Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0193320 | XP_003593663.1 | 98.095 | 105 | 2 | 0 | 48 | 152 | 23 | 127 | 3.25e-69 | 215 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0193320 | sp|Q9SGP6|GRXC9_ARATH | 53.731 | 134 | 56 | 3 | 23 | 152 | 6 | 137 | 3.61e-42 | 139 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0193320 | A2Q531 | 98.095 | 105 | 2 | 0 | 48 | 152 | 23 | 127 | 1.55e-69 | 215 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0193320 | Msa0234590 | 0.898587 | 4.582944e-77 | -8.615850e-47 |
| Msa0193320 | Msa0836650 | 0.803397 | 3.555297e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0193320 | MtrunA17_Chr2g0282951 | 98.095 | 105 | 2 | 0 | 48 | 152 | 23 | 127 | 2.99e-73 | 215 |
| Msa0193320 | MtrunA17_Chr2g0325001 | 65.049 | 103 | 35 | 1 | 51 | 152 | 38 | 140 | 4.26e-45 | 144 |
| Msa0193320 | MtrunA17_Chr4g0040601 | 67.347 | 98 | 31 | 1 | 56 | 152 | 58 | 155 | 1.44e-43 | 141 |
| Msa0193320 | MtrunA17_Chr7g0224091 | 51.456 | 103 | 45 | 2 | 53 | 152 | 24 | 124 | 5.04e-31 | 108 |
| Msa0193320 | MtrunA17_Chr7g0222541 | 45.714 | 105 | 48 | 2 | 53 | 152 | 32 | 132 | 5.50e-28 | 100 |
| Msa0193320 | MtrunA17_Chr7g0222491 | 45.192 | 104 | 50 | 2 | 53 | 152 | 32 | 132 | 8.40e-28 | 100 |
| Msa0193320 | MtrunA17_Chr7g0222551 | 39.695 | 131 | 67 | 3 | 27 | 152 | 9 | 132 | 2.57e-27 | 99.0 |
| Msa0193320 | MtrunA17_Chr4g0066791 | 43.810 | 105 | 50 | 2 | 53 | 152 | 3 | 103 | 5.45e-25 | 92.0 |
| Msa0193320 | MtrunA17_Chr4g0066801 | 43.810 | 105 | 50 | 2 | 53 | 152 | 3 | 103 | 5.45e-25 | 92.0 |
| Msa0193320 | MtrunA17_Chr4g0066811 | 43.810 | 105 | 50 | 2 | 53 | 152 | 3 | 103 | 5.45e-25 | 92.0 |
| Msa0193320 | MtrunA17_Chr2g0286251 | 41.905 | 105 | 51 | 3 | 53 | 152 | 3 | 102 | 2.29e-23 | 88.2 |
| Msa0193320 | MtrunA17_Chr2g0303741 | 41.000 | 100 | 55 | 1 | 57 | 152 | 45 | 144 | 5.44e-22 | 85.9 |
| Msa0193320 | MtrunA17_Chr7g0268751 | 40.952 | 105 | 50 | 2 | 54 | 152 | 4 | 102 | 6.44e-22 | 84.3 |
| Msa0193320 | MtrunA17_Chr1g0151231 | 42.857 | 105 | 56 | 2 | 51 | 152 | 46 | 149 | 1.19e-21 | 85.1 |
| Msa0193320 | MtrunA17_Chr1g0195951 | 37.374 | 99 | 62 | 0 | 54 | 152 | 4 | 102 | 2.57e-21 | 82.8 |
| Msa0193320 | MtrunA17_Chr3g0135811 | 41.176 | 102 | 54 | 2 | 51 | 151 | 21 | 117 | 2.63e-20 | 80.5 |
| Msa0193320 | MtrunA17_Chr2g0286271 | 35.000 | 100 | 65 | 0 | 53 | 152 | 3 | 102 | 1.94e-19 | 77.8 |
| Msa0193320 | MtrunA17_Chr5g0434201 | 50.000 | 84 | 40 | 2 | 71 | 152 | 40 | 123 | 2.53e-19 | 78.2 |
| Msa0193320 | MtrunA17_Chr1g0195981 | 39.785 | 93 | 56 | 0 | 53 | 145 | 3 | 95 | 3.01e-19 | 77.4 |
| Msa0193320 | MtrunA17_Chr1g0195991 | 37.634 | 93 | 58 | 0 | 53 | 145 | 3 | 95 | 6.14e-19 | 76.6 |
| Msa0193320 | MtrunA17_Chr7g0268711 | 38.710 | 93 | 57 | 0 | 53 | 145 | 3 | 95 | 1.05e-18 | 76.3 |
| Msa0193320 | MtrunA17_Chr7g0268731 | 36.190 | 105 | 58 | 2 | 53 | 152 | 3 | 103 | 1.22e-18 | 75.9 |
| Msa0193320 | MtrunA17_Chr7g0268721 | 35.238 | 105 | 59 | 2 | 53 | 152 | 3 | 103 | 7.31e-18 | 73.9 |
