Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0193860 | XP_013462597.1 | 91.447 | 608 | 52 | 0 | 1 | 608 | 1 | 608 | 0.0 | 1071 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0193860 | A0A072V461 | 91.447 | 608 | 52 | 0 | 1 | 608 | 1 | 608 | 0.0 | 1071 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0193860 | Msa0235720 | 0.918683 | 1.150968e-86 | -8.615850e-47 |
| Msa0193860 | Msa0314180 | 0.879999 | 7.874407e-70 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0193860 | MtrunA17_Chr2g0284221 | 91.447 | 608 | 52 | 0 | 1 | 608 | 1 | 608 | 0.0 | 1071 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 120 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATCCGTTCTCTAATAATT+TGG | 0.097174 | 2_1:-9718695 | Msa0193860:CDS |
| CTATTCATATCTGGATAATT+AGG | 0.167640 | 2_1:-9716459 | Msa0193860:three_prime_UTR |
| ACATATTATCAACTAATTAT+TGG | 0.184086 | 2_1:-9716688 | Msa0193860:three_prime_UTR |
| ACCAACTTCATTGCCGTTCT+TGG | 0.193830 | 2_1:+9717522 | None:intergenic |
| TTATCTTGATAGATCATTAA+AGG | 0.205521 | 2_1:-9717828 | Msa0193860:CDS |
| CTGAAGCAGAACGTTGTTAT+AGG | 0.249987 | 2_1:-9717319 | Msa0193860:CDS |
| CCACAGTTCTTTCCTGGTAT+TGG | 0.271242 | 2_1:-9718529 | Msa0193860:CDS |
| GAATCAAGCAAAGAACTAAA+AGG | 0.274738 | 2_1:+9720701 | None:intergenic |
| GTTGATCTTCTATTCATATC+TGG | 0.283271 | 2_1:-9716468 | Msa0193860:three_prime_UTR |
| TAAAACTTATCATTGGCTTA+TGG | 0.286687 | 2_1:-9717291 | Msa0193860:CDS |
| ACATCTTCAACAATTGTAAA+AGG | 0.290927 | 2_1:-9720868 | Msa0193860:five_prime_UTR |
| TTGAAGTTGATGTGCTTAAT+TGG | 0.306162 | 2_1:-9720535 | Msa0193860:CDS |
| TCAGATTATTGATTATTTGC+AGG | 0.331084 | 2_1:+9717927 | None:intergenic |
| AATCCGTTCTCTAATAATTT+GGG | 0.332628 | 2_1:-9718694 | Msa0193860:CDS |
| TATCTGCAAAATGGTAATAC+TGG | 0.337162 | 2_1:-9717616 | Msa0193860:CDS |
| CGAGCTCCACAGTTCTTTCC+TGG | 0.337750 | 2_1:-9718535 | Msa0193860:CDS |
| TCAGAATTGGAAGAGGGTTT+TGG | 0.340517 | 2_1:+9720737 | None:intergenic |
| AGATAGAGCTGGTTTGGATT+TGG | 0.341628 | 2_1:+9717634 | None:intergenic |
| GTCATCATGATTGTCAGAAT+TGG | 0.349089 | 2_1:+9720724 | None:intergenic |
| ATTACCTTAACGTCAGGTTT+TGG | 0.356212 | 2_1:+9718046 | None:intergenic |
| AACCAGCTCTATCTGCAAAA+TGG | 0.360107 | 2_1:-9717625 | Msa0193860:CDS |
| GGATCCACAGAGATGCTTCT+TGG | 0.363335 | 2_1:+9718322 | None:intergenic |
| ACCCAGAGGAATTGTTGTTT+TGG | 0.364863 | 2_1:-9717358 | Msa0193860:CDS |
| TCCTGGTATTGGATATGTTA+AGG | 0.376374 | 2_1:-9718518 | Msa0193860:CDS |
| GTTGGAGAACGACCCTTTGC+AGG | 0.376951 | 2_1:+9718154 | None:intergenic |
| AACAACAAATTAGTAGTTAC+AGG | 0.378198 | 2_1:+9718466 | None:intergenic |
| GGAAATTTAAAACTTATCAT+TGG | 0.389447 | 2_1:-9717298 | Msa0193860:CDS |
| GCTATAGTTTCTAATGTGAT+TGG | 0.393230 | 2_1:-9717589 | Msa0193860:CDS |
| TTCCAAAACAACAATTCCTC+TGG | 0.407386 | 2_1:+9717356 | None:intergenic |
| CAACAATTGTAAAAGGAAAC+AGG | 0.416911 | 2_1:-9720861 | Msa0193860:five_prime_UTR |
| CTGATGTGGATTCTCCTTGT+TGG | 0.416929 | 2_1:-9718660 | Msa0193860:CDS |
| GTAACTACTAATTTGTTGTT+GGG | 0.420493 | 2_1:-9718463 | Msa0193860:CDS |
| GATGTTGATGACTTTGTAAA+GGG | 0.423416 | 2_1:-9718220 | Msa0193860:CDS |
| TGTAACTACTAATTTGTTGT+TGG | 0.428051 | 2_1:-9718464 | Msa0193860:CDS |
| TCTTGTAGCTTCAGGTCATT+CGG | 0.429260 | 2_1:-9717421 | Msa0193860:intron |
| GACATTCAAGGGGCTCGAAA+TGG | 0.429304 | 2_1:-9717680 | Msa0193860:intron |
| CGCTAGTAGGTCAGCGAATG+AGG | 0.432078 | 2_1:-9718182 | Msa0193860:CDS |
| CAACATCAACGGAATAGAAA+TGG | 0.444445 | 2_1:-9718365 | Msa0193860:CDS |
| CAGGTCATTCGGAGAAGTCT+AGG | 0.444572 | 2_1:-9717410 | Msa0193860:CDS |
| ATTCATGAATCCTATGGATC+TGG | 0.444654 | 2_1:-9716636 | Msa0193860:three_prime_UTR |
| ACAAACTAGTTTCAGTTCAA+AGG | 0.446234 | 2_1:-9720672 | Msa0193860:CDS |
| CTGAAAATCCCAGCGCTAGT+AGG | 0.447730 | 2_1:-9718195 | Msa0193860:CDS |
| TGAGTCTAGCTCCTTTCTTA+AGG | 0.447790 | 2_1:-9718782 | Msa0193860:CDS |
| TACTAATTTGTTGTTGGGAG+AGG | 0.458062 | 2_1:-9718458 | Msa0193860:CDS |
| ATCTCCAAAACCTGACGTTA+AGG | 0.461121 | 2_1:-9718050 | Msa0193860:CDS |
| TCCTTGTTGGAAGGGAACAC+CGG | 0.463719 | 2_1:-9718647 | Msa0193860:CDS |
| GAAGAAGAAAATTAGTTAAG+TGG | 0.473997 | 2_1:+9716576 | None:intergenic |
| GTATTGACTTGGAAGATGTT+TGG | 0.476389 | 2_1:-9720926 | Msa0193860:five_prime_UTR |
| GAAGAGCGATTGAGAGTGAA+GGG | 0.476653 | 2_1:+9720764 | None:intergenic |
