AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0621260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0621260 MtrunA17_Chr2g0285681 99.089 768 3 1 1 768 1 764 0.0 1579
Msa0621260 MtrunA17_Chr2g0285691 97.802 91 2 0 807 897 1 91 3.98e-56 188
Msa0621260 MtrunA17_Chr2g0285671 71.831 71 19 1 945 1014 223 293 6.31e-23 101
Msa0621260 MtrunA17_Chr2g0285661 55.670 97 35 1 936 1024 207 303 2.38e-19 90.5
Msa0621260 MtrunA17_Chr2g0285751 53.684 95 37 2 936 1023 172 266 3.47e-19 89.0
Msa0621260 MtrunA17_Chr2g0285641 57.143 84 33 2 936 1016 210 293 4.62e-17 83.6
Msa0621260 MtrunA17_Chr7g0275621 24.629 337 216 9 522 846 74 384 7.64e-14 75.1
Msa0621260 MtrunA17_Chr8g0347591 24.232 293 197 8 525 813 79 350 5.35e-13 72.0
Msa0621260 MtrunA17_Chr2g0278181 27.919 197 125 6 625 812 62 250 4.23e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0621260 AT5G54830.1 64.238 906 308 9 3 896 5 906 0.0 1199

Find 265 sgRNAs with CRISPR-Local

Find 452 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTCCCCATTTGATGGTTT+TGG 0.097688 4_2:+73335028 None:intergenic
CAACGTTTAAAAGGATAATT+TGG 0.111755 4_2:-73335003 Msa0621260:CDS
TGTTAATTTGATAGAAATTT+TGG 0.132998 4_2:-73332058 Msa0621260:CDS
ATTCCAACTGCATCAAATTT+TGG 0.141719 4_2:-73336963 Msa0621260:CDS
AGCTCAACACATGTTAAATT+TGG 0.155830 4_2:-73335106 Msa0621260:CDS
CGGCTAACATGACTGTTATT+TGG 0.161465 4_2:-73336401 Msa0621260:CDS
GCATCTATCTACCTGTTTAA+AGG 0.181231 4_2:+73334650 None:intergenic
GGATATTTGGAAGAGGAAAT+TGG 0.191249 4_2:-73334781 Msa0621260:CDS
TCACTTGGGCAATGATAATT+TGG 0.204909 4_2:-73334868 Msa0621260:CDS
TTTCAAGCTGAATGTGATTA+TGG 0.216023 4_2:-73331970 Msa0621260:CDS
TTGAACAACGAATGTTAAAT+TGG 0.224862 4_2:+73337037 None:intergenic
GCAGGATTTGCTTCCAGTTT+TGG 0.242070 4_2:-73335320 Msa0621260:CDS
ATCAACAGGTTACCTTCTTT+TGG 0.247908 4_2:-73335789 Msa0621260:CDS
CGAGCACGGGATCGGATATT+TGG 0.251463 4_2:-73334794 Msa0621260:CDS
ATCGATGAAGGAACTGTTTC+GGG 0.254510 4_2:+73337259 None:intergenic
AACATTTGAAGGGTGATAAT+TGG 0.254622 4_2:-73335222 Msa0621260:CDS
TCTCAATTTGATATGTTATC+TGG 0.254696 4_2:-73337158 Msa0621260:CDS
TTCGGTGTATGAGAAGAAAA+TGG 0.264953 4_2:-73335878 Msa0621260:CDS
TGATCCCTGTTCTTTCTGTT+TGG 0.265660 4_2:-73336989 Msa0621260:CDS
TATCACCCTTCAAATGTTTC+AGG 0.272420 4_2:+73335227 None:intergenic
GGTCTTCCGTTTGAGACTTT+TGG 0.272852 4_2:-73336315 Msa0621260:CDS
GATCCCTGTTCTTTCTGTTT+GGG 0.275825 4_2:-73336988 Msa0621260:CDS
TTTCGAATCCGATTTCATTA+TGG 0.284559 4_2:-73337237 Msa0621260:CDS
TTGGCAGGATTTGGCGGGTT+AGG 0.288091 4_2:+73336153 None:intergenic
GGTTTGCTTGCTCTTCTTGA+TGG 0.295940 4_2:-73332123 Msa0621260:CDS
TAAAGAATCTTGGCAGGATT+TGG 0.299021 4_2:+73336144 None:intergenic
TGGAATTGCTGCAATAGTTT+TGG 0.303405 4_2:-73335086 Msa0621260:CDS
CCTTGGTTCCATCTTGTAGT+AGG 0.312930 4_2:-73335513 Msa0621260:CDS
GCATGGGGTATCTTGCTTCC+TGG 0.316197 4_2:-73335271 Msa0621260:CDS
CTTGCTTCCTGGAGGTATCT+TGG 0.318098 4_2:-73335260 Msa0621260:CDS
CTAGTCCCACGGAACTAGTT+TGG 0.323814 4_2:-73335939 Msa0621260:CDS
GTTATGAATTACATGGCTTT+TGG 0.328103 4_2:-73336738 Msa0621260:CDS
TGGTGCTGATGTGGCGGTTA+CGG 0.329797 4_2:-73336676 Msa0621260:CDS
GGTTATCTTGCCATAGGATT+TGG 0.331663 4_2:-73335715 Msa0621260:CDS
ACCTGTTTAAAGGTTCTAAC+TGG 0.335200 4_2:+73334660 None:intergenic
TCAATTGAGATTGGTTTAGA+AGG 0.336814 4_2:-73336771 Msa0621260:CDS
GTTAACACTTACTGGATTGA+TGG 0.338446 4_2:-73335631 Msa0621260:CDS
AAACCATGCACGGCCAAAAC+TGG 0.343302 4_2:+73335307 None:intergenic
GAAGGAGAAGGAGAAGAATA+AGG 0.344994 4_2:-73336886 Msa0621260:CDS
GATTCTTTACATCAACAAAA+AGG 0.346577 4_2:-73336130 Msa0621260:CDS
ATGATAATTTGGTTCTTAGT+AGG 0.347365 4_2:-73334857 Msa0621260:CDS
GGTGCTGATGTGGCGGTTAC+GGG 0.348511 4_2:-73336675 Msa0621260:CDS
GGGAGCAGCCAACGTTTAAA+AGG 0.348957 4_2:-73335012 Msa0621260:CDS
TCCTGAGGCTCATGGTGTTC+AGG 0.352665 4_2:-73335962 Msa0621260:CDS
GGCTAACATGACTGTTATTT+GGG 0.359054 4_2:-73336400 Msa0621260:CDS
GGAGAGTGGAGGTTGTGGAC+GGG 0.363911 4_2:-73335852 Msa0621260:CDS
AATGATACAAGGTTGATATA+CGG 0.367078 4_2:-73336510 Msa0621260:CDS
TGGCAGGATTTGGCGGGTTA+GGG 0.367973 4_2:+73336154 None:intergenic
TTGGTCGTGTTAACACTTAC+TGG 0.371151 4_2:-73335639 Msa0621260:CDS
TTTGTTGATGTAAAGAATCT+TGG 0.376375 4_2:+73336134 None:intergenic
ATTGGTTTAGAAGGTGCAAC+TGG 0.377218 4_2:-73336762 Msa0621260:CDS
ATGACTGTTATTTGGGCGTT+GGG 0.381712 4_2:-73336393 Msa0621260:CDS
AGCTCGGAATCAGTAGCATT+AGG 0.382038 4_2:+73336705 None:intergenic
CAACTCCACTTAAAGTCATA+TGG 0.387100 4_2:-73335453 Msa0621260:CDS
TATGCTTTGGAAAACGTTCA+TGG 0.388460 4_2:-73334893 Msa0621260:CDS
TGATCAGGAGTGTTCCTATC+AGG 0.389061 4_2:+73335913 None:intergenic
TTTGGGAGACAGATATGCTT+TGG 0.389075 4_2:-73334906 Msa0621260:CDS
AAAGAGGATTCAATTGAGAT+TGG 0.391885 4_2:-73336780 Msa0621260:CDS
GTATAACAACAGTGTTGTTC+TGG 0.392054 4_2:-73335815 Msa0621260:CDS
TTTACTGGCATGAAGCATTT+GGG 0.393832 4_2:-73334923 Msa0621260:CDS
AATCGATGAAGGAACTGTTT+CGG 0.396822 4_2:+73337258 None:intergenic
GTTGGCTGCTCCCCATTTGA+TGG 0.397291 4_2:+73335022 None:intergenic
ATCTGTCATGTTCGGATGAT+AGG 0.402203 4_2:-73334065 Msa0621260:intron
TGTTGTTCTGGATGATCAAC+AGG 0.405150 4_2:-73335803 Msa0621260:CDS
TAGTCCCACGGAACTAGTTT+GGG 0.406291 4_2:-73335938 Msa0621260:CDS
AACGTTTAAAAGGATAATTT+GGG 0.407306 4_2:-73335002 Msa0621260:CDS
GAACTGTTTCGGGTGCATTT+CGG 0.409708 4_2:+73337269 None:intergenic
GGAAGACGGGTTGCCATTTG+TGG 0.409956 4_2:-73336646 Msa0621260:CDS
ATGTTGAACCATAATGAAAT+CGG 0.413668 4_2:+73337229 None:intergenic
AACTATGTTTGATAATTGTA+AGG 0.416063 4_2:-73336844 Msa0621260:CDS
GGAAGAGGAAATTGGGTGCT+TGG 0.421239 4_2:-73334773 Msa0621260:CDS
GTTCCATTGGTTGTTTCCAC+TGG 0.421377 4_2:-73336192 Msa0621260:CDS
AATTGATGAAGAATGTTACT+TGG 0.421489 4_2:-73337016 Msa0621260:CDS
CTTGGTTCCATCTTGTAGTA+GGG 0.421955 4_2:-73335512 Msa0621260:CDS
ATTGGTTGTTTCCACTGGTC+CGG 0.424350 4_2:-73336187 Msa0621260:CDS
TTTGTTGAAAGTGGAATTGT+TGG 0.425789 4_2:+73334716 None:intergenic
CACTTACTGGATTGATGGAC+AGG 0.426039 4_2:-73335626 Msa0621260:CDS
TCCAGTTAGAACCTTTAAAC+AGG 0.426564 4_2:-73334661 Msa0621260:intron
ATTGCCCATATGACTTTAAG+TGG 0.427061 4_2:+73335448 None:intergenic
AACTAGTTTGGGCTCCTGAT+AGG 0.428703 4_2:-73335927 Msa0621260:CDS
TGGAGAGTGGAGGTTGTGGA+CGG 0.432590 4_2:-73335853 Msa0621260:CDS
TTTCGGGTGCATTTCGGAGC+AGG 0.434132 4_2:+73337275 None:intergenic
TTCACAGGCTTCTGCAAGAA+TGG 0.438288 4_2:-73334687 Msa0621260:CDS
CATGTTTACTTGCAATACTC+AGG 0.441942 4_2:-73335190 Msa0621260:CDS
TAGTCATCGGAGGGATCATA+TGG 0.442035 4_2:+73331997 None:intergenic
GAGAGTGGAGGTTGTGGACG+GGG 0.443990 4_2:-73335851 Msa0621260:CDS
GAATATTTGCACATAATTGT+TGG 0.444607 4_2:-73334980 Msa0621260:CDS
CAGAGGTTTACAATCACAAA+AGG 0.448020 4_2:+73334129 None:intergenic
ATATCCCAAACAGAAAGAAC+AGG 0.448559 4_2:+73336984 None:intergenic
GGACCTTCATATATCGAATC+AGG 0.448577 4_2:+73336552 None:intergenic
ATCTCCTCCCTCGTTCTTCG+TGG 0.449854 4_2:+73336917 None:intergenic
TTCAACAAATAAAGATTCAC+AGG 0.453086 4_2:-73334702 Msa0621260:CDS
TGATCAATCTGTTGTTCAAT+CGG 0.455252 4_2:-73336421 Msa0621260:CDS
CTTCAAATGTTTCAGGTACC+TGG 0.455447 4_2:+73335234 None:intergenic
CTGGAGGTATCTTGGCAGCC+AGG 0.457385 4_2:-73335252 Msa0621260:CDS
TGGCTCTGATGTGCATTGGT+GGG 0.457456 4_2:-73337138 Msa0621260:CDS
