AlfalfaGEDB | Msa0194550

M. sativa cultivar zhongmu-4 / Msa0194550

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009889 GO:0009908 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0194550	XP_003593869.1	95.815	908	24	2	1	894	1	908	0.0	1776

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0194550	sp\|Q6H6V4\|ARFF_ORYSJ	62.283	920	286	22	9	894	16	908	0.0	1035

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0194550	G7IP35	95.815	908	24	2	1	894	1	908	0.0	1776

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TFs/TRs:

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Gene ID	Type	Classification
Msa0194550	TF	B3-ARF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0187940	Msa0194550	0.892560	1.419046e-74	-8.615850e-47
Msa0194550	Msa0268120	0.973112	7.028388e-136	-8.615850e-47
Msa0194550	Msa0298980	0.845146	4.871368e-59	-8.615850e-47
Msa0194550	Msa1448680	0.865273	6.653467e-65	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0194550	MtrunA17_Chr2g0285461	95.815	908	24	2	1	894	1	908	0.0	1776
Msa0194550	MtrunA17_Chr8g0376771	78.341	928	153	13	1	894	1	914	0.0	1359
Msa0194550	MtrunA17_Chr5g0433301	56.114	916	305	22	1	894	1	841	0.0	872
Msa0194550	MtrunA17_Chr3g0109391	54.171	923	285	24	17	894	20	849	0.0	844
Msa0194550	MtrunA17_Chr4g0070181	57.715	499	169	14	1	468	1	488	2.29e-164	509
Msa0194550	MtrunA17_Chr4g0070181	36.481	233	123	6	631	853	869	1086	1.02e-30	130
Msa0194550	MtrunA17_Chr2g0301251	56.436	505	166	15	1	467	1	489	5.13e-156	487
Msa0194550	MtrunA17_Chr2g0301251	57.273	110	43	2	761	870	986	1091	1.38e-31	133
Msa0194550	MtrunA17_Chr1g0156321	65.123	367	110	5	15	366	35	398	7.12e-154	474
Msa0194550	MtrunA17_Chr1g0156321	49.600	125	62	1	742	866	736	859	1.12e-29	127

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0194550	AT1G30330.1	84.189	487	54	7	1	470	1	481	0.0	812
Msa0194550	AT1G30330.3	83.845	489	54	8	1	470	1	483	0.0	808
Msa0194550	AT1G30330.2	83.845	489	54	8	1	470	1	483	0.0	808
Msa0194550	AT1G19850.1	41.530	915	421	27	13	869	43	901	0.0	558
Msa0194550	AT1G19850.2	41.530	915	421	27	13	869	32	890	0.0	558
Msa0194550	AT1G19220.1	57.143	504	165	15	1	469	1	488	1.18e-160	498
Msa0194550	AT1G19220.1	62.366	93	35	0	761	853	958	1050	1.43e-30	130
Msa0194550	AT5G20730.2	57.787	488	147	14	4	455	5	469	4.89e-155	486
Msa0194550	AT5G20730.3	57.669	489	147	15	4	455	5	470	1.96e-153	481
Msa0194550	AT5G20730.1	57.669	489	147	15	4	455	5	470	4.55e-153	481

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Find 299 sgRNAs with CRISPR-Local