| ATTCGCTGACCTACTAGCGC+TGG | 0.479453 | 2_1:+9718186 | None:intergenic |
| TTTGCATCTAGCAGTGGAGG+TGG | 0.480201 | 2_1:-9717547 | Msa0193860:CDS |
| AACAACACCTGTACAATTGT+GGG | 0.481405 | 2_1:-9718850 | Msa0193860:CDS |
| CCAACCATTACCTTAACGTC+AGG | 0.484558 | 2_1:+9718040 | None:intergenic |
| GATGATGATGTCGGTGATGT+TGG | 0.491166 | 2_1:+9718136 | None:intergenic |
| GATGTGAGCATGTTTCAAAA+AGG | 0.492155 | 2_1:-9720482 | Msa0193860:intron |
| GGCTCTAAGTTTAATTCCAT+CGG | 0.493635 | 2_1:-9718626 | Msa0193860:CDS |
| GAACGGCAATGAAGTTGGTC+AGG | 0.493848 | 2_1:-9717518 | Msa0193860:intron |
| AATCAAGCAAAGAACTAAAA+GGG | 0.493888 | 2_1:+9720702 | None:intergenic |
| CGATGTTGATGACTTTGTAA+AGG | 0.495336 | 2_1:-9718221 | Msa0193860:CDS |
| AGGAAGACAACATTCTACTA+TGG | 0.497073 | 2_1:-9716601 | Msa0193860:three_prime_UTR |
| AAAACCTGACGTTAAGGTAA+TGG | 0.497832 | 2_1:-9718044 | Msa0193860:CDS |
| CTTTCTTAAGGCACAAAACA+AGG | 0.498676 | 2_1:-9718770 | Msa0193860:CDS |
| CAAACTAGTTTCAGTTCAAA+GGG | 0.503600 | 2_1:-9720671 | Msa0193860:CDS |
| TGGAGATTCAATTAAAGACT+TGG | 0.504370 | 2_1:+9718066 | None:intergenic |
| AAACAACACCTGTACAATTG+TGG | 0.510308 | 2_1:-9718851 | Msa0193860:CDS |
| TATCATTGGCTTATGGAAGC+TGG | 0.511955 | 2_1:-9717284 | Msa0193860:CDS |
| TATTCAGTGAAGAAACTTCA+AGG | 0.513917 | 2_1:-9720948 | Msa0193860:intron |
| ACCAAGAACGGCAATGAAGT+TGG | 0.514005 | 2_1:-9717523 | Msa0193860:CDS |
| ATTTCAACTTTGCCAGCTCA+AGG | 0.519701 | 2_1:-9720617 | Msa0193860:CDS |
| ATTGTGAACATGATCTTAGT+AGG | 0.520511 | 2_1:-9717958 | Msa0193860:CDS |
| GGTTTGGATTTGGAACAGTA+AGG | 0.524431 | 2_1:+9717644 | None:intergenic |
| TAACTGATTCATGAATCCTA+TGG | 0.531363 | 2_1:-9716642 | Msa0193860:three_prime_UTR |
| ATGCAAAAGTAGGCGGTGAA+AGG | 0.532881 | 2_1:-9717895 | Msa0193860:CDS |
| AGAAGAGCGATTGAGAGTGA+AGG | 0.533447 | 2_1:+9720763 | None:intergenic |
| AGTGGAGGTGGCACCAAGAA+CGG | 0.535431 | 2_1:-9717535 | Msa0193860:CDS |
| AAACTTTCATCACCTTGAGC+TGG | 0.539485 | 2_1:+9720605 | None:intergenic |
| TTCGCTGACCTACTAGCGCT+GGG | 0.542567 | 2_1:+9718187 | None:intergenic |
| AAGAAGAAAATTAGTTAAGT+GGG | 0.542898 | 2_1:+9716577 | None:intergenic |
| CATTTCTATTCCGTTGATGT+TGG | 0.543726 | 2_1:+9718366 | None:intergenic |
| GACATTCTATTGAATTCCGA+AGG | 0.548169 | 2_1:-9718823 | Msa0193860:CDS |
| TGATAACAGTCCAGATCCAT+AGG | 0.548372 | 2_1:+9716626 | None:intergenic |
| GTTTGGATTTGGAACAGTAA+GGG | 0.554673 | 2_1:+9717645 | None:intergenic |
| ATCTACAAACTACTAAGCAC+TGG | 0.555531 | 2_1:+9716723 | None:intergenic |
| TGTGGATTCTCCTTGTTGGA+AGG | 0.556271 | 2_1:-9718656 | Msa0193860:CDS |
| GAAACTTCAAGGTATTGACT+TGG | 0.557829 | 2_1:-9720937 | Msa0193860:five_prime_UTR |
| ATGATTGTCAGAATTGGAAG+AGG | 0.558804 | 2_1:+9720730 | None:intergenic |
| AGGTCATTCGGAGAAGTCTA+GGG | 0.562459 | 2_1:-9717409 | Msa0193860:CDS |
| ACAGATTGTGAAATTTCCGA+TGG | 0.569930 | 2_1:+9718610 | None:intergenic |
| GACATCATCATCTCAAGCTA+AGG | 0.572158 | 2_1:-9718125 | Msa0193860:CDS |
| GGTATTGGATATGTTAAGGA+CGG | 0.572974 | 2_1:-9718514 | Msa0193860:CDS |
| TCCAAAACAACAATTCCTCT+GGG | 0.577956 | 2_1:+9717357 | None:intergenic |
| TATTTGCAGGAGTTGAGTCA+AGG | 0.580540 | 2_1:+9717858 | None:intergenic |
| GATGGAATTAAACTTAGAGC+CGG | 0.581730 | 2_1:+9718628 | None:intergenic |
| TTGGCTTATGGAAGCTGGTG+TGG | 0.584648 | 2_1:-9717279 | Msa0193860:CDS |
| TTGGAGAACGACCCTTTGCA+GGG | 0.585408 | 2_1:+9718155 | None:intergenic |
| CCCTTTCTAAAAGTGTCTGA+TGG | 0.588863 | 2_1:-9718883 | Msa0193860:CDS |
| GTGGATTCTCCTTGTTGGAA+GGG | 0.590196 | 2_1:-9718655 | Msa0193860:CDS |
| CAGTATTCAACCAACATCAA+CGG | 0.591588 | 2_1:-9718376 | Msa0193860:CDS |
| TATCAGTTGATATCTTCAGT+GGG | 0.593193 | 2_1:+9718743 | None:intergenic |
| TCACCCAAATTATTAGAGAA+CGG | 0.595772 | 2_1:+9718691 | None:intergenic |
| GGATTCAACACATCAACGGC+AGG | 0.596335 | 2_1:+9718904 | None:intergenic |
| TGATTGTCAGAATTGGAAGA+GGG | 0.598938 | 2_1:+9720731 | None:intergenic |
| CATACTCATGAAAACTGTCA+TGG | 0.606687 | 2_1:-9718434 | Msa0193860:CDS |
| CCTGACGTTAAGGTAATGGT+TGG | 0.609803 | 2_1:-9718040 | Msa0193860:CDS |
| GGAAAGAACTGTGGAGCTCG+AGG | 0.619071 | 2_1:+9718538 | None:intergenic |
| GCCGGTGTTCCCTTCCAACA+AGG | 0.621250 | 2_1:+9718646 | None:intergenic |
| GGATCTGGACTGTTATCAAG+AGG | 0.622838 | 2_1:-9716621 | Msa0193860:three_prime_UTR |
| TCCTTAACATATCCAATACC+AGG | 0.627311 | 2_1:+9718517 | None:intergenic |
| TAGATCATTAAAGGTTACCA+AGG | 0.638742 | 2_1:-9717819 | Msa0193860:intron |
