAGCTTTCCAATT+AGG | 0.307387 | 2_1:+6226391 | Msa0190690:CDS |
| AAAGAGGTATATCATGTTAA+TGG | 0.317330 | 2_1:-6225986 | None:intergenic |
| GCAAGCAATTAGCAACGTTT+TGG | 0.364038 | 2_1:-6227224 | None:intergenic |
| TCAAATATCCACATCTTCAT+AGG | 0.374996 | 2_1:-6226355 | None:intergenic |
| GATATTGTTGCAGGCATACT+TGG | 0.378516 | 2_1:+6226088 | Msa0190690:CDS |
| CATATAATTGCTAACTTGCT+TGG | 0.379275 | 2_1:+6226445 | Msa0190690:CDS |
| AACCATAGGTTTCTATTCAT+AGG | 0.398851 | 2_1:+6227065 | Msa0190690:CDS |
| TTCTTCTCTTCTGGTGGCTG+TGG | 0.416591 | 2_1:-6227141 | None:intergenic |
| GTCCTAATTGGAAAGCTTGA+TGG | 0.422083 | 2_1:-6226393 | None:intergenic |
| AGCCACAGATAATTGTCTAT+TGG | 0.431607 | 2_1:-6226515 | None:intergenic |
| CCTTATTTGCATACTTGTCA+TGG | 0.434363 | 2_1:+6226060 | Msa0190690:CDS |
| TTCAGAAGCACTTGTAATGA+AGG | 0.456251 | 2_1:-6225940 | None:intergenic |
| TGGCTGTAGCTGATCTATAT+TGG | 0.456295 | 2_1:-6226495 | None:intergenic |
| TGTCACAAACCTATTACTAA+AGG | 0.464068 | 2_1:+6226010 | Msa0190690:five_prime_UTR |
| GTGGGATATTATTTAACCAT+AGG | 0.468696 | 2_1:+6227051 | Msa0190690:CDS |
| AATTAATTAAGTTCGTCTTA+CGG | 0.469054 | 2_1:-6227192 | None:intergenic |
| AGATGTGGATATTTGATTGT+AGG | 0.471306 | 2_1:+6226362 | Msa0190690:CDS |
| TTCGTCTTACGGCGGGACCT+AGG | 0.477372 | 2_1:-6227181 | None:intergenic |
| AATTGGAAAGCTTGATGGCT+AGG | 0.481649 | 2_1:-6226388 | None:intergenic |
| ATGGTGATGGATATTGTTGC+AGG | 0.483198 | 2_1:+6226079 | Msa0190690:CDS |
| AATAGGTTTGTGACATAAAG+AGG | 0.493536 | 2_1:-6226002 | None:intergenic |
| CCACCAGAAGAGAAGAAAAG+AGG | 0.504369 | 2_1:+6227147 | Msa0190690:CDS |
| GCTGTGGCAGAAACATAATA+AGG | 0.508299 | 2_1:-6227125 | None:intergenic |
| TTGCATACTTGTCATGGTGA+TGG | 0.517259 | 2_1:+6226066 | Msa0190690:CDS |
| CATGCTAATTATAGGAACAT+TGG | 0.523902 | 2_1:+6227004 | Msa0190690:CDS |
| AAGGAACAGTGAACAATCCA+TGG | 0.529237 | 2_1:-6227106 | None:intergenic |
| ATAATTGCTAACTTGCTTGG+AGG | 0.540663 | 2_1:+6226448 | Msa0190690:CDS |
| CACCTATGAATAGAAACCTA+TGG | 0.554888 | 2_1:-6227067 | None:intergenic |
| AATTAAGTTCGTCTTACGGC+GGG | 0.559164 | 2_1:-6227188 | None:intergenic |
| AAGAGGCAACTAGAAAGCCT+AGG | 0.579601 | 2_1:+6227164 | Msa0190690:CDS |
| CAATGTTCCTATAATTAGCA+TGG | 0.588161 | 2_1:-6227003 | None:intergenic |
| AGGAGAAGCCTATGAAGATG+TGG | 0.600242 | 2_1:+6226347 | Msa0190690:intron |
| CATAGGTTTCTATTCATAGG+TGG | 0.600579 | 2_1:+6227068 | Msa0190690:CDS |
