Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0234590 | XP_003593663.1 | 97.656 | 128 | 2 | 1 | 14 | 141 | 1 | 127 | 1.15e-84 | 253 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0234590 | sp|Q9SGP6|GRXC9_ARATH | 54.015 | 137 | 58 | 2 | 9 | 141 | 2 | 137 | 5.39e-42 | 139 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0234590 | A2Q531 | 97.656 | 128 | 2 | 1 | 14 | 141 | 1 | 127 | 5.49e-85 | 253 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001380 | Msa0234590 | 0.819033 | 1.436237e-52 | -8.615850e-47 |
| Msa0186320 | Msa0234590 | 0.801337 | 9.443875e-49 | -8.615850e-47 |
| Msa0193320 | Msa0234590 | 0.898587 | 4.582944e-77 | -8.615850e-47 |
| Msa0234590 | Msa0313400 | 0.901878 | 1.716063e-78 | -8.615850e-47 |
| Msa0234590 | Msa0408340 | 0.802205 | 6.264638e-49 | -8.615850e-47 |
| Msa0234590 | Msa0466010 | 0.818660 | 1.745561e-52 | -8.615850e-47 |
| Msa0234590 | Msa0524330 | 0.804343 | 2.260462e-49 | -8.615850e-47 |
| Msa0234590 | Msa0524440 | 0.825416 | 4.743340e-54 | -8.615850e-47 |
| Msa0234590 | Msa0580920 | 0.812769 | 3.589453e-51 | -8.615850e-47 |
| Msa0234590 | Msa0714990 | 0.817096 | 3.937211e-52 | -8.615850e-47 |
| Msa0234590 | Msa0757020 | 0.819675 | 1.025562e-52 | -8.615850e-47 |
| Msa0234590 | Msa0836650 | 0.822022 | 2.958684e-53 | -8.615850e-47 |
| Msa0234590 | Msa1043120 | 0.811721 | 6.075914e-51 | -8.615850e-47 |
| Msa0234590 | Msa1234910 | 0.807495 | 4.916684e-50 | -8.615850e-47 |
| Msa0234590 | Msa1367530 | 0.808116 | 3.627677e-50 | -8.615850e-47 |
| Msa0234590 | Msa1408180 | 0.824671 | 7.112509e-54 | -8.615850e-47 |
| Msa0234590 | Msa1424630 | 0.800697 | 1.276332e-48 | -8.615850e-47 |
| Msa0234590 | Msa1430550 | 0.811032 | 8.576714e-51 | -8.615850e-47 |
| Msa0234590 | Msa1448980 | 0.827189 | 1.794446e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0234590 | MtrunA17_Chr2g0282951 | 97.656 | 128 | 2 | 1 | 14 | 141 | 1 | 127 | 1.06e-88 | 253 |
| Msa0234590 | MtrunA17_Chr2g0325001 | 53.901 | 141 | 51 | 3 | 14 | 141 | 1 | 140 | 5.99e-46 | 146 |
| Msa0234590 | MtrunA17_Chr4g0040601 | 51.613 | 155 | 48 | 4 | 14 | 141 | 1 | 155 | 8.88e-45 | 143 |
| Msa0234590 | MtrunA17_Chr7g0224091 | 46.400 | 125 | 61 | 3 | 20 | 141 | 3 | 124 | 5.44e-31 | 107 |
| Msa0234590 | MtrunA17_Chr7g0222541 | 37.500 | 144 | 70 | 4 | 6 | 141 | 1 | 132 | 5.54e-28 | 100 |
| Msa0234590 | MtrunA17_Chr7g0222491 | 37.063 | 143 | 72 | 4 | 6 | 141 | 1 | 132 | 5.98e-28 | 100 |
| Msa0234590 | MtrunA17_Chr7g0222551 | 43.810 | 105 | 50 | 2 | 42 | 141 | 32 | 132 | 4.92e-27 | 97.8 |
| Msa0234590 | MtrunA17_Chr4g0066791 | 43.810 | 105 | 50 | 2 | 42 | 141 | 3 | 103 | 2.33e-25 | 92.8 |
| Msa0234590 | MtrunA17_Chr4g0066801 | 43.810 | 105 | 50 | 2 | 42 | 141 | 3 | 103 | 2.33e-25 | 92.8 |
| Msa0234590 | MtrunA17_Chr4g0066811 | 43.810 | 105 | 50 | 2 | 42 | 141 | 3 | 103 | 2.33e-25 | 92.8 |
| Msa0234590 | MtrunA17_Chr2g0286251 | 42.308 | 104 | 50 | 3 | 43 | 141 | 4 | 102 | 1.38e-23 | 88.2 |
| Msa0234590 | MtrunA17_Chr7g0268751 | 40.000 | 100 | 58 | 2 | 43 | 141 | 4 | 102 | 3.82e-22 | 84.3 |
| Msa0234590 | MtrunA17_Chr2g0303741 | 41.000 | 100 | 55 | 1 | 46 | 141 | 45 | 144 | 5.96e-22 | 85.1 |
| Msa0234590 | MtrunA17_Chr1g0151231 | 42.857 | 105 | 56 | 2 | 40 | 141 | 46 | 149 | 8.85e-22 | 85.1 |
| Msa0234590 | MtrunA17_Chr1g0195951 | 37.374 | 99 | 62 | 0 | 43 | 141 | 4 | 102 | 1.78e-21 | 82.8 |
| Msa0234590 | MtrunA17_Chr3g0135811 | 41.176 | 102 | 54 | 2 | 40 | 140 | 21 | 117 | 1.09e-20 | 81.3 |
| Msa0234590 | MtrunA17_Chr2g0286271 | 35.000 | 100 | 65 | 0 | 42 | 141 | 3 | 102 | 1.16e-19 | 78.2 |