Find 530 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGCATCTACTTACAAC+TGG	0.447091	2_1:-10746983	Msa0194550:CDS
AAACACATACCTTCTTGGGG+TGG	0.651129	2_1:+10748877	None:intergenic
AAACCAGGTTCACCAATACC+AGG	0.622204	2_1:+10744445	None:intergenic
AAAGGCAAACAAGAGCCAGA+AGG	0.576555	2_1:+10749292	None:intergenic
AAATGGGCAACACTGGCCTC+GGG	0.462909	2_1:-10743897	Msa0194550:CDS
AACAAACACATACCTTCTTG+GGG	0.638829	2_1:+10748874	None:intergenic
AACCACCGAACTTCCCGAAC+AGG	0.449860	2_1:-10745296	Msa0194550:CDS
AACCGATATGTATCAAGCTG+TGG	0.692664	2_1:-10745397	Msa0194550:CDS
AAGAATGGAACATGGGGTGT+TGG	0.403532	2_1:-10749227	Msa0194550:five_prime_UTR
AAGAGAGTATGTTTAAGGAA+AGG	0.497813	2_1:+10749395	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTGATTGAATGAAACTGAG+AGG	-	chr2_1:10742534-10742553	Msa0194550:three_prime_UTR	30.0%
AGAGAAAGAATCAGAAGTTA+AGG	-	chr2_1:10742581-10742600	Msa0194550:three_prime_UTR	30.0%
ATTGAAGTACAGTAGTAACT+TGG	+	chr2_1:10742622-10742641	None:intergenic	30.0%
AAGATCAAAAAGAACAAGAG+TGG	+	chr2_1:10742726-10742745	None:intergenic	30.0%
CAAAGGACAAATTGATTATG+GGG	+	chr2_1:10743761-10743780	None:intergenic	30.0%
CACAAAGGACAAATTGATTA+TGG	+	chr2_1:10743763-10743782	None:intergenic	30.0%
AAACCTCATAATTGTCACAA+AGG	+	chr2_1:10743778-10743797	None:intergenic	30.0%
TATAATACATGACATTGGGA+TGG	-	chr2_1:10743799-10743818	Msa0194550:CDS	30.0%
ACTTGAGAAACTGATAGATT+TGG	+	chr2_1:10744902-10744921	None:intergenic	30.0%
ATGAACATGTTTCTTGTTGA+GGG	-	chr2_1:10745090-10745109	Msa0194550:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	10742478	10749693	10742478	ID=Msa0194550;Name=Msa0194550
chr2_1	mRNA	10742478	10749693	10742478	ID=Msa0194550-mRNA-1;Parent=Msa0194550;Name=Msa0194550-mRNA-1;_AED=0.13;_eAED=0.13;_QI=764\|0.85\|0.86\|1\|0.92\|0.86\|15\|341\|894
chr2_1	exon	10742478	10742734	10742478	ID=Msa0194550-mRNA-1:exon:4841;Parent=Msa0194550-mRNA-1
chr2_1	exon	10743693	10743975	10743693	ID=Msa0194550-mRNA-1:exon:4840;Parent=Msa0194550-mRNA-1
chr2_1	exon	10744096	10744286	10744096	ID=Msa0194550-mRNA-1:exon:4839;Parent=Msa0194550-mRNA-1
chr2_1	exon	10744384	10745564	10744384	ID=Msa0194550-mRNA-1:exon:4838;Parent=Msa0194550-mRNA-1
chr2_1	exon	10745714	10745861	10745714	ID=Msa0194550-mRNA-1:exon:4837;Parent=Msa0194550-mRNA-1
chr2_1	exon	10746035	10746110	10746035	ID=Msa0194550-mRNA-1:exon:4836;Parent=Msa0194550-mRNA-1