| AGCAGAGACAGCTCAAAACA+AGG | 0.628235 | 2_1:+6226117 | Msa0190690:CDS |
| TCAAGATCAAGAAAATCATG+TGG | 0.628272 | 2_1:+6227032 | Msa0190690:CDS |
| CAAGATCAAGAAAATCATGT+GGG | 0.641973 | 2_1:+6227033 | Msa0190690:CDS |
| TGTAATTTACAGGCTCGTGA+TGG | 0.661735 | 2_1:+6226968 | Msa0190690:intron |
| AGCCAATAGACAATTATCTG+TGG | 0.670969 | 2_1:+6226513 | Msa0190690:CDS |
| TATTACTAAAGGAATCGCCA+TGG | 0.681550 | 2_1:+6226021 | Msa0190690:exon |
| TAATTAAGTTCGTCTTACGG+CGG | 0.686990 | 2_1:-6227189 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGATATTTATGTAAAATTC+TGG | - | chr2_1:6226672-6226691 | None:intergenic | 15.0% |
| !! | AAGATATTTATGTAAAATTC+TGG | - | chr2_1:6226672-6226691 | None:intergenic | 15.0% |
| !! | AAAAATAAAGCTGATTGAAA+AGG | - | chr2_1:6226304-6226323 | None:intergenic | 20.0% |
| !! | AATTAAAACACAAATCATGA+TGG | + | chr2_1:6226819-6226838 | Msa0190690:intron | 20.0% |
| !! | TGCAAAAAATTAAGAATAAG+AGG | - | chr2_1:6226845-6226864 | None:intergenic | 20.0% |
| !!! | CTTATTCTTAATTTTTTGCA+TGG | + | chr2_1:6226845-6226864 | Msa0190690:intron | 20.0% |
| !! | TATGAATAACGTTTAAGAAT+AGG | - | chr2_1:6226892-6226911 | None:intergenic | 20.0% |
| !! | AATTAATTAAGTTCGTCTTA+CGG | - | chr2_1:6227195-6227214 | None:intergenic | 20.0% |
| !! | AAAAATAAAGCTGATTGAAA+AGG | - | chr2_1:6226304-6226323 | None:intergenic | 20.0% |
| !! | AATTAAAACACAAATCATGA+TGG | + | chr2_1:6226819-6226838 | Msa0190690:intron | 20.0% |
| !! | TGCAAAAAATTAAGAATAAG+AGG | - | chr2_1:6226845-6226864 | None:intergenic | 20.0% |
| !!! | CTTATTCTTAATTTTTTGCA+TGG | + | chr2_1:6226845-6226864 | Msa0190690:intron | 20.0% |
| !! | TATGAATAACGTTTAAGAAT+AGG | - | chr2_1:6226892-6226911 | None:intergenic | 20.0% |
| !! | AATTAATTAAGTTCGTCTTA+CGG | - | chr2_1:6227195-6227214 | None:intergenic | 20.0% |
| !! | AAAGAGGTATATCATGTTAA+TGG | - | chr2_1:6225989-6226008 | None:intergenic | 25.0% |
| !!! | TTTTTTATTTGCCTAGCTAT+TGG | + | chr2_1:6226578-6226597 | Msa0190690:intron | 25.0% |
| !!! | TTAATTTTTTGCATGGAAGT+TGG | + | chr2_1:6226852-6226871 | Msa0190690:intron | 25.0% |
| ! | TATCTATGTGTGTAATTTAC+AGG | + | chr2_1:6226958-6226977 | Msa0190690:intron | 25.0% |
| !! | AAAGAGGTATATCATGTTAA+TGG | - | chr2_1:6225989-6226008 | None:intergenic | 25.0% |
| !!! | TTTTTTATTTGCCTAGCTAT+TGG | + | chr2_1:6226578-6226597 | Msa0190690:intron | 25.0% |
| !!! | TTAATTTTTTGCATGGAAGT+TGG | + | chr2_1:6226852-6226871 | Msa0190690:intron | 25.0% |