AGACCTTTGAGTCAGGTTGA+TGG 0.457589 4_2:-73336450 Msa0621260:CDS
GGGAGGAGATGGGAAGGAGA+AGG 0.463195 4_2:-73336904 Msa0621260:CDS
ACTGATTCCGAGCTTATGAT+TGG 0.463497 4_2:-73336696 Msa0621260:CDS
GCTCGGAATCAGTAGCATTA+GGG 0.465085 4_2:+73336706 None:intergenic
CTGGCTCTGATGTGCATTGG+TGG 0.465288 4_2:-73337139 Msa0621260:CDS
GGGTTGGAGAGTGGAGGTTG+TGG 0.465828 4_2:-73335857 Msa0621260:CDS
TTCACCAAACCAACTCTATC+CGG 0.466393 4_2:+73336531 None:intergenic
TGACCAAAATTTGATGCAGT+TGG 0.469612 4_2:+73336960 None:intergenic
GATATTTGGAAGAGGAAATT+GGG 0.472653 4_2:-73334780 Msa0621260:CDS
CTTAAAGTCATATGGGCAAT+GGG 0.473317 4_2:-73335445 Msa0621260:CDS
CATCTTGTAGTAGGGGCAAA+AGG 0.473661 4_2:-73335504 Msa0621260:CDS
ATATAAGAGACCTTTGAGTC+AGG 0.477326 4_2:-73336457 Msa0621260:CDS
AAAACGTTCATGGACTCACT+TGG 0.477332 4_2:-73334883 Msa0621260:CDS
ACGAAGAACGAGGGAGGAGA+TGG 0.478754 4_2:-73336915 Msa0621260:CDS
TAATGCGGTAAAACAGTATC+CGG 0.478815 4_2:+73336357 None:intergenic
GAATGATAGTAGATCTGATC+AGG 0.479177 4_2:+73335898 None:intergenic
CATGACTGTTATTTGGGCGT+TGG 0.479843 4_2:-73336394 Msa0621260:CDS
GATAAACAGTTATACATATG+TGG 0.480665 4_2:-73335683 Msa0621260:CDS
TTACAATTATCAAACATAGT+TGG 0.481504 4_2:+73336846 None:intergenic
GAATCTTTATTTGTTGAAAG+TGG 0.482826 4_2:+73334707 None:intergenic
TTGGAGTTTGAATTTGAAAG+AGG 0.482994 4_2:-73336796 Msa0621260:CDS
TATGGGCAATGGGTAGTAGA+TGG 0.485381 4_2:-73335435 Msa0621260:CDS
ATCGGATTCGAAATCGATGA+AGG 0.494635 4_2:+73337247 None:intergenic
ATGACTTTAAGTGGAGTTGT+GGG 0.494726 4_2:+73335457 None:intergenic
TTTGCGGTTGCTGAGCTTCG+CGG 0.494762 4_2:-73335139 Msa0621260:CDS
ATTGGAATTTACACGTCCCT+TGG 0.496061 4_2:-73335530 Msa0621260:CDS
GCCTGAACACCATGAGCCTC+AGG 0.496343 4_2:+73335961 None:intergenic
CAGTGTGGCATTCCCACCAA+TGG 0.497818 4_2:+73336017 None:intergenic
CATTCCACTGCCAAATCCTA+TGG 0.498718 4_2:+73335705 None:intergenic
CCGCGAGAAGCAGCGAGCAC+GGG 0.500795 4_2:-73334807 Msa0621260:CDS
TCGGTGTATGAGAAGAAAAT+GGG 0.502362 4_2:-73335877 Msa0621260:CDS
TGATCAGATCTACTATCATT+CGG 0.502694 4_2:-73335896 Msa0621260:CDS
GGCTCTGATGTGCATTGGTG+GGG 0.503046 4_2:-73337137 Msa0621260:CDS
TGATTCGATATATGAAGGTC+CGG 0.503314 4_2:-73336550 Msa0621260:CDS
TAGTAATTATCTGTCATGTT+CGG 0.503868 4_2:-73334073 Msa0621260:CDS
ACCGCGAGAAGCAGCGAGCA+CGG 0.506718 4_2:-73334808 Msa0621260:CDS
GAAGAAAATGGGTTGGAGAG+TGG 0.506742 4_2:-73335866 Msa0621260:CDS
GGCCTGAGGAATGCATTAGC+TGG 0.507546 4_2:+73335052 None:intergenic
CAGTGGGATCATGTGCCACC+AGG 0.510023 4_2:+73332157 None:intergenic
TGTCCTGATTCGATATATGA+AGG 0.511057 4_2:-73336555 Msa0621260:CDS
ACTTAAAGTCATATGGGCAA+TGG 0.511086 4_2:-73335446 Msa0621260:CDS
TGGTTCTGCAGAAGCAGAGC+AGG 0.512384 4_2:-73335338 Msa0621260:CDS
GCTGGTGGTCCTGAGGCTCA+TGG 0.515891 4_2:-73335970 Msa0621260:CDS
TGCTGATGCAAAAGTTCCAT+TGG 0.516316 4_2:-73336205 Msa0621260:CDS
AGAATCTTGGCAGGATTTGG+CGG 0.516390 4_2:+73336147 None:intergenic
CCCGATGAAGATTATCCAGA+TGG 0.516693 4_2:-73331943 Msa0621260:CDS
TTTGATAATTTCACCAATGG+AGG 0.517652 4_2:-73337098 Msa0621260:CDS
GAATCTTGGCAGGATTTGGC+GGG 0.518974 4_2:+73336148 None:intergenic
CCATCTGGATAATCTTCATC+GGG 0.520481 4_2:+73331943 None:intergenic
AGATGGGAAGGAGAAGGAGA+AGG 0.521339 4_2:-73336898 Msa0621260:CDS
AGAAGCAGCGAGCACGGGAT+CGG 0.521776 4_2:-73334802 Msa0621260:CDS
TCTTTATCACCAGCATCTAA+AGG 0.522322 4_2:+73336246 None:intergenic
AGGTCCGGATAGAGTTGGTT+TGG 0.522338 4_2:-73336535 Msa0621260:CDS
TTGATGTAAAGAATCTTGGC+AGG 0.522540 4_2:+73336138 None:intergenic
AACTCCACTTAAAGTCATAT+GGG 0.525949 4_2:-73335452 Msa0621260:CDS
GTGAGATGCAAAACAGAAAA+CGG 0.526080 4_2:-73335562 Msa0621260:CDS
CGAAGAACGAGGGAGGAGAT+GGG 0.526235 4_2:-73336914 Msa0621260:CDS
ATTGATGAAGAATGTTACTT+GGG 0.527040 4_2:-73337015 Msa0621260:CDS
TATGACTTTAAGTGGAGTTG+TGG 0.527868 4_2:+73335456 None:intergenic
CGCATCAGCTGAACAAGTAT+AGG 0.528232 4_2:+73335361 None:intergenic
TAGGAGTGATGGGGTTTCGT+TGG 0.530705 4_2:-73336484 Msa0621260:CDS
CAGTTATACATATGTGGGAT+GGG 0.531034 4_2:-73335677 Msa0621260:CDS
GAACGAGGGAGGAGATGGGA+AGG 0.531311 4_2:-73336910 Msa0621260:CDS
TATATTACTACAGATCCCAT+TGG 0.531920 4_2:-73336033 Msa0621260:CDS
TTTAGATGCTGGTGATAAAG+AGG 0.532835 4_2:-73336244 Msa0621260:CDS
CTTTGACAATGTCCAAAAGA+AGG 0.532849 4_2:+73335777 None:intergenic
TGTTGGACTCAAGAGATCAA+TGG 0.533020 4_2:+73334733 None:intergenic
GACATATGTCAAGAGATTCA+AGG 0.535101 4_2:+73332091 None:intergenic
CAGGTACCTGAAACATTTGA+AGG 0.535559 4_2:-73335233 Msa0621260:CDS
TGAAACAATGAATCCTCCAT+TGG 0.538253 4_2:+73337085 None:intergenic
AAGAGTGGTTATCTTGCCAT+AGG 0.539558 4_2:-73335721 Msa0621260:CDS
ATGATACAAGGTTGATATAC+GGG 0.540824 4_2:-73336509 Msa0621260:CDS
TCTATGTCTGAGATCCCATC+TGG 0.542052 4_2:+73331928 None:intergenic
AGAAAACGGCATGATTACAT+TGG 0.544819 4_2:-73335548 Msa0621260:CDS
GGGTTAGGGTAATGCAAAGC+CGG 0.546867 4_2:+73336168 None:intergenic
CCCATCTGGATAATCTTCAT+CGG 0.548283 4_2:+73331942 None:intergenic
AAATGACCAAAAGTCTCAAA+CGG 0.548603 4_2:+73336309 None:intergenic
TGGGTTGATGACAATGGTGT+TGG 0.549825 4_2:-73335658 Msa0621260:CDS
CAGAATGTGAATGATTGTAA+AGG 0.550009 4_2:-73336270 Msa0621260:CDS
ACAGTTATACATATGTGGGA+TGG 0.551164 4_2:-73335678 Msa0621260:CDS
CAAGGTTGATATACGGGCAT+AGG 0.552235 4_2:-73336503 Msa0621260:CDS
AGTGTGGCATTCCCACCAAT+GGG 0.555344 4_2:+73336018 None:intergenic
TTACCATCAACCTGACTCAA+AGG 0.556389 4_2:+73336447 None:intergenic
GATCCCACTGAGACTAATGA+TGG 0.556745 4_2:-73332144 Msa0621260:CDS
CTGGCTGCCAAGATACCTCC+AGG 0.556842 4_2:+73335253 None:intergenic
GAGAGTGGAAAGAGGAGTGC+CGG 0.559547 4_2:-73336094 Msa0621260:CDS
ATATACGGGCATAGGAGTGA+TGG 0.560999 4_2:-73336495 Msa0621260:CDS
AACCAGCTAATGCATTCCTC+AGG 0.561640 4_2:-73335054 Msa0621260:CDS
TATACGGGCATAGGAGTGAT+GGG 0.562005 4_2:-73336494 Msa0621260:CDS
TTGGTTCCATCTTGTAGTAG+GGG 0.563124 4_2:-73335511 Msa0621260:CDS
CTTGCCATAGGATTTGGCAG+TGG 0.563630 4_2:-73335709 Msa0621260:CDS
ATCAGCACCAATCATAAGCT+CGG 0.565906 4_2:+73336689 None:intergenic
ATGTTTACTTGCAATACTCA+GGG 0.567475 4_2:-73335189 Msa0621260:CDS
ATAAACAGTTATACATATGT+GGG 0.568097 4_2:-73335682 Msa0621260:CDS
GTGAAGATGGATCTGTCGAA+GGG 0.568991 4_2:-73336581 Msa0621260:CDS
AACACTGTTGTTATACATGT+CGG 0.570128 4_2:+73335822 None:intergenic
TGTGTGAAGAATAGTGAAGA+TGG 0.570545 4_2:-73336594 Msa0621260:CDS
ATAAAGCGCAACATCATGCC+CGG 0.572365 4_2:+73336053 None:intergenic
CTAACTGAGACAATTTATGC+TGG 0.573223 4_2:-73335988 Msa0621260:CDS
GGAAGCTCCTGTGTTGAGAG+TGG 0.577718 4_2:-73336109 Msa0621260:CDS
CGGGATCGGATATTTGGAAG+AGG 0.577832 4_2:-73334788 Msa0621260:CDS
CCTGTGTTGAGAGTGGAAAG+AGG 0.578222 4_2:-73336102 Msa0621260:CDS
GAAAATGGGTTGGAGAGTGG+AGG 0.579894 4_2:-73335863 Msa0621260:CDS
TGTAAAGGTCCTTTAGATGC+TGG 0.582856 4_2:-73336255 Msa0621260:CDS
AACTGGGGTTATGAATTACA+TGG 0.584156 4_2:-73336745 Msa0621260:CDS
TATCTGGCTCTGATGTGCAT+TGG 0.584450 4_2:-73337142 Msa0621260:CDS
ATTACTACAGATCCCATTGG+TGG 0.584690 4_2:-73336030 Msa0621260:CDS
CAGATAATTACTAGTGTCGA+GGG 0.586083 4_2:+73334083 None:intergenic
TTGGTTTAGAAGGTGCAACT+GGG 0.587129 4_2:-73336761 Msa0621260:CDS
GTAATGAACATCTTACTGAA+AGG 0.589810 4_2:-73335411 Msa0621260:CDS
CCCGTGCTCGCTGCTTCTCG+CGG 0.593232 4_2:+73334807 None:intergenic