chr2_1	exon	10746270	10746392	10746270	ID=Msa0194550-mRNA-1:exon:4835;Parent=Msa0194550-mRNA-1
chr2_1	exon	10746480	10746644	10746480	ID=Msa0194550-mRNA-1:exon:4834;Parent=Msa0194550-mRNA-1
chr2_1	exon	10746932	10747013	10746932	ID=Msa0194550-mRNA-1:exon:4833;Parent=Msa0194550-mRNA-1
chr2_1	exon	10747177	10747228	10747177	ID=Msa0194550-mRNA-1:exon:4832;Parent=Msa0194550-mRNA-1
chr2_1	exon	10747309	10747464	10747309	ID=Msa0194550-mRNA-1:exon:4831;Parent=Msa0194550-mRNA-1
chr2_1	exon	10747554	10747610	10747554	ID=Msa0194550-mRNA-1:exon:4830;Parent=Msa0194550-mRNA-1
chr2_1	exon	10747719	10747817	10747719	ID=Msa0194550-mRNA-1:exon:4829;Parent=Msa0194550-mRNA-1
chr2_1	exon	10748228	10748340	10748228	ID=Msa0194550-mRNA-1:exon:4828;Parent=Msa0194550-mRNA-1
chr2_1	exon	10748887	10749693	10748887	ID=Msa0194550-mRNA-1:exon:4827;Parent=Msa0194550-mRNA-1
chr2_1	five_prime_UTR	10748930	10749693	10748930	ID=Msa0194550-mRNA-1:five_prime_utr;Parent=Msa0194550-mRNA-1
chr2_1	CDS	10748887	10748929	10748887	ID=Msa0194550-mRNA-1:cds;Parent=Msa0194550-mRNA-1
chr2_1	CDS	10748228	10748340	10748228	ID=Msa0194550-mRNA-1:cds;Parent=Msa0194550-mRNA-1
chr2_1	CDS	10747719	10747817	10747719	ID=Msa0194550-mRNA-1:cds;Parent=Msa0194550-mRNA-1
chr2_1	CDS	10747554	10747610	10747554	ID=Msa0194550-mRNA-1:cds;Parent=Msa0194550-mRNA-1
chr2_1	CDS	10747309	10747464	10747309	ID=Msa0194550-mRNA-1:cds;Parent=Msa0194550-mRNA-1
chr2_1	CDS	10747177	10747228	10747177	ID=Msa0194550-mRNA-1:cds;Parent=Msa0194550-mRNA-1
chr2_1	CDS	10746932	10747013	10746932	ID=Msa0194550-mRNA-1:cds;Parent=Msa0194550-mRNA-1
chr2_1	CDS	10746480	10746644	10746480	ID=Msa0194550-mRNA-1:cds;Parent=Msa0194550-mRNA-1
chr2_1	CDS	10746270	10746392	10746270	ID=Msa0194550-mRNA-1:cds;Parent=Msa0194550-mRNA-1
chr2_1	CDS	10746035	10746110	10746035	ID=Msa0194550-mRNA-1:cds;Parent=Msa0194550-mRNA-1
chr2_1	CDS	10745714	10745861	10745714	ID=Msa0194550-mRNA-1:cds;Parent=Msa0194550-mRNA-1
chr2_1	CDS	10744384	10745564	10744384	ID=Msa0194550-mRNA-1:cds;Parent=Msa0194550-mRNA-1
chr2_1	CDS	10744096	10744286	10744096	ID=Msa0194550-mRNA-1:cds;Parent=Msa0194550-mRNA-1
chr2_1	CDS	10743777	10743975	10743777	ID=Msa0194550-mRNA-1:cds;Parent=Msa0194550-mRNA-1
chr2_1	three_prime_UTR	10743693	10743776	10743693	ID=Msa0194550-mRNA-1:three_prime_utr;Parent=Msa0194550-mRNA-1
chr2_1	three_prime_UTR	10742478	10742734	10742478	ID=Msa0194550-mRNA-1:three_prime_utr;Parent=Msa0194550-mRNA-1

