Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0194690 | AES64135.2 | 98.996 | 896 | 7 | 1 | 1 | 896 | 1 | 894 | 0.0 | 1839 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0194690 | sp|Q9FFU6|B561A_ARATH | 64.088 | 905 | 309 | 7 | 3 | 894 | 5 | 906 | 0.0 | 1202 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0194690 | G7IP50 | 98.996 | 896 | 7 | 1 | 1 | 896 | 1 | 894 | 0.0 | 1839 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0194690 | Msa0236770 | 0.854485 | 1.193051e-61 | -8.615850e-47 |
| Msa0194690 | Msa0621260 | 0.971634 | 1.794540e-133 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0194690 | MtrunA17_Chr2g0285681 | 99.347 | 766 | 3 | 1 | 1 | 766 | 1 | 764 | 0.0 | 1580 |
| Msa0194690 | MtrunA17_Chr2g0285691 | 97.826 | 92 | 2 | 0 | 805 | 896 | 1 | 92 | 4.95e-57 | 190 |
| Msa0194690 | MtrunA17_Chr7g0275621 | 24.629 | 337 | 216 | 9 | 520 | 844 | 74 | 384 | 7.95e-14 | 74.7 |
| Msa0194690 | MtrunA17_Chr4g0076051 | 27.835 | 194 | 125 | 5 | 625 | 810 | 153 | 339 | 9.94e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0194690 | AT5G54830.1 | 64.088 | 905 | 309 | 7 | 3 | 894 | 5 | 906 | 0.0 | 1202 |
Find 238 sgRNAs with CRISPR-Local
Find 276 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTCCCCATTTGATGGTTT+TGG | 0.097688 | 2_1:-10960682 | None:intergenic |
| CAACGTTTAAAAGGATAATT+TGG | 0.111755 | 2_1:+10960707 | Msa0194690:CDS |
| ATTCCAACTGCATCAAATTT+TGG | 0.141719 | 2_1:+10958753 | Msa0194690:CDS |
| AGCTCAACACATGTTAAATT+TGG | 0.155830 | 2_1:+10960604 | Msa0194690:CDS |
| CGGCTAACATGACTGTTATT+TGG | 0.161465 | 2_1:+10959309 | Msa0194690:CDS |
| GCATCTATCTACCTGTTTAA+AGG | 0.181231 | 2_1:-10961060 | None:intergenic |
| GGATATTTGGAAGAGGAAAT+TGG | 0.191249 | 2_1:+10960929 | Msa0194690:CDS |
| TCACTTGGGCAATGATAATT+TGG | 0.204909 | 2_1:+10960842 | Msa0194690:CDS |
| TTGAACAACGAATGTTAAAT+TGG | 0.224862 | 2_1:-10958679 | None:intergenic |
| GCAGGATTTGCTTCCAGTTT+TGG | 0.242070 | 2_1:+10960390 | Msa0194690:CDS |
| ATCAACAGGTTACCTTCTTT+TGG | 0.247908 | 2_1:+10959921 | Msa0194690:CDS |
| CGAGCACGGGATCGGATATT+TGG | 0.251463 | 2_1:+10960916 | Msa0194690:CDS |
| ATCGATGAAGGAACTGTTTC+GGG | 0.254510 | 2_1:-10958457 | None:intergenic |
| AACATTTGAAGGGTGATAAT+TGG | 0.254622 | 2_1:+10960488 | Msa0194690:CDS |
| TCTCAATTTGATATGTTATC+TGG | 0.254696 | 2_1:+10958558 | Msa0194690:CDS |
| TTCGGTGTATGAGAAGAAAA+TGG | 0.264953 | 2_1:+10959832 | Msa0194690:CDS |
| TGATCCCTGTTCTTTCTGTT+TGG | 0.265660 | 2_1:+10958727 | Msa0194690:CDS |
| TATCACCCTTCAAATGTTTC+AGG | 0.272420 | 2_1:-10960483 | None:intergenic |
| GGTCTTCCGTTTGAGACTTT+TGG | 0.272852 | 2_1:+10959395 | Msa0194690:CDS |
| GATCCCTGTTCTTTCTGTTT+GGG | 0.275825 | 2_1:+10958728 | Msa0194690:CDS |
| TTTCGAATCCGATTTCATTA+TGG | 0.284559 | 2_1:+10958479 | Msa0194690:CDS |
| TTGGCAGGATTTGGCGGGTT+AGG | 0.288091 | 2_1:-10959557 | None:intergenic |
| TAAAGAATCTTGGCAGGATT+TGG | 0.299021 | 2_1:-10959566 | None:intergenic |
| TGGAATTGCTGCAATAGTTT+TGG | 0.303405 | 2_1:+10960624 | Msa0194690:CDS |
| CCTTGGTTCCATCTTGTAGT+AGG | 0.312930 | 2_1:+10960197 | Msa0194690:CDS |
| GCATGGGGTATCTTGCTTCC+TGG | 0.316197 | 2_1:+10960439 | Msa0194690:CDS |
| CTTGCTTCCTGGAGGTATCT+TGG | 0.318098 | 2_1:+10960450 | Msa0194690:CDS |
| CTAGTCCCACGGAACTAGTT+TGG | 0.323814 | 2_1:+10959771 | Msa0194690:CDS |
| GTTATGAATTACATGGCTTT+TGG | 0.328103 | 2_1:+10958972 | Msa0194690:CDS |
| TGGTGCTGATGTGGCGGTTA+CGG | 0.329797 | 2_1:+10959034 | Msa0194690:CDS |
| GGTTATCTTGCCATAGGATT+TGG | 0.331663 | 2_1:+10959995 | Msa0194690:CDS |
| ACCTGTTTAAAGGTTCTAAC+TGG | 0.335200 | 2_1:-10961050 | None:intergenic |
| TCAATTGAGATTGGTTTAGA+AGG | 0.336814 | 2_1:+10958939 | Msa0194690:CDS |
| GTTAACACTTACTGGATTGA+TGG | 0.338446 | 2_1:+10960079 | Msa0194690:CDS |
| AAACCATGCACGGCCAAAAC+TGG | 0.343302 | 2_1:-10960403 | None:intergenic |
| GATTCTTTACATCAACAAAA+AGG | 0.346577 | 2_1:+10959580 | Msa0194690:CDS |
| ATGATAATTTGGTTCTTAGT+AGG | 0.347365 | 2_1:+10960853 | Msa0194690:CDS |
| GGTGCTGATGTGGCGGTTAC+GGG | 0.348511 | 2_1:+10959035 | Msa0194690:CDS |
| GGGAGCAGCCAACGTTTAAA+AGG | 0.348957 | 2_1:+10960698 | Msa0194690:CDS |
| TCCTGAGGCTCATGGTGTTC+AGG | 0.352665 | 2_1:+10959748 | Msa0194690:CDS |
| GGCTAACATGACTGTTATTT+GGG | 0.359054 | 2_1:+10959310 | Msa0194690:CDS |
| GGAGAGTGGAGGTTGTGGAC+GGG | 0.363911 | 2_1:+10959858 | Msa0194690:CDS |
| GAAGGAGAAGGAGAAGAATA+AGG | 0.367053 | 2_1:+10958824 | Msa0194690:CDS |
| AATGATACAAGGTTGATATA+CGG | 0.367078 | 2_1:+10959200 | Msa0194690:CDS |
| TGGCAGGATTTGGCGGGTTA+GGG | 0.367973 | 2_1:-10959556 | None:intergenic |
| TTGGTCGTGTTAACACTTAC+TGG | 0.371151 | 2_1:+10960071 | Msa0194690:CDS |
| TTTGTTGATGTAAAGAATCT+TGG | 0.376375 | 2_1:-10959576 | None:intergenic |
| ATTGGTTTAGAAGGTGCAAC+TGG | 0.377218 | 2_1:+10958948 | Msa0194690:CDS |
| ATGACTGTTATTTGGGCGTT+GGG | 0.381712 | 2_1:+10959317 | Msa0194690:CDS |
| AGCTCGGAATCAGTAGCATT+AGG | 0.382038 | 2_1:-10959005 | None:intergenic |
| CAACTCCACTTAAAGTCATA+TGG | 0.387100 | 2_1:+10960257 | Msa0194690:CDS |
| TATGCTTTGGAAAACGTTCA+TGG | 0.388460 | 2_1:+10960817 | Msa0194690:CDS |
| TGATCAGGAGTGTTCCTATC+AGG | 0.389061 | 2_1:-10959797 | None:intergenic |
| TTTGGGAGACAGATATGCTT+TGG | 0.389075 | 2_1:+10960804 | Msa0194690:CDS |
| AAAGAGGATTCAATTGAGAT+TGG | 0.391885 | 2_1:+10958930 | Msa0194690:CDS |
| GTATAACAACAGTGTTGTTC+TGG | 0.392054 | 2_1:+10959895 | Msa0194690:CDS |
| TTTACTGGCATGAAGCATTT+GGG | 0.393832 | 2_1:+10960787 | Msa0194690:CDS |
| AATCGATGAAGGAACTGTTT+CGG | 0.396822 | 2_1:-10958458 | None:intergenic |