GTTGGGGAAGATGAGAGCTC+CGG 0.594601 4_2:-73336376 Msa0621260:CDS
TTTATGATGTTTCTTGCATG+GGG 0.595008 4_2:-73335286 Msa0621260:CDS
ATACTTGTTCAGCTGATGCG+TGG 0.598725 4_2:-73335358 Msa0621260:CDS
AGTGAAGATGGATCTGTCGA+AGG 0.598930 4_2:-73336582 Msa0621260:CDS
TTGGTTTGGTGAATGATACA+AGG 0.599261 4_2:-73336521 Msa0621260:CDS
TATGAAGGTCCGGATAGAGT+TGG 0.600834 4_2:-73336540 Msa0621260:CDS
AAACCATCATTAGTCTCAGT+GGG 0.601715 4_2:+73332141 None:intergenic
TCAATGATGTTGTTACACTC+TGG 0.602077 4_2:+73335481 None:intergenic
AGCTTGAAATGAATAGTCAT+CGG 0.603607 4_2:+73331984 None:intergenic
AGGAGCCCAAACTAGTTCCG+TGG 0.607300 4_2:+73335933 None:intergenic
GGAAGACCGCCATGGTTCTG+AGG 0.608095 4_2:+73336330 None:intergenic
ACAGATAATTACTAGTGTCG+AGG 0.611046 4_2:+73334082 None:intergenic
GCTTATGATTGGTGCTGATG+TGG 0.613221 4_2:-73336685 Msa0621260:CDS
AAATTGGGTGCTTGGCAATG+AGG 0.614704 4_2:-73334765 Msa0621260:CDS
AGAGTGGAGGTTGTGGACGG+GGG 0.616025 4_2:-73335850 Msa0621260:CDS
AATTTATGCTGGTGGTCCTG+AGG 0.616178 4_2:-73335977 Msa0621260:CDS
GGAGCCCAAACTAGTTCCGT+GGG 0.616346 4_2:+73335934 None:intergenic
CCGATGAAGATTATCCAGAT+GGG 0.617441 4_2:-73331942 Msa0621260:CDS
AAACATCATAAAACCATGCA+CGG 0.617454 4_2:+73335297 None:intergenic
CTCAGTTAGATTCCTCAGTG+TGG 0.617997 4_2:+73336002 None:intergenic
TGTATGAGAAGAAAATGGGT+TGG 0.619184 4_2:-73335873 Msa0621260:CDS
ACTGAGACAATTTATGCTGG+TGG 0.620789 4_2:-73335985 Msa0621260:CDS
TTACTACAGATCCCATTGGT+GGG 0.621508 4_2:-73336029 Msa0621260:CDS
CAAACCATCATTAGTCTCAG+TGG 0.622009 4_2:+73332140 None:intergenic
TGGGATCATGTGCCACCAGG+TGG 0.623306 4_2:+73332160 None:intergenic
TGAAATGAATAGTCATCGGA+GGG 0.624314 4_2:+73331988 None:intergenic
TGGTGTTCAGGCTAGTCCCA+CGG 0.624788 4_2:-73335950 Msa0621260:CDS
GGACCAGTGGAAACAACCAA+TGG 0.625228 4_2:+73336189 None:intergenic
AAACGTTCATGGACTCACTT+GGG 0.625372 4_2:-73334882 Msa0621260:CDS
TGGGGTATCTTGCTTCCTGG+AGG 0.628780 4_2:-73335268 Msa0621260:CDS
GTAATGCAAAGCCGGACCAG+TGG 0.629267 4_2:+73336176 None:intergenic
CCTCTTTCCACTCTCAACAC+AGG 0.640164 4_2:+73336102 None:intergenic
GCTTGTATAGAAAACGTGAC+CGG 0.640499 4_2:+73336075 None:intergenic
ATGTCAAGAGATTCAAGGTG+AGG 0.642267 4_2:+73332096 None:intergenic
AGGTACCTGAAACATTTGAA+GGG 0.647814 4_2:-73335232 Msa0621260:CDS
TATGATTGGTGCTGATGTGG+CGG 0.648845 4_2:-73336682 Msa0621260:CDS
TTGAAATGAATAGTCATCGG+AGG 0.649094 4_2:+73331987 None:intergenic
TGGTTTAGAAGGTGCAACTG+GGG 0.650155 4_2:-73336760 Msa0621260:CDS
TGACTGTTATTTGGGCGTTG+GGG 0.650959 4_2:-73336392 Msa0621260:CDS
CATTATCTTCCTCAGAACCA+TGG 0.653127 4_2:-73336339 Msa0621260:CDS
TCAATATCTATTGCTGCTCG+TGG 0.653461 4_2:-73335751 Msa0621260:CDS
GTGGGATGGGTTGATGACAA+TGG 0.653502 4_2:-73335664 Msa0621260:CDS
TCTCAAACGGAAGACCGCCA+TGG 0.654243 4_2:+73336322 None:intergenic
CTACTACAAGATGGAACCAA+GGG 0.657528 4_2:+73335514 None:intergenic
AATATCACCACGAAGAACGA+GGG 0.661469 4_2:-73336924 Msa0621260:CDS
AAATATCACCACGAAGAACG+AGG 0.663007 4_2:-73336925 Msa0621260:CDS
ATCACCACGAAGAACGAGGG+AGG 0.667011 4_2:-73336921 Msa0621260:CDS
CCTACTACAAGATGGAACCA+AGG 0.677148 4_2:+73335513 None:intergenic
TTCGAGCATACATCTTACAC+AGG 0.677952 4_2:-73335599 Msa0621260:CDS
TATCCCAAACAGAAAGAACA+GGG 0.684383 4_2:+73336985 None:intergenic
TGGTTCTGAGGAAGATAATG+CGG 0.694284 4_2:+73336342 None:intergenic
ATAATTACTAGTGTCGAGGG+AGG 0.696115 4_2:+73334086 None:intergenic
ATACGGGCATAGGAGTGATG+GGG 0.707780 4_2:-73336493 Msa0621260:CDS
TGAAGATGGATCTGTCGAAG+GGG 0.709595 4_2:-73336580 Msa0621260:CDS
ATGGTTCAACATCAACTCAG+AGG 0.710473 4_2:-73337218 Msa0621260:CDS
ACTTTAATACTGATTCCCAG+AGG 0.710644 4_2:+73334112 None:intergenic
TATCTTCCTCAGAACCATGG+CGG 0.760198 4_2:-73336336 Msa0621260:CDS
TTGGTGGGAATGCCACACTG+AGG 0.762184 4_2:-73336014 Msa0621260:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAAATAAAATAATAT+CGG + chr4_2:73335427-73335446 None:intergenic 0.0%
!!! ATTATTTGATTTTAAAAAAC+GGG + chr4_2:73335267-73335286 None:intergenic 10.0%
!!! AAATTTACAACAATGTTTTT+TGG + chr4_2:73335005-73335024 None:intergenic 15.0%
!!! AAAAACATTGTTGTAAATTT+TGG - chr4_2:73335005-73335024 Msa0621260:CDS 15.0%
!!! AAAACATTGTTGTAAATTTT+GGG - chr4_2:73335006-73335025 Msa0621260:CDS 15.0%
!!! AATATTTTTCAATCAAATGT+GGG + chr4_2:73335488-73335507 None:intergenic 15.0%
!!! TAATATTTTTCAATCAAATG+TGG + chr4_2:73335489-73335508 None:intergenic 15.0%
!! AATAAAATCTTAAACATATG+TGG + chr4_2:73335892-73335911 None:intergenic 15.0%
!! CATTAACAATATTAGTTAAT+TGG - chr4_2:73336551-73336570 Msa0621260:CDS 15.0%
!!! CTTTTTATTAAAAAAACTTG+TGG + chr4_2:73336696-73336715 None:intergenic 15.0%
!! TAATTAAATTATTAAGGAGT+TGG + chr4_2:73336745-73336764 None:intergenic 15.0%
!!! TGTTAATTTGATAGAAATTT+TGG - chr4_2:73337186-73337205 Msa0621260:CDS 15.0%
!! TTACAATTATCAAACATAGT+TGG + chr4_2:73332401-73332420 None:intergenic 20.0%
!!! AACTATGTTTGATAATTGTA+AGG - chr4_2:73332400-73332419 Msa0621260:intron 20.0%
!! ATAAAAAAATCATCCACAAA+TGG + chr4_2:73332614-73332633 None:intergenic 20.0%
!! ATAAACAGTTATACATATGT+GGG - chr4_2:73333562-73333581 Msa0621260:intron 20.0%
!! AACGTTTAAAAGGATAATTT+GGG - chr4_2:73334242-73334261 Msa0621260:intron 20.0%
!! TTATTATTGTCTGTTAATGT+AGG - chr4_2:73334927-73334946 Msa0621260:CDS 20.0%
!!! TTTATTTTTTGAAAGGTTTC+CGG - chr4_2:73335439-73335458 Msa0621260:CDS 20.0%
!! CATCTAATTATATCTTATAC+CGG + chr4_2:73335461-73335480 None:intergenic 20.0%
!! AATATATGATGTTATCTACA+TGG + chr4_2:73335623-73335642 None:intergenic 20.0%
!! AAGTATTTACTCAATTGAAT+AGG + chr4_2:73335733-73335752 None:intergenic 20.0%
!! TGTTTAAATTTGTATCGTAA+TGG + chr4_2:73335860-73335879 None:intergenic 20.0%
!! CGATACAAATTTAAACATAA+AGG - chr4_2:73335863-73335882 Msa0621260:CDS 20.0%
!!! AATTTTCTAACTATGATGTT+GGG + chr4_2:73335927-73335946 None:intergenic 20.0%
!!! TTTTAAATTAGTGTCTGTAT+TGG + chr4_2:73336095-73336114 None:intergenic 20.0%
!! AAATATAATTCTATACCTCT+TGG - chr4_2:73336855-73336874 Msa0621260:CDS 20.0%
!!! TTTGGATTTTCTATTATCTA+CGG + chr4_2:73336890-73336909 None:intergenic 20.0%
!! GATAATAGAAAATCCAAAAT+AGG - chr4_2:73336892-73336911 Msa0621260:CDS 20.0%
! ATGTTGAACCATAATGAAAT+CGG + chr4_2:73332018-73332037 None:intergenic 25.0%
!!! AATCATCGATGATTTTGAAA+TGG + chr4_2:73332052-73332071 None:intergenic 25.0%
! TCTCAATTTGATATGTTATC+TGG - chr4_2:73332086-73332105 Msa0621260:CDS 25.0%
!!! GATTTTGATAATTTCACCAA+TGG - chr4_2:73332143-73332162 Msa0621260:CDS 25.0%
! TTGAACAACGAATGTTAAAT+TGG + chr4_2:73332210-73332229 None:intergenic 25.0%
! AATTGATGAAGAATGTTACT+TGG - chr4_2:73332228-73332247 Msa0621260:intron 25.0%
!! ATTGATGAAGAATGTTACTT+GGG - chr4_2:73332229-73332248 Msa0621260:intron 25.0%
!!! TAATTGTAAGGTTTTGTCTA+AGG - chr4_2:73332412-73332431 Msa0621260:intron 25.0%
!!! AATGATACAAGGTTGATATA+CGG - chr4_2:73332734-73332753 Msa0621260:intron 25.0%
! TTTGTTGATGTAAAGAATCT+TGG + chr4_2:73333113-73333132 None:intergenic 25.0%
! GATTCTTTACATCAACAAAA+AGG - chr4_2:73333114-73333133 Msa0621260:intron 25.0%
! GATAAACAGTTATACATATG+TGG - chr4_2:73333561-73333580 Msa0621260:intron 25.0%
!! TTTTATGATGTTTCTTGCAT+GGG - chr4_2:73333957-73333976 Msa0621260:intron 25.0%
!! CAAATTATCCTTTTAAACGT+TGG + chr4_2:73334243-73334262 None:intergenic 25.0%