Gene Sequence

>Msa0194550

ATGAGACTCTCTTCAGCTGGTTTTAGTCCTCCACCCCAAGAAGGGGAAAAGAGAGTTCTAGATTCAGAACTTTGGCATGCATGTGCTGGCCCTCTTGTCTCTTTGCCAGCAGTTGGAAGTAGAGTTGTGTACTTTCCACAAGGTCACAGTGAACAAGTGGCTGTGTCAACCAACAAGGAAGTCGATGCACATATCCCAAACTATCCAAGCTTACCTCCTCAGCTTATTTGTCAACTTCATAATTTGACTATGCATGCTGACGTGGAGACCGATGAGGTGTATGCGCAGATGACCTTGCAACCTCTGAATGCTCAAGAGCAAAAAGAGGCTTACCTTCCAGCAGAGCTGGGAACTCCAAGTAAACAGCCGACAAACTACTTTTGCAAGACCTTGACTGCTAGTGACACAAGCACTCATGGGGGATTCTCCGTGCCTCGCCGGGCGGCTGAAAAAGTGTTTCCTCCTTTGGATTTCTCCCAACAGCCTCCTGCTCAAGAGTTAATAGCAAGGGATTTGCATGGCCAGCCCAAAAGGCATCTACTTACAACTGGATGGAGTGTTTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCTGTGCTGAATGAAAAGAACCAATTGCTTCTTGGTATCCGCCGTGCTAGCCGACCACAAACTGTGATGCCTTCCTCAGTACTGTCAAGTGATAGTATGCACTTGGGACTTCTTGCTGCAGCAGCTCATGCGGCTGCAACCAATAGCCGTTTCACTATTTTCTATAACCCACGTGCGTGTCCATCCGAATTTGTCATACCCTTGGCGAAGTATGTTAAAGCTGTGTATCATACTCGAGTTTCAGTTGGTATGCGTTTCAGGATGCTCTTTGAAACAGAGGAGTCTAGTGTGCGACGATACATGGGTACAATAACTGGCATTTGTGACCTGGATTCTGTCCGGTGGCAGAACTCACATTGGCGCTCGGTAAAGGTTGGTTGGGATGAATCCACTGCCGGAGAAAGGCAACCTAGAGTGTCTTTGTGGGAAATCGAGCCATTAACAACATTTCCTATGTATCCGTCACCATTCCCTCTCAGGCTTAAACGACCGTGGCCTCCTGGATTGCCTTCGTTCCATGGCATGAAAGATGATGATTTTGGCATGAATTCTCCTTTGTTGTGGCTCCGAGACACGGATAGAGGGCTTCAATCTCTTAATTATCAAGGGATTGGGGTTAATTCTTGGATGCAGCCAAGGTTTGATCCCGCCATGCTTAATATGCAAACCGATATGTATCAAGCTGTGGCTGCTACTGCACTTCAGGACATGAGGACTGTAGTAGATCCTTCCAAACAGCTTCTGGGTTCCTTGCTTCAATTTCAGCAACCACCGAACTTCCCGAACAGGACCGCTGCTTTAATGCAGGCGCAGATGTTGCAACAGTCGCAGCCTCAACAGGCCTTTCAAAATAATAATCAGGAGAGTCAAAATCTGTCGCAATCTCAGCCACAAGCTCAGACTAATCCTCAACAGCATCTACAGCATCAGCACTCATTCAATAATCCACTCCGTCATCATAACCAGCAGCAACAACAAACTCAACAGCAAGTGGTGGATAATAATCAGCAGATTTCTGGTTCGGTCTCTACAATGTCTCAGTTTGTTTCAGCGACTCAACCTCAATCACCACCACCCATGCAAGCTCTCTCTTCATTATGCCATCAGGAGAGTTTTTCTGATTCAAATGTGAACTCTTCAACTACTATTGTTTCTCCTTTGCACAGTATCATGGGTTCATCGTTTCCGCATGATGAATCATCCCACCTTATGAGTCTTCCAAGAACAAGCTCTTGGGTTCCTGTTCAAAATTCAACTGGTTGGCCGTCGAAGCGCATTGCGGTGGATCCACTCCTCTCTTCGGGAGCATCTCAATGTATTCTGCCTCAGGTGGAGCAGTTAGGGCAGGCACAGAATTCATTGTCTCAAAATGTTATTACATTGCCACCGTTTCCTGGTAGGGAGTGCCCAATAGACCAAGAAGGGAGCAATGATCCGCAAAGTAATCTTTTATTCGGTGTCAATATAGATCCCTCATCTCTTCTAATGCATAATGGGATGTCGAACTTTAAGGGGATCAGTGGCAACAACAATGATTCCTCAACCATGTCCTACCATCAATCTTCTAATTACATGAACACCACAGGTGCTGATTCTTCGTTGAATCATGGAGTAACGCCTGGTATTGGTGAACCTGGTTTCTTGCATACCCAGGAAAACGGGGATCAAGGAAACAACCCACTGAACAAGACCTTTGTGAAGGTTTATAAATCAGGGTCCTTCGGAAGATCGTTGGATATCACTAAATTCAGCAGCTACAATGAGCTGCGTAGTGAGCTCGCCCGAATGTTCGGACTGGAAGGCGAGTTGGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGAGAGAATGATGTTCTTCTCCTCGGTGATGGCCCTTGGCCGGAATTTGTGAATAGTGTATGGTGCATCAAGATACTTTCGCCCGAGGAAGTGCAGCAAATGGGCAACACTGGCCTCGGGCTTTTGAACTCGGTTCCAATTCAAAGGCTCTCAAATAGCATTTGTGATGACTATGTGAGCCGTCAAGATTCAAGAAATCTAAGCAGCGGGATAACAACCGTGGGATCTCTAGACTACTAA

Protein sequence

>Msa0194550

MRLSSAGFSPPPQEGEKRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNKEVDAHIPNYPSLPPQLICQLHNLTMHADVETDEVYAQMTLQPLNAQEQKEAYLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGQPKRHLLTTGWSVFVSAKRLVAGDSVLNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRACPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGICDLDSVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFHGMKDDDFGMNSPLLWLRDTDRGLQSLNYQGIGVNSWMQPRFDPAMLNMQTDMYQAVAATALQDMRTVVDPSKQLLGSLLQFQQPPNFPNRTAALMQAQMLQQSQPQQAFQNNNQESQNLSQSQPQAQTNPQQHLQHQHSFNNPLRHHNQQQQQTQQQVVDNNQQISGSVSTMSQFVSATQPQSPPPMQALSSLCHQESFSDSNVNSSTTIVSPLHSIMGSSFPHDESSHLMSLPRTSSWVPVQNSTGWPSKRIAVDPLLSSGASQCILPQVEQLGQAQNSLSQNVITLPPFPGRECPIDQEGSNDPQSNLLFGVNIDPSSLLMHNGMSNFKGISGNNNDSSTMSYHQSSNYMNTTGADSSLNHGVTPGIGEPGFLHTQENGDQGNNPLNKTFVKVYKSGSFGRSLDITKFSSYNELRSELARMFGLEGELEDPVRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPEEVQQMGNTGLGLLNSVPIQRLSNSICDDYVSRQDSRNLSSGITTVGSLDY*