| ! | TATCTATGTGTGTAATTTAC+AGG | + | chr2_1:6226958-6226977 | Msa0190690:intron | 25.0% |
| AATAGGTTTGTGACATAAAG+AGG | - | chr2_1:6226005-6226024 | None:intergenic | 30.0% | |
| TGTCACAAACCTATTACTAA+AGG | + | chr2_1:6226010-6226029 | Msa0190690:five_prime_UTR | 30.0% | |
| ! | AATAAGGAAGCCATAGTTTT+TGG | - | chr2_1:6226047-6226066 | None:intergenic | 30.0% |
| CTATTTAGACTTAGACACTT+TGG | + | chr2_1:6226150-6226169 | Msa0190690:intron | 30.0% | |
| ! | ACGTAACTTTTGCAAAATCA+TGG | - | chr2_1:6226229-6226248 | None:intergenic | 30.0% |
| ! | CTCTTTTGCAATATGAAAAC+AGG | + | chr2_1:6226327-6226346 | Msa0190690:intron | 30.0% |
| TCAAATATCCACATCTTCAT+AGG | - | chr2_1:6226358-6226377 | None:intergenic | 30.0% | |
| AGATGTGGATATTTGATTGT+AGG | + | chr2_1:6226362-6226381 | Msa0190690:CDS | 30.0% | |
| !! | CATATAATTGCTAACTTGCT+TGG | + | chr2_1:6226445-6226464 | Msa0190690:CDS | 30.0% |
| TGAAATAAATGCACACATCA+TGG | + | chr2_1:6226619-6226638 | Msa0190690:intron | 30.0% | |
| !! | ATTCAAGTTGAGAAGCAATT+TGG | - | chr2_1:6226802-6226821 | None:intergenic | 30.0% |
| CAATGTTCCTATAATTAGCA+TGG | - | chr2_1:6227006-6227025 | None:intergenic | 30.0% | |
| CATGCTAATTATAGGAACAT+TGG | + | chr2_1:6227004-6227023 | Msa0190690:CDS | 30.0% | |
| TCAAGATCAAGAAAATCATG+TGG | + | chr2_1:6227032-6227051 | Msa0190690:CDS | 30.0% | |
| CAAGATCAAGAAAATCATGT+GGG | + | chr2_1:6227033-6227052 | Msa0190690:CDS | 30.0% | |
| GTGGGATATTATTTAACCAT+AGG | + | chr2_1:6227051-6227070 | Msa0190690:CDS | 30.0% | |
| AACCATAGGTTTCTATTCAT+AGG | + | chr2_1:6227065-6227084 | Msa0190690:CDS | 30.0% | |
| AATAGGTTTGTGACATAAAG+AGG | - | chr2_1:6226005-6226024 | None:intergenic | 30.0% | |
| TGTCACAAACCTATTACTAA+AGG | + | chr2_1:6226010-6226029 | Msa0190690:five_prime_UTR | 30.0% | |
| ! | AATAAGGAAGCCATAGTTTT+TGG | - | chr2_1:6226047-6226066 | None:intergenic | 30.0% |
| CTATTTAGACTTAGACACTT+TGG | + | chr2_1:6226150-6226169 | Msa0190690:intron | 30.0% | |
| ! | ACGTAACTTTTGCAAAATCA+TGG | - | chr2_1:6226229-6226248 | None:intergenic | 30.0% |
| ! | CTCTTTTGCAATATGAAAAC+AGG | + | chr2_1:6226327-6226346 | Msa0190690:intron | 30.0% |
| TCAAATATCCACATCTTCAT+AGG | - | chr2_1:6226358-6226377 | None:intergenic | 30.0% | |
| AGATGTGGATATTTGATTGT+AGG | + | chr2_1:6226362-6226381 | Msa0190690:CDS | 30.0% | |
| !! | CATATAATTGCTAACTTGCT+TGG | + | chr2_1:6226445-6226464 | Msa0190690:CDS | 30.0% |
| TGAAATAAATGCACACATCA+TGG | + | chr2_1:6226619-6226638 | Msa0190690:intron | 30.0% | |