| Msa0193320 | MtrunA17_Chr8g0376641 | 47.619 | 84 | 42 | 2 | 71 | 152 | 40 | 123 | 8.20e-17 | 71.6 |
| Msa0193320 | MtrunA17_Chr1g0195971 | 33.333 | 105 | 60 | 3 | 53 | 152 | 3 | 102 | 9.94e-14 | 63.2 |
| Msa0193320 | MtrunA17_Chr3g0117411 | 38.202 | 89 | 53 | 2 | 63 | 150 | 30 | 117 | 5.82e-13 | 61.6 |
| Msa0193320 | MtrunA17_Chr2g0282961 | 100.000 | 48 | 0 | 0 | 1 | 48 | 1 | 48 | 8.68e-13 | 64.7 |
| Msa0193320 | MtrunA17_Chr3g0117391 | 35.644 | 101 | 60 | 3 | 53 | 150 | 22 | 120 | 6.55e-12 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0193320 | AT1G28480.1 | 53.731 | 134 | 56 | 3 | 23 | 152 | 6 | 137 | 3.67e-43 | 139 |
| Msa0193320 | AT5G14070.1 | 44.954 | 109 | 52 | 2 | 52 | 152 | 32 | 140 | 5.47e-30 | 106 |
| Msa0193320 | AT1G03850.2 | 45.536 | 112 | 55 | 2 | 41 | 152 | 45 | 150 | 4.60e-27 | 99.4 |
| Msa0193320 | AT3G02000.1 | 44.340 | 106 | 53 | 1 | 53 | 152 | 31 | 136 | 4.15e-26 | 96.3 |
| Msa0193320 | AT4G33040.1 | 45.794 | 107 | 52 | 2 | 51 | 152 | 39 | 144 | 1.85e-24 | 92.4 |
| Msa0193320 | AT4G15700.1 | 44.762 | 105 | 48 | 3 | 53 | 152 | 3 | 102 | 5.16e-24 | 90.1 |
| Msa0193320 | AT4G15690.1 | 43.810 | 105 | 49 | 3 | 53 | 152 | 3 | 102 | 1.00e-23 | 89.4 |
| Msa0193320 | AT4G15680.1 | 39.000 | 100 | 61 | 0 | 53 | 152 | 3 | 102 | 1.04e-22 | 86.7 |
| Msa0193320 | AT5G18600.1 | 41.414 | 99 | 58 | 0 | 54 | 152 | 4 | 102 | 1.26e-22 | 86.7 |
| Msa0193320 | AT4G15660.1 | 41.905 | 105 | 51 | 3 | 53 | 152 | 3 | 102 | 1.38e-22 | 86.3 |
| Msa0193320 | AT4G15670.1 | 38.000 | 100 | 62 | 0 | 53 | 152 | 3 | 102 | 3.66e-22 | 85.5 |
| Msa0193320 | AT3G21460.1 | 44.231 | 104 | 48 | 3 | 54 | 152 | 4 | 102 | 1.33e-20 | 81.3 |
| Msa0193320 | AT5G11930.1 | 40.777 | 103 | 49 | 3 | 51 | 151 | 55 | 147 | 3.81e-20 | 81.6 |
| Msa0193320 | AT1G03850.1 | 40.566 | 106 | 57 | 2 | 41 | 146 | 45 | 144 | 5.02e-20 | 81.6 |
| Msa0193320 | AT3G62950.1 | 36.190 | 105 | 58 | 2 | 53 | 152 | 3 | 103 | 6.40e-20 | 79.7 |
| Msa0193320 | AT2G30540.1 | 40.860 | 93 | 55 | 0 | 53 | 145 | 3 | 95 | 1.46e-19 | 78.6 |
| Msa0193320 | AT1G06830.1 | 40.860 | 93 | 55 | 0 | 53 | 145 | 3 | 95 | 2.35e-19 | 78.2 |
| Msa0193320 | AT2G47880.1 | 39.785 | 93 | 56 | 0 | 53 | 145 | 3 | 95 | 1.06e-18 | 76.6 |
| Msa0193320 | AT2G47870.1 | 35.238 | 105 | 59 | 2 | 53 | 152 | 3 | 103 | 2.11e-18 | 75.9 |
| Msa0193320 | AT3G62960.1 | 38.710 | 93 | 57 | 0 | 53 | 145 | 3 | 95 | 3.43e-17 | 72.4 |
| Msa0193320 | AT3G62930.1 | 31.373 | 102 | 66 | 2 | 53 | 152 | 3 | 102 | 4.86e-15 | 67.0 |
| Msa0193320 | AT1G03020.1 | 29.000 | 100 | 71 | 0 | 53 | 152 | 3 | 102 | 6.85e-15 | 66.6 |
| Msa0193320 | AT5G63030.1 | 37.895 | 95 | 57 | 2 | 57 | 150 | 25 | 118 | 2.88e-12 | 60.5 |
Find 45 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCGAAACCGTTCAGTTTC+CGG | 0.216471 | 2_1:+9162957 | Msa0193320:CDS |
| GTCATGGCTACTCATATTTC+AGG | 0.236510 | 2_1:+9163021 | Msa0193320:CDS |