| Msa0234590 | MtrunA17_Chr1g0195981 | 39.362 | 94 | 57 | 0 | 41 | 134 | 2 | 95 | 1.51e-19 | 77.8 |
| Msa0234590 | MtrunA17_Chr5g0434201 | 50.000 | 84 | 40 | 2 | 60 | 141 | 40 | 123 | 1.93e-19 | 78.2 |
| Msa0234590 | MtrunA17_Chr1g0195991 | 37.234 | 94 | 59 | 0 | 41 | 134 | 2 | 95 | 3.22e-19 | 77.0 |
| Msa0234590 | MtrunA17_Chr7g0268731 | 36.538 | 104 | 57 | 2 | 43 | 141 | 4 | 103 | 4.59e-19 | 76.6 |
| Msa0234590 | MtrunA17_Chr7g0268711 | 38.710 | 93 | 57 | 0 | 42 | 134 | 3 | 95 | 7.43e-19 | 76.3 |
| Msa0234590 | MtrunA17_Chr7g0268721 | 35.577 | 104 | 58 | 2 | 43 | 141 | 4 | 103 | 2.85e-18 | 74.7 |
| Msa0234590 | MtrunA17_Chr8g0376641 | 47.619 | 84 | 42 | 2 | 60 | 141 | 40 | 123 | 8.85e-17 | 71.2 |
| Msa0234590 | MtrunA17_Chr1g0195971 | 33.333 | 105 | 60 | 3 | 42 | 141 | 3 | 102 | 6.22e-14 | 63.5 |
| Msa0234590 | MtrunA17_Chr3g0117411 | 34.314 | 102 | 65 | 2 | 41 | 141 | 19 | 119 | 7.24e-13 | 61.2 |
| Msa0234590 | MtrunA17_Chr3g0117391 | 34.653 | 101 | 61 | 3 | 42 | 139 | 22 | 120 | 8.12e-12 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0234590 | AT1G28480.1 | 54.015 | 137 | 58 | 2 | 9 | 141 | 2 | 137 | 5.48e-43 | 139 |
| Msa0234590 | AT5G14070.1 | 42.400 | 125 | 63 | 3 | 25 | 141 | 17 | 140 | 9.95e-31 | 107 |
| Msa0234590 | AT1G03850.2 | 48.515 | 101 | 46 | 2 | 41 | 141 | 56 | 150 | 8.25e-27 | 98.2 |
| Msa0234590 | AT3G02000.1 | 43.478 | 115 | 57 | 2 | 33 | 141 | 24 | 136 | 1.64e-26 | 97.1 |
| Msa0234590 | AT4G33040.1 | 45.794 | 107 | 52 | 2 | 40 | 141 | 39 | 144 | 1.48e-24 | 92.4 |
| Msa0234590 | AT4G15700.1 | 44.762 | 105 | 48 | 3 | 42 | 141 | 3 | 102 | 3.13e-24 | 90.1 |
| Msa0234590 | AT4G15690.1 | 43.810 | 105 | 49 | 3 | 42 | 141 | 3 | 102 | 4.74e-24 | 89.7 |
| Msa0234590 | AT5G18600.1 | 41.414 | 99 | 58 | 0 | 43 | 141 | 4 | 102 | 5.82e-23 | 87.0 |
| Msa0234590 | AT4G15680.1 | 39.000 | 100 | 61 | 0 | 42 | 141 | 3 | 102 | 6.22e-23 | 87.0 |
| Msa0234590 | AT4G15660.1 | 44.231 | 104 | 50 | 4 | 42 | 141 | 3 | 102 | 8.33e-23 | 86.7 |
| Msa0234590 | AT4G15670.1 | 38.000 | 100 | 62 | 0 | 42 | 141 | 3 | 102 | 1.99e-22 | 85.5 |
| Msa0234590 | AT3G21460.1 | 44.231 | 104 | 48 | 3 | 43 | 141 | 4 | 102 | 9.96e-21 | 81.3 |
| Msa0234590 | AT3G62950.1 | 35.644 | 101 | 64 | 1 | 42 | 141 | 3 | 103 | 3.02e-20 | 80.1 |
| Msa0234590 | AT5G11930.1 | 40.777 | 103 | 49 | 3 | 40 | 140 | 55 | 147 | 3.25e-20 | 81.3 |
| Msa0234590 | AT2G30540.1 | 40.860 | 93 | 55 | 0 | 42 | 134 | 3 | 95 | 6.78e-20 | 79.0 |
| Msa0234590 | AT1G06830.1 | 40.860 | 93 | 55 | 0 | 42 | 134 | 3 | 95 | 9.65e-20 | 78.6 |
| Msa0234590 | AT1G03850.1 | 40.385 | 104 | 56 | 2 | 32 | 135 | 47 | 144 | 1.98e-19 | 79.7 |
| Msa0234590 | AT2G47880.1 | 39.785 | 93 | 56 | 0 | 42 | 134 | 3 | 95 | 5.53e-19 | 76.6 |
| Msa0234590 | AT2G47870.1 | 35.238 | 105 | 59 | 2 | 42 | 141 | 3 | 103 | 1.67e-18 | 75.5 |
| Msa0234590 | AT3G62960.1 | 38.710 | 93 | 57 | 0 | 42 | 134 | 3 | 95 | 2.65e-17 | 72.4 |
| Msa0234590 | AT1G03020.1 | 29.000 | 100 | 71 | 0 | 42 | 141 | 3 | 102 | 3.04e-15 | 67.0 |
| Msa0234590 | AT3G62930.1 | 30.000 | 100 | 70 | 0 | 42 | 141 | 3 | 102 | 3.21e-15 | 67.0 |
| Msa0234590 | AT5G63030.1 | 37.895 | 95 | 57 | 2 | 46 | 139 | 25 | 118 | 3.60e-12 | 59.7 |
Find 45 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCGAAACCGTTCAGTTTC+CGG | 0.216471 | 2_2:-7326173 | Msa0234590:CDS |
| AGGATTCCTGTGGTGATTAT+TGG | 0.279834 | 2_2:+7326373 | None:intergenic |
| GAAAACGCAGTTATTATCAT+TGG | 0.318460 | 2_2:-7326322 | Msa0234590:CDS |
| CGGAGGTGTTGGTGGATAGT+TGG | 0.347866 | 2_2:+7326191 | None:intergenic |
| TGGGAAGTTGCTTGGTGGGT+TGG | 0.357470 | 2_2:-7326137 | Msa0234590:CDS |