| GGGTGATAGTGACACTGATG+TGG | 0.639954 | 2_1:-9718674 | Msa0193860:CDS |
| ATATCAGTTGATATCTTCAG+TGG | 0.649663 | 2_1:+9718742 | None:intergenic |
| ATAGAATGTGAATTTAGCAG+AGG | 0.659245 | 2_1:+9718301 | None:intergenic |
| TGAATCAACTCCGTCCACAC+AGG | 0.663059 | 2_1:+9717982 | None:intergenic |
| AAAGGGATTCAACACATCAA+CGG | 0.665270 | 2_1:+9718900 | None:intergenic |
| CCAATACCAGGAAAGAACTG+TGG | 0.670251 | 2_1:+9718529 | None:intergenic |
| TCTAATGTGATTGGTCAGAG+TGG | 0.670664 | 2_1:-9717580 | Msa0193860:CDS |
| TGATCCAAGAAGCATCTCTG+TGG | 0.683600 | 2_1:-9718326 | Msa0193860:CDS |
| TGACAAACAAATGCACCCAG+AGG | 0.683639 | 2_1:-9717372 | Msa0193860:CDS |
| ATCAGTTGATATCTTCAGTG+GGG | 0.704864 | 2_1:+9718744 | None:intergenic |
| TTAGCTTGAGATGATGATGT+CGG | 0.724297 | 2_1:+9718127 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAGAAGTTTATATATTTTTT+TGG | - | chr2_1:9717109-9717128 | Msa0193860:intron | 15.0% |
| !!! | TTTTCATAAAAAAACTTATC+TGG | - | chr2_1:9717205-9717224 | Msa0193860:intron | 15.0% |
| !! | TTATCTGCAAATATAAAATT+TGG | - | chr2_1:9717942-9717961 | Msa0193860:CDS | 15.0% |
| !!! | AAATAAAATGACTCTTTTAT+TGG | - | chr2_1:9718095-9718114 | Msa0193860:CDS | 15.0% |
| !! | TTAAAAATAGTTTCAAGAAT+AGG | + | chr2_1:9718123-9718142 | None:intergenic | 15.0% |
| !! | ACATATTATCAACTAATTAT+TGG | - | chr2_1:9720726-9720745 | Msa0193860:CDS | 15.0% |
| !!! | TCATATCTTTGTTTTTTGTT+TGG | + | chr2_1:9716592-9716611 | None:intergenic | 20.0% |
| !!! | TTTAAAAAATGTCTAAAGCA+AGG | + | chr2_1:9717024-9717043 | None:intergenic | 20.0% |
| !!! | TTGCTTTAGACATTTTTTAA+AGG | - | chr2_1:9717023-9717042 | Msa0193860:intron | 20.0% |
| !!! | TGCTTTAGACATTTTTTAAA+GGG | - | chr2_1:9717024-9717043 | Msa0193860:intron | 20.0% |
| !!! | CTAATTTTAGATTGAAACAT+AGG | + | chr2_1:9717090-9717109 | None:intergenic | 20.0% |
| !! | TATTATATATCATCATAAGC+TGG | - | chr2_1:9717676-9717695 | Msa0193860:intron | 20.0% |
| !!! | AATATTGATATTTGAAGTGA+TGG | - | chr2_1:9718208-9718227 | Msa0193860:CDS | 20.0% |
| !! | TTTAACTAAAAAAACACTAG+TGG | + | chr2_1:9718375-9718394 | None:intergenic | 20.0% |
| !!! | AAAGTATTATGTTTTTCTGT+TGG | + | chr2_1:9718852-9718871 | None:intergenic | 20.0% |
| !!! | ATCTCTAGTAGATTTTAATA+TGG | - | chr2_1:9719007-9719026 | Msa0193860:intron | 20.0% |
| !!! | TCTCTAGTAGATTTTAATAT+GGG | - | chr2_1:9719008-9719027 | Msa0193860:intron | 20.0% |
| !! | AAAGAAAAACTTGTAACTAT+AGG | - | chr2_1:9719170-9719189 | Msa0193860:intron | 20.0% |
| !!! | AATGATTTTAATGCAAAAGT+AGG | - | chr2_1:9719509-9719528 | Msa0193860:intron | 20.0% |
| !! | TTATCTTGATAGATCATTAA+AGG | - | chr2_1:9719586-9719605 | Msa0193860:intron | 20.0% |
| !!! | AATTGTTGTTTTGGAATTTA+TGG | - | chr2_1:9720065-9720084 | Msa0193860:intron | 20.0% |
| !!! | GGAAATTTAAAACTTATCAT+TGG | - | chr2_1:9720116-9720135 | Msa0193860:intron | 20.0% |
| !! | AAGAAGAAAATTAGTTAAGT+GGG | + | chr2_1:9720840-9720859 | None:intergenic | 20.0% |
| !!! | TGTTTTGATGAAAGGAAAAT+TGG | + | chr2_1:9716529-9716548 | None:intergenic | 25.0% |
| ! | ACATCTTCAACAATTGTAAA+AGG | - | chr2_1:9716546-9716565 | Msa0193860:three_prime_UTR | 25.0% |
| ! | AATCAAGCAAAGAACTAAAA+GGG | + | chr2_1:9716715-9716734 | None:intergenic | 25.0% |
| !! | TTTTATGCAATTCCAGAAAA+GGG | + | chr2_1:9716850-9716869 | None:intergenic | 25.0% |
| !! | TTTTTATGCAATTCCAGAAA+AGG | + | chr2_1:9716851-9716870 | None:intergenic | 25.0% |
| !!! | TTTCTGGAATTGCATAAAAA+TGG | - | chr2_1:9716851-9716870 | Msa0193860:intron | 25.0% |
| !!! | GTTTTGTAAGTTTGAGTTTA+GGG | + | chr2_1:9717431-9717450 | None:intergenic | 25.0% |
| !!! | AGTTTTGTAAGTTTGAGTTT+AGG | + | chr2_1:9717432-9717451 | None:intergenic | 25.0% |
| ! | TAAACTCAAACTTACAAAAC+TGG | - | chr2_1:9717431-9717450 | Msa0193860:intron | 25.0% |
| ! | ATGCTCTACAGAAATTATTT+AGG | - | chr2_1:9717881-9717900 | Msa0193860:CDS | 25.0% |
| !! | TAGTTGACTTTGATTTCTAA+AGG | + | chr2_1:9717915-9717934 | None:intergenic | 25.0% |
| ! | TCTGCAAATATAAAATTTGG+AGG | - | chr2_1:9717945-9717964 | Msa0193860:CDS | 25.0% |
| !!! | GAGTCATTTTATTTCTATCT+TGG | + | chr2_1:9718089-9718108 | None:intergenic | 25.0% |
| ! | AAATCCGTTCTCTAATAATT+TGG | - | chr2_1:9718719-9718738 | Msa0193860:CDS | 25.0% |
| ! | AATCCGTTCTCTAATAATTT+GGG | - | chr2_1:9718720-9718739 | Msa0193860:CDS | 25.0% |
| ! | AACAACAAATTAGTAGTTAC+AGG | + | chr2_1:9718951-9718970 | None:intergenic | 25.0% |
