AlfalfaGEDB | Msa0187940

M. sativa cultivar zhongmu-4 / Msa0187940

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009889 GO:0009908 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0187940	XP_003593869.1	95.815	908	24	2	1	894	1	908	0.0	1776

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0187940	sp\|Q6H6V4\|ARFF_ORYSJ	62.283	920	286	22	9	894	16	908	0.0	1035

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0187940	G7IP35	95.815	908	24	2	1	894	1	908	0.0	1776

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TFs/TRs:

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Gene ID	Type	Classification
Msa0187940	TF	B3-ARF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0102240	Msa0187940	0.819313	1.240309e-52	-8.615850e-47
Msa0187940	Msa0194550	0.892560	1.419046e-74	-8.615850e-47
Msa0187940	Msa0244790	0.948128	1.741854e-106	-8.615850e-47
Msa0187940	Msa0268120	0.921261	4.486663e-88	-8.615850e-47
Msa0187940	Msa0298980	0.977820	1.500152e-144	-8.615850e-47
Msa0187940	Msa0300840	0.830732	2.488974e-55	-8.615850e-47
Msa0187940	Msa0369420	0.814127	1.804859e-51	-8.615850e-47
Msa0187940	Msa0412790	0.822213	2.671896e-53	-8.615850e-47
Msa0187940	Msa0463530	0.801424	9.063858e-49	-8.615850e-47
Msa0187940	Msa0555860	-0.817132	3.864316e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0187940	MtrunA17_Chr2g0285461	95.815	908	24	2	1	894	1	908	0.0	1776
Msa0187940	MtrunA17_Chr8g0376771	78.341	928	153	13	1	894	1	914	0.0	1359
Msa0187940	MtrunA17_Chr5g0433301	56.114	916	305	22	1	894	1	841	0.0	872
Msa0187940	MtrunA17_Chr3g0109391	54.171	923	285	24	17	894	20	849	0.0	844
Msa0187940	MtrunA17_Chr4g0070181	57.715	499	169	14	1	468	1	488	2.29e-164	509
Msa0187940	MtrunA17_Chr4g0070181	36.481	233	123	6	631	853	869	1086	1.02e-30	130
Msa0187940	MtrunA17_Chr2g0301251	56.436	505	166	15	1	467	1	489	5.13e-156	487
Msa0187940	MtrunA17_Chr2g0301251	57.273	110	43	2	761	870	986	1091	1.38e-31	133
Msa0187940	MtrunA17_Chr1g0156321	65.123	367	110	5	15	366	35	398	7.12e-154	474
Msa0187940	MtrunA17_Chr1g0156321	49.600	125	62	1	742	866	736	859	1.12e-29	127

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0187940	AT1G30330.1	84.189	487	54	7	1	470	1	481	0.0	812
Msa0187940	AT1G30330.3	83.845	489	54	8	1	470	1	483	0.0	808
Msa0187940	AT1G30330.2	83.845	489	54	8	1	470	1	483	0.0	808
Msa0187940	AT1G19850.1	41.530	915	421	27	13	869	43	901	0.0	558
Msa0187940	AT1G19850.2	41.530	915	421	27	13	869	32	890	0.0	558
Msa0187940	AT1G19220.1	57.143	504	165	15	1	469	1	488	1.18e-160	498
Msa0187940	AT1G19220.1	62.366	93	35	0	761	853	958	1050	1.43e-30	130
Msa0187940	AT5G20730.2	57.787	488	147	14	4	455	5	469	4.89e-155	486
Msa0187940	AT5G20730.3	57.669	489	147	15	4	455	5	470	1.96e-153	481
Msa0187940	AT5G20730.1	57.669	489	147	15	4	455	5	470	4.55e-153	481

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Find 298 sgRNAs with CRISPR-Local