| GTTGGCTGCTCCCCATTTGA+TGG | 0.397291 | 2_1:-10960688 | None:intergenic |
| TGTTGTTCTGGATGATCAAC+AGG | 0.405150 | 2_1:+10959907 | Msa0194690:CDS |
| TAGTCCCACGGAACTAGTTT+GGG | 0.406291 | 2_1:+10959772 | Msa0194690:CDS |
| AACGTTTAAAAGGATAATTT+GGG | 0.407306 | 2_1:+10960708 | Msa0194690:CDS |
| GAACTGTTTCGGGTGCATTT+CGG | 0.409708 | 2_1:-10958447 | None:intergenic |
| GGAAGACGGGTTGCCATTTG+TGG | 0.409956 | 2_1:+10959064 | Msa0194690:CDS |
| ATGTTGAACCATAATGAAAT+CGG | 0.413668 | 2_1:-10958487 | None:intergenic |
| AACTATGTTTGATAATTGTA+AGG | 0.416063 | 2_1:+10958866 | Msa0194690:CDS |
| GGAAGAGGAAATTGGGTGCT+TGG | 0.421239 | 2_1:+10960937 | Msa0194690:CDS |
| GTTCCATTGGTTGTTTCCAC+TGG | 0.421377 | 2_1:+10959518 | Msa0194690:CDS |
| AATTGATGAAGAATGTTACT+TGG | 0.421489 | 2_1:+10958700 | Msa0194690:CDS |
| CTTGGTTCCATCTTGTAGTA+GGG | 0.421955 | 2_1:+10960198 | Msa0194690:CDS |
| ATTGGTTGTTTCCACTGGTC+CGG | 0.424350 | 2_1:+10959523 | Msa0194690:CDS |
| TTTGTTGAAAGTGGAATTGT+TGG | 0.425789 | 2_1:-10960994 | None:intergenic |
| CACTTACTGGATTGATGGAC+AGG | 0.426039 | 2_1:+10960084 | Msa0194690:CDS |
| TCCAGTTAGAACCTTTAAAC+AGG | 0.426564 | 2_1:+10961049 | Msa0194690:CDS |
| ATTGCCCATATGACTTTAAG+TGG | 0.427061 | 2_1:-10960262 | None:intergenic |
| AACTAGTTTGGGCTCCTGAT+AGG | 0.428703 | 2_1:+10959783 | Msa0194690:CDS |
| TGGAGAGTGGAGGTTGTGGA+CGG | 0.432590 | 2_1:+10959857 | Msa0194690:CDS |
| TTTCGGGTGCATTTCGGAGC+AGG | 0.434132 | 2_1:-10958441 | None:intergenic |
| TTCACAGGCTTCTGCAAGAA+TGG | 0.438288 | 2_1:+10961023 | Msa0194690:CDS |
| CATGTTTACTTGCAATACTC+AGG | 0.441942 | 2_1:+10960520 | Msa0194690:CDS |
| GAGAGTGGAGGTTGTGGACG+GGG | 0.443990 | 2_1:+10959859 | Msa0194690:CDS |
| GAATATTTGCACATAATTGT+TGG | 0.444607 | 2_1:+10960730 | Msa0194690:CDS |
| ATATCCCAAACAGAAAGAAC+AGG | 0.448559 | 2_1:-10958732 | None:intergenic |
| GGACCTTCATATATCGAATC+AGG | 0.448577 | 2_1:-10959158 | None:intergenic |
| ATCTCCTCCCTCGTTCTTCG+TGG | 0.449854 | 2_1:-10958799 | None:intergenic |
| TTCAACAAATAAAGATTCAC+AGG | 0.453086 | 2_1:+10961008 | Msa0194690:CDS |
| TGATCAATCTGTTGTTCAAT+CGG | 0.455252 | 2_1:+10959289 | Msa0194690:CDS |
| CTTCAAATGTTTCAGGTACC+TGG | 0.455447 | 2_1:-10960476 | None:intergenic |
| CTGGAGGTATCTTGGCAGCC+AGG | 0.457385 | 2_1:+10960458 | Msa0194690:CDS |
| TGGCTCTGATGTGCATTGGT+GGG | 0.457456 | 2_1:+10958578 | Msa0194690:CDS |
| AGACCTTTGAGTCAGGTTGA+TGG | 0.457589 | 2_1:+10959260 | Msa0194690:CDS |
| GGGAGGAGATGGGAAGGAGA+AGG | 0.463195 | 2_1:+10958812 | Msa0194690:CDS |
| ACTGATTCCGAGCTTATGAT+TGG | 0.463497 | 2_1:+10959014 | Msa0194690:CDS |
| GCTCGGAATCAGTAGCATTA+GGG | 0.465085 | 2_1:-10959004 | None:intergenic |
| CTGGCTCTGATGTGCATTGG+TGG | 0.465288 | 2_1:+10958577 | Msa0194690:CDS |
| GGGTTGGAGAGTGGAGGTTG+TGG | 0.465828 | 2_1:+10959853 | Msa0194690:CDS |
| TTCACCAAACCAACTCTATC+CGG | 0.466393 | 2_1:-10959179 | None:intergenic |
| TGACCAAAATTTGATGCAGT+TGG | 0.469612 | 2_1:-10958756 | None:intergenic |
| GATATTTGGAAGAGGAAATT+GGG | 0.472653 | 2_1:+10960930 | Msa0194690:CDS |
| CTTAAAGTCATATGGGCAAT+GGG | 0.473317 | 2_1:+10960265 | Msa0194690:CDS |
| CATCTTGTAGTAGGGGCAAA+AGG | 0.473661 | 2_1:+10960206 | Msa0194690:CDS |
| ATATAAGAGACCTTTGAGTC+AGG | 0.477326 | 2_1:+10959253 | Msa0194690:CDS |
| AAAACGTTCATGGACTCACT+TGG | 0.477332 | 2_1:+10960827 | Msa0194690:CDS |
| ACGAAGAACGAGGGAGGAGA+TGG | 0.478754 | 2_1:+10958801 | Msa0194690:CDS |
| TAATGCGGTAAAACAGTATC+CGG | 0.478815 | 2_1:-10959353 | None:intergenic |
| GAATGATAGTAGATCTGATC+AGG | 0.479177 | 2_1:-10959812 | None:intergenic |
| CATGACTGTTATTTGGGCGT+TGG | 0.479843 | 2_1:+10959316 | Msa0194690:CDS |
| GATAAACAGTTATACATATG+TGG | 0.480665 | 2_1:+10960027 | Msa0194690:CDS |
| TTACAATTATCAAACATAGT+TGG | 0.481504 | 2_1:-10958864 | None:intergenic |
| GAATCTTTATTTGTTGAAAG+TGG | 0.482826 | 2_1:-10961003 | None:intergenic |
| TTGGAGTTTGAATTTGAAAG+AGG | 0.482994 | 2_1:+10958914 | Msa0194690:CDS |
| TATGGGCAATGGGTAGTAGA+TGG | 0.485381 | 2_1:+10960275 | Msa0194690:CDS |
| ATCGGATTCGAAATCGATGA+AGG | 0.494635 | 2_1:-10958469 | None:intergenic |
| ATGACTTTAAGTGGAGTTGT+GGG | 0.494726 | 2_1:-10960253 | None:intergenic |
| TTTGCGGTTGCTGAGCTTCG+CGG | 0.494762 | 2_1:+10960571 | Msa0194690:CDS |
| ATTGGAATTTACACGTCCCT+TGG | 0.496061 | 2_1:+10960180 | Msa0194690:CDS |
| GCCTGAACACCATGAGCCTC+AGG | 0.496343 | 2_1:-10959749 | None:intergenic |
| CAGTGTGGCATTCCCACCAA+TGG | 0.497818 | 2_1:-10959693 | None:intergenic |
| CATTCCACTGCCAAATCCTA+TGG | 0.498718 | 2_1:-10960005 | None:intergenic |
| CCGCGAGAAGCAGCGAGCAC+GGG | 0.500795 | 2_1:+10960903 | Msa0194690:CDS |
| TCGGTGTATGAGAAGAAAAT+GGG | 0.502362 | 2_1:+10959833 | Msa0194690:CDS |
| TGATCAGATCTACTATCATT+CGG | 0.502694 | 2_1:+10959814 | Msa0194690:CDS |
| GGCTCTGATGTGCATTGGTG+GGG | 0.503046 | 2_1:+10958579 | Msa0194690:CDS |
| TGATTCGATATATGAAGGTC+CGG | 0.503314 | 2_1:+10959160 | Msa0194690:CDS |
| ACCGCGAGAAGCAGCGAGCA+CGG | 0.506718 | 2_1:+10960902 | Msa0194690:CDS |
| GAAGAAAATGGGTTGGAGAG+TGG | 0.506742 | 2_1:+10959844 | Msa0194690:CDS |
| GGCCTGAGGAATGCATTAGC+TGG | 0.507546 | 2_1:-10960658 | None:intergenic |
| TGTCCTGATTCGATATATGA+AGG | 0.511057 | 2_1:+10959155 | Msa0194690:CDS |
| ACTTAAAGTCATATGGGCAA+TGG | 0.511086 | 2_1:+10960264 | Msa0194690:CDS |
| TGGTTCTGCAGAAGCAGAGC+AGG | 0.512384 | 2_1:+10960372 | Msa0194690:CDS |
| GCTGGTGGTCCTGAGGCTCA+TGG | 0.515891 | 2_1:+10959740 | Msa0194690:CDS |
| TGCTGATGCAAAAGTTCCAT+TGG | 0.516316 | 2_1:+10959505 | Msa0194690:CDS |