| !!! | TGTAACTACTAATTTGTTGT+TGG | - | chr2_1:9718950-9718969 | Msa0193860:intron | 25.0% |
| !!! | GTAACTACTAATTTGTTGTT+GGG | - | chr2_1:9718951-9718970 | Msa0193860:intron | 25.0% |
| !! | GATCTTCTAAAAAGATTTGA+AGG | - | chr2_1:9719320-9719339 | Msa0193860:intron | 25.0% |
| !! | TCAGATTATTGATTATTTGC+AGG | + | chr2_1:9719490-9719509 | None:intergenic | 25.0% |
| ! | AGATAAAAAGAACTATTTGC+AGG | + | chr2_1:9719572-9719591 | None:intergenic | 25.0% |
| ! | AATATAGATCATACATACCT+TGG | + | chr2_1:9719615-9719634 | None:intergenic | 25.0% |
| ! | AAAACAAACAGATTTGATTC+TGG | + | chr2_1:9719947-9719966 | None:intergenic | 25.0% |
| !!! | TAAAACTTATCATTGGCTTA+TGG | - | chr2_1:9720123-9720142 | Msa0193860:intron | 25.0% |
| ! | TGTAAATTGCAAAAATGTTG+CGG | - | chr2_1:9720159-9720178 | Msa0193860:intron | 25.0% |
| !!! | CTACTTGCTATAGTATTTTT+AGG | + | chr2_1:9720197-9720216 | None:intergenic | 25.0% |
| !! | ATTATTTCCATAAGCTCTTT+TGG | - | chr2_1:9720349-9720368 | Msa0193860:intron | 25.0% |
| ! | TATATTACGCATACTAACAT+GGG | - | chr2_1:9720616-9720635 | Msa0193860:CDS | 25.0% |
| !!! | GATTGTGTATTTCTATTTTC+AGG | - | chr2_1:9720648-9720667 | Msa0193860:CDS | 25.0% |
| ! | GAAGAAGAAAATTAGTTAAG+TGG | + | chr2_1:9720841-9720860 | None:intergenic | 25.0% |
| !! | CTTAACTAATTTTCTTCTTC+TGG | - | chr2_1:9720841-9720860 | Msa0193860:five_prime_UTR | 25.0% |
| ! | CTATTCATATCTGGATAATT+AGG | - | chr2_1:9720955-9720974 | Msa0193860:intron | 25.0% |
| TATTCAGTGAAGAAACTTCA+AGG | - | chr2_1:9716466-9716485 | Msa0193860:three_prime_UTR | 30.0% | |
| !!! | GTTGAAGATGTTTTGATGAA+AGG | + | chr2_1:9716537-9716556 | None:intergenic | 30.0% |
| CAACAATTGTAAAAGGAAAC+AGG | - | chr2_1:9716553-9716572 | Msa0193860:three_prime_UTR | 30.0% | |
| GAATCAAGCAAAGAACTAAA+AGG | + | chr2_1:9716716-9716735 | None:intergenic | 30.0% | |
| ! | ACAAACTAGTTTCAGTTCAA+AGG | - | chr2_1:9716742-9716761 | Msa0193860:exon | 30.0% |
| ! | CAAACTAGTTTCAGTTCAAA+GGG | - | chr2_1:9716743-9716762 | Msa0193860:exon | 30.0% |
| !! | TTGAAGTTGATGTGCTTAAT+TGG | - | chr2_1:9716879-9716898 | Msa0193860:intron | 30.0% |
| AGCTATTCTTTCATTGTTAG+AGG | + | chr2_1:9717169-9717188 | None:intergenic | 30.0% | |
| CATAAAATATGCAAGGTTTG+GGG | + | chr2_1:9717290-9717309 | None:intergenic | 30.0% | |
| GCATAAAATATGCAAGGTTT+GGG | + | chr2_1:9717291-9717310 | None:intergenic | 30.0% | |
| TGCATAAAATATGCAAGGTT+TGG | + | chr2_1:9717292-9717311 | None:intergenic | 30.0% | |
| GACAATGCATAAAATATGCA+AGG | + | chr2_1:9717297-9717316 | None:intergenic | 30.0% | |
| CTAATACCATCTTAGAATTC+AGG | - | chr2_1:9717401-9717420 | Msa0193860:CDS | 30.0% | |
| TGTGACAATGTGTTTATAAG+TGG | + | chr2_1:9717477-9717496 | None:intergenic | 30.0% | |
| TCTTAGTTTCCCTATTACAT+TGG | - | chr2_1:9717729-9717748 | Msa0193860:intron | 30.0% | |
| AGTGAGATTCCAATGTAATA+GGG | + | chr2_1:9717741-9717760 | None:intergenic | 30.0% | |
| TAGTGAGATTCCAATGTAAT+AGG | + | chr2_1:9717742-9717761 | None:intergenic | 30.0% | |
| ! | GCATGAATTTTATTGCTGAA+AGG | + | chr2_1:9717795-9717814 | None:intergenic | 30.0% |
| CTAAGAGTGAAGAATTACAA+AGG | - | chr2_1:9717846-9717865 | Msa0193860:CDS | 30.0% | |
| TCAACTAACCAATTTGAAGA+TGG | + | chr2_1:9718018-9718037 | None:intergenic | 30.0% | |
| !!! | TGATGGAAATGTTTTAGCTA+CGG | - | chr2_1:9718225-9718244 | Msa0193860:CDS | 30.0% |
| GACAAATAAATGAGAAACTG+TGG | - | chr2_1:9718468-9718487 | Msa0193860:CDS | 30.0% | |
| ! | TATCAGTTGATATCTTCAGT+GGG | + | chr2_1:9718674-9718693 | None:intergenic | 30.0% |
| ! | ATATCAGTTGATATCTTCAG+TGG | + | chr2_1:9718675-9718694 | None:intergenic | 30.0% |
| !! | TTATTAGAGAACGGATTTTG+AGG | + | chr2_1:9718717-9718736 | None:intergenic | 30.0% |
| TCACCCAAATTATTAGAGAA+CGG | + | chr2_1:9718726-9718745 | None:intergenic | 30.0% | |
| ATAGAATGTGAATTTAGCAG+AGG | + | chr2_1:9719116-9719135 | None:intergenic | 30.0% | |
| !! | GATGTTGATGACTTTGTAAA+GGG | - | chr2_1:9719194-9719213 | Msa0193860:intron | 30.0% |
| TGGAGATTCAATTAAAGACT+TGG | + | chr2_1:9719351-9719370 | None:intergenic | 30.0% | |
| ATTGTGAACATGATCTTAGT+AGG | - | chr2_1:9719456-9719475 | Msa0193860:intron | 30.0% | |
| !! | GATTTTAATGCAAAAGTAGG+CGG | - | chr2_1:9719512-9719531 | Msa0193860:intron | 30.0% |
| TAGATCATTAAAGGTTACCA+AGG | - | chr2_1:9719595-9719614 | Msa0193860:intron | 30.0% | |
| GAGCAGAGAATGAAATAAAA+GGG | + | chr2_1:9719676-9719695 | None:intergenic | 30.0% | |