! CAACGTTTAAAAGGATAATT+TGG - chr4_2:73334241-73334260 Msa0621260:intron 25.0%
! GAATATTTGCACATAATTGT+TGG - chr4_2:73334264-73334283 Msa0621260:intron 25.0%
!!! ATGATAATTTGGTTCTTAGT+AGG - chr4_2:73334387-73334406 Msa0621260:intron 25.0%
!! GAATCTTTATTTGTTGAAAG+TGG + chr4_2:73334540-73334559 None:intergenic 25.0%
! TTCAACAAATAAAGATTCAC+AGG - chr4_2:73334542-73334561 Msa0621260:intron 25.0%
! AGGATTATTCATTAGTTATG+AGG - chr4_2:73334692-73334711 Msa0621260:CDS 25.0%
! GGATTATTCATTAGTTATGA+GGG - chr4_2:73334693-73334712 Msa0621260:CDS 25.0%
! AAGAAAAGATATAACCTATC+TGG + chr4_2:73334826-73334845 None:intergenic 25.0%
!!! TCTTGTTTTTTGTTTTGGTT+GGG + chr4_2:73334879-73334898 None:intergenic 25.0%
!!! TTCTTGTTTTTTGTTTTGGT+TGG + chr4_2:73334880-73334899 None:intergenic 25.0%
!!! TCTCTTCTTGTTTTTTGTTT+TGG + chr4_2:73334884-73334903 None:intergenic 25.0%
!!! AATGTGATTGTGTTTAGTTT+TGG - chr4_2:73335076-73335095 Msa0621260:CDS 25.0%
! TAGTAATTATCTGTCATGTT+CGG - chr4_2:73335171-73335190 Msa0621260:CDS 25.0%
!! ACTTCACAAAGATGATATTT+TGG + chr4_2:73335239-73335258 None:intergenic 25.0%
! ATTTACTCAATTGAATAGGT+CGG + chr4_2:73335729-73335748 None:intergenic 25.0%
!! GAATTTTCTAACTATGATGT+TGG + chr4_2:73335928-73335947 None:intergenic 25.0%
!! AGAATTTTCGAAATAAAGGT+CGG + chr4_2:73336500-73336519 None:intergenic 25.0%
!! TGACAGAATTTTCGAAATAA+AGG + chr4_2:73336504-73336523 None:intergenic 25.0%
!! TTGGATTTTCTATTATCTAC+GGG + chr4_2:73336889-73336908 None:intergenic 25.0%
! TTCCTATCCTTGTTCTTTTT+CGG - chr4_2:73331936-73331955 Msa0621260:CDS 30.0%
TTTCGAATCCGATTTCATTA+TGG - chr4_2:73332007-73332026 Msa0621260:CDS 30.0%
! TTTGATAATTTCACCAATGG+AGG - chr4_2:73332146-73332165 Msa0621260:CDS 30.0%
! ATTCCAACTGCATCAAATTT+TGG - chr4_2:73332281-73332300 Msa0621260:intron 30.0%
!! AGGTTTTGTCTAAGGATTTT+AGG - chr4_2:73332420-73332439 Msa0621260:intron 30.0%
!! GGTTTTGTCTAAGGATTTTA+GGG - chr4_2:73332421-73332440 Msa0621260:intron 30.0%
TTGGAGTTTGAATTTGAAAG+AGG - chr4_2:73332448-73332467 Msa0621260:intron 30.0%
AAAGAGGATTCAATTGAGAT+TGG - chr4_2:73332464-73332483 Msa0621260:intron 30.0%
!! TCAATTGAGATTGGTTTAGA+AGG - chr4_2:73332473-73332492 Msa0621260:intron 30.0%
! GTTATGAATTACATGGCTTT+TGG - chr4_2:73332506-73332525 Msa0621260:intron 30.0%
!! ATGATACAAGGTTGATATAC+GGG - chr4_2:73332735-73332754 Msa0621260:intron 30.0%
TGATCAATCTGTTGTTCAAT+CGG - chr4_2:73332823-73332842 Msa0621260:intron 30.0%
AAATGACCAAAAGTCTCAAA+CGG + chr4_2:73332938-73332957 None:intergenic 30.0%
CAGAATGTGAATGATTGTAA+AGG - chr4_2:73332974-73332993 Msa0621260:intron 30.0%
TATATTACTACAGATCCCAT+TGG - chr4_2:73333211-73333230 Msa0621260:intron 30.0%
TGATCAGATCTACTATCATT+CGG - chr4_2:73333348-73333367 Msa0621260:intron 30.0%
AACACTGTTGTTATACATGT+CGG + chr4_2:73333425-73333444 None:intergenic 30.0%
AACTCCACTTAAAGTCATAT+GGG - chr4_2:73333792-73333811 Msa0621260:intron 30.0%
GTAATGAACATCTTACTGAA+AGG - chr4_2:73333833-73333852 Msa0621260:intron 30.0%
AAACATCATAAAACCATGCA+CGG + chr4_2:73333950-73333969 None:intergenic 30.0%
! GTTTTATGATGTTTCTTGCA+TGG - chr4_2:73333956-73333975 Msa0621260:intron 30.0%
TTTATGATGTTTCTTGCATG+GGG - chr4_2:73333958-73333977 Msa0621260:intron 30.0%
AACATTTGAAGGGTGATAAT+TGG - chr4_2:73334022-73334041 Msa0621260:intron 30.0%
ATGTTTACTTGCAATACTCA+GGG - chr4_2:73334055-73334074 Msa0621260:intron 30.0%
! TTTTCTTGCACTTCTTTTTG+CGG - chr4_2:73334089-73334108 Msa0621260:CDS 30.0%
AGCTCAACACATGTTAAATT+TGG - chr4_2:73334138-73334157 Msa0621260:CDS 30.0%
GATATTTGGAAGAGGAAATT+GGG - chr4_2:73334464-73334483 Msa0621260:intron 30.0%
TTTGTTGAAAGTGGAATTGT+TGG + chr4_2:73334531-73334550 None:intergenic 30.0%
AAACTACTCTCTTCACAAAA+TGG + chr4_2:73334780-73334799 None:intergenic 30.0%
!!! TTGTTTTTTGTTTTGGTTGG+GGG + chr4_2:73334877-73334896 None:intergenic 30.0%
!!! CTTGTTTTTTGTTTTGGTTG+GGG + chr4_2:73334878-73334897 None:intergenic 30.0%
TTCTGTTCCATAATGTTTCT+AGG - chr4_2:73334950-73334969 Msa0621260:CDS 30.0%
AAGTACACCTAGAAACATTA+TGG + chr4_2:73334960-73334979 None:intergenic 30.0%
!!! TTACAACAATGTTTTTTGGC+TGG + chr4_2:73335001-73335020 None:intergenic 30.0%
!!! ATTGTGTTTAGTTTTGGTCA+TGG - chr4_2:73335082-73335101 Msa0621260:CDS 30.0%
! TTTTGTGATTGTAAACCTCT+GGG - chr4_2:73335117-73335136 Msa0621260:CDS 30.0%
!! AAGATGATATTTTGGATGAG+CGG + chr4_2:73335231-73335250 None:intergenic 30.0%
TCATTTCATTCTCCAAGAAT+TGG + chr4_2:73335305-73335324 None:intergenic 30.0%
CAACTCATTCATATTTGCTT+AGG - chr4_2:73335566-73335585 Msa0621260:CDS 30.0%
ATTCTACCAACATTCTATGA+AGG - chr4_2:73335944-73335963 Msa0621260:CDS 30.0%
TACAATCCTTCATAGAATGT+TGG + chr4_2:73335953-73335972 None:intergenic 30.0%
GTACAAAAACAATGCATGTA+TGG + chr4_2:73336018-73336037 None:intergenic 30.0%
GTAGTTAATTACTCTTGGAT+TGG + chr4_2:73336045-73336064 None:intergenic 30.0%
TCCAAGAGTAATTAACTACA+TGG - chr4_2:73336046-73336065 Msa0621260:CDS 30.0%
! GGACTATTTTGCAAAAAATG+TGG - chr4_2:73336410-73336429 Msa0621260:CDS 30.0%
AGCTTGAAATGAATAGTCAT+CGG + chr4_2:73337263-73337282 None:intergenic 30.0%
TTTCAAGCTGAATGTGATTA+TGG - chr4_2:73337274-73337293 Msa0621260:CDS 30.0%
ATCCGAAAAAGAACAAGGAT+AGG + chr4_2:73331941-73331960 None:intergenic 35.0%
TGCATATCCGAAAAAGAACA+AGG + chr4_2:73331946-73331965 None:intergenic 35.0%
AATCGATGAAGGAACTGTTT+CGG + chr4_2:73331989-73332008 None:intergenic 35.0%
! TCATCGATGATTGCTCTTTT+AGG - chr4_2:73332060-73332079 Msa0621260:CDS 35.0%
! CATCGATGATTGCTCTTTTA+GGG - chr4_2:73332061-73332080 Msa0621260:CDS 35.0%
TGAAACAATGAATCCTCCAT+TGG + chr4_2:73332162-73332181 None:intergenic 35.0%
TATCCCAAACAGAAAGAACA+GGG + chr4_2:73332262-73332281 None:intergenic 35.0%
ATATCCCAAACAGAAAGAAC+AGG + chr4_2:73332263-73332282 None:intergenic 35.0%
TGACCAAAATTTGATGCAGT+TGG + chr4_2:73332287-73332306 None:intergenic 35.0%
AACTGGGGTTATGAATTACA+TGG - chr4_2:73332499-73332518 Msa0621260:intron 35.0%
! TGAATTACATGGCTTTTGGT+TGG - chr4_2:73332510-73332529 Msa0621260:intron 35.0%
!! GAATTACATGGCTTTTGGTT+GGG - chr4_2:73332511-73332530 Msa0621260:intron 35.0%
TGTGTGAAGAATAGTGAAGA+TGG - chr4_2:73332650-73332669 Msa0621260:intron 35.0%
! TGTCCTGATTCGATATATGA+AGG - chr4_2:73332689-73332708 Msa0621260:intron 35.0%
TGATTCGATATATGAAGGTC+CGG - chr4_2:73332694-73332713 Msa0621260:intron 35.0%
!! TTGGTTTGGTGAATGATACA+AGG - chr4_2:73332723-73332742 Msa0621260:intron 35.0%
ATATAAGAGACCTTTGAGTC+AGG - chr4_2:73332787-73332806 Msa0621260:intron 35.0%
! GGCTAACATGACTGTTATTT+GGG - chr4_2:73332844-73332863 Msa0621260:intron 35.0%
TAATGCGGTAAAACAGTATC+CGG + chr4_2:73332890-73332909 None:intergenic 35.0%
!! GTTTGAGACTTTTGGTCATT+TGG - chr4_2:73332937-73332956 Msa0621260:intron 35.0%
TCTTTATCACCAGCATCTAA+AGG + chr4_2:73333001-73333020 None:intergenic 35.0%
TTTAGATGCTGGTGATAAAG+AGG - chr4_2:73333000-73333019 Msa0621260:intron 35.0%
TAAAGAATCTTGGCAGGATT+TGG + chr4_2:73333103-73333122 None:intergenic 35.0%
TTGATGTAAAGAATCTTGGC+AGG + chr4_2:73333109-73333128 None:intergenic 35.0%
CTAACTGAGACAATTTATGC+TGG - chr4_2:73333256-73333275 Msa0621260:intron 35.0%
GAATGATAGTAGATCTGATC+AGG + chr4_2:73333349-73333368 None:intergenic 35.0%
! TTCGGTGTATGAGAAGAAAA+TGG - chr4_2:73333366-73333385 Msa0621260:intron 35.0%