| AGAATCTTGGCAGGATTTGG+CGG | 0.516390 | 2_1:-10959563 | None:intergenic |
| TTTGATAATTTCACCAATGG+AGG | 0.517652 | 2_1:+10958618 | Msa0194690:CDS |
| GAATCTTGGCAGGATTTGGC+GGG | 0.518974 | 2_1:-10959562 | None:intergenic |
| AGAAGCAGCGAGCACGGGAT+CGG | 0.521776 | 2_1:+10960908 | Msa0194690:CDS |
| TCTTTATCACCAGCATCTAA+AGG | 0.522322 | 2_1:-10959464 | None:intergenic |
| AGGTCCGGATAGAGTTGGTT+TGG | 0.522338 | 2_1:+10959175 | Msa0194690:CDS |
| TTGATGTAAAGAATCTTGGC+AGG | 0.522540 | 2_1:-10959572 | None:intergenic |
| AACTCCACTTAAAGTCATAT+GGG | 0.525949 | 2_1:+10960258 | Msa0194690:CDS |
| GTGAGATGCAAAACAGAAAA+CGG | 0.526080 | 2_1:+10960148 | Msa0194690:CDS |
| CGAAGAACGAGGGAGGAGAT+GGG | 0.526235 | 2_1:+10958802 | Msa0194690:CDS |
| ATTGATGAAGAATGTTACTT+GGG | 0.527040 | 2_1:+10958701 | Msa0194690:CDS |
| TATGACTTTAAGTGGAGTTG+TGG | 0.527868 | 2_1:-10960254 | None:intergenic |
| CGCATCAGCTGAACAAGTAT+AGG | 0.528232 | 2_1:-10960349 | None:intergenic |
| TAGGAGTGATGGGGTTTCGT+TGG | 0.530705 | 2_1:+10959226 | Msa0194690:CDS |
| CAGTTATACATATGTGGGAT+GGG | 0.531034 | 2_1:+10960033 | Msa0194690:CDS |
| GAACGAGGGAGGAGATGGGA+AGG | 0.531311 | 2_1:+10958806 | Msa0194690:CDS |
| TATATTACTACAGATCCCAT+TGG | 0.531920 | 2_1:+10959677 | Msa0194690:CDS |
| TTTAGATGCTGGTGATAAAG+AGG | 0.532835 | 2_1:+10959466 | Msa0194690:CDS |
| CTTTGACAATGTCCAAAAGA+AGG | 0.532849 | 2_1:-10959933 | None:intergenic |
| TGTTGGACTCAAGAGATCAA+TGG | 0.533020 | 2_1:-10960977 | None:intergenic |
| CAGGTACCTGAAACATTTGA+AGG | 0.535559 | 2_1:+10960477 | Msa0194690:CDS |
| TGAAACAATGAATCCTCCAT+TGG | 0.538253 | 2_1:-10958631 | None:intergenic |
| AAGAGTGGTTATCTTGCCAT+AGG | 0.539558 | 2_1:+10959989 | Msa0194690:CDS |
| ATGATACAAGGTTGATATAC+GGG | 0.540824 | 2_1:+10959201 | Msa0194690:CDS |
| AGAAAACGGCATGATTACAT+TGG | 0.544819 | 2_1:+10960162 | Msa0194690:CDS |
| GGGTTAGGGTAATGCAAAGC+CGG | 0.546867 | 2_1:-10959542 | None:intergenic |
| AAATGACCAAAAGTCTCAAA+CGG | 0.548603 | 2_1:-10959401 | None:intergenic |
| TGGGTTGATGACAATGGTGT+TGG | 0.549825 | 2_1:+10960052 | Msa0194690:CDS |
| CAGAATGTGAATGATTGTAA+AGG | 0.550009 | 2_1:+10959440 | Msa0194690:CDS |
| ACAGTTATACATATGTGGGA+TGG | 0.551164 | 2_1:+10960032 | Msa0194690:CDS |
| CAAGGTTGATATACGGGCAT+AGG | 0.552235 | 2_1:+10959207 | Msa0194690:CDS |
| AGTGTGGCATTCCCACCAAT+GGG | 0.555344 | 2_1:-10959692 | None:intergenic |
| TTACCATCAACCTGACTCAA+AGG | 0.556389 | 2_1:-10959263 | None:intergenic |
| CTGGCTGCCAAGATACCTCC+AGG | 0.556842 | 2_1:-10960457 | None:intergenic |
| GAGAGTGGAAAGAGGAGTGC+CGG | 0.559547 | 2_1:+10959616 | Msa0194690:CDS |
| ATATACGGGCATAGGAGTGA+TGG | 0.560999 | 2_1:+10959215 | Msa0194690:CDS |
| AACCAGCTAATGCATTCCTC+AGG | 0.561640 | 2_1:+10960656 | Msa0194690:CDS |
| TATACGGGCATAGGAGTGAT+GGG | 0.562005 | 2_1:+10959216 | Msa0194690:CDS |
| TTGGTTCCATCTTGTAGTAG+GGG | 0.563124 | 2_1:+10960199 | Msa0194690:CDS |
| CTTGCCATAGGATTTGGCAG+TGG | 0.563630 | 2_1:+10960001 | Msa0194690:CDS |
| ATCAGCACCAATCATAAGCT+CGG | 0.565906 | 2_1:-10959021 | None:intergenic |
| ATGTTTACTTGCAATACTCA+GGG | 0.567475 | 2_1:+10960521 | Msa0194690:CDS |
| ATAAACAGTTATACATATGT+GGG | 0.568097 | 2_1:+10960028 | Msa0194690:CDS |
| GTGAAGATGGATCTGTCGAA+GGG | 0.568991 | 2_1:+10959129 | Msa0194690:CDS |
| AACACTGTTGTTATACATGT+CGG | 0.570128 | 2_1:-10959888 | None:intergenic |
| TGTGTGAAGAATAGTGAAGA+TGG | 0.570545 | 2_1:+10959116 | Msa0194690:CDS |
| ATAAAGCGCAACATCATGCC+CGG | 0.572365 | 2_1:-10959657 | None:intergenic |
| CTAACTGAGACAATTTATGC+TGG | 0.573223 | 2_1:+10959722 | Msa0194690:CDS |
| GGAAGCTCCTGTGTTGAGAG+TGG | 0.577718 | 2_1:+10959601 | Msa0194690:CDS |
| CGGGATCGGATATTTGGAAG+AGG | 0.577832 | 2_1:+10960922 | Msa0194690:CDS |
| CCTGTGTTGAGAGTGGAAAG+AGG | 0.578222 | 2_1:+10959608 | Msa0194690:CDS |
| GAAAATGGGTTGGAGAGTGG+AGG | 0.579894 | 2_1:+10959847 | Msa0194690:CDS |
| TGTAAAGGTCCTTTAGATGC+TGG | 0.582856 | 2_1:+10959455 | Msa0194690:CDS |
| AACTGGGGTTATGAATTACA+TGG | 0.584156 | 2_1:+10958965 | Msa0194690:CDS |
| TATCTGGCTCTGATGTGCAT+TGG | 0.584450 | 2_1:+10958574 | Msa0194690:CDS |
| ATTACTACAGATCCCATTGG+TGG | 0.584690 | 2_1:+10959680 | Msa0194690:CDS |
| TTGGTTTAGAAGGTGCAACT+GGG | 0.587129 | 2_1:+10958949 | Msa0194690:CDS |
| GTAATGAACATCTTACTGAA+AGG | 0.589810 | 2_1:+10960299 | Msa0194690:CDS |
| CCCGTGCTCGCTGCTTCTCG+CGG | 0.593232 | 2_1:-10960903 | None:intergenic |
| GTTGGGGAAGATGAGAGCTC+CGG | 0.594601 | 2_1:+10959334 | Msa0194690:CDS |
| TTTATGATGTTTCTTGCATG+GGG | 0.595008 | 2_1:+10960424 | Msa0194690:CDS |
| ATACTTGTTCAGCTGATGCG+TGG | 0.598725 | 2_1:+10960352 | Msa0194690:CDS |
| AGTGAAGATGGATCTGTCGA+AGG | 0.598930 | 2_1:+10959128 | Msa0194690:CDS |
| TTGGTTTGGTGAATGATACA+AGG | 0.599261 | 2_1:+10959189 | Msa0194690:CDS |
| TATGAAGGTCCGGATAGAGT+TGG | 0.600834 | 2_1:+10959170 | Msa0194690:CDS |
| TCAATGATGTTGTTACACTC+TGG | 0.602077 | 2_1:-10960229 | None:intergenic |
| AGGAGCCCAAACTAGTTCCG+TGG | 0.607300 | 2_1:-10959777 | None:intergenic |
| GGAAGACCGCCATGGTTCTG+AGG | 0.608095 | 2_1:-10959380 | None:intergenic |
| GCTTATGATTGGTGCTGATG+TGG | 0.613221 | 2_1:+10959025 | Msa0194690:CDS |
| AAATTGGGTGCTTGGCAATG+AGG | 0.614704 | 2_1:+10960945 | Msa0194690:CDS |
| AGAGTGGAGGTTGTGGACGG+GGG | 0.616025 | 2_1:+10959860 | Msa0194690:CDS |
| AATTTATGCTGGTGGTCCTG+AGG | 0.616178 | 2_1:+10959733 | Msa0194690:CDS |
| GGAGCCCAAACTAGTTCCGT+GGG | 0.616346 | 2_1:-10959776 | None:intergenic |
| AAACATCATAAAACCATGCA+CGG | 0.617454 | 2_1:-10960413 | None:intergenic |