| TGAGCAGAGAATGAAATAAA+AGG | + | chr2_1:9719677-9719696 | None:intergenic | 30.0% | |
| TATCTGCAAAATGGTAATAC+TGG | - | chr2_1:9719798-9719817 | Msa0193860:intron | 30.0% | |
| GCTATAGTTTCTAATGTGAT+TGG | - | chr2_1:9719825-9719844 | Msa0193860:intron | 30.0% | |
| TATGGAAACAACTTATGACA+TGG | - | chr2_1:9720309-9720328 | Msa0193860:intron | 30.0% | |
| AAGTTATCCAAAAGAGCTTA+TGG | + | chr2_1:9720359-9720378 | None:intergenic | 30.0% | |
| TTAAGCTGTATATCCAAACA+AGG | - | chr2_1:9720495-9720514 | Msa0193860:CDS | 30.0% | |
| TATATCCAAACAAGGTCTAT+AGG | - | chr2_1:9720503-9720522 | Msa0193860:CDS | 30.0% | |
| CTATATTACGCATACTAACA+TGG | - | chr2_1:9720615-9720634 | Msa0193860:CDS | 30.0% | |
| !! | ATTTCTATTTTCAGGAGTTG+TGG | - | chr2_1:9720656-9720675 | Msa0193860:CDS | 30.0% |
| ! | TAACTGATTCATGAATCCTA+TGG | - | chr2_1:9720772-9720791 | Msa0193860:CDS | 30.0% |
| GTTGATCTTCTATTCATATC+TGG | - | chr2_1:9720946-9720965 | Msa0193860:intron | 30.0% | |
| !! | GAAACTTCAAGGTATTGACT+TGG | - | chr2_1:9716477-9716496 | Msa0193860:three_prime_UTR | 35.0% |
| !! | GTATTGACTTGGAAGATGTT+TGG | - | chr2_1:9716488-9716507 | Msa0193860:three_prime_UTR | 35.0% |
| TGATTGTCAGAATTGGAAGA+GGG | + | chr2_1:9716686-9716705 | None:intergenic | 35.0% | |
| ATGATTGTCAGAATTGGAAG+AGG | + | chr2_1:9716687-9716706 | None:intergenic | 35.0% | |
| GTCATCATGATTGTCAGAAT+TGG | + | chr2_1:9716693-9716712 | None:intergenic | 35.0% | |
| !! | TTTTGAAGAACACCCTTTTC+TGG | - | chr2_1:9716835-9716854 | Msa0193860:intron | 35.0% |
| GATGTGAGCATGTTTCAAAA+AGG | - | chr2_1:9716932-9716951 | Msa0193860:intron | 35.0% | |
| CATTGTTAGAGGAACGATTA+AGG | + | chr2_1:9717158-9717177 | None:intergenic | 35.0% | |
| ! | AACTTATCTGGAGCATAACT+TGG | - | chr2_1:9717217-9717236 | Msa0193860:intron | 35.0% |
| !!! | AGCGGAAACCTTTTTTTTTG+TGG | - | chr2_1:9717249-9717268 | Msa0193860:intron | 35.0% |
| !!! | GGAAACCTTTTTTTTTGTGG+TGG | - | chr2_1:9717252-9717271 | Msa0193860:intron | 35.0% |
| !!! | CTTTTTTTTTGTGGTGGCTA+GGG | - | chr2_1:9717258-9717277 | Msa0193860:CDS | 35.0% |
| GAGCTTATCCAAGATCTATT+GGG | + | chr2_1:9717382-9717401 | None:intergenic | 35.0% | |
| AGAGCTTATCCAAGATCTAT+TGG | + | chr2_1:9717383-9717402 | None:intergenic | 35.0% | |
| !! | TACTTTTAAGAGTCCCATGT+TGG | + | chr2_1:9717511-9717530 | None:intergenic | 35.0% |
| GTAATTCTTCACTCTTAGAG+AGG | + | chr2_1:9717844-9717863 | None:intergenic | 35.0% | |
| CACTGTATACAGTGGTAAAT+TGG | - | chr2_1:9718165-9718184 | Msa0193860:CDS | 35.0% | |
| TCAGTTATGCTTCTGAGTTA+GGG | - | chr2_1:9718319-9718338 | Msa0193860:CDS | 35.0% | |
| ATCAAAATCTTGCGCCAATT+TGG | - | chr2_1:9718343-9718362 | Msa0193860:CDS | 35.0% | |
| AAAGGGATTCAACACATCAA+CGG | + | chr2_1:9718517-9718536 | None:intergenic | 35.0% | |
| !! | CCATCAGACACTTTTAGAAA+GGG | + | chr2_1:9718534-9718553 | None:intergenic | 35.0% |
| AAACAACACCTGTACAATTG+TGG | - | chr2_1:9718563-9718582 | Msa0193860:CDS | 35.0% | |
| AACAACACCTGTACAATTGT+GGG | - | chr2_1:9718564-9718583 | Msa0193860:CDS | 35.0% | |
| GACATTCTATTGAATTCCGA+AGG | - | chr2_1:9718591-9718610 | Msa0193860:CDS | 35.0% | |
| !!! | CTTGTTTTGTGCCTTAAGAA+AGG | + | chr2_1:9718646-9718665 | None:intergenic | 35.0% |
| CTTTCTTAAGGCACAAAACA+AGG | - | chr2_1:9718644-9718663 | Msa0193860:CDS | 35.0% | |
| ! | ATCAGTTGATATCTTCAGTG+GGG | + | chr2_1:9718673-9718692 | None:intergenic | 35.0% |
| GATGGAATTAAACTTAGAGC+CGG | + | chr2_1:9718789-9718808 | None:intergenic | 35.0% | |
| !! | GGCTCTAAGTTTAATTCCAT+CGG | - | chr2_1:9718788-9718807 | Msa0193860:CDS | 35.0% |
| ACAGATTGTGAAATTTCCGA+TGG | + | chr2_1:9718807-9718826 | None:intergenic | 35.0% | |
| ! | TCCTGGTATTGGATATGTTA+AGG | - | chr2_1:9718896-9718915 | Msa0193860:CDS | 35.0% |
| TCCTTAACATATCCAATACC+AGG | + | chr2_1:9718900-9718919 | None:intergenic | 35.0% | |
| ! | GGTATTGGATATGTTAAGGA+CGG | - | chr2_1:9718900-9718919 | Msa0193860:CDS | 35.0% |
| !! | TACTAATTTGTTGTTGGGAG+AGG | - | chr2_1:9718956-9718975 | Msa0193860:intron | 35.0% |
| CATACTCATGAAAACTGTCA+TGG | - | chr2_1:9718980-9718999 | Msa0193860:intron | 35.0% | |
| CAGTATTCAACCAACATCAA+CGG | - | chr2_1:9719038-9719057 | Msa0193860:intron | 35.0% | |
| CATTTCTATTCCGTTGATGT+TGG | + | chr2_1:9719051-9719070 | None:intergenic | 35.0% | |
| CAACATCAACGGAATAGAAA+TGG | - | chr2_1:9719049-9719068 | Msa0193860:intron | 35.0% | |