| TACTCATATTTCAGGTGAAT+TGG | 0.305467 | 2_1:+9163029 | Msa0193320:CDS |
| GAAAACGCAGTTATTATCAT+TGG | 0.318460 | 2_1:+9162808 | Msa0193320:CDS |
| CGGAGGTGTTGGTGGATAGT+TGG | 0.347866 | 2_1:-9162939 | None:intergenic |
| GAAGAAGAAATAGCTGAATA+TGG | 0.353827 | 2_1:-9162141 | None:intergenic |
| TGGGAAGTTGCTTGGTGGGT+TGG | 0.357470 | 2_1:+9162993 | Msa0193320:CDS |
| CGCCGGAAACTGAACGGTTT+CGG | 0.371997 | 2_1:-9162959 | None:intergenic |
| TTCGTTGGTGGGAAGTTGCT+TGG | 0.411854 | 2_1:+9162985 | Msa0193320:CDS |
| GGGCAGCAACGGCAGTTTCA+TGG | 0.413065 | 2_1:-9162918 | None:intergenic |
| CACTTCTGCTTCAGCAGCTA+TGG | 0.423134 | 2_1:+9162191 | Msa0193320:CDS |
| CAGTTTCCGGCGGTGTTCGT+TGG | 0.424655 | 2_1:+9162970 | Msa0193320:CDS |
| TTGTTGTTACGTTGGATTCA+AGG | 0.430107 | 2_1:-9162777 | None:intergenic |
| TTTCCGGCGGTGTTCGTTGG+TGG | 0.452461 | 2_1:+9162973 | Msa0193320:CDS |
| CCTCCACCTCTTCCTCCTCA+AGG | 0.458803 | 2_1:+9162219 | Msa0193320:CDS |
| TCATCTTCTTCTTCTCACTC+TGG | 0.460997 | 2_1:+9162162 | Msa0193320:CDS |
| TTGGTGGGAAGTTGCTTGGT+GGG | 0.461042 | 2_1:+9162989 | Msa0193320:CDS |
| GGAGGTGTTGGTGGATAGTT+GGG | 0.462970 | 2_1:-9162938 | None:intergenic |
| TTCCGGCGGTGTTCGTTGGT+GGG | 0.487798 | 2_1:+9162974 | Msa0193320:CDS |
| AACGGTTTCGGAGGTGTTGG+TGG | 0.499025 | 2_1:-9162947 | None:intergenic |
| GTTCCTATATTAAAAGATGC+TGG | 0.501499 | 2_1:+9163051 | Msa0193320:CDS |
| AAAAGATTGTTACAAGGTCT+AGG | 0.503022 | 2_1:+9162862 | Msa0193320:CDS |
| GTTGGTGGGAAGTTGCTTGG+TGG | 0.513182 | 2_1:+9162988 | Msa0193320:CDS |
| CCTTGAGGAGGAAGAGGTGG+AGG | 0.520375 | 2_1:-9162219 | None:intergenic |
| CTGAACGGTTTCGGAGGTGT+TGG | 0.524370 | 2_1:-9162950 | None:intergenic |
| TCTTGATCAACCTCGTAGAC+AGG | 0.528624 | 2_1:-9162895 | None:intergenic |
| ACAGAACCTTGAGGAGGAAG+AGG | 0.550075 | 2_1:-9162225 | None:intergenic |
| GGTGGATAGTTGGGCAGCAA+CGG | 0.555191 | 2_1:-9162929 | None:intergenic |
| TTCCCACCAACGAACACCGC+CGG | 0.567247 | 2_1:-9162976 | None:intergenic |
| TGAAACCATTGTTGTTACGT+TGG | 0.567408 | 2_1:-9162785 | None:intergenic |
| GAACCTTGAGGAGGAAGAGG+TGG | 0.567888 | 2_1:-9162222 | None:intergenic |
| GTTGTCAAAAGATTGTTACA+AGG | 0.611660 | 2_1:+9162856 | Msa0193320:CDS |
| TGAATCCAACGTAACAACAA+TGG | 0.615946 | 2_1:+9162780 | Msa0193320:CDS |
| TGATCAACCTCGTAGACAGG+AGG | 0.639092 | 2_1:-9162892 | None:intergenic |
| GAACACCGCCGGAAACTGAA+CGG | 0.641793 | 2_1:-9162965 | None:intergenic |
| CGGAAACTGAACGGTTTCGG+AGG | 0.643135 | 2_1:-9162956 | None:intergenic |
| CGAAACCGTTCAGTTTCCGG+CGG | 0.644599 | 2_1:+9162960 | Msa0193320:CDS |
| TGGTGGGTTGGAAAGAGTCA+TGG | 0.645511 | 2_1:+9163005 | Msa0193320:CDS |
| GATCAACCTCGTAGACAGGA+GGG | 0.651727 | 2_1:-9162891 | None:intergenic |
| CATAACTAGTCAAAGCCACA+AGG | 0.660326 | 2_1:-9163076 | None:intergenic |
| TAAAAGATGCTGGTGCCTTG+TGG | 0.660431 | 2_1:+9163061 | Msa0193320:CDS |
| GTTATTATCATTGGAACACG+AGG | 0.684410 | 2_1:+9162817 | Msa0193320:CDS |
| AGTCAACCCTCCTGTCTACG+AGG | 0.688227 | 2_1:+9162885 | Msa0193320:CDS |