| TACTCATATCTCAGGTGAAT+TGG | 0.360053 | 2_2:-7326101 | Msa0234590:CDS |
| GTGGAGACACTTGTTCTATA+TGG | 0.366500 | 2_2:+7326412 | None:intergenic |
| CGCCGGAAACTGAACGGTTT+CGG | 0.371997 | 2_2:+7326171 | None:intergenic |
| TTCGTTGGTGGGAAGTTGCT+TGG | 0.411854 | 2_2:-7326145 | Msa0234590:CDS |
| GGGCAGCAACGGCAGTTTCA+TGG | 0.413065 | 2_2:+7326212 | None:intergenic |
| CAGTTTCCGGCGGTGTTCGT+TGG | 0.424655 | 2_2:-7326160 | Msa0234590:CDS |
| TTGTTGTTACGTTGGATTCA+AGG | 0.430107 | 2_2:+7326353 | None:intergenic |
| TTTCCGGCGGTGTTCGTTGG+TGG | 0.452461 | 2_2:-7326157 | Msa0234590:CDS |
| TTGGTGGGAAGTTGCTTGGT+GGG | 0.461042 | 2_2:-7326141 | Msa0234590:CDS |
| GGAGGTGTTGGTGGATAGTT+GGG | 0.462970 | 2_2:+7326192 | None:intergenic |
| GTTATGGCTACTCATATCTC+AGG | 0.469774 | 2_2:-7326109 | Msa0234590:CDS |
| TTCCGGCGGTGTTCGTTGGT+GGG | 0.487798 | 2_2:-7326156 | Msa0234590:CDS |
| TGGTGGGTTGGAAAGAGTTA+TGG | 0.489715 | 2_2:-7326125 | Msa0234590:CDS |
| AACGGTTTCGGAGGTGTTGG+TGG | 0.499025 | 2_2:+7326183 | None:intergenic |
| GTTCCTATATTAAAAGATGC+TGG | 0.501499 | 2_2:-7326079 | Msa0234590:CDS |
| AAAAGATTGTTACAAGGTCT+AGG | 0.503022 | 2_2:-7326268 | Msa0234590:CDS |
| GTTGGTGGGAAGTTGCTTGG+TGG | 0.513182 | 2_2:-7326142 | Msa0234590:CDS |
| CTGAACGGTTTCGGAGGTGT+TGG | 0.524370 | 2_2:+7326180 | None:intergenic |
| TCTTGATCAACCTCGTAGAC+AGG | 0.528624 | 2_2:+7326235 | None:intergenic |
| TTGTTCTATATGGAATTGCT+TGG | 0.539257 | 2_2:+7326422 | None:intergenic |
| GGTGGATAGTTGGGCAGCAA+CGG | 0.555191 | 2_2:+7326201 | None:intergenic |
| TTCCCACCAACGAACACCGC+CGG | 0.567247 | 2_2:+7326154 | None:intergenic |
| TGAAACCATTGTTGTTACGT+TGG | 0.567408 | 2_2:+7326345 | None:intergenic |
| GATCAGATATAGTTGATGAG+AGG | 0.595501 | 2_2:-7327286 | Msa0234590:intron |
| TTCCTGTGGTGATTATTGGT+AGG | 0.597769 | 2_2:+7326377 | None:intergenic |
| AACCTACCAATAATCACCAC+AGG | 0.599000 | 2_2:-7326379 | Msa0234590:CDS |
| GTTGTCAAAAGATTGTTACA+AGG | 0.611660 | 2_2:-7326274 | Msa0234590:CDS |
| TGAATCCAACGTAACAACAA+TGG | 0.615946 | 2_2:-7326350 | Msa0234590:CDS |
| GTTGGATTCAAGGATTCCTG+TGG | 0.633385 | 2_2:+7326363 | None:intergenic |
| TGATCAACCTCGTAGACAGG+AGG | 0.639092 | 2_2:+7326238 | None:intergenic |
| GAACACCGCCGGAAACTGAA+CGG | 0.641793 | 2_2:+7326165 | None:intergenic |
| AATTGCTTGGTACATGATGA+TGG | 0.642381 | 2_2:+7326435 | None:intergenic |
| CGGAAACTGAACGGTTTCGG+AGG | 0.643135 | 2_2:+7326174 | None:intergenic |
| CGAAACCGTTCAGTTTCCGG+CGG | 0.644599 | 2_2:-7326170 | Msa0234590:CDS |
| GATCAACCTCGTAGACAGGA+GGG | 0.651727 | 2_2:+7326239 | None:intergenic |
| CATAACTAGTCAAAGCCACA+AGG | 0.660326 | 2_2:+7326054 | None:intergenic |
| TAAAAGATGCTGGTGCCTTG+TGG | 0.660431 | 2_2:-7326069 | Msa0234590:CDS |
| TGGTAGGTTACGTGTGACTG+TGG | 0.662213 | 2_2:+7326393 | None:intergenic |
| GTTATTATCATTGGAACACG+AGG | 0.684410 | 2_2:-7326313 | Msa0234590:CDS |
| AGTCAACCCTCCTGTCTACG+AGG | 0.688227 | 2_2:-7326245 | Msa0234590:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGATATAAAATAAATTTAC+AGG | + | chr2_2:7326594-7326613 | None:intergenic | 10.0% |
| !! | ATGATATAAAATAAATTTAC+AGG | + | chr2_2:7326594-7326613 | None:intergenic | 10.0% |
| !! | ATTTAAATTTGAATTGTGAA+AGG | + | chr2_2:7326362-7326381 | None:intergenic | 15.0% |
| !! | TCACAATTCAAATTTAAATA+TGG | - | chr2_2:7326363-7326382 | Msa0234590:CDS | 15.0% |
| !!! | TATTTTATTTAGTTATGCAA+TGG | + | chr2_2:7326433-7326452 | None:intergenic | 15.0% |
| !! | TGTATACATATAAGATTATT+AGG | + | chr2_2:7326482-7326501 | None:intergenic | 15.0% |
| !! | ATTTAAATTTGAATTGTGAA+AGG | + | chr2_2:7326362-7326381 | None:intergenic | 15.0% |