Find 527 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGCATCTACTTACAAC+TGG	0.447091	2_1:-2749016	Msa0187940:CDS
AAACACATACCTTCTTGGGG+TGG	0.651129	2_1:+2750908	None:intergenic
AAACCAGGTTCACCAATACC+AGG	0.622204	2_1:+2746478	None:intergenic
AAAGAAGAAAGAGAATAACA+GGG	0.675784	2_1:-2751084	Msa0187940:five_prime_UTR
AAATGGGCAACACTGGCCTC+GGG	0.462909	2_1:-2745930	Msa0187940:CDS
AACAAACACATACCTTCTTG+GGG	0.638829	2_1:+2750905	None:intergenic
AACCACCGAACTTCCCGAAC+AGG	0.449860	2_1:-2747329	Msa0187940:CDS
AACCGATATGTATCAAGCTG+TGG	0.692664	2_1:-2747430	Msa0187940:CDS
AAGAATGGAACATGGGGTGT+TGG	0.403532	2_1:-2751256	Msa0187940:five_prime_UTR
AAGAGAGTATGTTTAAGGAA+AGG	0.497813	2_1:+2751429	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTGATTGAATGAAACTGAG+AGG	-	chr2_1:2744567-2744586	Msa0187940:three_prime_UTR	30.0%
AGAGAAAGAATCAGAAGTTA+AGG	-	chr2_1:2744614-2744633	Msa0187940:three_prime_UTR	30.0%
ATTGAAGTACAGTAGTAACT+TGG	+	chr2_1:2744655-2744674	None:intergenic	30.0%
TCAAAAAGAACAAGAGTTGT+GGG	+	chr2_1:2744755-2744774	None:intergenic	30.0%
ATCAAAAAGAACAAGAGTTG+TGG	+	chr2_1:2744756-2744775	None:intergenic	30.0%
AGAAAAGAAAAGAAACCAGA+AGG	+	chr2_1:2744893-2744912	None:intergenic	30.0%
GAAAGAAGAAAGAGAATAAC+AGG	-	chr2_1:2745131-2745150	Msa0187940:intron	30.0%
CAAAGGACAAATTGATTATG+GGG	+	chr2_1:2745795-2745814	None:intergenic	30.0%
CACAAAGGACAAATTGATTA+TGG	+	chr2_1:2745797-2745816	None:intergenic	30.0%
AAACCTCATAATTGTCACAA+AGG	+	chr2_1:2745812-2745831	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	2744511	2751727	2744511	ID=Msa0187940;Name=Msa0187940
chr2_1	mRNA	2744511	2751727	2744511	ID=Msa0187940-mRNA-1;Parent=Msa0187940;Name=Msa0187940-mRNA-1;_AED=0.13;_eAED=0.13;_QI=767\|0.85\|0.86\|1\|0.92\|0.86\|15\|341\|894
chr2_1	exon	2744511	2744767	2744511	ID=Msa0187940-mRNA-1:exon:1275;Parent=Msa0187940-mRNA-1
chr2_1	exon	2745726	2746008	2745726	ID=Msa0187940-mRNA-1:exon:1274;Parent=Msa0187940-mRNA-1
chr2_1	exon	2746129	2746319	2746129	ID=Msa0187940-mRNA-1:exon:1273;Parent=Msa0187940-mRNA-1
chr2_1	exon	2746417	2747597	2746417	ID=Msa0187940-mRNA-1:exon:1272;Parent=Msa0187940-mRNA-1
chr2_1	exon	2747747	2747894	2747747	ID=Msa0187940-mRNA-1:exon:1271;Parent=Msa0187940-mRNA-1
chr2_1	exon	2748068	2748143	2748068	ID=Msa0187940-mRNA-1:exon:1270;Parent=Msa0187940-mRNA-1