| AAACAAACAGAACCTTGAGG+AGG | 0.697531 | 2_1:-9162231 | None:intergenic |
| AATCGATCTCAACACTACAG+AGG | 0.712921 | 2_1:+9162107 | Msa0193320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGATATAAAATAAATTTAC+AGG | - | chr2_1:9162390-9162409 | None:intergenic | 10.0% |
| !! | ATGATATAAAATAAATTTAC+AGG | - | chr2_1:9162390-9162409 | None:intergenic | 10.0% |
| !! | ATGGAAATATAAAAACAGAA+GGG | - | chr2_1:9162605-9162624 | None:intergenic | 20.0% |
| !! | ATGGAAATATAAAAACAGAA+GGG | - | chr2_1:9162605-9162624 | None:intergenic | 20.0% |
| ! | ATCTATCATCAATAAATGAG+AGG | + | chr2_1:9162408-9162427 | Msa0193320:intron | 25.0% |
| ! | TGGAAATATAAAAACAGAAG+GGG | - | chr2_1:9162604-9162623 | None:intergenic | 25.0% |
| ! | GATGGAAATATAAAAACAGA+AGG | - | chr2_1:9162606-9162625 | None:intergenic | 25.0% |
| ! | ATCTATCATCAATAAATGAG+AGG | + | chr2_1:9162408-9162427 | Msa0193320:intron | 25.0% |
| ! | TGGAAATATAAAAACAGAAG+GGG | - | chr2_1:9162604-9162623 | None:intergenic | 25.0% |
| ! | GATGGAAATATAAAAACAGA+AGG | - | chr2_1:9162606-9162625 | None:intergenic | 25.0% |
| GAAGAAGAAATAGCTGAATA+TGG | - | chr2_1:9162144-9162163 | None:intergenic | 30.0% | |
| ! | ATAAATGAGAGGATGCATTT+TGG | + | chr2_1:9162419-9162438 | Msa0193320:intron | 30.0% |
| TTGTTCTATATGGAATTGCT+TGG | - | chr2_1:9162711-9162730 | None:intergenic | 30.0% | |
| GAAAACGCAGTTATTATCAT+TGG | + | chr2_1:9162808-9162827 | Msa0193320:CDS | 30.0% | |
| ! | GTAACAATCTTTTGACAACA+TGG | - | chr2_1:9162855-9162874 | None:intergenic | 30.0% |
| GTTGTCAAAAGATTGTTACA+AGG | + | chr2_1:9162856-9162875 | Msa0193320:CDS | 30.0% | |
| AAAAGATTGTTACAAGGTCT+AGG | + | chr2_1:9162862-9162881 | Msa0193320:CDS | 30.0% | |
| ! | TACTCATATTTCAGGTGAAT+TGG | + | chr2_1:9163029-9163048 | Msa0193320:CDS | 30.0% |
| GTTCCTATATTAAAAGATGC+TGG | + | chr2_1:9163051-9163070 | Msa0193320:CDS | 30.0% | |
| GAAGAAGAAATAGCTGAATA+TGG | - | chr2_1:9162144-9162163 | None:intergenic | 30.0% | |
| ! | ATAAATGAGAGGATGCATTT+TGG | + | chr2_1:9162419-9162438 | Msa0193320:intron | 30.0% |
| TTGTTCTATATGGAATTGCT+TGG | - | chr2_1:9162711-9162730 | None:intergenic | 30.0% | |
| GAAAACGCAGTTATTATCAT+TGG | + | chr2_1:9162808-9162827 | Msa0193320:CDS | 30.0% | |
| ! | GTAACAATCTTTTGACAACA+TGG | - | chr2_1:9162855-9162874 | None:intergenic | 30.0% |
| GTTGTCAAAAGATTGTTACA+AGG | + | chr2_1:9162856-9162875 | Msa0193320:CDS | 30.0% | |
| AAAAGATTGTTACAAGGTCT+AGG | + | chr2_1:9162862-9162881 | Msa0193320:CDS | 30.0% | |
| ! | TACTCATATTTCAGGTGAAT+TGG | + | chr2_1:9163029-9163048 | Msa0193320:CDS | 30.0% |
| GTTCCTATATTAAAAGATGC+TGG | + | chr2_1:9163051-9163070 | Msa0193320:CDS | 30.0% | |
| TATGTAACATGAGGACATCT+TGG | + | chr2_1:9162463-9162482 | Msa0193320:intron | 35.0% | |
| !! | ACATCTTGGCTTTTCTAACA+TGG | + | chr2_1:9162477-9162496 | Msa0193320:intron | 35.0% |
| !! | CATCTTGGCTTTTCTAACAT+GGG | + | chr2_1:9162478-9162497 | Msa0193320:intron | 35.0% |