| !! | TCACAATTCAAATTTAAATA+TGG | - | chr2_2:7326363-7326382 | Msa0234590:CDS | 15.0% |
| !!! | TATTTTATTTAGTTATGCAA+TGG | + | chr2_2:7326433-7326452 | None:intergenic | 15.0% |
| !! | TGTATACATATAAGATTATT+AGG | + | chr2_2:7326482-7326501 | None:intergenic | 15.0% |
| !! | GCATAACTAAATAAAATATC+AGG | - | chr2_2:7326435-7326454 | Msa0234590:CDS | 20.0% |
| !! | ATGGAAATATAAAAACAGAA+GGG | + | chr2_2:7326809-7326828 | None:intergenic | 20.0% |
| !! | GCATAACTAAATAAAATATC+AGG | - | chr2_2:7326435-7326454 | Msa0234590:CDS | 20.0% |
| !! | ATGGAAATATAAAAACAGAA+GGG | + | chr2_2:7326809-7326828 | None:intergenic | 20.0% |
| !!! | TTTTGGGTCTTGTATAATTA+AGG | - | chr2_2:7326237-7326256 | Msa0234590:CDS | 25.0% |
| !!! | TAATTAAGGATTTTGAGTCT+TGG | - | chr2_2:7326251-7326270 | Msa0234590:CDS | 25.0% |
| ! | AAAATATCAGGATAGATCAT+TGG | - | chr2_2:7326447-7326466 | Msa0234590:intron | 25.0% |
| ! | ATCTATCATCAATAAATGAG+AGG | - | chr2_2:7326612-7326631 | Msa0234590:intron | 25.0% |
| ! | TGGAAATATAAAAACAGAAG+GGG | + | chr2_2:7326808-7326827 | None:intergenic | 25.0% |
| ! | GATGGAAATATAAAAACAGA+AGG | + | chr2_2:7326810-7326829 | None:intergenic | 25.0% |
| !!! | TTTTGGGTCTTGTATAATTA+AGG | - | chr2_2:7326237-7326256 | Msa0234590:CDS | 25.0% |
| !!! | TAATTAAGGATTTTGAGTCT+TGG | - | chr2_2:7326251-7326270 | Msa0234590:CDS | 25.0% |
| ! | AAAATATCAGGATAGATCAT+TGG | - | chr2_2:7326447-7326466 | Msa0234590:intron | 25.0% |
| ! | ATCTATCATCAATAAATGAG+AGG | - | chr2_2:7326612-7326631 | Msa0234590:intron | 25.0% |
| ! | TGGAAATATAAAAACAGAAG+GGG | + | chr2_2:7326808-7326827 | None:intergenic | 25.0% |
| ! | GATGGAAATATAAAAACAGA+AGG | + | chr2_2:7326810-7326829 | None:intergenic | 25.0% |
| TAATAACCAATGCTAGAGAT+CGG | + | chr2_2:7326122-7326141 | None:intergenic | 30.0% | |
| TTAATGAGCTAAATGTGAAG+GGG | + | chr2_2:7326316-7326335 | None:intergenic | 30.0% | |
| GTTAATGAGCTAAATGTGAA+GGG | + | chr2_2:7326317-7326336 | None:intergenic | 30.0% | |
| TGTTAATGAGCTAAATGTGA+AGG | + | chr2_2:7326318-7326337 | None:intergenic | 30.0% | |
| ACATGTCAAGTACTATCATT+TGG | - | chr2_2:7326335-7326354 | Msa0234590:CDS | 30.0% | |
| ATTTAGTTATGCAATGGTCA+TGG | + | chr2_2:7326427-7326446 | None:intergenic | 30.0% | |
| ! | ATAAATGAGAGGATGCATTT+TGG | - | chr2_2:7326623-7326642 | Msa0234590:intron | 30.0% |
| TTGTTCTATATGGAATTGCT+TGG | + | chr2_2:7326937-7326956 | None:intergenic | 30.0% | |
| GAAAACGCAGTTATTATCAT+TGG | - | chr2_2:7327034-7327053 | Msa0234590:intron | 30.0% | |
| ! | GTAACAATCTTTTGACAACA+TGG | + | chr2_2:7327081-7327100 | None:intergenic | 30.0% |
| GTTGTCAAAAGATTGTTACA+AGG | - | chr2_2:7327082-7327101 | Msa0234590:intron | 30.0% | |
| AAAAGATTGTTACAAGGTCT+AGG | - | chr2_2:7327088-7327107 | Msa0234590:intron | 30.0% | |
| GTTCCTATATTAAAAGATGC+TGG | - | chr2_2:7327277-7327296 | Msa0234590:intron | 30.0% | |
| TAATAACCAATGCTAGAGAT+CGG | + | chr2_2:7326122-7326141 | None:intergenic | 30.0% | |
| TTAATGAGCTAAATGTGAAG+GGG | + | chr2_2:7326316-7326335 | None:intergenic | 30.0% | |
| GTTAATGAGCTAAATGTGAA+GGG | + | chr2_2:7326317-7326336 | None:intergenic | 30.0% | |
| TGTTAATGAGCTAAATGTGA+AGG | + | chr2_2:7326318-7326337 | None:intergenic | 30.0% | |
| ACATGTCAAGTACTATCATT+TGG | - | chr2_2:7326335-7326354 | Msa0234590:CDS | 30.0% | |
| ATTTAGTTATGCAATGGTCA+TGG | + | chr2_2:7326427-7326446 | None:intergenic | 30.0% | |
| ! | ATAAATGAGAGGATGCATTT+TGG | - | chr2_2:7326623-7326642 | Msa0234590:intron | 30.0% |
| TTGTTCTATATGGAATTGCT+TGG | + | chr2_2:7326937-7326956 | None:intergenic | 30.0% | |
| GAAAACGCAGTTATTATCAT+TGG | - | chr2_2:7327034-7327053 | Msa0234590:intron | 30.0% | |