| CTCAGTTAGATTCCTCAGTG+TGG | 0.617997 | 2_1:-10959708 | None:intergenic |
| TGTATGAGAAGAAAATGGGT+TGG | 0.619184 | 2_1:+10959837 | Msa0194690:CDS |
| ACTGAGACAATTTATGCTGG+TGG | 0.620789 | 2_1:+10959725 | Msa0194690:CDS |
| TTACTACAGATCCCATTGGT+GGG | 0.621508 | 2_1:+10959681 | Msa0194690:CDS |
| TGGTGTTCAGGCTAGTCCCA+CGG | 0.624788 | 2_1:+10959760 | Msa0194690:CDS |
| GGACCAGTGGAAACAACCAA+TGG | 0.625228 | 2_1:-10959521 | None:intergenic |
| AAACGTTCATGGACTCACTT+GGG | 0.625372 | 2_1:+10960828 | Msa0194690:CDS |
| TGGGGTATCTTGCTTCCTGG+AGG | 0.628780 | 2_1:+10960442 | Msa0194690:CDS |
| GTAATGCAAAGCCGGACCAG+TGG | 0.629267 | 2_1:-10959534 | None:intergenic |
| CCTCTTTCCACTCTCAACAC+AGG | 0.640164 | 2_1:-10959608 | None:intergenic |
| GCTTGTATAGAAAACGTGAC+CGG | 0.640499 | 2_1:-10959635 | None:intergenic |
| AGGTACCTGAAACATTTGAA+GGG | 0.647814 | 2_1:+10960478 | Msa0194690:CDS |
| TATGATTGGTGCTGATGTGG+CGG | 0.648845 | 2_1:+10959028 | Msa0194690:CDS |
| TGGTTTAGAAGGTGCAACTG+GGG | 0.650155 | 2_1:+10958950 | Msa0194690:CDS |
| TGACTGTTATTTGGGCGTTG+GGG | 0.650959 | 2_1:+10959318 | Msa0194690:CDS |
| CATTATCTTCCTCAGAACCA+TGG | 0.653127 | 2_1:+10959371 | Msa0194690:CDS |
| TCAATATCTATTGCTGCTCG+TGG | 0.653461 | 2_1:+10959959 | Msa0194690:CDS |
| GTGGGATGGGTTGATGACAA+TGG | 0.653502 | 2_1:+10960046 | Msa0194690:CDS |
| TCTCAAACGGAAGACCGCCA+TGG | 0.654243 | 2_1:-10959388 | None:intergenic |
| CTACTACAAGATGGAACCAA+GGG | 0.657528 | 2_1:-10960196 | None:intergenic |
| AATATCACCACGAAGAACGA+GGG | 0.661469 | 2_1:+10958792 | Msa0194690:CDS |
| AAATATCACCACGAAGAACG+AGG | 0.663007 | 2_1:+10958791 | Msa0194690:CDS |
| ATCACCACGAAGAACGAGGG+AGG | 0.667011 | 2_1:+10958795 | Msa0194690:CDS |
| CCTACTACAAGATGGAACCA+AGG | 0.677148 | 2_1:-10960197 | None:intergenic |
| TTCGAGCATACATCTTACAC+AGG | 0.677952 | 2_1:+10960111 | Msa0194690:CDS |
| TATCCCAAACAGAAAGAACA+GGG | 0.684383 | 2_1:-10958731 | None:intergenic |
| TGGTTCTGAGGAAGATAATG+CGG | 0.694284 | 2_1:-10959368 | None:intergenic |
| ATACGGGCATAGGAGTGATG+GGG | 0.707780 | 2_1:+10959217 | Msa0194690:CDS |
| TGAAGATGGATCTGTCGAAG+GGG | 0.709595 | 2_1:+10959130 | Msa0194690:CDS |
| ATGGTTCAACATCAACTCAG+AGG | 0.710473 | 2_1:+10958498 | Msa0194690:CDS |
| TATCTTCCTCAGAACCATGG+CGG | 0.760198 | 2_1:+10959374 | Msa0194690:CDS |
| TTGGTGGGAATGCCACACTG+AGG | 0.762184 | 2_1:+10959696 | Msa0194690:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTACAATTATCAAACATAGT+TGG | - | chr2_1:10958867-10958886 | None:intergenic | 20.0% |
| !!! | AACTATGTTTGATAATTGTA+AGG | + | chr2_1:10958866-10958885 | Msa0194690:CDS | 20.0% |
| !! | ATAAAAAAATCATCCACAAA+TGG | - | chr2_1:10959080-10959099 | None:intergenic | 20.0% |
| !! | ATAAACAGTTATACATATGT+GGG | + | chr2_1:10960028-10960047 | Msa0194690:CDS | 20.0% |
| !! | AACGTTTAAAAGGATAATTT+GGG | + | chr2_1:10960708-10960727 | Msa0194690:CDS | 20.0% |
| ! | ATGTTGAACCATAATGAAAT+CGG | - | chr2_1:10958490-10958509 | None:intergenic | 25.0% |
| !!! | AATCATCGATGATTTTGAAA+TGG | - | chr2_1:10958524-10958543 | None:intergenic | 25.0% |
| ! | TCTCAATTTGATATGTTATC+TGG | + | chr2_1:10958558-10958577 | Msa0194690:CDS | 25.0% |
| !!! | GATTTTGATAATTTCACCAA+TGG | + | chr2_1:10958615-10958634 | Msa0194690:CDS | 25.0% |
| ! | TTGAACAACGAATGTTAAAT+TGG | - | chr2_1:10958682-10958701 | None:intergenic | 25.0% |
| ! | AATTGATGAAGAATGTTACT+TGG | + | chr2_1:10958700-10958719 | Msa0194690:CDS | 25.0% |
| !! | ATTGATGAAGAATGTTACTT+GGG | + | chr2_1:10958701-10958720 | Msa0194690:CDS | 25.0% |
| !!! | TAATTGTAAGGTTTTGTCTA+AGG | + | chr2_1:10958878-10958897 | Msa0194690:CDS | 25.0% |
| !!! | AATGATACAAGGTTGATATA+CGG | + | chr2_1:10959200-10959219 | Msa0194690:CDS | 25.0% |
| ! | TTTGTTGATGTAAAGAATCT+TGG | - | chr2_1:10959579-10959598 | None:intergenic | 25.0% |
| ! | GATTCTTTACATCAACAAAA+AGG | + | chr2_1:10959580-10959599 | Msa0194690:CDS | 25.0% |
| ! | GATAAACAGTTATACATATG+TGG | + | chr2_1:10960027-10960046 | Msa0194690:CDS | 25.0% |
| !! | TTTTATGATGTTTCTTGCAT+GGG | + | chr2_1:10960423-10960442 | Msa0194690:CDS | 25.0% |
| !! | CAAATTATCCTTTTAAACGT+TGG | - | chr2_1:10960709-10960728 | None:intergenic | 25.0% |
| ! | CAACGTTTAAAAGGATAATT+TGG | + | chr2_1:10960707-10960726 | Msa0194690:CDS | 25.0% |
| ! | GAATATTTGCACATAATTGT+TGG | + | chr2_1:10960730-10960749 | Msa0194690:CDS | 25.0% |
| !!! | ATGATAATTTGGTTCTTAGT+AGG | + | chr2_1:10960853-10960872 | Msa0194690:CDS | 25.0% |
| !! | GAATCTTTATTTGTTGAAAG+TGG | - | chr2_1:10961006-10961025 | None:intergenic | 25.0% |
| ! | TTCAACAAATAAAGATTCAC+AGG | + | chr2_1:10961008-10961027 | Msa0194690:CDS | 25.0% |
| ! | TTCCTATCCTTGTTCTTTTT+CGG | + | chr2_1:10958408-10958427 | Msa0194690:CDS | 30.0% |
| TTTCGAATCCGATTTCATTA+TGG | + | chr2_1:10958479-10958498 | Msa0194690:CDS | 30.0% | |
| ! | TTTGATAATTTCACCAATGG+AGG | + | chr2_1:10958618-10958637 | Msa0194690:CDS | 30.0% |
| ! | ATTCCAACTGCATCAAATTT+TGG | + | chr2_1:10958753-10958772 | Msa0194690:CDS | 30.0% |
| !! | AGGTTTTGTCTAAGGATTTT+AGG | + | chr2_1:10958886-10958905 | Msa0194690:CDS | 30.0% |
| !! | GGTTTTGTCTAAGGATTTTA+GGG | + | chr2_1:10958887-10958906 | Msa0194690:CDS | 30.0% |
| TTGGAGTTTGAATTTGAAAG+AGG | + | chr2_1:10958914-10958933 | Msa0194690:CDS | 30.0% | |
| AAAGAGGATTCAATTGAGAT+TGG | + | chr2_1:10958930-10958949 | Msa0194690:CDS | 30.0% | |
| !! | TCAATTGAGATTGGTTTAGA+AGG | + | chr2_1:10958939-10958958 | Msa0194690:CDS | 30.0% |
| ! | GTTATGAATTACATGGCTTT+TGG | + | chr2_1:10958972-10958991 | Msa0194690:CDS | 30.0% |
| !! | ATGATACAAGGTTGATATAC+GGG | + | chr2_1:10959201-10959220 | Msa0194690:CDS | 30.0% |