| ! | CATGTTGCGTCATAGAATTT+TGG | - | chr2_1:9162522-9162541 | None:intergenic | 35.0% |
| AATTGCTTGGTACATGATGA+TGG | - | chr2_1:9162698-9162717 | None:intergenic | 35.0% | |
| ! | TTGTTGTTACGTTGGATTCA+AGG | - | chr2_1:9162780-9162799 | None:intergenic | 35.0% |
| TGAATCCAACGTAACAACAA+TGG | + | chr2_1:9162780-9162799 | Msa0193320:CDS | 35.0% | |
| ! | TGAAACCATTGTTGTTACGT+TGG | - | chr2_1:9162788-9162807 | None:intergenic | 35.0% |
| GTTATTATCATTGGAACACG+AGG | + | chr2_1:9162817-9162836 | Msa0193320:CDS | 35.0% | |
| ! | GCACCAGCATCTTTTAATAT+AGG | - | chr2_1:9163057-9163076 | None:intergenic | 35.0% |
| TATGTAACATGAGGACATCT+TGG | + | chr2_1:9162463-9162482 | Msa0193320:intron | 35.0% | |
| !! | ACATCTTGGCTTTTCTAACA+TGG | + | chr2_1:9162477-9162496 | Msa0193320:intron | 35.0% |
| !! | CATCTTGGCTTTTCTAACAT+GGG | + | chr2_1:9162478-9162497 | Msa0193320:intron | 35.0% |
| ! | CATGTTGCGTCATAGAATTT+TGG | - | chr2_1:9162522-9162541 | None:intergenic | 35.0% |
| AATTGCTTGGTACATGATGA+TGG | - | chr2_1:9162698-9162717 | None:intergenic | 35.0% | |
| ! | TTGTTGTTACGTTGGATTCA+AGG | - | chr2_1:9162780-9162799 | None:intergenic | 35.0% |
| TGAATCCAACGTAACAACAA+TGG | + | chr2_1:9162780-9162799 | Msa0193320:CDS | 35.0% | |
| ! | TGAAACCATTGTTGTTACGT+TGG | - | chr2_1:9162788-9162807 | None:intergenic | 35.0% |
| GTTATTATCATTGGAACACG+AGG | + | chr2_1:9162817-9162836 | Msa0193320:CDS | 35.0% | |
| ! | GCACCAGCATCTTTTAATAT+AGG | - | chr2_1:9163057-9163076 | None:intergenic | 35.0% |
| AATCGATCTCAACACTACAG+AGG | + | chr2_1:9162107-9162126 | Msa0193320:CDS | 40.0% | |
| TCATCTTCTTCTTCTCACTC+TGG | + | chr2_1:9162162-9162181 | Msa0193320:CDS | 40.0% | |
| AAACAAACAGAACCTTGAGG+AGG | - | chr2_1:9162234-9162253 | None:intergenic | 40.0% | |
| TCCTCAAGGTTCTGTTTGTT+TGG | + | chr2_1:9162233-9162252 | Msa0193320:intron | 40.0% | |
| TCCAAACAAACAGAACCTTG+AGG | - | chr2_1:9162237-9162256 | None:intergenic | 40.0% | |
| AACACTGCGTATGTAACATG+AGG | + | chr2_1:9162454-9162473 | Msa0193320:intron | 40.0% | |
| GCAGTTATGTCTTACGTCAT+CGG | - | chr2_1:9162561-9162580 | None:intergenic | 40.0% | |
| GAAAATGGAGAGAGGAATGA+TGG | - | chr2_1:9162624-9162643 | None:intergenic | 40.0% | |
| GTGGAGACACTTGTTCTATA+TGG | - | chr2_1:9162721-9162740 | None:intergenic | 40.0% | |
| AACCTACCAATAATCACCAC+AGG | + | chr2_1:9162751-9162770 | Msa0193320:intron | 40.0% | |
| TTCCTGTGGTGATTATTGGT+AGG | - | chr2_1:9162756-9162775 | None:intergenic | 40.0% | |
| AGGATTCCTGTGGTGATTAT+TGG | - | chr2_1:9162760-9162779 | None:intergenic | 40.0% | |
| GTCATGGCTACTCATATTTC+AGG | + | chr2_1:9163021-9163040 | Msa0193320:CDS | 40.0% | |
| AATCGATCTCAACACTACAG+AGG | + | chr2_1:9162107-9162126 | Msa0193320:CDS | 40.0% | |
| TCATCTTCTTCTTCTCACTC+TGG | + | chr2_1:9162162-9162181 | Msa0193320:CDS | 40.0% | |
| AAACAAACAGAACCTTGAGG+AGG | - | chr2_1:9162234-9162253 | None:intergenic | 40.0% | |
| TCCTCAAGGTTCTGTTTGTT+TGG | + | chr2_1:9162233-9162252 | Msa0193320:intron | 40.0% | |