chr2_1	exon	2748303	2748425	2748303	ID=Msa0187940-mRNA-1:exon:1269;Parent=Msa0187940-mRNA-1
chr2_1	exon	2748513	2748677	2748513	ID=Msa0187940-mRNA-1:exon:1268;Parent=Msa0187940-mRNA-1
chr2_1	exon	2748965	2749046	2748965	ID=Msa0187940-mRNA-1:exon:1267;Parent=Msa0187940-mRNA-1
chr2_1	exon	2749210	2749261	2749210	ID=Msa0187940-mRNA-1:exon:1266;Parent=Msa0187940-mRNA-1
chr2_1	exon	2749342	2749497	2749342	ID=Msa0187940-mRNA-1:exon:1265;Parent=Msa0187940-mRNA-1
chr2_1	exon	2749587	2749643	2749587	ID=Msa0187940-mRNA-1:exon:1264;Parent=Msa0187940-mRNA-1
chr2_1	exon	2749752	2749850	2749752	ID=Msa0187940-mRNA-1:exon:1263;Parent=Msa0187940-mRNA-1
chr2_1	exon	2750261	2750373	2750261	ID=Msa0187940-mRNA-1:exon:1262;Parent=Msa0187940-mRNA-1
chr2_1	exon	2750918	2751727	2750918	ID=Msa0187940-mRNA-1:exon:1261;Parent=Msa0187940-mRNA-1
chr2_1	five_prime_UTR	2750961	2751727	2750961	ID=Msa0187940-mRNA-1:five_prime_utr;Parent=Msa0187940-mRNA-1
chr2_1	CDS	2750918	2750960	2750918	ID=Msa0187940-mRNA-1:cds;Parent=Msa0187940-mRNA-1
chr2_1	CDS	2750261	2750373	2750261	ID=Msa0187940-mRNA-1:cds;Parent=Msa0187940-mRNA-1
chr2_1	CDS	2749752	2749850	2749752	ID=Msa0187940-mRNA-1:cds;Parent=Msa0187940-mRNA-1
chr2_1	CDS	2749587	2749643	2749587	ID=Msa0187940-mRNA-1:cds;Parent=Msa0187940-mRNA-1
chr2_1	CDS	2749342	2749497	2749342	ID=Msa0187940-mRNA-1:cds;Parent=Msa0187940-mRNA-1
chr2_1	CDS	2749210	2749261	2749210	ID=Msa0187940-mRNA-1:cds;Parent=Msa0187940-mRNA-1
chr2_1	CDS	2748965	2749046	2748965	ID=Msa0187940-mRNA-1:cds;Parent=Msa0187940-mRNA-1
chr2_1	CDS	2748513	2748677	2748513	ID=Msa0187940-mRNA-1:cds;Parent=Msa0187940-mRNA-1
chr2_1	CDS	2748303	2748425	2748303	ID=Msa0187940-mRNA-1:cds;Parent=Msa0187940-mRNA-1
chr2_1	CDS	2748068	2748143	2748068	ID=Msa0187940-mRNA-1:cds;Parent=Msa0187940-mRNA-1
chr2_1	CDS	2747747	2747894	2747747	ID=Msa0187940-mRNA-1:cds;Parent=Msa0187940-mRNA-1
chr2_1	CDS	2746417	2747597	2746417	ID=Msa0187940-mRNA-1:cds;Parent=Msa0187940-mRNA-1
chr2_1	CDS	2746129	2746319	2746129	ID=Msa0187940-mRNA-1:cds;Parent=Msa0187940-mRNA-1
chr2_1	CDS	2745810	2746008	2745810	ID=Msa0187940-mRNA-1:cds;Parent=Msa0187940-mRNA-1
chr2_1	three_prime_UTR	2745726	2745809	2745726	ID=Msa0187940-mRNA-1:three_prime_utr;Parent=Msa0187940-mRNA-1
chr2_1	three_prime_UTR	2744511	2744767	2744511	ID=Msa0187940-mRNA-1:three_prime_utr;Parent=Msa0187940-mRNA-1