| !! | CGATGTTGATGACTTTGTAA+AGG | - | chr2_1:9719193-9719212 | Msa0193860:intron | 35.0% |
| ! | TTAGCTTGAGATGATGATGT+CGG | + | chr2_1:9719290-9719309 | None:intergenic | 35.0% |
| ! | ATTACCTTAACGTCAGGTTT+TGG | + | chr2_1:9719371-9719390 | None:intergenic | 35.0% |
| AAAACCTGACGTTAAGGTAA+TGG | - | chr2_1:9719370-9719389 | Msa0193860:intron | 35.0% | |
| !! | TGAAATAAAAGGGCACTGTT+AGG | + | chr2_1:9719666-9719685 | None:intergenic | 35.0% |
| TGCATATATGTCGACATTCA+AGG | - | chr2_1:9719722-9719741 | Msa0193860:intron | 35.0% | |
| GCATATATGTCGACATTCAA+GGG | - | chr2_1:9719723-9719742 | Msa0193860:intron | 35.0% | |
| CATATATGTCGACATTCAAG+GGG | - | chr2_1:9719724-9719743 | Msa0193860:intron | 35.0% | |
| ! | GTTTGGATTTGGAACAGTAA+GGG | + | chr2_1:9719772-9719791 | None:intergenic | 35.0% |
| TCCAAAACAACAATTCCTCT+GGG | + | chr2_1:9720060-9720079 | None:intergenic | 35.0% | |
| TTCCAAAACAACAATTCCTC+TGG | + | chr2_1:9720061-9720080 | None:intergenic | 35.0% | |
| AAGCTTACATTTCCTTCTCT+AGG | - | chr2_1:9720218-9720237 | Msa0193860:intron | 35.0% | |
| TCACAAGTGCTTATGTAAGT+AGG | + | chr2_1:9720272-9720291 | None:intergenic | 35.0% | |
| TATCACCTATAGACCTTGTT+TGG | + | chr2_1:9720511-9720530 | None:intergenic | 35.0% | |
| ATACTAACATGGGTGATGAA+TGG | - | chr2_1:9720626-9720645 | Msa0193860:CDS | 35.0% | |
| ATCTACAAACTACTAAGCAC+TGG | + | chr2_1:9720694-9720713 | None:intergenic | 35.0% | |
| ATTCATGAATCCTATGGATC+TGG | - | chr2_1:9720778-9720797 | Msa0193860:CDS | 35.0% | |
| AGGAAGACAACATTCTACTA+TGG | - | chr2_1:9720813-9720832 | Msa0193860:exon | 35.0% | |
| ! | TCAGAATTGGAAGAGGGTTT+TGG | + | chr2_1:9716680-9716699 | None:intergenic | 40.0% |
| ATTTCAACTTTGCCAGCTCA+AGG | - | chr2_1:9716797-9716816 | Msa0193860:intron | 40.0% | |
| AAACTTTCATCACCTTGAGC+TGG | + | chr2_1:9716812-9716831 | None:intergenic | 40.0% | |
| ! | ATAACTTGGTGAGCTGATAG+CGG | - | chr2_1:9717231-9717250 | Msa0193860:intron | 40.0% |
| CCTAGCCACCACAAAAAAAA+AGG | + | chr2_1:9717260-9717279 | None:intergenic | 40.0% | |
| !!! | CCTTTTTTTTTGTGGTGGCT+AGG | - | chr2_1:9717257-9717276 | Msa0193860:CDS | 40.0% |
| ACTATCAGGTTTCCGATATC+AGG | + | chr2_1:9717348-9717367 | None:intergenic | 40.0% | |
| GATATCGGAAACCTGATAGT+AGG | - | chr2_1:9717348-9717367 | Msa0193860:CDS | 40.0% | |
| TGTAGTGTCCCAATAGATCT+TGG | - | chr2_1:9717371-9717390 | Msa0193860:CDS | 40.0% | |
| ! | GGACAACCTGAATTCTAAGA+TGG | + | chr2_1:9717410-9717429 | None:intergenic | 40.0% |
| ! | ACTTACAAAACTGGCCTGTA+AGG | - | chr2_1:9717440-9717459 | Msa0193860:intron | 40.0% |
| TGAAAGGTTTCTACACGTCA+TGG | + | chr2_1:9717779-9717798 | None:intergenic | 40.0% | |
| ATTTGGAGGTCTAGAGAAGT+TGG | - | chr2_1:9717959-9717978 | Msa0193860:CDS | 40.0% | |
| GCTTCTCTCCATCTTCAAAT+TGG | - | chr2_1:9718007-9718026 | Msa0193860:CDS | 40.0% | |
| CTACGGCTAAATCATTGTCT+TGG | - | chr2_1:9718242-9718261 | Msa0193860:CDS | 40.0% | |
| CTCAGTTATGCTTCTGAGTT+AGG | - | chr2_1:9718318-9718337 | Msa0193860:CDS | 40.0% | |
| ACTAGTGGTCAATGCCAAAT+TGG | + | chr2_1:9718360-9718379 | None:intergenic | 40.0% | |
| !! | CCCTTTCTAAAAGTGTCTGA+TGG | - | chr2_1:9718531-9718550 | Msa0193860:CDS | 40.0% |
| !! | GCCATCAGACACTTTTAGAA+AGG | + | chr2_1:9718535-9718554 | None:intergenic | 40.0% |
| ! | GTCTTTTCCCACAATTGTAC+AGG | + | chr2_1:9718574-9718593 | None:intergenic | 40.0% |
| ! | AACAGCATGTTTTGTGCCTT+CGG | + | chr2_1:9718610-9718629 | None:intergenic | 40.0% |
| ! | TGAGTCTAGCTCCTTTCTTA+AGG | - | chr2_1:9718632-9718651 | Msa0193860:CDS | 40.0% |
| ! | AATGAGGTTTTCCCTGCAAA+GGG | - | chr2_1:9719248-9719267 | Msa0193860:intron | 40.0% |
| GACATCATCATCTCAAGCTA+AGG | - | chr2_1:9719289-9719308 | Msa0193860:intron | 40.0% | |
| ATCTCCAAAACCTGACGTTA+AGG | - | chr2_1:9719364-9719383 | Msa0193860:intron | 40.0% | |
| ATTGCTTGCAAAAACCTGTG+TGG | - | chr2_1:9719418-9719437 | Msa0193860:intron | 40.0% | |
| TATTTGCAGGAGTTGAGTCA+AGG | + | chr2_1:9719559-9719578 | None:intergenic | 40.0% | |
| ! | GGTTTGGATTTGGAACAGTA+AGG | + | chr2_1:9719773-9719792 | None:intergenic | 40.0% |
| !! | AGATAGAGCTGGTTTGGATT+TGG | + | chr2_1:9719783-9719802 | None:intergenic | 40.0% |
| ! | TTTTGCAGATAGAGCTGGTT+TGG | + | chr2_1:9719789-9719808 | None:intergenic | 40.0% |
| AACCAGCTCTATCTGCAAAA+TGG | - | chr2_1:9719789-9719808 | Msa0193860:intron | 40.0% | |
| ! | TACCATTTTGCAGATAGAGC+TGG | + | chr2_1:9719794-9719813 | None:intergenic | 40.0% |