| ! | GTAACAATCTTTTGACAACA+TGG | + | chr2_2:7327081-7327100 | None:intergenic | 30.0% |
| GTTGTCAAAAGATTGTTACA+AGG | - | chr2_2:7327082-7327101 | Msa0234590:intron | 30.0% | |
| AAAAGATTGTTACAAGGTCT+AGG | - | chr2_2:7327088-7327107 | Msa0234590:intron | 30.0% | |
| GTTCCTATATTAAAAGATGC+TGG | - | chr2_2:7327277-7327296 | Msa0234590:intron | 30.0% | |
| !! | GATCAGATATAGTTGATGAG+AGG | - | chr2_2:7326070-7326089 | Msa0234590:CDS | 35.0% |
| ! | TAGTTTGCGAATCTTCCATT+CGG | + | chr2_2:7326160-7326179 | None:intergenic | 35.0% |
| CGCTAAGAACCTAATATCTT+GGG | + | chr2_2:7326200-7326219 | None:intergenic | 35.0% | |
| CCAAGATATTAGGTTCTTAG+CGG | - | chr2_2:7326198-7326217 | Msa0234590:CDS | 35.0% | |
| CAAGATATTAGGTTCTTAGC+GGG | - | chr2_2:7326199-7326218 | Msa0234590:CDS | 35.0% | |
| TATGTAACATGAGGACATCT+TGG | - | chr2_2:7326667-7326686 | Msa0234590:intron | 35.0% | |
| !! | ACATCTTGGCTTTTCTAACA+TGG | - | chr2_2:7326681-7326700 | Msa0234590:intron | 35.0% |
| !! | CATCTTGGCTTTTCTAACAT+GGG | - | chr2_2:7326682-7326701 | Msa0234590:intron | 35.0% |
| ! | CATGTTGCGTCATAGAATTT+TGG | + | chr2_2:7326726-7326745 | None:intergenic | 35.0% |
| AATTGCTTGGTACATGATGA+TGG | + | chr2_2:7326924-7326943 | None:intergenic | 35.0% | |
| ! | TTGTTGTTACGTTGGATTCA+AGG | + | chr2_2:7327006-7327025 | None:intergenic | 35.0% |
| TGAATCCAACGTAACAACAA+TGG | - | chr2_2:7327006-7327025 | Msa0234590:intron | 35.0% | |
| ! | TGAAACCATTGTTGTTACGT+TGG | + | chr2_2:7327014-7327033 | None:intergenic | 35.0% |
| GTTATTATCATTGGAACACG+AGG | - | chr2_2:7327043-7327062 | Msa0234590:intron | 35.0% | |
| TACTCATATCTCAGGTGAAT+TGG | - | chr2_2:7327255-7327274 | Msa0234590:intron | 35.0% | |
| ! | GCACCAGCATCTTTTAATAT+AGG | + | chr2_2:7327283-7327302 | None:intergenic | 35.0% |
| !! | GATCAGATATAGTTGATGAG+AGG | - | chr2_2:7326070-7326089 | Msa0234590:CDS | 35.0% |
| ! | TAGTTTGCGAATCTTCCATT+CGG | + | chr2_2:7326160-7326179 | None:intergenic | 35.0% |
| CGCTAAGAACCTAATATCTT+GGG | + | chr2_2:7326200-7326219 | None:intergenic | 35.0% | |
| CCAAGATATTAGGTTCTTAG+CGG | - | chr2_2:7326198-7326217 | Msa0234590:CDS | 35.0% | |
| CAAGATATTAGGTTCTTAGC+GGG | - | chr2_2:7326199-7326218 | Msa0234590:CDS | 35.0% | |
| TATGTAACATGAGGACATCT+TGG | - | chr2_2:7326667-7326686 | Msa0234590:intron | 35.0% | |
| !! | ACATCTTGGCTTTTCTAACA+TGG | - | chr2_2:7326681-7326700 | Msa0234590:intron | 35.0% |
| !! | CATCTTGGCTTTTCTAACAT+GGG | - | chr2_2:7326682-7326701 | Msa0234590:intron | 35.0% |
| ! | CATGTTGCGTCATAGAATTT+TGG | + | chr2_2:7326726-7326745 | None:intergenic | 35.0% |
| AATTGCTTGGTACATGATGA+TGG | + | chr2_2:7326924-7326943 | None:intergenic | 35.0% | |
| ! | TTGTTGTTACGTTGGATTCA+AGG | + | chr2_2:7327006-7327025 | None:intergenic | 35.0% |
| TGAATCCAACGTAACAACAA+TGG | - | chr2_2:7327006-7327025 | Msa0234590:intron | 35.0% | |
| ! | TGAAACCATTGTTGTTACGT+TGG | + | chr2_2:7327014-7327033 | None:intergenic | 35.0% |
| GTTATTATCATTGGAACACG+AGG | - | chr2_2:7327043-7327062 | Msa0234590:intron | 35.0% | |
| TACTCATATCTCAGGTGAAT+TGG | - | chr2_2:7327255-7327274 | Msa0234590:intron | 35.0% | |
| ! | GCACCAGCATCTTTTAATAT+AGG | + | chr2_2:7327283-7327302 | None:intergenic | 35.0% |
| ATGGAAGATTCGCAAACTAG+AGG | - | chr2_2:7326161-7326180 | Msa0234590:CDS | 40.0% | |
| AAGATTCGCAAACTAGAGGT+TGG | - | chr2_2:7326165-7326184 | Msa0234590:CDS | 40.0% | |
| AGATTCGCAAACTAGAGGTT+GGG | - | chr2_2:7326166-7326185 | Msa0234590:CDS | 40.0% | |
| CCGCTAAGAACCTAATATCT+TGG | + | chr2_2:7326201-7326220 | None:intergenic | 40.0% | |
| ! | GTTCGTACCTATGTGCTTTT+GGG | - | chr2_2:7326221-7326240 | Msa0234590:CDS | 40.0% |