| TCCAAACAAACAGAACCTTG+AGG | - | chr2_1:9162237-9162256 | None:intergenic | 40.0% | |
| AACACTGCGTATGTAACATG+AGG | + | chr2_1:9162454-9162473 | Msa0193320:intron | 40.0% | |
| GCAGTTATGTCTTACGTCAT+CGG | - | chr2_1:9162561-9162580 | None:intergenic | 40.0% | |
| GAAAATGGAGAGAGGAATGA+TGG | - | chr2_1:9162624-9162643 | None:intergenic | 40.0% | |
| GTGGAGACACTTGTTCTATA+TGG | - | chr2_1:9162721-9162740 | None:intergenic | 40.0% | |
| AACCTACCAATAATCACCAC+AGG | + | chr2_1:9162751-9162770 | Msa0193320:intron | 40.0% | |
| TTCCTGTGGTGATTATTGGT+AGG | - | chr2_1:9162756-9162775 | None:intergenic | 40.0% | |
| AGGATTCCTGTGGTGATTAT+TGG | - | chr2_1:9162760-9162779 | None:intergenic | 40.0% | |
| GTCATGGCTACTCATATTTC+AGG | + | chr2_1:9163021-9163040 | Msa0193320:CDS | 40.0% | |
| ! | CTTACGTCATCGGTTACTGT+GGG | - | chr2_1:9162551-9162570 | None:intergenic | 45.0% |
| ! | TCTTACGTCATCGGTTACTG+TGG | - | chr2_1:9162552-9162571 | None:intergenic | 45.0% |
| GAGAATTGGTGAGAAGGAGA+GGG | - | chr2_1:9162649-9162668 | None:intergenic | 45.0% | |
| AGAGAATTGGTGAGAAGGAG+AGG | - | chr2_1:9162650-9162669 | None:intergenic | 45.0% | |
| GAGAGAGAGAATTGGTGAGA+AGG | - | chr2_1:9162655-9162674 | None:intergenic | 45.0% | |
| GAGAGAGAGAGAGAGAGAAT+TGG | - | chr2_1:9162663-9162682 | None:intergenic | 45.0% | |
| GTTGGATTCAAGGATTCCTG+TGG | - | chr2_1:9162770-9162789 | None:intergenic | 45.0% | |
| TCTTGATCAACCTCGTAGAC+AGG | - | chr2_1:9162898-9162917 | None:intergenic | 45.0% | |
| TAAAAGATGCTGGTGCCTTG+TGG | + | chr2_1:9163061-9163080 | Msa0193320:CDS | 45.0% | |
| ! | CTTACGTCATCGGTTACTGT+GGG | - | chr2_1:9162551-9162570 | None:intergenic | 45.0% |
| ! | TCTTACGTCATCGGTTACTG+TGG | - | chr2_1:9162552-9162571 | None:intergenic | 45.0% |
| GAGAATTGGTGAGAAGGAGA+GGG | - | chr2_1:9162649-9162668 | None:intergenic | 45.0% | |
| AGAGAATTGGTGAGAAGGAG+AGG | - | chr2_1:9162650-9162669 | None:intergenic | 45.0% | |
| GAGAGAGAGAATTGGTGAGA+AGG | - | chr2_1:9162655-9162674 | None:intergenic | 45.0% | |
| GAGAGAGAGAGAGAGAGAAT+TGG | - | chr2_1:9162663-9162682 | None:intergenic | 45.0% | |
| GTTGGATTCAAGGATTCCTG+TGG | - | chr2_1:9162770-9162789 | None:intergenic | 45.0% | |
| TCTTGATCAACCTCGTAGAC+AGG | - | chr2_1:9162898-9162917 | None:intergenic | 45.0% | |
| TAAAAGATGCTGGTGCCTTG+TGG | + | chr2_1:9163061-9163080 | Msa0193320:CDS | 45.0% | |
| CACTTCTGCTTCAGCAGCTA+TGG | + | chr2_1:9162191-9162210 | Msa0193320:CDS | 50.0% | |
| ACAGAACCTTGAGGAGGAAG+AGG | - | chr2_1:9162228-9162247 | None:intergenic | 50.0% | |
| GGAGACGACTCTAACGTCAA+CGG | - | chr2_1:9162583-9162602 | None:intergenic | 50.0% | |
| AGAGGGAGGAAAATGGAGAG+AGG | - | chr2_1:9162632-9162651 | None:intergenic | 50.0% | |
| GAGAAGGAGAGGGAGGAAAA+TGG | - | chr2_1:9162639-9162658 | None:intergenic | 50.0% | |
| AATTGGTGAGAAGGAGAGGG+AGG | - | chr2_1:9162646-9162665 | None:intergenic | 50.0% | |
| TGGTAGGTTACGTGTGACTG+TGG | - | chr2_1:9162740-9162759 | None:intergenic | 50.0% | |