TCGGTGTATGAGAAGAAAAT+GGG - chr4_2:73333367-73333386 Msa0621260:intron 35.0%
TGTATGAGAAGAAAATGGGT+TGG - chr4_2:73333371-73333390 Msa0621260:intron 35.0%
! GTATAACAACAGTGTTGTTC+TGG - chr4_2:73333429-73333448 Msa0621260:intron 35.0%
! ATCAACAGGTTACCTTCTTT+TGG - chr4_2:73333455-73333474 Msa0621260:intron 35.0%
CTTTGACAATGTCCAAAAGA+AGG + chr4_2:73333470-73333489 None:intergenic 35.0%
! CTTCTTTTGGACATTGTCAA+AGG - chr4_2:73333468-73333487 Msa0621260:intron 35.0%
ACAGTTATACATATGTGGGA+TGG - chr4_2:73333566-73333585 Msa0621260:intron 35.0%
CAGTTATACATATGTGGGAT+GGG - chr4_2:73333567-73333586 Msa0621260:intron 35.0%
GTTAACACTTACTGGATTGA+TGG - chr4_2:73333613-73333632 Msa0621260:intron 35.0%
GTGAGATGCAAAACAGAAAA+CGG - chr4_2:73333682-73333701 Msa0621260:intron 35.0%
AGAAAACGGCATGATTACAT+TGG - chr4_2:73333696-73333715 Msa0621260:intron 35.0%
TCAATGATGTTGTTACACTC+TGG + chr4_2:73333766-73333785 None:intergenic 35.0%
ATGACTTTAAGTGGAGTTGT+GGG + chr4_2:73333790-73333809 None:intergenic 35.0%
TATGACTTTAAGTGGAGTTG+TGG + chr4_2:73333791-73333810 None:intergenic 35.0%
CAACTCCACTTAAAGTCATA+TGG - chr4_2:73333791-73333810 Msa0621260:intron 35.0%
ATTGCCCATATGACTTTAAG+TGG + chr4_2:73333799-73333818 None:intergenic 35.0%
ACTTAAAGTCATATGGGCAA+TGG - chr4_2:73333798-73333817 Msa0621260:intron 35.0%
CTTAAAGTCATATGGGCAAT+GGG - chr4_2:73333799-73333818 Msa0621260:intron 35.0%
AGGTACCTGAAACATTTGAA+GGG - chr4_2:73334012-73334031 Msa0621260:intron 35.0%
TATCACCCTTCAAATGTTTC+AGG + chr4_2:73334020-73334039 None:intergenic 35.0%
CATGTTTACTTGCAATACTC+AGG - chr4_2:73334054-73334073 Msa0621260:intron 35.0%
! TGGAATTGCTGCAATAGTTT+TGG - chr4_2:73334158-73334177 Msa0621260:intron 35.0%
!! TTTTACTGGCATGAAGCATT+TGG - chr4_2:73334320-73334339 Msa0621260:intron 35.0%
! TTTACTGGCATGAAGCATTT+GGG - chr4_2:73334321-73334340 Msa0621260:intron 35.0%
!! TATGCTTTGGAAAACGTTCA+TGG - chr4_2:73334351-73334370 Msa0621260:intron 35.0%
TCACTTGGGCAATGATAATT+TGG - chr4_2:73334376-73334395 Msa0621260:intron 35.0%
GGATATTTGGAAGAGGAAAT+TGG - chr4_2:73334463-73334482 Msa0621260:intron 35.0%
TCCAGTTAGAACCTTTAAAC+AGG - chr4_2:73334583-73334602 Msa0621260:intron 35.0%
! ACCTGTTTAAAGGTTCTAAC+TGG + chr4_2:73334587-73334606 None:intergenic 35.0%
GCATCTATCTACCTGTTTAA+AGG + chr4_2:73334597-73334616 None:intergenic 35.0%
CTGAAAGCTCAGATTAAATG+AGG + chr4_2:73334674-73334693 None:intergenic 35.0%
CTCATTTAATCTGAGCTTTC+AGG - chr4_2:73334672-73334691 Msa0621260:CDS 35.0%
TTCATTAGTTATGAGGGTTG+AGG - chr4_2:73334699-73334718 Msa0621260:CDS 35.0%
!!! AGGCATTTTTGAGGTGTAAA+GGG - chr4_2:73334719-73334738 Msa0621260:CDS 35.0%
!!! TGTTTTTTGTTTTGGTTGGG+GGG + chr4_2:73334876-73334895 None:intergenic 35.0%
CAGAGGTTTACAATCACAAA+AGG + chr4_2:73335118-73335137 None:intergenic 35.0%
! CTTTTGTGATTGTAAACCTC+TGG - chr4_2:73335116-73335135 Msa0621260:CDS 35.0%
!! ACTTTAATACTGATTCCCAG+AGG + chr4_2:73335135-73335154 None:intergenic 35.0%
! CAGATAATTACTAGTGTCGA+GGG + chr4_2:73335164-73335183 None:intergenic 35.0%
ACAGATAATTACTAGTGTCG+AGG + chr4_2:73335165-73335184 None:intergenic 35.0%
AGGTGAGATTGACAAAATCA+TGG - chr4_2:73335199-73335218 Msa0621260:CDS 35.0%
! TTTTTCGTGTTGCCAATTCT+TGG - chr4_2:73335290-73335309 Msa0621260:CDS 35.0%
ACACTTGGCTTCAAAAACTT+AGG - chr4_2:73335370-73335389 Msa0621260:CDS 35.0%
GGCTTCAAAAACTTAGGTTT+CGG - chr4_2:73335376-73335395 Msa0621260:CDS 35.0%
AATATGTTACATCCCTTACC+TGG - chr4_2:73335523-73335542 Msa0621260:CDS 35.0%
AACAAGTTACAGCATTCTCA+AGG - chr4_2:73335700-73335719 Msa0621260:CDS 35.0%
GAATAATGTTGCACAATGTC+AGG + chr4_2:73335756-73335775 None:intergenic 35.0%
! CGATAACTCGGTTAGTTAAT+GGG + chr4_2:73335792-73335811 None:intergenic 35.0%
! ACGATAACTCGGTTAGTTAA+TGG + chr4_2:73335793-73335812 None:intergenic 35.0%
TTAACTCAGCAACGATAACT+CGG + chr4_2:73335804-73335823 None:intergenic 35.0%
TCAACTTTCGAGCAAATGAT+AGG + chr4_2:73335986-73336005 None:intergenic 35.0%
GCCATGTAGTTAATTACTCT+TGG + chr4_2:73336050-73336069 None:intergenic 35.0%
! TCTGTATTGGCATCTCTATT+TGG + chr4_2:73336082-73336101 None:intergenic 35.0%
! TTGCAGTTGGTATGATTCAA+TGG + chr4_2:73336307-73336326 None:intergenic 35.0%
ATTGAATCATACCAACTGCA+AGG - chr4_2:73336306-73336325 Msa0621260:CDS 35.0%
! TGCTGTTTGTACAGTTTGAT+AGG + chr4_2:73336349-73336368 None:intergenic 35.0%
GAGAATGGAGGAAAGAAAAT+TGG + chr4_2:73336470-73336489 None:intergenic 35.0%
! GTCAGACTTAGTACCTATTT+TGG + chr4_2:73336908-73336927 None:intergenic 35.0%
!! GTGCTCTCGTTTTATTCATA+TGG + chr4_2:73336974-73336993 None:intergenic 35.0%
!!! CTTTTTAAGTCCAGATGTGA+TGG + chr4_2:73337061-73337080 None:intergenic 35.0%
! AAACCATCATTAGTCTCAGT+GGG + chr4_2:73337106-73337125 None:intergenic 35.0%
GACATATGTCAAGAGATTCA+AGG + chr4_2:73337156-73337175 None:intergenic 35.0%
TGAAATGAATAGTCATCGGA+GGG + chr4_2:73337259-73337278 None:intergenic 35.0%
TTGAAATGAATAGTCATCGG+AGG + chr4_2:73337260-73337279 None:intergenic 35.0%
ATCGATGAAGGAACTGTTTC+GGG + chr4_2:73331988-73332007 None:intergenic 40.0%
ATCGGATTCGAAATCGATGA+AGG + chr4_2:73332000-73332019 None:intergenic 40.0%
ATGGTTCAACATCAACTCAG+AGG - chr4_2:73332026-73332045 Msa0621260:CDS 40.0%
TGATCCCTGTTCTTTCTGTT+TGG - chr4_2:73332255-73332274 Msa0621260:intron 40.0%
GATCCCTGTTCTTTCTGTTT+GGG - chr4_2:73332256-73332275 Msa0621260:intron 40.0%
AAATATCACCACGAAGAACG+AGG - chr4_2:73332319-73332338 Msa0621260:intron 40.0%
AATATCACCACGAAGAACGA+GGG - chr4_2:73332320-73332339 Msa0621260:intron 40.0%
GAAGGAGAAGGAGAAGAATA+AGG - chr4_2:73332358-73332377 Msa0621260:intron 40.0%
!!! CTAAGGATTTTAGGGTACGT+TGG - chr4_2:73332429-73332448 Msa0621260:intron 40.0%
! ATTGGTTTAGAAGGTGCAAC+TGG - chr4_2:73332482-73332501 Msa0621260:intron 40.0%
! TTGGTTTAGAAGGTGCAACT+GGG - chr4_2:73332483-73332502 Msa0621260:intron 40.0%
! ACTGATTCCGAGCTTATGAT+TGG - chr4_2:73332548-73332567 Msa0621260:intron 40.0%
ATCAGCACCAATCATAAGCT+CGG + chr4_2:73332558-73332577 None:intergenic 40.0%
!!! GTTACGGGTTTTAAGGAAGA+CGG - chr4_2:73332584-73332603 Msa0621260:intron 40.0%
!!! TTACGGGTTTTAAGGAAGAC+GGG - chr4_2:73332585-73332604 Msa0621260:intron 40.0%
GGACCTTCATATATCGAATC+AGG + chr4_2:73332695-73332714 None:intergenic 40.0%
TTCACCAAACCAACTCTATC+CGG + chr4_2:73332716-73332735 None:intergenic 40.0%
TTACCATCAACCTGACTCAA+AGG + chr4_2:73332800-73332819 None:intergenic 40.0%
CGGCTAACATGACTGTTATT+TGG - chr4_2:73332843-73332862 Msa0621260:intron 40.0%
! ATGACTGTTATTTGGGCGTT+GGG - chr4_2:73332851-73332870 Msa0621260:intron 40.0%
!! TGGTTCTGAGGAAGATAATG+CGG + chr4_2:73332905-73332924 None:intergenic 40.0%
CATTATCTTCCTCAGAACCA+TGG - chr4_2:73332905-73332924 Msa0621260:intron 40.0%
TGTAAAGGTCCTTTAGATGC+TGG - chr4_2:73332989-73333008 Msa0621260:intron 40.0%
TGCTGATGCAAAAGTTCCAT+TGG - chr4_2:73333039-73333058 Msa0621260:intron 40.0%
GCTTGTATAGAAAACGTGAC+CGG + chr4_2:73333172-73333191 None:intergenic 40.0%
! GTCACGTTTTCTATACAAGC+CGG - chr4_2:73333172-73333191 Msa0621260:intron 40.0%
! TCACGTTTTCTATACAAGCC+GGG - chr4_2:73333173-73333192 Msa0621260:intron 40.0%
ATTACTACAGATCCCATTGG+TGG - chr4_2:73333214-73333233 Msa0621260:intron 40.0%
TTACTACAGATCCCATTGGT+GGG - chr4_2:73333215-73333234 Msa0621260:intron 40.0%
ACTGAGACAATTTATGCTGG+TGG - chr4_2:73333259-73333278 Msa0621260:intron 40.0%