| !! | ATTCAAGTTGAGAAGCAATT+TGG | - | chr2_1:6226802-6226821 | None:intergenic | 30.0% |
| CAATGTTCCTATAATTAGCA+TGG | - | chr2_1:6227006-6227025 | None:intergenic | 30.0% | |
| CATGCTAATTATAGGAACAT+TGG | + | chr2_1:6227004-6227023 | Msa0190690:CDS | 30.0% | |
| TCAAGATCAAGAAAATCATG+TGG | + | chr2_1:6227032-6227051 | Msa0190690:CDS | 30.0% | |
| CAAGATCAAGAAAATCATGT+GGG | + | chr2_1:6227033-6227052 | Msa0190690:CDS | 30.0% | |
| GTGGGATATTATTTAACCAT+AGG | + | chr2_1:6227051-6227070 | Msa0190690:CDS | 30.0% | |
| AACCATAGGTTTCTATTCAT+AGG | + | chr2_1:6227065-6227084 | Msa0190690:CDS | 30.0% | |
| ATGGCGATTCCTTTAGTAAT+AGG | - | chr2_1:6226022-6226041 | None:intergenic | 35.0% | |
| TATTACTAAAGGAATCGCCA+TGG | + | chr2_1:6226021-6226040 | Msa0190690:exon | 35.0% | |
| CCATGACAAGTATGCAAATA+AGG | - | chr2_1:6226063-6226082 | None:intergenic | 35.0% | |
| ! | CCTTATTTGCATACTTGTCA+TGG | + | chr2_1:6226060-6226079 | Msa0190690:CDS | 35.0% |
| CAAGTGCATGTTTGATGTTA+CGG | - | chr2_1:6226268-6226287 | None:intergenic | 35.0% | |
| !! | ATAATTGCTAACTTGCTTGG+AGG | + | chr2_1:6226448-6226467 | Msa0190690:CDS | 35.0% |
| AGCCAATAGACAATTATCTG+TGG | + | chr2_1:6226513-6226532 | Msa0190690:CDS | 35.0% | |
| AGCCACAGATAATTGTCTAT+TGG | - | chr2_1:6226518-6226537 | None:intergenic | 35.0% | |
| ! | TGGCTTTTCTCATTTTCTCT+TGG | + | chr2_1:6226533-6226552 | Msa0190690:CDS | 35.0% |
| GCATTCTCCATGCTAATTAT+AGG | + | chr2_1:6226996-6227015 | Msa0190690:CDS | 35.0% | |
| CACCTATGAATAGAAACCTA+TGG | - | chr2_1:6227070-6227089 | None:intergenic | 35.0% | |
| CATAGGTTTCTATTCATAGG+TGG | + | chr2_1:6227068-6227087 | Msa0190690:CDS | 35.0% | |
| TAATTAAGTTCGTCTTACGG+CGG | - | chr2_1:6227192-6227211 | None:intergenic | 35.0% | |
| !! | TTCAGAAGCACTTGTAATGA+AGG | - | chr2_1:6225943-6225962 | None:intergenic | 35.0% |
| ATGGCGATTCCTTTAGTAAT+AGG | - | chr2_1:6226022-6226041 | None:intergenic | 35.0% | |
| TATTACTAAAGGAATCGCCA+TGG | + | chr2_1:6226021-6226040 | Msa0190690:exon | 35.0% | |
| CCATGACAAGTATGCAAATA+AGG | - | chr2_1:6226063-6226082 | None:intergenic | 35.0% | |
| ! | CCTTATTTGCATACTTGTCA+TGG | + | chr2_1:6226060-6226079 | Msa0190690:CDS | 35.0% |
| CAAGTGCATGTTTGATGTTA+CGG | - | chr2_1:6226268-6226287 | None:intergenic | 35.0% | |
| !! | ATAATTGCTAACTTGCTTGG+AGG | + | chr2_1:6226448-6226467 | Msa0190690:CDS | 35.0% |
| AGCCAATAGACAATTATCTG+TGG | + | chr2_1:6226513-6226532 | Msa0190690:CDS | 35.0% | |