| GATCAACCTCGTAGACAGGA+GGG | - | chr2_1:9162894-9162913 | None:intergenic | 50.0% | |
| TGATCAACCTCGTAGACAGG+AGG | - | chr2_1:9162895-9162914 | None:intergenic | 50.0% | |
| !! | GGAGGTGTTGGTGGATAGTT+GGG | - | chr2_1:9162941-9162960 | None:intergenic | 50.0% |
| CTCCGAAACCGTTCAGTTTC+CGG | + | chr2_1:9162957-9162976 | Msa0193320:CDS | 50.0% | |
| ! | TTCGTTGGTGGGAAGTTGCT+TGG | + | chr2_1:9162985-9163004 | Msa0193320:CDS | 50.0% |
| TTGGTGGGAAGTTGCTTGGT+GGG | + | chr2_1:9162989-9163008 | Msa0193320:CDS | 50.0% | |
| !! | TGGTGGGTTGGAAAGAGTCA+TGG | + | chr2_1:9163005-9163024 | Msa0193320:CDS | 50.0% |
| CACTTCTGCTTCAGCAGCTA+TGG | + | chr2_1:9162191-9162210 | Msa0193320:CDS | 50.0% | |
| ACAGAACCTTGAGGAGGAAG+AGG | - | chr2_1:9162228-9162247 | None:intergenic | 50.0% | |
| GGAGACGACTCTAACGTCAA+CGG | - | chr2_1:9162583-9162602 | None:intergenic | 50.0% | |
| AGAGGGAGGAAAATGGAGAG+AGG | - | chr2_1:9162632-9162651 | None:intergenic | 50.0% | |
| GAGAAGGAGAGGGAGGAAAA+TGG | - | chr2_1:9162639-9162658 | None:intergenic | 50.0% | |
| AATTGGTGAGAAGGAGAGGG+AGG | - | chr2_1:9162646-9162665 | None:intergenic | 50.0% | |
| TGGTAGGTTACGTGTGACTG+TGG | - | chr2_1:9162740-9162759 | None:intergenic | 50.0% | |
| GATCAACCTCGTAGACAGGA+GGG | - | chr2_1:9162894-9162913 | None:intergenic | 50.0% | |
| TGATCAACCTCGTAGACAGG+AGG | - | chr2_1:9162895-9162914 | None:intergenic | 50.0% | |
| !! | GGAGGTGTTGGTGGATAGTT+GGG | - | chr2_1:9162941-9162960 | None:intergenic | 50.0% |
| CTCCGAAACCGTTCAGTTTC+CGG | + | chr2_1:9162957-9162976 | Msa0193320:CDS | 50.0% | |
| ! | TTCGTTGGTGGGAAGTTGCT+TGG | + | chr2_1:9162985-9163004 | Msa0193320:CDS | 50.0% |
| TTGGTGGGAAGTTGCTTGGT+GGG | + | chr2_1:9162989-9163008 | Msa0193320:CDS | 50.0% | |
| !! | TGGTGGGTTGGAAAGAGTCA+TGG | + | chr2_1:9163005-9163024 | Msa0193320:CDS | 50.0% |
| GAACCTTGAGGAGGAAGAGG+TGG | - | chr2_1:9162225-9162244 | None:intergenic | 55.0% | |
| AGTCAACCCTCCTGTCTACG+AGG | + | chr2_1:9162885-9162904 | Msa0193320:CDS | 55.0% | |
| GGTGGATAGTTGGGCAGCAA+CGG | - | chr2_1:9162932-9162951 | None:intergenic | 55.0% | |
| !! | CGGAGGTGTTGGTGGATAGT+TGG | - | chr2_1:9162942-9162961 | None:intergenic | 55.0% |
| !! | AACGGTTTCGGAGGTGTTGG+TGG | - | chr2_1:9162950-9162969 | None:intergenic | 55.0% |
| ! | CTGAACGGTTTCGGAGGTGT+TGG | - | chr2_1:9162953-9162972 | None:intergenic | 55.0% |
| CGGAAACTGAACGGTTTCGG+AGG | - | chr2_1:9162959-9162978 | None:intergenic | 55.0% | |
| CGCCGGAAACTGAACGGTTT+CGG | - | chr2_1:9162962-9162981 | None:intergenic | 55.0% | |
| CGAAACCGTTCAGTTTCCGG+CGG | + | chr2_1:9162960-9162979 | Msa0193320:CDS | 55.0% | |
| GAACACCGCCGGAAACTGAA+CGG | - | chr2_1:9162968-9162987 | None:intergenic | 55.0% | |
| ! | GTTGGTGGGAAGTTGCTTGG+TGG | + | chr2_1:9162988-9163007 | Msa0193320:CDS | 55.0% |
| ! | TGGGAAGTTGCTTGGTGGGT+TGG | + | chr2_1:9162993-9163012 | Msa0193320:CDS | 55.0% |