| ! | TACAAGACCCAAAAGCACAT+AGG | + | chr2_2:7326231-7326250 | None:intergenic | 40.0% |
| AACACTGCGTATGTAACATG+AGG | - | chr2_2:7326658-7326677 | Msa0234590:intron | 40.0% | |
| GCAGTTATGTCTTACGTCAT+CGG | + | chr2_2:7326765-7326784 | None:intergenic | 40.0% | |
| GAAAATGGAGAGAGGAATGA+TGG | + | chr2_2:7326828-7326847 | None:intergenic | 40.0% | |
| GTGGAGACACTTGTTCTATA+TGG | + | chr2_2:7326947-7326966 | None:intergenic | 40.0% | |
| AACCTACCAATAATCACCAC+AGG | - | chr2_2:7326977-7326996 | Msa0234590:intron | 40.0% | |
| TTCCTGTGGTGATTATTGGT+AGG | + | chr2_2:7326982-7327001 | None:intergenic | 40.0% | |
| AGGATTCCTGTGGTGATTAT+TGG | + | chr2_2:7326986-7327005 | None:intergenic | 40.0% | |
| GTTATGGCTACTCATATCTC+AGG | - | chr2_2:7327247-7327266 | Msa0234590:intron | 40.0% | |
| ATGGAAGATTCGCAAACTAG+AGG | - | chr2_2:7326161-7326180 | Msa0234590:CDS | 40.0% | |
| AAGATTCGCAAACTAGAGGT+TGG | - | chr2_2:7326165-7326184 | Msa0234590:CDS | 40.0% | |
| AGATTCGCAAACTAGAGGTT+GGG | - | chr2_2:7326166-7326185 | Msa0234590:CDS | 40.0% | |
| CCGCTAAGAACCTAATATCT+TGG | + | chr2_2:7326201-7326220 | None:intergenic | 40.0% | |
| ! | GTTCGTACCTATGTGCTTTT+GGG | - | chr2_2:7326221-7326240 | Msa0234590:CDS | 40.0% |
| ! | TACAAGACCCAAAAGCACAT+AGG | + | chr2_2:7326231-7326250 | None:intergenic | 40.0% |
| AACACTGCGTATGTAACATG+AGG | - | chr2_2:7326658-7326677 | Msa0234590:intron | 40.0% | |
| GCAGTTATGTCTTACGTCAT+CGG | + | chr2_2:7326765-7326784 | None:intergenic | 40.0% | |
| GAAAATGGAGAGAGGAATGA+TGG | + | chr2_2:7326828-7326847 | None:intergenic | 40.0% | |
| GTGGAGACACTTGTTCTATA+TGG | + | chr2_2:7326947-7326966 | None:intergenic | 40.0% | |
| AACCTACCAATAATCACCAC+AGG | - | chr2_2:7326977-7326996 | Msa0234590:intron | 40.0% | |
| TTCCTGTGGTGATTATTGGT+AGG | + | chr2_2:7326982-7327001 | None:intergenic | 40.0% | |
| AGGATTCCTGTGGTGATTAT+TGG | + | chr2_2:7326986-7327005 | None:intergenic | 40.0% | |
| GTTATGGCTACTCATATCTC+AGG | - | chr2_2:7327247-7327266 | Msa0234590:intron | 40.0% | |
| TGATGAGAGGTTGTTGCAGA+CGG | - | chr2_2:7326083-7326102 | Msa0234590:CDS | 45.0% | |
| ATGCTAGAGATCGGCATTGT+TGG | + | chr2_2:7326113-7326132 | None:intergenic | 45.0% | |
| ACAATGCCGATCTCTAGCAT+TGG | - | chr2_2:7326113-7326132 | Msa0234590:CDS | 45.0% | |
| GTCGTTGAGATGTTACCGAA+TGG | - | chr2_2:7326142-7326161 | Msa0234590:CDS | 45.0% | |
| ! | GGTTCGTACCTATGTGCTTT+TGG | - | chr2_2:7326220-7326239 | Msa0234590:CDS | 45.0% |
| ! | CTTACGTCATCGGTTACTGT+GGG | + | chr2_2:7326755-7326774 | None:intergenic | 45.0% |
| ! | TCTTACGTCATCGGTTACTG+TGG | + | chr2_2:7326756-7326775 | None:intergenic | 45.0% |
| GAGAATTGGTGAGAAGGAGA+GGG | + | chr2_2:7326853-7326872 | None:intergenic | 45.0% | |
| AGAGAATTGGTGAGAAGGAG+AGG | + | chr2_2:7326854-7326873 | None:intergenic | 45.0% | |
| GAGAGAGAGAATTGGTGAGA+AGG | + | chr2_2:7326859-7326878 | None:intergenic | 45.0% | |
| GAGAGAGAGAGAGAGAGAAT+TGG | + | chr2_2:7326867-7326886 | None:intergenic | 45.0% | |
| GTTGGATTCAAGGATTCCTG+TGG | + | chr2_2:7326996-7327015 | None:intergenic | 45.0% | |
| TCTTGATCAACCTCGTAGAC+AGG | + | chr2_2:7327124-7327143 | None:intergenic | 45.0% | |
| !! | TGGTGGGTTGGAAAGAGTTA+TGG | - | chr2_2:7327231-7327250 | Msa0234590:intron | 45.0% |
| TAAAAGATGCTGGTGCCTTG+TGG | - | chr2_2:7327287-7327306 | Msa0234590:CDS | 45.0% | |
| TGATGAGAGGTTGTTGCAGA+CGG | - | chr2_2:7326083-7326102 | Msa0234590:CDS | 45.0% | |
| ATGCTAGAGATCGGCATTGT+TGG | + | chr2_2:7326113-7326132 | None:intergenic | 45.0% | |
| ACAATGCCGATCTCTAGCAT+TGG | - | chr2_2:7326113-7326132 | Msa0234590:CDS | 45.0% | |