| TGATCAATCTGTTGTTCAAT+CGG | + | chr2_1:10959289-10959308 | Msa0194690:CDS | 30.0% | |
| AAATGACCAAAAGTCTCAAA+CGG | - | chr2_1:10959404-10959423 | None:intergenic | 30.0% | |
| CAGAATGTGAATGATTGTAA+AGG | + | chr2_1:10959440-10959459 | Msa0194690:CDS | 30.0% | |
| TATATTACTACAGATCCCAT+TGG | + | chr2_1:10959677-10959696 | Msa0194690:CDS | 30.0% | |
| TGATCAGATCTACTATCATT+CGG | + | chr2_1:10959814-10959833 | Msa0194690:CDS | 30.0% | |
| AACACTGTTGTTATACATGT+CGG | - | chr2_1:10959891-10959910 | None:intergenic | 30.0% | |
| AACTCCACTTAAAGTCATAT+GGG | + | chr2_1:10960258-10960277 | Msa0194690:CDS | 30.0% | |
| GTAATGAACATCTTACTGAA+AGG | + | chr2_1:10960299-10960318 | Msa0194690:CDS | 30.0% | |
| AAACATCATAAAACCATGCA+CGG | - | chr2_1:10960416-10960435 | None:intergenic | 30.0% | |
| ! | GTTTTATGATGTTTCTTGCA+TGG | + | chr2_1:10960422-10960441 | Msa0194690:CDS | 30.0% |
| TTTATGATGTTTCTTGCATG+GGG | + | chr2_1:10960424-10960443 | Msa0194690:CDS | 30.0% | |
| AACATTTGAAGGGTGATAAT+TGG | + | chr2_1:10960488-10960507 | Msa0194690:CDS | 30.0% | |
| ATGTTTACTTGCAATACTCA+GGG | + | chr2_1:10960521-10960540 | Msa0194690:CDS | 30.0% | |
| ! | TTTTCTTGCACTTCTTTTTG+CGG | + | chr2_1:10960555-10960574 | Msa0194690:CDS | 30.0% |
| AGCTCAACACATGTTAAATT+TGG | + | chr2_1:10960604-10960623 | Msa0194690:CDS | 30.0% | |
| GATATTTGGAAGAGGAAATT+GGG | + | chr2_1:10960930-10960949 | Msa0194690:CDS | 30.0% | |
| TTTGTTGAAAGTGGAATTGT+TGG | - | chr2_1:10960997-10961016 | None:intergenic | 30.0% | |
| ATCCGAAAAAGAACAAGGAT+AGG | - | chr2_1:10958413-10958432 | None:intergenic | 35.0% | |
| TGCATATCCGAAAAAGAACA+AGG | - | chr2_1:10958418-10958437 | None:intergenic | 35.0% | |
| AATCGATGAAGGAACTGTTT+CGG | - | chr2_1:10958461-10958480 | None:intergenic | 35.0% | |
| ! | TCATCGATGATTGCTCTTTT+AGG | + | chr2_1:10958532-10958551 | Msa0194690:CDS | 35.0% |
| ! | CATCGATGATTGCTCTTTTA+GGG | + | chr2_1:10958533-10958552 | Msa0194690:CDS | 35.0% |
| TGAAACAATGAATCCTCCAT+TGG | - | chr2_1:10958634-10958653 | None:intergenic | 35.0% | |
| TATCCCAAACAGAAAGAACA+GGG | - | chr2_1:10958734-10958753 | None:intergenic | 35.0% | |
| ATATCCCAAACAGAAAGAAC+AGG | - | chr2_1:10958735-10958754 | None:intergenic | 35.0% | |
| TGACCAAAATTTGATGCAGT+TGG | - | chr2_1:10958759-10958778 | None:intergenic | 35.0% | |
| AACTGGGGTTATGAATTACA+TGG | + | chr2_1:10958965-10958984 | Msa0194690:CDS | 35.0% | |
| ! | TGAATTACATGGCTTTTGGT+TGG | + | chr2_1:10958976-10958995 | Msa0194690:CDS | 35.0% |
| !! | GAATTACATGGCTTTTGGTT+GGG | + | chr2_1:10958977-10958996 | Msa0194690:CDS | 35.0% |
| TGTGTGAAGAATAGTGAAGA+TGG | + | chr2_1:10959116-10959135 | Msa0194690:CDS | 35.0% | |
| ! | TGTCCTGATTCGATATATGA+AGG | + | chr2_1:10959155-10959174 | Msa0194690:CDS | 35.0% |
| TGATTCGATATATGAAGGTC+CGG | + | chr2_1:10959160-10959179 | Msa0194690:CDS | 35.0% | |
| !! | TTGGTTTGGTGAATGATACA+AGG | + | chr2_1:10959189-10959208 | Msa0194690:CDS | 35.0% |
| ATATAAGAGACCTTTGAGTC+AGG | + | chr2_1:10959253-10959272 | Msa0194690:CDS | 35.0% | |
| ! | GGCTAACATGACTGTTATTT+GGG | + | chr2_1:10959310-10959329 | Msa0194690:CDS | 35.0% |
| TAATGCGGTAAAACAGTATC+CGG | - | chr2_1:10959356-10959375 | None:intergenic | 35.0% | |
| !! | GTTTGAGACTTTTGGTCATT+TGG | + | chr2_1:10959403-10959422 | Msa0194690:CDS | 35.0% |
| TCTTTATCACCAGCATCTAA+AGG | - | chr2_1:10959467-10959486 | None:intergenic | 35.0% | |
| TTTAGATGCTGGTGATAAAG+AGG | + | chr2_1:10959466-10959485 | Msa0194690:CDS | 35.0% | |
| TAAAGAATCTTGGCAGGATT+TGG | - | chr2_1:10959569-10959588 | None:intergenic | 35.0% | |
| TTGATGTAAAGAATCTTGGC+AGG | - | chr2_1:10959575-10959594 | None:intergenic | 35.0% | |
| CTAACTGAGACAATTTATGC+TGG | + | chr2_1:10959722-10959741 | Msa0194690:CDS | 35.0% | |
| GAATGATAGTAGATCTGATC+AGG | - | chr2_1:10959815-10959834 | None:intergenic | 35.0% | |
| ! | TTCGGTGTATGAGAAGAAAA+TGG | + | chr2_1:10959832-10959851 | Msa0194690:CDS | 35.0% |
| TCGGTGTATGAGAAGAAAAT+GGG | + | chr2_1:10959833-10959852 | Msa0194690:CDS | 35.0% | |
| TGTATGAGAAGAAAATGGGT+TGG | + | chr2_1:10959837-10959856 | Msa0194690:CDS | 35.0% | |
| ! | GTATAACAACAGTGTTGTTC+TGG | + | chr2_1:10959895-10959914 | Msa0194690:CDS | 35.0% |
| ! | ATCAACAGGTTACCTTCTTT+TGG | + | chr2_1:10959921-10959940 | Msa0194690:CDS | 35.0% |
| CTTTGACAATGTCCAAAAGA+AGG | - | chr2_1:10959936-10959955 | None:intergenic | 35.0% | |
| ! | CTTCTTTTGGACATTGTCAA+AGG | + | chr2_1:10959934-10959953 | Msa0194690:CDS | 35.0% |
| ACAGTTATACATATGTGGGA+TGG | + | chr2_1:10960032-10960051 | Msa0194690:CDS | 35.0% | |
| CAGTTATACATATGTGGGAT+GGG | + | chr2_1:10960033-10960052 | Msa0194690:CDS | 35.0% | |
| GTTAACACTTACTGGATTGA+TGG | + | chr2_1:10960079-10960098 | Msa0194690:CDS | 35.0% | |
| GTGAGATGCAAAACAGAAAA+CGG | + | chr2_1:10960148-10960167 | Msa0194690:CDS | 35.0% | |
| AGAAAACGGCATGATTACAT+TGG | + | chr2_1:10960162-10960181 | Msa0194690:CDS | 35.0% | |
| TCAATGATGTTGTTACACTC+TGG | - | chr2_1:10960232-10960251 | None:intergenic | 35.0% | |
| ATGACTTTAAGTGGAGTTGT+GGG | - | chr2_1:10960256-10960275 | None:intergenic | 35.0% | |
| TATGACTTTAAGTGGAGTTG+TGG | - | chr2_1:10960257-10960276 | None:intergenic | 35.0% | |
| CAACTCCACTTAAAGTCATA+TGG | + | chr2_1:10960257-10960276 | Msa0194690:CDS | 35.0% | |
| ATTGCCCATATGACTTTAAG+TGG | - | chr2_1:10960265-10960284 | None:intergenic | 35.0% | |
| ACTTAAAGTCATATGGGCAA+TGG | + | chr2_1:10960264-10960283 | Msa0194690:CDS | 35.0% | |
| CTTAAAGTCATATGGGCAAT+GGG | + | chr2_1:10960265-10960284 | Msa0194690:CDS | 35.0% | |