! TGTTGTTCTGGATGATCAAC+AGG - chr4_2:73333441-73333460 Msa0621260:intron 40.0%
TCAATATCTATTGCTGCTCG+TGG - chr4_2:73333493-73333512 Msa0621260:intron 40.0%
AAGAGTGGTTATCTTGCCAT+AGG - chr4_2:73333523-73333542 Msa0621260:intron 40.0%
GGTTATCTTGCCATAGGATT+TGG - chr4_2:73333529-73333548 Msa0621260:intron 40.0%
TTGGTCGTGTTAACACTTAC+TGG - chr4_2:73333605-73333624 Msa0621260:intron 40.0%
TTCGAGCATACATCTTACAC+AGG - chr4_2:73333645-73333664 Msa0621260:intron 40.0%
ATTGGAATTTACACGTCCCT+TGG - chr4_2:73333714-73333733 Msa0621260:intron 40.0%
CTACTACAAGATGGAACCAA+GGG + chr4_2:73333733-73333752 None:intergenic 40.0%
CTTGGTTCCATCTTGTAGTA+GGG - chr4_2:73333732-73333751 Msa0621260:intron 40.0%
TTGGTTCCATCTTGTAGTAG+GGG - chr4_2:73333733-73333752 Msa0621260:intron 40.0%
! CTTCAAATGTTTCAGGTACC+TGG + chr4_2:73334013-73334032 None:intergenic 40.0%
CAGGTACCTGAAACATTTGA+AGG - chr4_2:73334011-73334030 Msa0621260:intron 40.0%
TGCTGCAATGCCAACAAAAA+TGG + chr4_2:73334298-73334317 None:intergenic 40.0%
TTTGGGAGACAGATATGCTT+TGG - chr4_2:73334338-73334357 Msa0621260:intron 40.0%
AAAACGTTCATGGACTCACT+TGG - chr4_2:73334361-73334380 Msa0621260:intron 40.0%
AAACGTTCATGGACTCACTT+GGG - chr4_2:73334362-73334381 Msa0621260:intron 40.0%
TGTTGGACTCAAGAGATCAA+TGG + chr4_2:73334514-73334533 None:intergenic 40.0%
TGCAGAATGGAGACTTTCAA+TGG + chr4_2:73334634-73334653 None:intergenic 40.0%
!!! GAGGCATTTTTGAGGTGTAA+AGG - chr4_2:73334718-73334737 Msa0621260:CDS 40.0%
CGTATACATGTTCACCAGAT+AGG - chr4_2:73334809-73334828 Msa0621260:CDS 40.0%
TTCTAGGTGTACTTCAGACA+TGG - chr4_2:73334966-73334985 Msa0621260:CDS 40.0%
! ATAATTACTAGTGTCGAGGG+AGG + chr4_2:73335161-73335180 None:intergenic 40.0%
ATCTGTCATGTTCGGATGAT+AGG - chr4_2:73335179-73335198 Msa0621260:CDS 40.0%
! ATGCTTGAGCAGAAGTTGAT+TGG + chr4_2:73335671-73335690 None:intergenic 40.0%
!! CATCTCTATTTGGTGTGCTT+TGG + chr4_2:73336072-73336091 None:intergenic 40.0%
!! TCCAGGACTTGTTACAAGAA+TGG - chr4_2:73336155-73336174 Msa0621260:CDS 40.0%
TCCATTCTTGTAACAAGTCC+TGG + chr4_2:73336159-73336178 None:intergenic 40.0%
ATAACAAGACAAGTCCTGCA+TGG - chr4_2:73336239-73336258 Msa0621260:CDS 40.0%
GTTGGTATGATTCAATGGTC+TGG + chr4_2:73336302-73336321 None:intergenic 40.0%
AGGAGGGCTGTATAATAATG+TGG + chr4_2:73336372-73336391 None:intergenic 40.0%
AAAATAGTCCCTCAGCATTG+TGG + chr4_2:73336400-73336419 None:intergenic 40.0%
GCGTGCAACGTTAATCAAAT+TGG + chr4_2:73336591-73336610 None:intergenic 40.0%
AAACAAGTGACTGAAGTCAG+AGG - chr4_2:73336643-73336662 Msa0621260:CDS 40.0%
CCATTCTTAATAAGCGGGTA+GGG + chr4_2:73336796-73336815 None:intergenic 40.0%
AGGGAGCCATTCTTAATAAG+CGG + chr4_2:73336802-73336821 None:intergenic 40.0%
AGGTACTAAGTCTGACACAA+AGG - chr4_2:73336912-73336931 Msa0621260:CDS 40.0%
!!! GAGGAGTTTAGTTTGGCTTT+TGG + chr4_2:73337030-73337049 None:intergenic 40.0%
! CAAACCATCATTAGTCTCAG+TGG + chr4_2:73337107-73337126 None:intergenic 40.0%
ATGTCAAGAGATTCAAGGTG+AGG + chr4_2:73337151-73337170 None:intergenic 40.0%
CCATCTGGATAATCTTCATC+GGG + chr4_2:73337304-73337323 None:intergenic 40.0%
CCCATCTGGATAATCTTCAT+CGG + chr4_2:73337305-73337324 None:intergenic 40.0%
CCGATGAAGATTATCCAGAT+GGG - chr4_2:73337302-73337321 Msa0621260:CDS 40.0%
! GAACTGTTTCGGGTGCATTT+CGG + chr4_2:73331978-73331997 None:intergenic 45.0%
!! TATCTGGCTCTGATGTGCAT+TGG - chr4_2:73332102-73332121 Msa0621260:CDS 45.0%
! TGGTTTAGAAGGTGCAACTG+GGG - chr4_2:73332484-73332503 Msa0621260:intron 45.0%
GCTCGGAATCAGTAGCATTA+GGG + chr4_2:73332541-73332560 None:intergenic 45.0%
AGCTCGGAATCAGTAGCATT+AGG + chr4_2:73332542-73332561 None:intergenic 45.0%
!! GCTTATGATTGGTGCTGATG+TGG - chr4_2:73332559-73332578 Msa0621260:intron 45.0%
!! TATGATTGGTGCTGATGTGG+CGG - chr4_2:73332562-73332581 Msa0621260:intron 45.0%
AGTGAAGATGGATCTGTCGA+AGG - chr4_2:73332662-73332681 Msa0621260:intron 45.0%
GTGAAGATGGATCTGTCGAA+GGG - chr4_2:73332663-73332682 Msa0621260:intron 45.0%
TGAAGATGGATCTGTCGAAG+GGG - chr4_2:73332664-73332683 Msa0621260:intron 45.0%
TATGAAGGTCCGGATAGAGT+TGG - chr4_2:73332704-73332723 Msa0621260:intron 45.0%
!! CAAGGTTGATATACGGGCAT+AGG - chr4_2:73332741-73332760 Msa0621260:intron 45.0%
ATATACGGGCATAGGAGTGA+TGG - chr4_2:73332749-73332768 Msa0621260:intron 45.0%
TATACGGGCATAGGAGTGAT+GGG - chr4_2:73332750-73332769 Msa0621260:intron 45.0%
!! AGACCTTTGAGTCAGGTTGA+TGG - chr4_2:73332794-73332813 Msa0621260:intron 45.0%
! CATGACTGTTATTTGGGCGT+TGG - chr4_2:73332850-73332869 Msa0621260:intron 45.0%
! TGACTGTTATTTGGGCGTTG+GGG - chr4_2:73332852-73332871 Msa0621260:intron 45.0%
TATCTTCCTCAGAACCATGG+CGG - chr4_2:73332908-73332927 Msa0621260:intron 45.0%
!! GGTCTTCCGTTTGAGACTTT+TGG - chr4_2:73332929-73332948 Msa0621260:intron 45.0%
! GTTCCATTGGTTGTTTCCAC+TGG - chr4_2:73333052-73333071 Msa0621260:intron 45.0%
! ATTGGTTGTTTCCACTGGTC+CGG - chr4_2:73333057-73333076 Msa0621260:intron 45.0%
AGAATCTTGGCAGGATTTGG+CGG + chr4_2:73333100-73333119 None:intergenic 45.0%
ATAAAGCGCAACATCATGCC+CGG + chr4_2:73333194-73333213 None:intergenic 45.0%
CTCAGTTAGATTCCTCAGTG+TGG + chr4_2:73333245-73333264 None:intergenic 45.0%
AATTTATGCTGGTGGTCCTG+AGG - chr4_2:73333267-73333286 Msa0621260:intron 45.0%
! TAGTCCCACGGAACTAGTTT+GGG - chr4_2:73333306-73333325 Msa0621260:intron 45.0%
! AACTAGTTTGGGCTCCTGAT+AGG - chr4_2:73333317-73333336 Msa0621260:intron 45.0%
!! TGATCAGGAGTGTTCCTATC+AGG + chr4_2:73333334-73333353 None:intergenic 45.0%
!! GAAGAAAATGGGTTGGAGAG+TGG - chr4_2:73333378-73333397 Msa0621260:intron 45.0%
CATTCCACTGCCAAATCCTA+TGG + chr4_2:73333542-73333561 None:intergenic 45.0%
!! TGGGTTGATGACAATGGTGT+TGG - chr4_2:73333586-73333605 Msa0621260:intron 45.0%
! CACTTACTGGATTGATGGAC+AGG - chr4_2:73333618-73333637 Msa0621260:intron 45.0%
CCTACTACAAGATGGAACCA+AGG + chr4_2:73333734-73333753 None:intergenic 45.0%
CCTTGGTTCCATCTTGTAGT+AGG - chr4_2:73333731-73333750 Msa0621260:intron 45.0%
! CTTTTGCCCCTACTACAAGA+TGG + chr4_2:73333742-73333761 None:intergenic 45.0%
CATCTTGTAGTAGGGGCAAA+AGG - chr4_2:73333740-73333759 Msa0621260:intron 45.0%
TATGGGCAATGGGTAGTAGA+TGG - chr4_2:73333809-73333828 Msa0621260:intron 45.0%
CGCATCAGCTGAACAAGTAT+AGG + chr4_2:73333886-73333905 None:intergenic 45.0%
ATACTTGTTCAGCTGATGCG+TGG - chr4_2:73333886-73333905 Msa0621260:intron 45.0%
!! GCAGGATTTGCTTCCAGTTT+TGG - chr4_2:73333924-73333943 Msa0621260:intron 45.0%
AACCAGCTAATGCATTCCTC+AGG - chr4_2:73334190-73334209 Msa0621260:intron 45.0%
!!! TCCCCATTTGATGGTTTTGG+GGG + chr4_2:73334216-73334235 None:intergenic 45.0%
!! CTCCCCATTTGATGGTTTTG+GGG + chr4_2:73334217-73334236 None:intergenic 45.0%
!! GCTCCCCATTTGATGGTTTT+GGG + chr4_2:73334218-73334237 None:intergenic 45.0%
!! TGCTCCCCATTTGATGGTTT+TGG + chr4_2:73334219-73334238 None:intergenic 45.0%
!!! GGCAGATCTGCCATTTTTGT+TGG - chr4_2:73334285-73334304 Msa0621260:intron 45.0%
!! GGCATTGCAGCACTTTTTAC+TGG - chr4_2:73334306-73334325 Msa0621260:intron 45.0%
AAATTGGGTGCTTGGCAATG+AGG - chr4_2:73334479-73334498 Msa0621260:intron 45.0%
TTCACAGGCTTCTGCAAGAA+TGG - chr4_2:73334557-73334576 Msa0621260:intron 45.0%
! CTCCATTCTGCAGCAGATTT+TGG - chr4_2:73334642-73334661 Msa0621260:intron 45.0%
CACCAAAATCTGCTGCAGAA+TGG + chr4_2:73334647-73334666 None:intergenic 45.0%