| AGCCACAGATAATTGTCTAT+TGG | - | chr2_1:6226518-6226537 | None:intergenic | 35.0% | |
| ! | TGGCTTTTCTCATTTTCTCT+TGG | + | chr2_1:6226533-6226552 | Msa0190690:CDS | 35.0% |
| GCATTCTCCATGCTAATTAT+AGG | + | chr2_1:6226996-6227015 | Msa0190690:CDS | 35.0% | |
| CACCTATGAATAGAAACCTA+TGG | - | chr2_1:6227070-6227089 | None:intergenic | 35.0% | |
| CATAGGTTTCTATTCATAGG+TGG | + | chr2_1:6227068-6227087 | Msa0190690:CDS | 35.0% | |
| TAATTAAGTTCGTCTTACGG+CGG | - | chr2_1:6227192-6227211 | None:intergenic | 35.0% | |
| TTGCATACTTGTCATGGTGA+TGG | + | chr2_1:6226066-6226085 | Msa0190690:CDS | 40.0% | |
| !! | ATGGTGATGGATATTGTTGC+AGG | + | chr2_1:6226079-6226098 | Msa0190690:CDS | 40.0% |
| GATATTGTTGCAGGCATACT+TGG | + | chr2_1:6226088-6226107 | Msa0190690:CDS | 40.0% | |
| ! | AATTGGAAAGCTTGATGGCT+AGG | - | chr2_1:6226391-6226410 | None:intergenic | 40.0% |
| AGCCATCAAGCTTTCCAATT+AGG | + | chr2_1:6226391-6226410 | Msa0190690:CDS | 40.0% | |
| GTCCTAATTGGAAAGCTTGA+TGG | - | chr2_1:6226396-6226415 | None:intergenic | 40.0% | |
| TAAGAGCTGCAAGTCCTAAT+TGG | - | chr2_1:6226408-6226427 | None:intergenic | 40.0% | |
| TGGCTGTAGCTGATCTATAT+TGG | - | chr2_1:6226498-6226517 | None:intergenic | 40.0% | |
| TTTCAAGATGTGTGACCACT+AGG | - | chr2_1:6226604-6226623 | None:intergenic | 40.0% | |
| ACCACTAGATTGTAACAACG+AGG | + | chr2_1:6226701-6226720 | Msa0190690:intron | 40.0% | |
| TCCTCGTTGTTACAATCTAG+TGG | - | chr2_1:6226705-6226724 | None:intergenic | 40.0% | |
| GTGCATTAGACAAACGTGTT+TGG | - | chr2_1:6226764-6226783 | None:intergenic | 40.0% | |
| TGTAATTTACAGGCTCGTGA+TGG | + | chr2_1:6226968-6226987 | Msa0190690:intron | 40.0% | |
| ! | GGCATTTTGTGTTTCATCCA+TGG | + | chr2_1:6227089-6227108 | Msa0190690:CDS | 40.0% |
| AAGGAACAGTGAACAATCCA+TGG | - | chr2_1:6227109-6227128 | None:intergenic | 40.0% | |
| GCTGTGGCAGAAACATAATA+AGG | - | chr2_1:6227128-6227147 | None:intergenic | 40.0% | |
| ! | TTGCCTCTTTTCTTCTCTTC+TGG | - | chr2_1:6227153-6227172 | None:intergenic | 40.0% |
| AATTAAGTTCGTCTTACGGC+GGG | - | chr2_1:6227191-6227210 | None:intergenic | 40.0% | |
| ! | GCAAGCAATTAGCAACGTTT+TGG | - | chr2_1:6227227-6227246 | None:intergenic | 40.0% |
| TTGCATACTTGTCATGGTGA+TGG | + | chr2_1:6226066-6226085 | Msa0190690:CDS | 40.0% | |
| !! | ATGGTGATGGATATTGTTGC+AGG | + | chr2_1:6226079-6226098 | Msa0190690:CDS | 40.0% |
| GATATTGTTGCAGGCATACT+TGG | + | chr2_1:6226088-6226107 | Msa0190690:CDS | 40.0% | |