| AGGTACCTGAAACATTTGAA+GGG | + | chr2_1:10960478-10960497 | Msa0194690:CDS | 35.0% | |
| TATCACCCTTCAAATGTTTC+AGG | - | chr2_1:10960486-10960505 | None:intergenic | 35.0% | |
| CATGTTTACTTGCAATACTC+AGG | + | chr2_1:10960520-10960539 | Msa0194690:CDS | 35.0% | |
| ! | TGGAATTGCTGCAATAGTTT+TGG | + | chr2_1:10960624-10960643 | Msa0194690:CDS | 35.0% |
| !! | TTTTACTGGCATGAAGCATT+TGG | + | chr2_1:10960786-10960805 | Msa0194690:CDS | 35.0% |
| ! | TTTACTGGCATGAAGCATTT+GGG | + | chr2_1:10960787-10960806 | Msa0194690:CDS | 35.0% |
| !! | TATGCTTTGGAAAACGTTCA+TGG | + | chr2_1:10960817-10960836 | Msa0194690:CDS | 35.0% |
| TCACTTGGGCAATGATAATT+TGG | + | chr2_1:10960842-10960861 | Msa0194690:CDS | 35.0% | |
| GGATATTTGGAAGAGGAAAT+TGG | + | chr2_1:10960929-10960948 | Msa0194690:CDS | 35.0% | |
| TCCAGTTAGAACCTTTAAAC+AGG | + | chr2_1:10961049-10961068 | Msa0194690:CDS | 35.0% | |
| ! | ACCTGTTTAAAGGTTCTAAC+TGG | - | chr2_1:10961053-10961072 | None:intergenic | 35.0% |
| ATCGATGAAGGAACTGTTTC+GGG | - | chr2_1:10958460-10958479 | None:intergenic | 40.0% | |
| ATCGGATTCGAAATCGATGA+AGG | - | chr2_1:10958472-10958491 | None:intergenic | 40.0% | |
| ATGGTTCAACATCAACTCAG+AGG | + | chr2_1:10958498-10958517 | Msa0194690:CDS | 40.0% | |
| TGATCCCTGTTCTTTCTGTT+TGG | + | chr2_1:10958727-10958746 | Msa0194690:CDS | 40.0% | |
| GATCCCTGTTCTTTCTGTTT+GGG | + | chr2_1:10958728-10958747 | Msa0194690:CDS | 40.0% | |
| AAATATCACCACGAAGAACG+AGG | + | chr2_1:10958791-10958810 | Msa0194690:CDS | 40.0% | |
| AATATCACCACGAAGAACGA+GGG | + | chr2_1:10958792-10958811 | Msa0194690:CDS | 40.0% | |
| GAAGGAGAAGGAGAAGAATA+AGG | + | chr2_1:10958824-10958843 | Msa0194690:CDS | 40.0% | |
| !!! | CTAAGGATTTTAGGGTACGT+TGG | + | chr2_1:10958895-10958914 | Msa0194690:CDS | 40.0% |
| ! | ATTGGTTTAGAAGGTGCAAC+TGG | + | chr2_1:10958948-10958967 | Msa0194690:CDS | 40.0% |
| ! | TTGGTTTAGAAGGTGCAACT+GGG | + | chr2_1:10958949-10958968 | Msa0194690:CDS | 40.0% |
| ! | ACTGATTCCGAGCTTATGAT+TGG | + | chr2_1:10959014-10959033 | Msa0194690:CDS | 40.0% |
| ATCAGCACCAATCATAAGCT+CGG | - | chr2_1:10959024-10959043 | None:intergenic | 40.0% | |
| !!! | GTTACGGGTTTTAAGGAAGA+CGG | + | chr2_1:10959050-10959069 | Msa0194690:CDS | 40.0% |
| !!! | TTACGGGTTTTAAGGAAGAC+GGG | + | chr2_1:10959051-10959070 | Msa0194690:CDS | 40.0% |
| GGACCTTCATATATCGAATC+AGG | - | chr2_1:10959161-10959180 | None:intergenic | 40.0% | |
| TTCACCAAACCAACTCTATC+CGG | - | chr2_1:10959182-10959201 | None:intergenic | 40.0% | |
| TTACCATCAACCTGACTCAA+AGG | - | chr2_1:10959266-10959285 | None:intergenic | 40.0% | |
| CGGCTAACATGACTGTTATT+TGG | + | chr2_1:10959309-10959328 | Msa0194690:CDS | 40.0% | |
| ! | ATGACTGTTATTTGGGCGTT+GGG | + | chr2_1:10959317-10959336 | Msa0194690:CDS | 40.0% |
| !! | TGGTTCTGAGGAAGATAATG+CGG | - | chr2_1:10959371-10959390 | None:intergenic | 40.0% |
| CATTATCTTCCTCAGAACCA+TGG | + | chr2_1:10959371-10959390 | Msa0194690:CDS | 40.0% | |
| TGTAAAGGTCCTTTAGATGC+TGG | + | chr2_1:10959455-10959474 | Msa0194690:CDS | 40.0% | |
| TGCTGATGCAAAAGTTCCAT+TGG | + | chr2_1:10959505-10959524 | Msa0194690:CDS | 40.0% | |
| GCTTGTATAGAAAACGTGAC+CGG | - | chr2_1:10959638-10959657 | None:intergenic | 40.0% | |
| ! | GTCACGTTTTCTATACAAGC+CGG | + | chr2_1:10959638-10959657 | Msa0194690:CDS | 40.0% |
| ! | TCACGTTTTCTATACAAGCC+GGG | + | chr2_1:10959639-10959658 | Msa0194690:CDS | 40.0% |
| ATTACTACAGATCCCATTGG+TGG | + | chr2_1:10959680-10959699 | Msa0194690:CDS | 40.0% | |
| TTACTACAGATCCCATTGGT+GGG | + | chr2_1:10959681-10959700 | Msa0194690:CDS | 40.0% | |
| ACTGAGACAATTTATGCTGG+TGG | + | chr2_1:10959725-10959744 | Msa0194690:CDS | 40.0% | |
| ! | TGTTGTTCTGGATGATCAAC+AGG | + | chr2_1:10959907-10959926 | Msa0194690:CDS | 40.0% |
| TCAATATCTATTGCTGCTCG+TGG | + | chr2_1:10959959-10959978 | Msa0194690:CDS | 40.0% | |
| AAGAGTGGTTATCTTGCCAT+AGG | + | chr2_1:10959989-10960008 | Msa0194690:CDS | 40.0% | |
| GGTTATCTTGCCATAGGATT+TGG | + | chr2_1:10959995-10960014 | Msa0194690:CDS | 40.0% | |
| TTGGTCGTGTTAACACTTAC+TGG | + | chr2_1:10960071-10960090 | Msa0194690:CDS | 40.0% | |
| TTCGAGCATACATCTTACAC+AGG | + | chr2_1:10960111-10960130 | Msa0194690:CDS | 40.0% | |
| ATTGGAATTTACACGTCCCT+TGG | + | chr2_1:10960180-10960199 | Msa0194690:CDS | 40.0% | |
| CTACTACAAGATGGAACCAA+GGG | - | chr2_1:10960199-10960218 | None:intergenic | 40.0% | |
| CTTGGTTCCATCTTGTAGTA+GGG | + | chr2_1:10960198-10960217 | Msa0194690:CDS | 40.0% | |
| TTGGTTCCATCTTGTAGTAG+GGG | + | chr2_1:10960199-10960218 | Msa0194690:CDS | 40.0% | |
| ! | CTTCAAATGTTTCAGGTACC+TGG | - | chr2_1:10960479-10960498 | None:intergenic | 40.0% |
| CAGGTACCTGAAACATTTGA+AGG | + | chr2_1:10960477-10960496 | Msa0194690:CDS | 40.0% | |
| TGCTGCAATGCCAACAAAAA+TGG | - | chr2_1:10960764-10960783 | None:intergenic | 40.0% | |
| TTTGGGAGACAGATATGCTT+TGG | + | chr2_1:10960804-10960823 | Msa0194690:CDS | 40.0% | |
| AAAACGTTCATGGACTCACT+TGG | + | chr2_1:10960827-10960846 | Msa0194690:CDS | 40.0% | |
| AAACGTTCATGGACTCACTT+GGG | + | chr2_1:10960828-10960847 | Msa0194690:CDS | 40.0% | |
| TGTTGGACTCAAGAGATCAA+TGG | - | chr2_1:10960980-10960999 | None:intergenic | 40.0% | |
| ! | GAACTGTTTCGGGTGCATTT+CGG | - | chr2_1:10958450-10958469 | None:intergenic | 45.0% |
| !! | TATCTGGCTCTGATGTGCAT+TGG | + | chr2_1:10958574-10958593 | Msa0194690:CDS | 45.0% |
| ! | TGGTTTAGAAGGTGCAACTG+GGG | + | chr2_1:10958950-10958969 | Msa0194690:CDS | 45.0% |
| GCTCGGAATCAGTAGCATTA+GGG | - | chr2_1:10959007-10959026 | None:intergenic | 45.0% | |