| ! | TCTAATGTGATTGGTCAGAG+TGG | - | chr2_1:9719834-9719853 | Msa0193860:intron | 40.0% |
| ! | AGTTCTTTTGCATCTAGCAG+TGG | - | chr2_1:9719861-9719880 | Msa0193860:intron | 40.0% |
| TTCCGAATTCTTGTAGCTTC+AGG | - | chr2_1:9719985-9720004 | Msa0193860:intron | 40.0% | |
| GACCTGAAGCTACAAGAATT+CGG | + | chr2_1:9719990-9720009 | None:intergenic | 40.0% | |
| TCTTGTAGCTTCAGGTCATT+CGG | - | chr2_1:9719993-9720012 | Msa0193860:intron | 40.0% | |
| !!! | ACCCAGAGGAATTGTTGTTT+TGG | - | chr2_1:9720056-9720075 | Msa0193860:intron | 40.0% |
| CTGAAGCAGAACGTTGTTAT+AGG | - | chr2_1:9720095-9720114 | Msa0193860:intron | 40.0% | |
| !! | TATCATTGGCTTATGGAAGC+TGG | - | chr2_1:9720130-9720149 | Msa0193860:intron | 40.0% |
| !! | TTTCCTTCTCTAGGACTGTT+TGG | - | chr2_1:9720227-9720246 | Msa0193860:intron | 40.0% |
| ACTTGTGAGACTGTTTGACA+GGG | - | chr2_1:9720284-9720303 | Msa0193860:intron | 40.0% | |
| AGACTGTTTGACAGGGATTA+TGG | - | chr2_1:9720291-9720310 | Msa0193860:intron | 40.0% | |
| !! | TCTATTTTCAGGAGTTGTGG+AGG | - | chr2_1:9720659-9720678 | Msa0193860:CDS | 40.0% |
| TGATAACAGTCCAGATCCAT+AGG | + | chr2_1:9720791-9720810 | None:intergenic | 40.0% | |
| ! | AGAGTGAAGGGTTTTGCAAG+TGG | + | chr2_1:9716641-9716660 | None:intergenic | 45.0% |
| GAAGAGCGATTGAGAGTGAA+GGG | + | chr2_1:9716653-9716672 | None:intergenic | 45.0% | |
| AGAAGAGCGATTGAGAGTGA+AGG | + | chr2_1:9716654-9716673 | None:intergenic | 45.0% | |
| ! | TGAGCTTAGCTCAGTTGGTA+TGG | + | chr2_1:9717319-9717338 | None:intergenic | 45.0% |
| TGGTGTAGTCTTCACCTTAC+AGG | + | chr2_1:9717457-9717476 | None:intergenic | 45.0% | |
| ACACCACATCTCATCCAACA+TGG | - | chr2_1:9717494-9717513 | Msa0193860:intron | 45.0% | |
| CACCACATCTCATCCAACAT+GGG | - | chr2_1:9717495-9717514 | Msa0193860:intron | 45.0% | |
| TCGTGCAGAAGTAGAGGTAA+AGG | + | chr2_1:9717583-9717602 | None:intergenic | 45.0% | |
| AACGTATCGTGCAGAAGTAG+AGG | + | chr2_1:9717589-9717608 | None:intergenic | 45.0% | |
| ! | TGAAGATGGAGAGAAGCACA+GGG | + | chr2_1:9718004-9718023 | None:intergenic | 45.0% |
| ! | TTGAAGATGGAGAGAAGCAC+AGG | + | chr2_1:9718005-9718024 | None:intergenic | 45.0% |
| ACTGTATACAGTGACACGCA+TGG | + | chr2_1:9718158-9718177 | None:intergenic | 45.0% | |
| ! | ATGCGTGTCACTGTATACAG+TGG | - | chr2_1:9718157-9718176 | Msa0193860:CDS | 45.0% |
| CTGATGTGGATTCTCCTTGT+TGG | - | chr2_1:9718754-9718773 | Msa0193860:CDS | 45.0% | |
| TGTGGATTCTCCTTGTTGGA+AGG | - | chr2_1:9718758-9718777 | Msa0193860:CDS | 45.0% | |
| GTGGATTCTCCTTGTTGGAA+GGG | - | chr2_1:9718759-9718778 | Msa0193860:CDS | 45.0% | |
| CCAATACCAGGAAAGAACTG+TGG | + | chr2_1:9718888-9718907 | None:intergenic | 45.0% | |
| CCACAGTTCTTTCCTGGTAT+TGG | - | chr2_1:9718885-9718904 | Msa0193860:CDS | 45.0% | |
| !! | TGATCCAAGAAGCATCTCTG+TGG | - | chr2_1:9719088-9719107 | Msa0193860:intron | 45.0% |
| ! | GAATGAGGTTTTCCCTGCAA+AGG | - | chr2_1:9719247-9719266 | Msa0193860:intron | 45.0% |
| ! | GATGATGATGTCGGTGATGT+TGG | + | chr2_1:9719281-9719300 | None:intergenic | 45.0% |
| CCAACCATTACCTTAACGTC+AGG | + | chr2_1:9719377-9719396 | None:intergenic | 45.0% | |
| ! | CCTGACGTTAAGGTAATGGT+TGG | - | chr2_1:9719374-9719393 | Msa0193860:intron | 45.0% |
| CTTGCAAAAACCTGTGTGGA+CGG | - | chr2_1:9719422-9719441 | Msa0193860:intron | 45.0% | |
| ATGCAAAAGTAGGCGGTGAA+AGG | - | chr2_1:9719519-9719538 | Msa0193860:intron | 45.0% | |
| ! | TCTTTTGCATCTAGCAGTGG+AGG | - | chr2_1:9719864-9719883 | Msa0193860:intron | 45.0% |
| ACCAAGAACGGCAATGAAGT+TGG | - | chr2_1:9719891-9719910 | Msa0193860:intron | 45.0% | |
| ACCAACTTCATTGCCGTTCT+TGG | + | chr2_1:9719895-9719914 | None:intergenic | 45.0% | |
| ! | AAGTTGGTCAGGTACCCATA+TGG | - | chr2_1:9719907-9719926 | Msa0193860:intron | 45.0% |
| TTACTAGCACGCAGCCATAT+GGG | + | chr2_1:9719924-9719943 | None:intergenic | 45.0% | |
| AGGTCATTCGGAGAAGTCTA+GGG | - | chr2_1:9720005-9720024 | Msa0193860:intron | 45.0% | |
| TGACAAACAAATGCACCCAG+AGG | - | chr2_1:9720042-9720061 | Msa0193860:intron | 45.0% | |
| CATCCAAACAGTCCTAGAGA+AGG | + | chr2_1:9720233-9720252 | None:intergenic | 45.0% | |
| CACTTGTGAGACTGTTTGAC+AGG | - | chr2_1:9720283-9720302 | Msa0193860:intron | 45.0% | |
| GGATCTGGACTGTTATCAAG+AGG | - | chr2_1:9720793-9720812 | Msa0193860:CDS | 45.0% | |
| !!! | TATTCTAAATAAAATTTTAA+AGG | + | chr2_1:9718440-9718459 | None:intergenic | 5.0% |
| AGCTCACGAGGACCTGATAT+CGG | - | chr2_1:9717333-9717352 | Msa0193860:CDS | 50.0% | |