| ! | AATTGGAAAGCTTGATGGCT+AGG | - | chr2_1:6226391-6226410 | None:intergenic | 40.0% |
| AGCCATCAAGCTTTCCAATT+AGG | + | chr2_1:6226391-6226410 | Msa0190690:CDS | 40.0% | |
| GTCCTAATTGGAAAGCTTGA+TGG | - | chr2_1:6226396-6226415 | None:intergenic | 40.0% | |
| TAAGAGCTGCAAGTCCTAAT+TGG | - | chr2_1:6226408-6226427 | None:intergenic | 40.0% | |
| TGGCTGTAGCTGATCTATAT+TGG | - | chr2_1:6226498-6226517 | None:intergenic | 40.0% | |
| TTTCAAGATGTGTGACCACT+AGG | - | chr2_1:6226604-6226623 | None:intergenic | 40.0% | |
| ACCACTAGATTGTAACAACG+AGG | + | chr2_1:6226701-6226720 | Msa0190690:intron | 40.0% | |
| TCCTCGTTGTTACAATCTAG+TGG | - | chr2_1:6226705-6226724 | None:intergenic | 40.0% | |
| GTGCATTAGACAAACGTGTT+TGG | - | chr2_1:6226764-6226783 | None:intergenic | 40.0% | |
| TGTAATTTACAGGCTCGTGA+TGG | + | chr2_1:6226968-6226987 | Msa0190690:intron | 40.0% | |
| ! | GGCATTTTGTGTTTCATCCA+TGG | + | chr2_1:6227089-6227108 | Msa0190690:CDS | 40.0% |
| AAGGAACAGTGAACAATCCA+TGG | - | chr2_1:6227109-6227128 | None:intergenic | 40.0% | |
| GCTGTGGCAGAAACATAATA+AGG | - | chr2_1:6227128-6227147 | None:intergenic | 40.0% | |
| ! | TTGCCTCTTTTCTTCTCTTC+TGG | - | chr2_1:6227153-6227172 | None:intergenic | 40.0% |
| AATTAAGTTCGTCTTACGGC+GGG | - | chr2_1:6227191-6227210 | None:intergenic | 40.0% | |
| ! | GCAAGCAATTAGCAACGTTT+TGG | - | chr2_1:6227227-6227246 | None:intergenic | 40.0% |
| ATCGCCATGGCCAAAAACTA+TGG | + | chr2_1:6226034-6226053 | Msa0190690:exon | 45.0% | |
| !!! | GAAGCCATAGTTTTTGGCCA+TGG | - | chr2_1:6226041-6226060 | None:intergenic | 45.0% |
| AGCAGAGACAGCTCAAAACA+AGG | + | chr2_1:6226117-6226136 | Msa0190690:CDS | 45.0% | |
| AGGAGAAGCCTATGAAGATG+TGG | + | chr2_1:6226347-6226366 | Msa0190690:intron | 45.0% | |
| GCACACATCATGGACAAATG+TGG | + | chr2_1:6226629-6226648 | Msa0190690:intron | 45.0% | |
| ! | CCTCTTTTCTTCTCTTCTGG+TGG | - | chr2_1:6227150-6227169 | None:intergenic | 45.0% |
| CCACCAGAAGAGAAGAAAAG+AGG | + | chr2_1:6227147-6227166 | Msa0190690:CDS | 45.0% | |
| AAGAGGCAACTAGAAAGCCT+AGG | + | chr2_1:6227164-6227183 | Msa0190690:CDS | 45.0% | |
| ATCGCCATGGCCAAAAACTA+TGG | + | chr2_1:6226034-6226053 | Msa0190690:exon | 45.0% | |
| !!! | GAAGCCATAGTTTTTGGCCA+TGG | - | chr2_1:6226041-6226060 | None:intergenic | 45.0% |
| AGCAGAGACAGCTCAAAACA+AGG | + | chr2_1:6226117-6226136 | Msa0190690:CDS | 45.0% | |