| AGCTCGGAATCAGTAGCATT+AGG | - | chr2_1:10959008-10959027 | None:intergenic | 45.0% | |
| !! | GCTTATGATTGGTGCTGATG+TGG | + | chr2_1:10959025-10959044 | Msa0194690:CDS | 45.0% |
| !! | TATGATTGGTGCTGATGTGG+CGG | + | chr2_1:10959028-10959047 | Msa0194690:CDS | 45.0% |
| AGTGAAGATGGATCTGTCGA+AGG | + | chr2_1:10959128-10959147 | Msa0194690:CDS | 45.0% | |
| GTGAAGATGGATCTGTCGAA+GGG | + | chr2_1:10959129-10959148 | Msa0194690:CDS | 45.0% | |
| TGAAGATGGATCTGTCGAAG+GGG | + | chr2_1:10959130-10959149 | Msa0194690:CDS | 45.0% | |
| TATGAAGGTCCGGATAGAGT+TGG | + | chr2_1:10959170-10959189 | Msa0194690:CDS | 45.0% | |
| !! | CAAGGTTGATATACGGGCAT+AGG | + | chr2_1:10959207-10959226 | Msa0194690:CDS | 45.0% |
| ATATACGGGCATAGGAGTGA+TGG | + | chr2_1:10959215-10959234 | Msa0194690:CDS | 45.0% | |
| TATACGGGCATAGGAGTGAT+GGG | + | chr2_1:10959216-10959235 | Msa0194690:CDS | 45.0% | |
| !! | AGACCTTTGAGTCAGGTTGA+TGG | + | chr2_1:10959260-10959279 | Msa0194690:CDS | 45.0% |
| ! | CATGACTGTTATTTGGGCGT+TGG | + | chr2_1:10959316-10959335 | Msa0194690:CDS | 45.0% |
| ! | TGACTGTTATTTGGGCGTTG+GGG | + | chr2_1:10959318-10959337 | Msa0194690:CDS | 45.0% |
| TATCTTCCTCAGAACCATGG+CGG | + | chr2_1:10959374-10959393 | Msa0194690:CDS | 45.0% | |
| !! | GGTCTTCCGTTTGAGACTTT+TGG | + | chr2_1:10959395-10959414 | Msa0194690:CDS | 45.0% |
| ! | GTTCCATTGGTTGTTTCCAC+TGG | + | chr2_1:10959518-10959537 | Msa0194690:CDS | 45.0% |
| ! | ATTGGTTGTTTCCACTGGTC+CGG | + | chr2_1:10959523-10959542 | Msa0194690:CDS | 45.0% |
| AGAATCTTGGCAGGATTTGG+CGG | - | chr2_1:10959566-10959585 | None:intergenic | 45.0% | |
| ATAAAGCGCAACATCATGCC+CGG | - | chr2_1:10959660-10959679 | None:intergenic | 45.0% | |
| CTCAGTTAGATTCCTCAGTG+TGG | - | chr2_1:10959711-10959730 | None:intergenic | 45.0% | |
| AATTTATGCTGGTGGTCCTG+AGG | + | chr2_1:10959733-10959752 | Msa0194690:CDS | 45.0% | |
| ! | TAGTCCCACGGAACTAGTTT+GGG | + | chr2_1:10959772-10959791 | Msa0194690:CDS | 45.0% |
| ! | AACTAGTTTGGGCTCCTGAT+AGG | + | chr2_1:10959783-10959802 | Msa0194690:CDS | 45.0% |
| !! | TGATCAGGAGTGTTCCTATC+AGG | - | chr2_1:10959800-10959819 | None:intergenic | 45.0% |
| !! | GAAGAAAATGGGTTGGAGAG+TGG | + | chr2_1:10959844-10959863 | Msa0194690:CDS | 45.0% |
| CATTCCACTGCCAAATCCTA+TGG | - | chr2_1:10960008-10960027 | None:intergenic | 45.0% | |
| !! | TGGGTTGATGACAATGGTGT+TGG | + | chr2_1:10960052-10960071 | Msa0194690:CDS | 45.0% |
| ! | CACTTACTGGATTGATGGAC+AGG | + | chr2_1:10960084-10960103 | Msa0194690:CDS | 45.0% |
| CCTACTACAAGATGGAACCA+AGG | - | chr2_1:10960200-10960219 | None:intergenic | 45.0% | |
| CCTTGGTTCCATCTTGTAGT+AGG | + | chr2_1:10960197-10960216 | Msa0194690:CDS | 45.0% | |
| ! | CTTTTGCCCCTACTACAAGA+TGG | - | chr2_1:10960208-10960227 | None:intergenic | 45.0% |
| CATCTTGTAGTAGGGGCAAA+AGG | + | chr2_1:10960206-10960225 | Msa0194690:CDS | 45.0% | |
| TATGGGCAATGGGTAGTAGA+TGG | + | chr2_1:10960275-10960294 | Msa0194690:CDS | 45.0% | |
| CGCATCAGCTGAACAAGTAT+AGG | - | chr2_1:10960352-10960371 | None:intergenic | 45.0% | |
| ATACTTGTTCAGCTGATGCG+TGG | + | chr2_1:10960352-10960371 | Msa0194690:CDS | 45.0% | |
| !! | GCAGGATTTGCTTCCAGTTT+TGG | + | chr2_1:10960390-10960409 | Msa0194690:CDS | 45.0% |
| AACCAGCTAATGCATTCCTC+AGG | + | chr2_1:10960656-10960675 | Msa0194690:CDS | 45.0% | |
| !!! | TCCCCATTTGATGGTTTTGG+GGG | - | chr2_1:10960682-10960701 | None:intergenic | 45.0% |
| !! | CTCCCCATTTGATGGTTTTG+GGG | - | chr2_1:10960683-10960702 | None:intergenic | 45.0% |
| !! | GCTCCCCATTTGATGGTTTT+GGG | - | chr2_1:10960684-10960703 | None:intergenic | 45.0% |
| !! | TGCTCCCCATTTGATGGTTT+TGG | - | chr2_1:10960685-10960704 | None:intergenic | 45.0% |
| !!! | GGCAGATCTGCCATTTTTGT+TGG | + | chr2_1:10960751-10960770 | Msa0194690:CDS | 45.0% |
| !! | GGCATTGCAGCACTTTTTAC+TGG | + | chr2_1:10960772-10960791 | Msa0194690:CDS | 45.0% |
| AAATTGGGTGCTTGGCAATG+AGG | + | chr2_1:10960945-10960964 | Msa0194690:CDS | 45.0% | |
| TTCACAGGCTTCTGCAAGAA+TGG | + | chr2_1:10961023-10961042 | Msa0194690:CDS | 45.0% | |
| !! | TGGCTCTGATGTGCATTGGT+GGG | + | chr2_1:10958578-10958597 | Msa0194690:CDS | 50.0% |
| ! | TGTGGCGGTTACGGGTTTTA+AGG | + | chr2_1:10959043-10959062 | Msa0194690:CDS | 50.0% |
| ! | AGGTCCGGATAGAGTTGGTT+TGG | + | chr2_1:10959175-10959194 | Msa0194690:CDS | 50.0% |
| ATACGGGCATAGGAGTGATG+GGG | + | chr2_1:10959217-10959236 | Msa0194690:CDS | 50.0% | |
| ! | TAGGAGTGATGGGGTTTCGT+TGG | + | chr2_1:10959226-10959245 | Msa0194690:CDS | 50.0% |
| GGACCAGTGGAAACAACCAA+TGG | - | chr2_1:10959524-10959543 | None:intergenic | 50.0% | |
| GGGTTAGGGTAATGCAAAGC+CGG | - | chr2_1:10959545-10959564 | None:intergenic | 50.0% | |
| GAATCTTGGCAGGATTTGGC+GGG | - | chr2_1:10959565-10959584 | None:intergenic | 50.0% | |
| CCTCTTTCCACTCTCAACAC+AGG | - | chr2_1:10959611-10959630 | None:intergenic | 50.0% | |
| CCTGTGTTGAGAGTGGAAAG+AGG | + | chr2_1:10959608-10959627 | Msa0194690:CDS | 50.0% | |
| AGTGTGGCATTCCCACCAAT+GGG | - | chr2_1:10959695-10959714 | None:intergenic | 50.0% | |
| CTAGTCCCACGGAACTAGTT+TGG | + | chr2_1:10959771-10959790 | Msa0194690:CDS | 50.0% | |
| !! | GAAAATGGGTTGGAGAGTGG+AGG | + | chr2_1:10959847-10959866 | Msa0194690:CDS | 50.0% |
| GCTCGTGGTGAGAAAAAGAG+TGG | + | chr2_1:10959974-10959993 | Msa0194690:CDS | 50.0% | |
| CTTGCCATAGGATTTGGCAG+TGG | + | chr2_1:10960001-10960020 | Msa0194690:CDS | 50.0% | |
| !! | GTGGGATGGGTTGATGACAA+TGG | + | chr2_1:10960046-10960065 | Msa0194690:CDS | 50.0% |