!! TGAGGGTTGAGGCATTTTTG+AGG - chr4_2:73334710-73334729 Msa0621260:CDS 45.0%
AGGTGTACTTCAGACATGGA+AGG - chr4_2:73334970-73334989 Msa0621260:CDS 45.0%
GGTGTACTTCAGACATGGAA+GGG - chr4_2:73334971-73334990 Msa0621260:CDS 45.0%
TGCTAGAATCTGCAGGGTAA+GGG + chr4_2:73335351-73335370 None:intergenic 45.0%
CAAGTGTGCTAGAATCTGCA+GGG + chr4_2:73335357-73335376 None:intergenic 45.0%
TTAGATGCAGCTCCAGGTAA+GGG + chr4_2:73335538-73335557 None:intergenic 45.0%
TCACACCTCATCGAATGTTG+AGG - chr4_2:73335833-73335852 Msa0621260:CDS 45.0%
ATGGTCCTCAACATTCGATG+AGG + chr4_2:73335841-73335860 None:intergenic 45.0%
AAGACAGACAATGCATCTCC+TGG - chr4_2:73336114-73336133 Msa0621260:CDS 45.0%
!! AGTAGCTTTGTGGTGTATCC+AGG + chr4_2:73336135-73336154 None:intergenic 45.0%
TACACCACAAAGCTACTTCC+AGG - chr4_2:73336138-73336157 Msa0621260:CDS 45.0%
! AAGTCCTGGAAGTAGCTTTG+TGG + chr4_2:73336145-73336164 None:intergenic 45.0%
! GAATGTGTTGGTGTGTGTTG+CGG + chr4_2:73336276-73336295 None:intergenic 45.0%
ATGGTCTGGATCGAATGTGT+TGG + chr4_2:73336288-73336307 None:intergenic 45.0%
AAGGTCGGAGAAGAAGAGAA+TGG + chr4_2:73336485-73336504 None:intergenic 45.0%
GGGCTTGCAGAACATTTAAG+AGG + chr4_2:73336776-73336795 None:intergenic 45.0%
CCCTACCCGCTTATTAAGAA+TGG - chr4_2:73336793-73336812 Msa0621260:CDS 45.0%
GCCATTCTTAATAAGCGGGT+AGG + chr4_2:73336797-73336816 None:intergenic 45.0%
GGGAGCCATTCTTAATAAGC+GGG + chr4_2:73336801-73336820 None:intergenic 45.0%
AGTTGTCGAGCTTCTTGGAA+GGG + chr4_2:73336821-73336840 None:intergenic 45.0%
GATGCTCGAGGAGTTTAGTT+TGG + chr4_2:73337037-73337056 None:intergenic 45.0%
GGACTTAAAAAGAGACCACC+TGG - chr4_2:73337069-73337088 Msa0621260:CDS 45.0%
CTTAAAAAGAGACCACCTGG+TGG - chr4_2:73337072-73337091 Msa0621260:CDS 45.0%
GATCCCACTGAGACTAATGA+TGG - chr4_2:73337100-73337119 Msa0621260:CDS 45.0%
! GGTTTGCTTGCTCTTCTTGA+TGG - chr4_2:73337121-73337140 Msa0621260:CDS 45.0%
TAGTCATCGGAGGGATCATA+TGG + chr4_2:73337250-73337269 None:intergenic 45.0%
CCCGATGAAGATTATCCAGA+TGG - chr4_2:73337301-73337320 Msa0621260:CDS 45.0%
! TCTATGTCTGAGATCCCATC+TGG + chr4_2:73337319-73337338 None:intergenic 45.0%
!!! AATTATTTGATTTTAAAAAA+CGG + chr4_2:73335268-73335287 None:intergenic 5.0%
!!! ATTTTATTTTATTTTTTGAA+AGG - chr4_2:73335432-73335451 Msa0621260:CDS 5.0%
!! AAAATCTAATTAAATTATTA+AGG + chr4_2:73336751-73336770 None:intergenic 5.0%
!! TGGCTCTGATGTGCATTGGT+GGG - chr4_2:73332106-73332125 Msa0621260:CDS 50.0%
AGATGGGAAGGAGAAGGAGA+AGG - chr4_2:73332346-73332365 Msa0621260:intron 50.0%
! TGTGGCGGTTACGGGTTTTA+AGG - chr4_2:73332577-73332596 Msa0621260:intron 50.0%
! AGGTCCGGATAGAGTTGGTT+TGG - chr4_2:73332709-73332728 Msa0621260:intron 50.0%
ATACGGGCATAGGAGTGATG+GGG - chr4_2:73332751-73332770 Msa0621260:intron 50.0%
! TAGGAGTGATGGGGTTTCGT+TGG - chr4_2:73332760-73332779 Msa0621260:intron 50.0%
GGACCAGTGGAAACAACCAA+TGG + chr4_2:73333058-73333077 None:intergenic 50.0%
GGGTTAGGGTAATGCAAAGC+CGG + chr4_2:73333079-73333098 None:intergenic 50.0%
GAATCTTGGCAGGATTTGGC+GGG + chr4_2:73333099-73333118 None:intergenic 50.0%
CCTCTTTCCACTCTCAACAC+AGG + chr4_2:73333145-73333164 None:intergenic 50.0%
CCTGTGTTGAGAGTGGAAAG+AGG - chr4_2:73333142-73333161 Msa0621260:intron 50.0%
AGTGTGGCATTCCCACCAAT+GGG + chr4_2:73333229-73333248 None:intergenic 50.0%
CTAGTCCCACGGAACTAGTT+TGG - chr4_2:73333305-73333324 Msa0621260:intron 50.0%
!! GAAAATGGGTTGGAGAGTGG+AGG - chr4_2:73333381-73333400 Msa0621260:intron 50.0%
GCTCGTGGTGAGAAAAAGAG+TGG - chr4_2:73333508-73333527 Msa0621260:intron 50.0%
CTTGCCATAGGATTTGGCAG+TGG - chr4_2:73333535-73333554 Msa0621260:intron 50.0%
!! GTGGGATGGGTTGATGACAA+TGG - chr4_2:73333580-73333599 Msa0621260:intron 50.0%
AAACCATGCACGGCCAAAAC+TGG + chr4_2:73333940-73333959 None:intergenic 50.0%
!! CTTGCTTCCTGGAGGTATCT+TGG - chr4_2:73333984-73334003 Msa0621260:intron 50.0%
AGGCCCCCAAAACCATCAAA+TGG - chr4_2:73334210-73334229 Msa0621260:intron 50.0%
GGCCCCCAAAACCATCAAAT+GGG - chr4_2:73334211-73334230 Msa0621260:intron 50.0%
GCCCCCAAAACCATCAAATG+GGG - chr4_2:73334212-73334231 Msa0621260:intron 50.0%
GGGAGCAGCCAACGTTTAAA+AGG - chr4_2:73334232-73334251 Msa0621260:intron 50.0%
CGGGATCGGATATTTGGAAG+AGG - chr4_2:73334456-73334475 Msa0621260:intron 50.0%
GGAAGAGGAAATTGGGTGCT+TGG - chr4_2:73334471-73334490 Msa0621260:intron 50.0%
GTGCTAGAATCTGCAGGGTA+AGG + chr4_2:73335352-73335371 None:intergenic 50.0%
CCAAGTGTGCTAGAATCTGC+AGG + chr4_2:73335358-73335377 None:intergenic 50.0%
CCTGCAGATTCTAGCACACT+TGG - chr4_2:73335355-73335374 Msa0621260:CDS 50.0%
GTTAGATGCAGCTCCAGGTA+AGG + chr4_2:73335539-73335558 None:intergenic 50.0%
GCATTGTTAGATGCAGCTCC+AGG + chr4_2:73335544-73335563 None:intergenic 50.0%
TACCAACTGCAAGGAACAGC+AGG - chr4_2:73336315-73336334 Msa0621260:CDS 50.0%
TTCCTGCTGTTCCTTGCAGT+TGG + chr4_2:73336320-73336339 None:intergenic 50.0%
TAGTCCCTCAGCATTGTGGT+GGG + chr4_2:73336396-73336415 None:intergenic 50.0%
ATAGTCCCTCAGCATTGTGG+TGG + chr4_2:73336397-73336416 None:intergenic 50.0%
GTCGGAGAAGAAGAGAATGG+AGG + chr4_2:73336482-73336501 None:intergenic 50.0%
GAGTTGTCGAGCTTCTTGGA+AGG + chr4_2:73336822-73336841 None:intergenic 50.0%
CTCAGAGTTGTCGAGCTTCT+TGG + chr4_2:73336826-73336845 None:intergenic 50.0%
! AGATGTGATGGAGATGCTCG+AGG + chr4_2:73337049-73337068 None:intergenic 50.0%
TCGAGCATCTCCATCACATC+TGG - chr4_2:73337048-73337067 Msa0621260:CDS 50.0%
! TTTCGGGTGCATTTCGGAGC+AGG + chr4_2:73331972-73331991 None:intergenic 55.0%
!! CTGGCTCTGATGTGCATTGG+TGG - chr4_2:73332105-73332124 Msa0621260:CDS 55.0%
! GGCTCTGATGTGCATTGGTG+GGG - chr4_2:73332107-73332126 Msa0621260:CDS 55.0%
ATCACCACGAAGAACGAGGG+AGG - chr4_2:73332323-73332342 Msa0621260:intron 55.0%
ATCTCCTCCCTCGTTCTTCG+TGG + chr4_2:73332330-73332349 None:intergenic 55.0%
ACGAAGAACGAGGGAGGAGA+TGG - chr4_2:73332329-73332348 Msa0621260:intron 55.0%
CGAAGAACGAGGGAGGAGAT+GGG - chr4_2:73332330-73332349 Msa0621260:intron 55.0%
!! TGGTGCTGATGTGGCGGTTA+CGG - chr4_2:73332568-73332587 Msa0621260:intron 55.0%
!! GGAAGACGGGTTGCCATTTG+TGG - chr4_2:73332598-73332617 Msa0621260:intron 55.0%
GTTGGGGAAGATGAGAGCTC+CGG - chr4_2:73332868-73332887 Msa0621260:intron 55.0%
TCTCAAACGGAAGACCGCCA+TGG + chr4_2:73332925-73332944 None:intergenic 55.0%
GTAATGCAAAGCCGGACCAG+TGG + chr4_2:73333071-73333090 None:intergenic 55.0%
!! TGGCAGGATTTGGCGGGTTA+GGG + chr4_2:73333093-73333112 None:intergenic 55.0%
!! TTGGCAGGATTTGGCGGGTT+AGG + chr4_2:73333094-73333113 None:intergenic 55.0%
GGAAGCTCCTGTGTTGAGAG+TGG - chr4_2:73333135-73333154 Msa0621260:intron 55.0%
! GAGAGTGGAAAGAGGAGTGC+CGG - chr4_2:73333150-73333169 Msa0621260:intron 55.0%
CAGTGTGGCATTCCCACCAA+TGG + chr4_2:73333230-73333249 None:intergenic 55.0%
TTGGTGGGAATGCCACACTG+AGG - chr4_2:73333230-73333249 Msa0621260:intron 55.0%
TCCTGAGGCTCATGGTGTTC+AGG - chr4_2:73333282-73333301 Msa0621260:intron 55.0%
! TGGTGTTCAGGCTAGTCCCA+CGG - chr4_2:73333294-73333313 Msa0621260:intron 55.0%
GGAGCCCAAACTAGTTCCGT+GGG + chr4_2:73333313-73333332 None:intergenic 55.0%
AGGAGCCCAAACTAGTTCCG+TGG + chr4_2:73333314-73333333 None:intergenic 55.0%
TGGAGAGTGGAGGTTGTGGA+CGG - chr4_2:73333391-73333410 Msa0621260:intron 55.0%
! TGGTTCTGCAGAAGCAGAGC+AGG - chr4_2:73333906-73333925 Msa0621260:intron 55.0%