| GAACCTTGAGGAGGAAGAGG+TGG | - | chr2_1:9162225-9162244 | None:intergenic | 55.0% | |
| AGTCAACCCTCCTGTCTACG+AGG | + | chr2_1:9162885-9162904 | Msa0193320:CDS | 55.0% | |
| GGTGGATAGTTGGGCAGCAA+CGG | - | chr2_1:9162932-9162951 | None:intergenic | 55.0% | |
| !! | CGGAGGTGTTGGTGGATAGT+TGG | - | chr2_1:9162942-9162961 | None:intergenic | 55.0% |
| !! | AACGGTTTCGGAGGTGTTGG+TGG | - | chr2_1:9162950-9162969 | None:intergenic | 55.0% |
| ! | CTGAACGGTTTCGGAGGTGT+TGG | - | chr2_1:9162953-9162972 | None:intergenic | 55.0% |
| CGGAAACTGAACGGTTTCGG+AGG | - | chr2_1:9162959-9162978 | None:intergenic | 55.0% | |
| CGCCGGAAACTGAACGGTTT+CGG | - | chr2_1:9162962-9162981 | None:intergenic | 55.0% | |
| CGAAACCGTTCAGTTTCCGG+CGG | + | chr2_1:9162960-9162979 | Msa0193320:CDS | 55.0% | |
| GAACACCGCCGGAAACTGAA+CGG | - | chr2_1:9162968-9162987 | None:intergenic | 55.0% | |
| ! | GTTGGTGGGAAGTTGCTTGG+TGG | + | chr2_1:9162988-9163007 | Msa0193320:CDS | 55.0% |
| ! | TGGGAAGTTGCTTGGTGGGT+TGG | + | chr2_1:9162993-9163012 | Msa0193320:CDS | 55.0% |
| CCTTGAGGAGGAAGAGGTGG+AGG | - | chr2_1:9162222-9162241 | None:intergenic | 60.0% | |
| CCTCCACCTCTTCCTCCTCA+AGG | + | chr2_1:9162219-9162238 | Msa0193320:CDS | 60.0% | |
| GGGCAGCAACGGCAGTTTCA+TGG | - | chr2_1:9162921-9162940 | None:intergenic | 60.0% | |
| CAGTTTCCGGCGGTGTTCGT+TGG | + | chr2_1:9162970-9162989 | Msa0193320:CDS | 60.0% | |
| TTTCCGGCGGTGTTCGTTGG+TGG | + | chr2_1:9162973-9162992 | Msa0193320:CDS | 60.0% | |
| TTCCGGCGGTGTTCGTTGGT+GGG | + | chr2_1:9162974-9162993 | Msa0193320:CDS | 60.0% | |
| TTCCCACCAACGAACACCGC+CGG | - | chr2_1:9162979-9162998 | None:intergenic | 60.0% | |
| CCTTGAGGAGGAAGAGGTGG+AGG | - | chr2_1:9162222-9162241 | None:intergenic | 60.0% | |
| CCTCCACCTCTTCCTCCTCA+AGG | + | chr2_1:9162219-9162238 | Msa0193320:CDS | 60.0% | |
| GGGCAGCAACGGCAGTTTCA+TGG | - | chr2_1:9162921-9162940 | None:intergenic | 60.0% | |
| CAGTTTCCGGCGGTGTTCGT+TGG | + | chr2_1:9162970-9162989 | Msa0193320:CDS | 60.0% | |
| TTTCCGGCGGTGTTCGTTGG+TGG | + | chr2_1:9162973-9162992 | Msa0193320:CDS | 60.0% | |
| TTCCGGCGGTGTTCGTTGGT+GGG | + | chr2_1:9162974-9162993 | Msa0193320:CDS | 60.0% | |
| TTCCCACCAACGAACACCGC+CGG | - | chr2_1:9162979-9162998 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 9162099 | 9163089 | 9162099 | ID=Msa0193320;Name=Msa0193320 |
| chr2_1 | mRNA | 9162099 | 9163089 | 9162099 | ID=Msa0193320-mRNA-1;Parent=Msa0193320;Name=Msa0193320-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0|0|0.5|1|1|2|0|152 |
| chr2_1 | exon | 9162099 | 9162240 | 9162099 | ID=Msa0193320-mRNA-1:exon:4208;Parent=Msa0193320-mRNA-1 |
| chr2_1 | exon | 9162773 | 9163089 | 9162773 | ID=Msa0193320-mRNA-1:exon:4209;Parent=Msa0193320-mRNA-1 |
| chr2_1 | CDS | 9162099 | 9162240 | 9162099 | ID=Msa0193320-mRNA-1:cds;Parent=Msa0193320-mRNA-1 |
| chr2_1 | CDS | 9162773 | 9163089 | 9162773 | ID=Msa0193320-mRNA-1:cds;Parent=Msa0193320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