| GTCGTTGAGATGTTACCGAA+TGG | - | chr2_2:7326142-7326161 | Msa0234590:CDS | 45.0% | |
| ! | GGTTCGTACCTATGTGCTTT+TGG | - | chr2_2:7326220-7326239 | Msa0234590:CDS | 45.0% |
| ! | CTTACGTCATCGGTTACTGT+GGG | + | chr2_2:7326755-7326774 | None:intergenic | 45.0% |
| ! | TCTTACGTCATCGGTTACTG+TGG | + | chr2_2:7326756-7326775 | None:intergenic | 45.0% |
| GAGAATTGGTGAGAAGGAGA+GGG | + | chr2_2:7326853-7326872 | None:intergenic | 45.0% | |
| AGAGAATTGGTGAGAAGGAG+AGG | + | chr2_2:7326854-7326873 | None:intergenic | 45.0% | |
| GAGAGAGAGAATTGGTGAGA+AGG | + | chr2_2:7326859-7326878 | None:intergenic | 45.0% | |
| GAGAGAGAGAGAGAGAGAAT+TGG | + | chr2_2:7326867-7326886 | None:intergenic | 45.0% | |
| GTTGGATTCAAGGATTCCTG+TGG | + | chr2_2:7326996-7327015 | None:intergenic | 45.0% | |
| TCTTGATCAACCTCGTAGAC+AGG | + | chr2_2:7327124-7327143 | None:intergenic | 45.0% | |
| !! | TGGTGGGTTGGAAAGAGTTA+TGG | - | chr2_2:7327231-7327250 | Msa0234590:intron | 45.0% |
| TAAAAGATGCTGGTGCCTTG+TGG | - | chr2_2:7327287-7327306 | Msa0234590:CDS | 45.0% | |
| TTCGCAAACTAGAGGTTGGG+AGG | - | chr2_2:7326169-7326188 | Msa0234590:CDS | 50.0% | |
| TCGCAAACTAGAGGTTGGGA+GGG | - | chr2_2:7326170-7326189 | Msa0234590:CDS | 50.0% | |
| GAGGGAGGACCCAAGATATT+AGG | - | chr2_2:7326188-7326207 | Msa0234590:CDS | 50.0% | |
| GGAGACGACTCTAACGTCAA+CGG | + | chr2_2:7326787-7326806 | None:intergenic | 50.0% | |
| AGAGGGAGGAAAATGGAGAG+AGG | + | chr2_2:7326836-7326855 | None:intergenic | 50.0% | |
| GAGAAGGAGAGGGAGGAAAA+TGG | + | chr2_2:7326843-7326862 | None:intergenic | 50.0% | |
| AATTGGTGAGAAGGAGAGGG+AGG | + | chr2_2:7326850-7326869 | None:intergenic | 50.0% | |
| TGGTAGGTTACGTGTGACTG+TGG | + | chr2_2:7326966-7326985 | None:intergenic | 50.0% | |
| GATCAACCTCGTAGACAGGA+GGG | + | chr2_2:7327120-7327139 | None:intergenic | 50.0% | |
| TGATCAACCTCGTAGACAGG+AGG | + | chr2_2:7327121-7327140 | None:intergenic | 50.0% | |
| !! | GGAGGTGTTGGTGGATAGTT+GGG | + | chr2_2:7327167-7327186 | None:intergenic | 50.0% |
| CTCCGAAACCGTTCAGTTTC+CGG | - | chr2_2:7327183-7327202 | Msa0234590:intron | 50.0% | |
| ! | TTCGTTGGTGGGAAGTTGCT+TGG | - | chr2_2:7327211-7327230 | Msa0234590:intron | 50.0% |
| TTGGTGGGAAGTTGCTTGGT+GGG | - | chr2_2:7327215-7327234 | Msa0234590:intron | 50.0% | |
| TTCGCAAACTAGAGGTTGGG+AGG | - | chr2_2:7326169-7326188 | Msa0234590:CDS | 50.0% | |
| TCGCAAACTAGAGGTTGGGA+GGG | - | chr2_2:7326170-7326189 | Msa0234590:CDS | 50.0% | |
| GAGGGAGGACCCAAGATATT+AGG | - | chr2_2:7326188-7326207 | Msa0234590:CDS | 50.0% | |
| GGAGACGACTCTAACGTCAA+CGG | + | chr2_2:7326787-7326806 | None:intergenic | 50.0% | |
| AGAGGGAGGAAAATGGAGAG+AGG | + | chr2_2:7326836-7326855 | None:intergenic | 50.0% | |
| GAGAAGGAGAGGGAGGAAAA+TGG | + | chr2_2:7326843-7326862 | None:intergenic | 50.0% | |
| AATTGGTGAGAAGGAGAGGG+AGG | + | chr2_2:7326850-7326869 | None:intergenic | 50.0% | |
| TGGTAGGTTACGTGTGACTG+TGG | + | chr2_2:7326966-7326985 | None:intergenic | 50.0% | |
| GATCAACCTCGTAGACAGGA+GGG | + | chr2_2:7327120-7327139 | None:intergenic | 50.0% | |
| TGATCAACCTCGTAGACAGG+AGG | + | chr2_2:7327121-7327140 | None:intergenic | 50.0% | |
| !! | GGAGGTGTTGGTGGATAGTT+GGG | + | chr2_2:7327167-7327186 | None:intergenic | 50.0% |
| CTCCGAAACCGTTCAGTTTC+CGG | - | chr2_2:7327183-7327202 | Msa0234590:intron | 50.0% | |
| ! | TTCGTTGGTGGGAAGTTGCT+TGG | - | chr2_2:7327211-7327230 | Msa0234590:intron | 50.0% |
| TTGGTGGGAAGTTGCTTGGT+GGG | - | chr2_2:7327215-7327234 | Msa0234590:intron | 50.0% | |
| CAAACTAGAGGTTGGGAGGG+AGG | - | chr2_2:7326173-7326192 | Msa0234590:CDS | 55.0% | |