Gene Sequence

>Msa0187940

ATGAGACTCTCTTCAGCTGGTTTTAGTCCTCCACCCCAAGAAGGGGAAAAGAGAGTTCTAGATTCAGAACTTTGGCATGCATGTGCTGGCCCTCTTGTCTCTTTGCCAGCAGTTGGAAGTAGAGTTGTGTACTTTCCACAAGGTCACAGTGAACAAGTGGCTGTGTCAACCAACAAGGAAGTCGATGCACATATCCCAAACTATCCAAGCTTACCTCCTCAGCTTATTTGTCAACTTCATAATTTGACTATGCATGCTGACGTGGAGACCGATGAGGTGTATGCGCAGATGACCTTGCAACCTCTGAATGCTCAAGAGCAAAAAGAGGCTTACCTTCCAGCAGAGCTGGGAACTCCAAGTAAACAGCCGACAAACTACTTTTGCAAGACCTTGACTGCTAGTGACACAAGCACTCACGGGGGATTCTCCGTGCCTCGCCGGGCGGCTGAAAAAGTGTTTCCTCCTTTGGATTTCTCCCAACAGCCTCCTGCTCAAGAGTTAATAGCAAGGGATTTGCATGGCCAGCCCAAAAGGCATCTACTTACAACTGGATGGAGTGTTTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCTGTGCTGAATGAAAAGAACCAATTGCTTCTTGGTATCCGCCGTGCTAGCAGACCACAAACTGTGATGCCTTCCTCAGTACTGTCAAGTGATAGTATGCACTTGGGACTTCTTGCTGCAGCAGCTCATGCGGCTGCAACCAATAGCCGTTTCACTATTTTCTATAACCCACGTGCGTGTCCATCCGAATTTGTCATACCCTTGGCGAAGTATGTTAAAGCTGTGTATCATACTCGAGTTTCAGTTGGTATGCGTTTCAGGATGCTCTTTGAAACAGAGGAGTCTAGTGTGCGACGATACATGGGTACAATAACTGGCATTTGTGACCTGGATTCTGTCCGGTGGCAGAACTCACATTGGCGCTCGGTAAAGGTTGGTTGGGATGAATCCACTGCCGGAGAAAGGCAACCTAGAGTGTCTTTGTGGGAAATCGAGCCATTAACAACATTTCCTATGTATCCGTCACCATTCCCTCTCAGGCTTAAACGACCGTGGCCTCCTGGATTGCCTTCGTTCCATGGCATGAAAGATGATGATTTTGGCATGAATTCTCCTTTGTTGTGGCTCCGAGACACGGATAGAGGGCTTCAATCTCTTAATTATCAAGGGATTGGGGTTAATTCTTGGATGCAGCCAAGGTTTGATCCCGCCATGCTTAATATGCAAACCGATATGTATCAAGCTGTGGCTGCTACTGCACTTCAGGACATGAGGACTGTAGTAGATCCTTCCAAACAGCTTCTGGGTTCCTTGCTTCAATTTCAGCAACCACCGAACTTCCCGAACAGGACCGCTGCTTTAATGCAGGCGCAGATGTTGCAACAGTCGCAGCCTCAACAGGCCTTTCAAAATAATAATCAGGAGAGTCAAAATCTGTCGCAATCTCAGCCACAAGCTCAGACTAATCCTCAACAGCATCTACAGCATCAGCACTCATTCAATAATCCACTCCGTCATCATAACCAGCAGCAACAACAAACTCAACAGCAAGTGGTGGATAATAATCAGCAGATTTCTGGTTCGGTCTCTACAATGTCTCAGTTTGTTTCAGCGACTCAACCTCAATCACCACCACCCATGCAAGCTCTCTCTTCATTATGCCATCAGGAGAGTTTTTCTGATTCAAATGTGAACTCTTCAACTACTATTGTTTCTCCTTTGCACAGTATCATGGGTTCATCGTTTCCGCATGATGAATCATCCCACCTTATGAGTCTTCCAAGAACAAGCTCTTGGGTTCCTGTTCAAAATTCAACTGGTTGGCCGTCGAAGCGCATTGCGGTGGATCCACTCCTCTCTTCGGGAGCATCTCAATGTATTCTGCCTCAGGTGGAGCAGTTAGGGCAGGCACAGAATTCATTGTCTCAAAATGTTATTACATTGCCACCGTTTCCTGGTAGGGAGTGCCCAATAGACCAAGAAGGGAGCAATGATCCGCAAAGTAATCTTTTATTCGGTGTCAATATAGATCCCTCATCTCTTCTAATGCATAATGGGATGTCGAACTTTAAGGGGATCAGTGGCAACAACAATGATTCCTCAACCATGTCCTACCATCAATCTTCTAATTACATGAACACCACAGGTGCTGATTCTTCGTTGAATCATGGAGTAACGCCTGGTATTGGTGAACCTGGTTTCTTGCATACCCAGGAAAACGGGGATCAAGGAAACAACCCACTGAACAAGACCTTTGTGAAGGTTTATAAATCAGGGTCCTTCGGAAGATCGTTGGATATCACTAAATTCAGCAGCTACAATGAGCTGCGTAGTGAGCTCGCCCGAATGTTCGGACTGGAAGGCGAGTTGGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGAGAGAATGATGTTCTTCTCCTCGGTGATGGCCCTTGGCCGGAATTCGTGAATAGTGTATGGTGCATCAAGATACTTTCGCCCGAGGAAGTGCAGCAAATGGGCAACACTGGCCTCGGGCTTTTGAACTCGGTTCCAATTCAAAGGCTCTCAAATAGCATTTGTGATGACTATGTGAGCCGTCAAGATTCAAGAAATCTAAGCAGCGGGATAACAACCGTGGGATCTCTAGACTACTAA

Protein sequence

>Msa0187940

MRLSSAGFSPPPQEGEKRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNKEVDAHIPNYPSLPPQLICQLHNLTMHADVETDEVYAQMTLQPLNAQEQKEAYLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGQPKRHLLTTGWSVFVSAKRLVAGDSVLNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRACPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGICDLDSVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFHGMKDDDFGMNSPLLWLRDTDRGLQSLNYQGIGVNSWMQPRFDPAMLNMQTDMYQAVAATALQDMRTVVDPSKQLLGSLLQFQQPPNFPNRTAALMQAQMLQQSQPQQAFQNNNQESQNLSQSQPQAQTNPQQHLQHQHSFNNPLRHHNQQQQQTQQQVVDNNQQISGSVSTMSQFVSATQPQSPPPMQALSSLCHQESFSDSNVNSSTTIVSPLHSIMGSSFPHDESSHLMSLPRTSSWVPVQNSTGWPSKRIAVDPLLSSGASQCILPQVEQLGQAQNSLSQNVITLPPFPGRECPIDQEGSNDPQSNLLFGVNIDPSSLLMHNGMSNFKGISGNNNDSSTMSYHQSSNYMNTTGADSSLNHGVTPGIGEPGFLHTQENGDQGNNPLNKTFVKVYKSGSFGRSLDITKFSSYNELRSELARMFGLEGELEDPVRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPEEVQQMGNTGLGLLNSVPIQRLSNSICDDYVSRQDSRNLSSGITTVGSLDY*