| AGGAGAAGCCTATGAAGATG+TGG | + | chr2_1:6226347-6226366 | Msa0190690:intron | 45.0% | |
| GCACACATCATGGACAAATG+TGG | + | chr2_1:6226629-6226648 | Msa0190690:intron | 45.0% | |
| ! | CCTCTTTTCTTCTCTTCTGG+TGG | - | chr2_1:6227150-6227169 | None:intergenic | 45.0% |
| CCACCAGAAGAGAAGAAAAG+AGG | + | chr2_1:6227147-6227166 | Msa0190690:CDS | 45.0% | |
| AAGAGGCAACTAGAAAGCCT+AGG | + | chr2_1:6227164-6227183 | Msa0190690:CDS | 45.0% | |
| !!! | AAATAAAAAAATAAATGTTT+TGG | - | chr2_1:6226568-6226587 | None:intergenic | 5.0% |
| !!! | AAATAAAAAAATAAATGTTT+TGG | - | chr2_1:6226568-6226587 | None:intergenic | 5.0% |
| ! | TTGCCTAGCTATTGGCCTAG+TGG | + | chr2_1:6226586-6226605 | Msa0190690:intron | 50.0% |
| TGACCACTAGGCCAATAGCT+AGG | - | chr2_1:6226592-6226611 | None:intergenic | 50.0% | |
| TTCTTCTCTTCTGGTGGCTG+TGG | - | chr2_1:6227144-6227163 | None:intergenic | 50.0% | |
| ! | TTGCCTAGCTATTGGCCTAG+TGG | + | chr2_1:6226586-6226605 | Msa0190690:intron | 50.0% |
| TGACCACTAGGCCAATAGCT+AGG | - | chr2_1:6226592-6226611 | None:intergenic | 50.0% | |
| TTCTTCTCTTCTGGTGGCTG+TGG | - | chr2_1:6227144-6227163 | None:intergenic | 50.0% | |
| TTCGTCTTACGGCGGGACCT+AGG | - | chr2_1:6227184-6227203 | None:intergenic | 60.0% | |
| TTCGTCTTACGGCGGGACCT+AGG | - | chr2_1:6227184-6227203 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 6225941 | 6227316 | 6225941 | ID=Msa0190690;Name=Msa0190690 |
| chr2_1 | mRNA | 6225941 | 6227316 | 6225941 | ID=Msa0190690-mRNA-1;Parent=Msa0190690;Name=Msa0190690-mRNA-1;_AED=0.06;_eAED=0.06;_QI=99|1|1|1|1|1|3|108|177 |
| chr2_1 | exon | 6225941 | 6226138 | 6225941 | ID=Msa0190690-mRNA-1:exon:2811;Parent=Msa0190690-mRNA-1 |
| chr2_1 | exon | 6226349 | 6226554 | 6226349 | ID=Msa0190690-mRNA-1:exon:2812;Parent=Msa0190690-mRNA-1 |
| chr2_1 | exon | 6226980 | 6227316 | 6226980 | ID=Msa0190690-mRNA-1:exon:2813;Parent=Msa0190690-mRNA-1 |
| chr2_1 | five_prime_UTR | 6225941 | 6226039 | 6225941 | ID=Msa0190690-mRNA-1:five_prime_utr;Parent=Msa0190690-mRNA-1 |
| chr2_1 | CDS | 6226040 | 6226138 | 6226040 | ID=Msa0190690-mRNA-1:cds;Parent=Msa0190690-mRNA-1 |
| chr2_1 | CDS | 6226349 | 6226554 | 6226349 | ID=Msa0190690-mRNA-1:cds;Parent=Msa0190690-mRNA-1 |
| chr2_1 | CDS | 6226980 | 6227208 | 6226980 | ID=Msa0190690-mRNA-1:cds;Parent=Msa0190690-mRNA-1 |
| chr2_1 | three_prime_UTR | 6227209 | 6227316 | 6227209 | ID=Msa0190690-mRNA-1:three_prime_utr;Parent=Msa0190690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