| AAACCATGCACGGCCAAAAC+TGG | - | chr2_1:10960406-10960425 | None:intergenic | 50.0% | |
| !! | CTTGCTTCCTGGAGGTATCT+TGG | + | chr2_1:10960450-10960469 | Msa0194690:CDS | 50.0% |
| AGGCCCCCAAAACCATCAAA+TGG | + | chr2_1:10960676-10960695 | Msa0194690:CDS | 50.0% | |
| GGCCCCCAAAACCATCAAAT+GGG | + | chr2_1:10960677-10960696 | Msa0194690:CDS | 50.0% | |
| GCCCCCAAAACCATCAAATG+GGG | + | chr2_1:10960678-10960697 | Msa0194690:CDS | 50.0% | |
| GGGAGCAGCCAACGTTTAAA+AGG | + | chr2_1:10960698-10960717 | Msa0194690:CDS | 50.0% | |
| CGGGATCGGATATTTGGAAG+AGG | + | chr2_1:10960922-10960941 | Msa0194690:CDS | 50.0% | |
| GGAAGAGGAAATTGGGTGCT+TGG | + | chr2_1:10960937-10960956 | Msa0194690:CDS | 50.0% | |
| ! | TTTCGGGTGCATTTCGGAGC+AGG | - | chr2_1:10958444-10958463 | None:intergenic | 55.0% |
| !! | CTGGCTCTGATGTGCATTGG+TGG | + | chr2_1:10958577-10958596 | Msa0194690:CDS | 55.0% |
| ! | GGCTCTGATGTGCATTGGTG+GGG | + | chr2_1:10958579-10958598 | Msa0194690:CDS | 55.0% |
| ATCACCACGAAGAACGAGGG+AGG | + | chr2_1:10958795-10958814 | Msa0194690:CDS | 55.0% | |
| ATCTCCTCCCTCGTTCTTCG+TGG | - | chr2_1:10958802-10958821 | None:intergenic | 55.0% | |
| ACGAAGAACGAGGGAGGAGA+TGG | + | chr2_1:10958801-10958820 | Msa0194690:CDS | 55.0% | |
| CGAAGAACGAGGGAGGAGAT+GGG | + | chr2_1:10958802-10958821 | Msa0194690:CDS | 55.0% | |
| !! | TGGTGCTGATGTGGCGGTTA+CGG | + | chr2_1:10959034-10959053 | Msa0194690:CDS | 55.0% |
| !! | GGAAGACGGGTTGCCATTTG+TGG | + | chr2_1:10959064-10959083 | Msa0194690:CDS | 55.0% |
| GTTGGGGAAGATGAGAGCTC+CGG | + | chr2_1:10959334-10959353 | Msa0194690:CDS | 55.0% | |
| TCTCAAACGGAAGACCGCCA+TGG | - | chr2_1:10959391-10959410 | None:intergenic | 55.0% | |
| GTAATGCAAAGCCGGACCAG+TGG | - | chr2_1:10959537-10959556 | None:intergenic | 55.0% | |
| !! | TGGCAGGATTTGGCGGGTTA+GGG | - | chr2_1:10959559-10959578 | None:intergenic | 55.0% |
| !! | TTGGCAGGATTTGGCGGGTT+AGG | - | chr2_1:10959560-10959579 | None:intergenic | 55.0% |
| GGAAGCTCCTGTGTTGAGAG+TGG | + | chr2_1:10959601-10959620 | Msa0194690:CDS | 55.0% | |
| ! | GAGAGTGGAAAGAGGAGTGC+CGG | + | chr2_1:10959616-10959635 | Msa0194690:CDS | 55.0% |
| CAGTGTGGCATTCCCACCAA+TGG | - | chr2_1:10959696-10959715 | None:intergenic | 55.0% | |
| TTGGTGGGAATGCCACACTG+AGG | + | chr2_1:10959696-10959715 | Msa0194690:CDS | 55.0% | |
| TCCTGAGGCTCATGGTGTTC+AGG | + | chr2_1:10959748-10959767 | Msa0194690:CDS | 55.0% | |
| ! | TGGTGTTCAGGCTAGTCCCA+CGG | + | chr2_1:10959760-10959779 | Msa0194690:CDS | 55.0% |
| GGAGCCCAAACTAGTTCCGT+GGG | - | chr2_1:10959779-10959798 | None:intergenic | 55.0% | |
| AGGAGCCCAAACTAGTTCCG+TGG | - | chr2_1:10959780-10959799 | None:intergenic | 55.0% | |
| TGGAGAGTGGAGGTTGTGGA+CGG | + | chr2_1:10959857-10959876 | Msa0194690:CDS | 55.0% | |
| ! | TGGTTCTGCAGAAGCAGAGC+AGG | + | chr2_1:10960372-10960391 | Msa0194690:CDS | 55.0% |
| !! | CTTCCAGTTTTGGCCGTGCA+TGG | + | chr2_1:10960400-10960419 | Msa0194690:CDS | 55.0% |
| ! | GCATGGGGTATCTTGCTTCC+TGG | + | chr2_1:10960439-10960458 | Msa0194690:CDS | 55.0% |
| ! | TGGGGTATCTTGCTTCCTGG+AGG | + | chr2_1:10960442-10960461 | Msa0194690:CDS | 55.0% |
| TTTGCGGTTGCTGAGCTTCG+CGG | + | chr2_1:10960571-10960590 | Msa0194690:CDS | 55.0% | |
| GGCCTGAGGAATGCATTAGC+TGG | - | chr2_1:10960661-10960680 | None:intergenic | 55.0% | |
| !!! | TTGATGGTTTTGGGGGCCTG+AGG | - | chr2_1:10960675-10960694 | None:intergenic | 55.0% |
| GTTGGCTGCTCCCCATTTGA+TGG | - | chr2_1:10960691-10960710 | None:intergenic | 55.0% | |
| CGAGCACGGGATCGGATATT+TGG | + | chr2_1:10960916-10960935 | Msa0194690:CDS | 55.0% | |
| GAACGAGGGAGGAGATGGGA+AGG | + | chr2_1:10958806-10958825 | Msa0194690:CDS | 60.0% | |
| GGGAGGAGATGGGAAGGAGA+AGG | + | chr2_1:10958812-10958831 | Msa0194690:CDS | 60.0% | |
| !! | GGTGCTGATGTGGCGGTTAC+GGG | + | chr2_1:10959035-10959054 | Msa0194690:CDS | 60.0% |
| ! | GGAAGACCGCCATGGTTCTG+AGG | - | chr2_1:10959383-10959402 | None:intergenic | 60.0% |
| GCCTGAACACCATGAGCCTC+AGG | - | chr2_1:10959752-10959771 | None:intergenic | 60.0% | |
| GGGTTGGAGAGTGGAGGTTG+TGG | + | chr2_1:10959853-10959872 | Msa0194690:CDS | 60.0% | |
| GGAGAGTGGAGGTTGTGGAC+GGG | + | chr2_1:10959858-10959877 | Msa0194690:CDS | 60.0% | |
| GAGAGTGGAGGTTGTGGACG+GGG | + | chr2_1:10959859-10959878 | Msa0194690:CDS | 60.0% | |
| AGAGTGGAGGTTGTGGACGG+GGG | + | chr2_1:10959860-10959879 | Msa0194690:CDS | 60.0% | |
| CTGGCTGCCAAGATACCTCC+AGG | - | chr2_1:10960460-10960479 | None:intergenic | 60.0% | |
| !! | CTGGAGGTATCTTGGCAGCC+AGG | + | chr2_1:10960458-10960477 | Msa0194690:CDS | 60.0% |
| AGAAGCAGCGAGCACGGGAT+CGG | + | chr2_1:10960908-10960927 | Msa0194690:CDS | 60.0% | |
| GCTGGTGGTCCTGAGGCTCA+TGG | + | chr2_1:10959740-10959759 | Msa0194690:CDS | 65.0% | |
| ACCGCGAGAAGCAGCGAGCA+CGG | + | chr2_1:10960902-10960921 | Msa0194690:CDS | 65.0% | |
| CCCGTGCTCGCTGCTTCTCG+CGG | - | chr2_1:10960906-10960925 | None:intergenic | 70.0% | |
| CCGCGAGAAGCAGCGAGCAC+GGG | + | chr2_1:10960903-10960922 | Msa0194690:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 10958384 | 10961074 | 10958384 | ID=Msa0194690;Name=Msa0194690 |
| chr2_1 | mRNA | 10958384 | 10961074 | 10958384 | ID=Msa0194690-mRNA-1;Parent=Msa0194690;Name=Msa0194690-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|-1|0|1|-1|1|1|0|896 |
| chr2_1 | exon | 10958384 | 10961074 | 10958384 | ID=Msa0194690-mRNA-1:exon:4882;Parent=Msa0194690-mRNA-1 |
| chr2_1 | CDS | 10958384 | 10961074 | 10958384 | ID=Msa0194690-mRNA-1:cds;Parent=Msa0194690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