| AGTCAACCCTCCTGTCTACG+AGG | - | chr2_2:7327111-7327130 | Msa0234590:intron | 55.0% | |
| GGTGGATAGTTGGGCAGCAA+CGG | + | chr2_2:7327158-7327177 | None:intergenic | 55.0% | |
| !! | CGGAGGTGTTGGTGGATAGT+TGG | + | chr2_2:7327168-7327187 | None:intergenic | 55.0% |
| !! | AACGGTTTCGGAGGTGTTGG+TGG | + | chr2_2:7327176-7327195 | None:intergenic | 55.0% |
| ! | CTGAACGGTTTCGGAGGTGT+TGG | + | chr2_2:7327179-7327198 | None:intergenic | 55.0% |
| CGGAAACTGAACGGTTTCGG+AGG | + | chr2_2:7327185-7327204 | None:intergenic | 55.0% | |
| CGCCGGAAACTGAACGGTTT+CGG | + | chr2_2:7327188-7327207 | None:intergenic | 55.0% | |
| CGAAACCGTTCAGTTTCCGG+CGG | - | chr2_2:7327186-7327205 | Msa0234590:intron | 55.0% | |
| GAACACCGCCGGAAACTGAA+CGG | + | chr2_2:7327194-7327213 | None:intergenic | 55.0% | |
| ! | GTTGGTGGGAAGTTGCTTGG+TGG | - | chr2_2:7327214-7327233 | Msa0234590:intron | 55.0% |
| ! | TGGGAAGTTGCTTGGTGGGT+TGG | - | chr2_2:7327219-7327238 | Msa0234590:intron | 55.0% |
| CAAACTAGAGGTTGGGAGGG+AGG | - | chr2_2:7326173-7326192 | Msa0234590:CDS | 55.0% | |
| AGTCAACCCTCCTGTCTACG+AGG | - | chr2_2:7327111-7327130 | Msa0234590:intron | 55.0% | |
| GGTGGATAGTTGGGCAGCAA+CGG | + | chr2_2:7327158-7327177 | None:intergenic | 55.0% | |
| !! | CGGAGGTGTTGGTGGATAGT+TGG | + | chr2_2:7327168-7327187 | None:intergenic | 55.0% |
| !! | AACGGTTTCGGAGGTGTTGG+TGG | + | chr2_2:7327176-7327195 | None:intergenic | 55.0% |
| ! | CTGAACGGTTTCGGAGGTGT+TGG | + | chr2_2:7327179-7327198 | None:intergenic | 55.0% |
| CGGAAACTGAACGGTTTCGG+AGG | + | chr2_2:7327185-7327204 | None:intergenic | 55.0% | |
| CGCCGGAAACTGAACGGTTT+CGG | + | chr2_2:7327188-7327207 | None:intergenic | 55.0% | |
| CGAAACCGTTCAGTTTCCGG+CGG | - | chr2_2:7327186-7327205 | Msa0234590:intron | 55.0% | |
| GAACACCGCCGGAAACTGAA+CGG | + | chr2_2:7327194-7327213 | None:intergenic | 55.0% | |
| ! | GTTGGTGGGAAGTTGCTTGG+TGG | - | chr2_2:7327214-7327233 | Msa0234590:intron | 55.0% |
| ! | TGGGAAGTTGCTTGGTGGGT+TGG | - | chr2_2:7327219-7327238 | Msa0234590:intron | 55.0% |
| GGGCAGCAACGGCAGTTTCA+TGG | + | chr2_2:7327147-7327166 | None:intergenic | 60.0% | |
| CAGTTTCCGGCGGTGTTCGT+TGG | - | chr2_2:7327196-7327215 | Msa0234590:intron | 60.0% | |
| TTTCCGGCGGTGTTCGTTGG+TGG | - | chr2_2:7327199-7327218 | Msa0234590:intron | 60.0% | |
| TTCCGGCGGTGTTCGTTGGT+GGG | - | chr2_2:7327200-7327219 | Msa0234590:intron | 60.0% | |
| TTCCCACCAACGAACACCGC+CGG | + | chr2_2:7327205-7327224 | None:intergenic | 60.0% | |
| GGGCAGCAACGGCAGTTTCA+TGG | + | chr2_2:7327147-7327166 | None:intergenic | 60.0% | |
| CAGTTTCCGGCGGTGTTCGT+TGG | - | chr2_2:7327196-7327215 | Msa0234590:intron | 60.0% | |
| TTTCCGGCGGTGTTCGTTGG+TGG | - | chr2_2:7327199-7327218 | Msa0234590:intron | 60.0% | |
| TTCCGGCGGTGTTCGTTGGT+GGG | - | chr2_2:7327200-7327219 | Msa0234590:intron | 60.0% | |
| TTCCCACCAACGAACACCGC+CGG | + | chr2_2:7327205-7327224 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 7326063 | 7327315 | 7326063 | ID=Msa0234590;Name=Msa0234590 |
| chr2_2 | mRNA | 7326063 | 7327315 | 7326063 | ID=Msa0234590-mRNA-1;Parent=Msa0234590;Name=Msa0234590-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|0.5|1|1|2|0|141 |
| chr2_2 | exon | 7327287 | 7327315 | 7327287 | ID=Msa0234590-mRNA-1:exon:3145;Parent=Msa0234590-mRNA-1 |
| chr2_2 | exon | 7326063 | 7326459 | 7326063 | ID=Msa0234590-mRNA-1:exon:3144;Parent=Msa0234590-mRNA-1 |
| chr2_2 | CDS | 7327287 | 7327315 | 7327287 | ID=Msa0234590-mRNA-1:cds;Parent=Msa0234590-mRNA-1 |
| chr2_2 | CDS | 7326063 | 7326459 | 7326063 | ID=Msa0234590-mRNA-1:cds;Parent=Msa0234590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