| GGGACACTACACCTACTATC+AGG | + | chr2_1:9717362-9717381 | None:intergenic | 50.0% | |
| GTCCCATGTTGGATGAGATG+TGG | + | chr2_1:9717500-9717519 | None:intergenic | 50.0% | |
| ! | GAAGATGGAGAGAAGCACAG+GGG | + | chr2_1:9718003-9718022 | None:intergenic | 50.0% |
| GGATTCAACACATCAACGGC+AGG | + | chr2_1:9718513-9718532 | None:intergenic | 50.0% | |
| ! | GGGTGATAGTGACACTGATG+TGG | - | chr2_1:9718740-9718759 | Msa0193860:CDS | 50.0% |
| TCCTTGTTGGAAGGGAACAC+CGG | - | chr2_1:9718767-9718786 | Msa0193860:CDS | 50.0% | |
| GGATCCACAGAGATGCTTCT+TGG | + | chr2_1:9719095-9719114 | None:intergenic | 50.0% | |
| CTGAAAATCCCAGCGCTAGT+AGG | - | chr2_1:9719219-9719238 | Msa0193860:intron | 50.0% | |
| TTGGAGAACGACCCTTTGCA+GGG | + | chr2_1:9719262-9719281 | None:intergenic | 50.0% | |
| TGAATCAACTCCGTCCACAC+AGG | + | chr2_1:9719435-9719454 | None:intergenic | 50.0% | |
| GGCTGCTGCTGTGCATAAAT+TGG | + | chr2_1:9719645-9719664 | None:intergenic | 50.0% | |
| GACATTCAAGGGGCTCGAAA+TGG | - | chr2_1:9719734-9719753 | Msa0193860:intron | 50.0% | |
| TTTGCATCTAGCAGTGGAGG+TGG | - | chr2_1:9719867-9719886 | Msa0193860:intron | 50.0% | |
| ! | GAACGGCAATGAAGTTGGTC+AGG | - | chr2_1:9719896-9719915 | Msa0193860:intron | 50.0% |
| GTTACTAGCACGCAGCCATA+TGG | + | chr2_1:9719925-9719944 | None:intergenic | 50.0% | |
| CAGGTCATTCGGAGAAGTCT+AGG | - | chr2_1:9720004-9720023 | Msa0193860:intron | 50.0% | |
| TTGGCTTATGGAAGCTGGTG+TGG | - | chr2_1:9720135-9720154 | Msa0193860:intron | 50.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | + | chr2_1:9717324-9717343 | None:intergenic | 55.0% | |
| CCAACTGAGCTAAGCTCACG+AGG | - | chr2_1:9717321-9717340 | Msa0193860:CDS | 55.0% | |
| ! | GAGAGAAGCACAGGGGCTTA+GGG | + | chr2_1:9717996-9718015 | None:intergenic | 55.0% |
| GGAAAGAACTGTGGAGCTCG+AGG | + | chr2_1:9718879-9718898 | None:intergenic | 55.0% | |
| CGAGCTCCACAGTTCTTTCC+TGG | - | chr2_1:9718879-9718898 | Msa0193860:CDS | 55.0% | |
| TTCGCTGACCTACTAGCGCT+GGG | + | chr2_1:9719230-9719249 | None:intergenic | 55.0% | |
| ATTCGCTGACCTACTAGCGC+TGG | + | chr2_1:9719231-9719250 | None:intergenic | 55.0% | |
| CGCTAGTAGGTCAGCGAATG+AGG | - | chr2_1:9719232-9719251 | Msa0193860:intron | 55.0% | |
| GTTGGAGAACGACCCTTTGC+AGG | + | chr2_1:9719263-9719282 | None:intergenic | 55.0% | |
| AGTGGAGGTGGCACCAAGAA+CGG | - | chr2_1:9719879-9719898 | Msa0193860:intron | 55.0% | |
| ! | GGAGAGAAGCACAGGGGCTT+AGG | + | chr2_1:9717997-9718016 | None:intergenic | 60.0% |
| GCCGGTGTTCCCTTCCAACA+AGG | + | chr2_1:9718771-9718790 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 9716436 | 9721000 | 9716436 | ID=Msa0193860;Name=Msa0193860 |
| chr2_1 | mRNA | 9716436 | 9721000 | 9716436 | ID=Msa0193860-mRNA-1;Parent=Msa0193860;Name=Msa0193860-mRNA-1;_AED=0.07;_eAED=0.07;_QI=149|1|1|1|0.8|0.66|6|316|608 |
| chr2_1 | exon | 9716436 | 9716766 | 9716436 | ID=Msa0193860-mRNA-1:exon:4456;Parent=Msa0193860-mRNA-1 |
| chr2_1 | exon | 9717256 | 9717435 | 9717256 | ID=Msa0193860-mRNA-1:exon:4455;Parent=Msa0193860-mRNA-1 |
| chr2_1 | exon | 9717519 | 9717692 | 9717519 | ID=Msa0193860-mRNA-1:exon:4454;Parent=Msa0193860-mRNA-1 |
| chr2_1 | exon | 9717820 | 9718931 | 9717820 | ID=Msa0193860-mRNA-1:exon:4453;Parent=Msa0193860-mRNA-1 |
| chr2_1 | exon | 9720483 | 9720963 | 9720483 | ID=Msa0193860-mRNA-1:exon:4452;Parent=Msa0193860-mRNA-1 |
| chr2_1 | exon | 9720987 | 9721000 | 9720987 | ID=Msa0193860-mRNA-1:exon:4451;Parent=Msa0193860-mRNA-1 |
| chr2_1 | five_prime_UTR | 9720987 | 9721000 | 9720987 | ID=Msa0193860-mRNA-1:five_prime_utr;Parent=Msa0193860-mRNA-1 |
| chr2_1 | five_prime_UTR | 9720829 | 9720963 | 9720829 | ID=Msa0193860-mRNA-1:five_prime_utr;Parent=Msa0193860-mRNA-1 |
| chr2_1 | CDS | 9720483 | 9720828 | 9720483 | ID=Msa0193860-mRNA-1:cds;Parent=Msa0193860-mRNA-1 |
| chr2_1 | CDS | 9717820 | 9718931 | 9717820 | ID=Msa0193860-mRNA-1:cds;Parent=Msa0193860-mRNA-1 |
| chr2_1 | CDS | 9717519 | 9717692 | 9717519 | ID=Msa0193860-mRNA-1:cds;Parent=Msa0193860-mRNA-1 |
| chr2_1 | CDS | 9717256 | 9717435 | 9717256 | ID=Msa0193860-mRNA-1:cds;Parent=Msa0193860-mRNA-1 |
| chr2_1 | CDS | 9716752 | 9716766 | 9716752 | ID=Msa0193860-mRNA-1:cds;Parent=Msa0193860-mRNA-1 |
| chr2_1 | three_prime_UTR | 9716436 | 9716751 | 9716436 | ID=Msa0193860-mRNA-1:three_prime_utr;Parent=Msa0193860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