!! CTTCCAGTTTTGGCCGTGCA+TGG - chr4_2:73333934-73333953 Msa0621260:intron 55.0%
! GCATGGGGTATCTTGCTTCC+TGG - chr4_2:73333973-73333992 Msa0621260:intron 55.0%
! TGGGGTATCTTGCTTCCTGG+AGG - chr4_2:73333976-73333995 Msa0621260:intron 55.0%
TTTGCGGTTGCTGAGCTTCG+CGG - chr4_2:73334105-73334124 Msa0621260:CDS 55.0%
GGCCTGAGGAATGCATTAGC+TGG + chr4_2:73334195-73334214 None:intergenic 55.0%
!!! TTGATGGTTTTGGGGGCCTG+AGG + chr4_2:73334209-73334228 None:intergenic 55.0%
GTTGGCTGCTCCCCATTTGA+TGG + chr4_2:73334225-73334244 None:intergenic 55.0%
CGAGCACGGGATCGGATATT+TGG - chr4_2:73334450-73334469 Msa0621260:intron 55.0%
!! CGGCTTTGGAGTTTCCATGC+AGG + chr4_2:73336256-73336275 None:intergenic 55.0%
GTTGGTGTGTGTTGCGGCTT+TGG + chr4_2:73336270-73336289 None:intergenic 55.0%
AGTCCCTCAGCATTGTGGTG+GGG + chr4_2:73336395-73336414 None:intergenic 55.0%
GAACGAGGGAGGAGATGGGA+AGG - chr4_2:73332334-73332353 Msa0621260:intron 60.0%
GGGAGGAGATGGGAAGGAGA+AGG - chr4_2:73332340-73332359 Msa0621260:intron 60.0%
!! GGTGCTGATGTGGCGGTTAC+GGG - chr4_2:73332569-73332588 Msa0621260:intron 60.0%
! GGAAGACCGCCATGGTTCTG+AGG + chr4_2:73332917-73332936 None:intergenic 60.0%
GCCTGAACACCATGAGCCTC+AGG + chr4_2:73333286-73333305 None:intergenic 60.0%
GGGTTGGAGAGTGGAGGTTG+TGG - chr4_2:73333387-73333406 Msa0621260:intron 60.0%
GGAGAGTGGAGGTTGTGGAC+GGG - chr4_2:73333392-73333411 Msa0621260:intron 60.0%
GAGAGTGGAGGTTGTGGACG+GGG - chr4_2:73333393-73333412 Msa0621260:intron 60.0%
AGAGTGGAGGTTGTGGACGG+GGG - chr4_2:73333394-73333413 Msa0621260:intron 60.0%
CTGGCTGCCAAGATACCTCC+AGG + chr4_2:73333994-73334013 None:intergenic 60.0%
!! CTGGAGGTATCTTGGCAGCC+AGG - chr4_2:73333992-73334011 Msa0621260:intron 60.0%
AGAAGCAGCGAGCACGGGAT+CGG - chr4_2:73334442-73334461 Msa0621260:intron 60.0%
! CAGCATTGTGGTGGGGAGGA+GGG + chr4_2:73336388-73336407 None:intergenic 60.0%
! TCAGCATTGTGGTGGGGAGG+AGG + chr4_2:73336389-73336408 None:intergenic 60.0%
TCCTCCCCACCACAATGCTG+AGG - chr4_2:73336388-73336407 Msa0621260:CDS 60.0%
CCTCCCCACCACAATGCTGA+GGG - chr4_2:73336389-73336408 Msa0621260:CDS 60.0%
CTACGGGAGAGTTCGCCAAG+AGG + chr4_2:73336873-73336892 None:intergenic 60.0%
TGGGATCATGTGCCACCAGG+TGG + chr4_2:73337087-73337106 None:intergenic 60.0%
CAGTGGGATCATGTGCCACC+AGG + chr4_2:73337090-73337109 None:intergenic 60.0%
GCTGGTGGTCCTGAGGCTCA+TGG - chr4_2:73333274-73333293 Msa0621260:intron 65.0%
ACCGCGAGAAGCAGCGAGCA+CGG - chr4_2:73334436-73334455 Msa0621260:intron 65.0%
! CCCTCAGCATTGTGGTGGGG+AGG + chr4_2:73336392-73336411 None:intergenic 65.0%
CCCGTGCTCGCTGCTTCTCG+CGG + chr4_2:73334440-73334459 None:intergenic 70.0%
CCGCGAGAAGCAGCGAGCAC+GGG - chr4_2:73334437-73334456 Msa0621260:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 73331912 73337354 73331912 ID=Msa0621260;Name=Msa0621260
chr4_2 mRNA 73331912 73337354 73331912 ID=Msa0621260-mRNA-1;Parent=Msa0621260;Name=Msa0621260-mRNA-1;_AED=0.03;_eAED=0.10;_QI=0|0|0|0.66|1|1|3|0|1024
chr4_2 exon 73334662 73337354 73334662 ID=Msa0621260-mRNA-1:exon:22005;Parent=Msa0621260-mRNA-1
chr4_2 exon 73334066 73334173 73334066 ID=Msa0621260-mRNA-1:exon:22004;Parent=Msa0621260-mRNA-1
chr4_2 exon 73331912 73332185 73331912 ID=Msa0621260-mRNA-1:exon:22003;Parent=Msa0621260-mRNA-1
chr4_2 CDS 73334662 73337354 73334662 ID=Msa0621260-mRNA-1:cds;Parent=Msa0621260-mRNA-1
chr4_2 CDS 73334066 73334173 73334066 ID=Msa0621260-mRNA-1:cds;Parent=Msa0621260-mRNA-1
chr4_2 CDS 73331912 73332185 73331912 ID=Msa0621260-mRNA-1:cds;Parent=Msa0621260-mRNA-1
Gene Sequence

>Msa0621260

ATGCTTCGTGAAACTTTATTGATTTTCCTATCCTTGTTCTTTTTCGGATATGCAGATCCTGCTCCGAAATGCACCCGAAACAGTTCCTTCATCGATTTCGAATCCGATTTCATTATGGTTCAACATCAACTCAGAGGCCATTTCAAAATCATCGATGATTGCTCTTTTAGGGTTTCTCAATTTGATATGTTATCTGGCTCTGATGTGCATTGGTGGGGTGCAATTGATACAGATTTTGATAATTTCACCAATGGAGGATTCATTGTTTCAGATCATAAACTTAATCATACTTACGCCAATTTAACATTCGTTGTTCAATTGATGAAGAATGTTACTTGGGATATGATCCCTGTTCTTTCTGTTTGGGATATTCCAACTGCATCAAATTTTGGTCATGTTTTGATTCAAAATATCACCACGAAGAACGAGGGAGGAGATGGGAAGGAGAAGGAGAAGGAGAAGAATAAGGTAAGTGTTCATACTGAGCCAACTATGTTTGATAATTGTAAGGTTTTGTCTAAGGATTTTAGGGTACGTTGGAGTTTGAATTTGAAAGAGGATTCAATTGAGATTGGTTTAGAAGGTGCAACTGGGGTTATGAATTACATGGCTTTTGGTTGGGCTAACCCTAATGCTACTGATTCCGAGCTTATGATTGGTGCTGATGTGGCGGTTACGGGTTTTAAGGAAGACGGGTTGCCATTTGTGGATGATTTTTTTATTACTAAGTATAGTGAGTGTGTGAAGAATAGTGAAGATGGATCTGTCGAAGGGGTTTGTCCTGATTCGATATATGAAGGTCCGGATAGAGTTGGTTTGGTGAATGATACAAGGTTGATATACGGGCATAGGAGTGATGGGGTTTCGTTGGTTAGATATAAGAGACCTTTGAGTCAGGTTGATGGTAAATATGATCAATCTGTTGTTCAATCGGCTAACATGACTGTTATTTGGGCGTTGGGGAAGATGAGAGCTCCGGATACTGTTTTACCGCATTATCTTCCTCAGAACCATGGCGGTCTTCCGTTTGAGACTTTTGGTCATTTGGTTCTCAATGTTTCTCAGAATGTGAATGATTGTAAAGGTCCTTTAGATGCTGGTGATAAAGAGGATCAAGATGTGATCATTGCTGATGCAAAAGTTCCATTGGTTGTTTCCACTGGTCCGGCTTTGCATTACCCTAACCCGCCAAATCCTGCCAAGATTCTTTACATCAACAAAAAGGAAGCTCCTGTGTTGAGAGTGGAAAGAGGAGTGCCGGTCACGTTTTCTATACAAGCCGGGCATGATGTTGCGCTTTATATTACTACAGATCCCATTGGTGGGAATGCCACACTGAGGAATCTAACTGAGACAATTTATGCTGGTGGTCCTGAGGCTCATGGTGTTCAGGCTAGTCCCACGGAACTAGTTTGGGCTCCTGATAGGAACACTCCTGATCAGATCTACTATCATTCGGTGTATGAGAAGAAAATGGGTTGGAGAGTGGAGGTTGTGGACGGGGGTCTGTCCGACATGTATAACAACAGTGTTGTTCTGGATGATCAACAGGTTACCTTCTTTTGGACATTGTCAAAGGATTCAATATCTATTGCTGCTCGTGGTGAGAAAAAGAGTGGTTATCTTGCCATAGGATTTGGCAGTGGAATGATAAACAGTTATACATATGTGGGATGGGTTGATGACAATGGTGTTGGTCGTGTTAACACTTACTGGATTGATGGACAGGATGCTTCGAGCATACATCTTACACAGGAGAATCTCACACATGTGAGATGCAAAACAGAAAACGGCATGATTACATTGGAATTTACACGTCCCTTGGTTCCATCTTGTAGTAGGGGCAAAAGGCCAGAGTGTAACAACATCATTGATCCCACAACTCCACTTAAAGTCATATGGGCAATGGGTAGTAGATGGAGTAATGAACATCTTACTGAAAGGAATATGCATACTGTAACTAGTAGCAGACCTATACTTGTTCAGCTGATGCGTGGTTCTGCAGAAGCAGAGCAGGATTTGCTTCCAGTTTTGGCCGTGCATGGTTTTATGATGTTTCTTGCATGGGGTATCTTGCTTCCTGGAGGTATCTTGGCAGCCAGGTACCTGAAACATTTGAAGGGTGATAATTGGTACAAAATTCATGTTTACTTGCAATACTCAGGGTTAGCAATAATTTTTCTTGCACTTCTTTTTGCGGTTGCTGAGCTTCGCGGTTTTCATGTTAGCTCAACACATGTTAAATTTGGAATTGCTGCAATAGTTTTGGCTTGCATACAACCAGCTAATGCATTCCTCAGGCCCCCAAAACCATCAAATGGGGAGCAGCCAACGTTTAAAAGGATAATTTGGGAATATTTGCACATAATTGTTGGCAGATCTGCCATTTTTGTTGGCATTGCAGCACTTTTTACTGGCATGAAGCATTTGGGAGACAGATATGCTTTGGAAAACGTTCATGGACTCACTTGGGCAATGATAATTTGGTTCTTAGTAGGTGCATTGAGTATTGCTTATTTCGAATACCGCGAGAAGCAGCGAGCACGGGATCGGATATTTGGAAGAGGAAATTGGGTGCTTGGCAATGAGGAAGATGATTCCATTGATCTCTTGAGTCCAACAATTCCACTTTCAACAAATAAAGATTCACAGGCTTCTGCAAGAATGGAAGTCCAGTTAGAACCTTTAAACAGTTTTGGTCATGGAACTGTTAAACCTTTTGTGATTGTAAACCTCTGGGAATCAGTATTAAAGTCATCCTCCCTCGACACTAGTAATTATCTGTCATGTTCGGATGATAGAGACCACCTGGTGGCACATGATCCCACTGAGACTAATGATGGTTTGCTTGCTCTTCTTGATGGTTGTCCTCACCTTGAATCTCTTGACATATGTCTGCGTCTCAATGTTAATTTGATAGAAATTTTGGAGAAGAGATGTAAAGAACAAATCAAGTATTTATTGCTTCCATATGATCCCTCCGATGACTATTCATTTCAAGCTGAATGTGATTATGGATCACCCGATGAAGATTATCCAGATGGGATCTCAGACATAGAGCTTTTGTATGACTGA
Protein sequence

>Msa0621260

MLRETLLIFLSLFFFGYADPAPKCTRNSSFIDFESDFIMVQHQLRGHFKIIDDCSFRVSQFDMLSGSDVHWWGAIDTDFDNFTNGGFIVSDHKLNHTYANLTFVVQLMKNVTWDMIPVLSVWDIPTASNFGHVLIQNITTKNEGGDGKEKEKEKNKVSVHTEPTMFDNCKVLSKDFRVRWSLNLKEDSIEIGLEGATGVMNYMAFGWANPNATDSELMIGADVAVTGFKEDGLPFVDDFFITKYSECVKNSEDGSVEGVCPDSIYEGPDRVGLVNDTRLIYGHRSDGVSLVRYKRPLSQVDGKYDQSVVQSANMTVIWALGKMRAPDTVLPHYLPQNHGGLPFETFGHLVLNVSQNVNDCKGPLDAGDKEDQDVIIADAKVPLVVSTGPALHYPNPPNPAKILYINKKEAPVLRVERGVPVTFSIQAGHDVALYITTDPIGGNATLRNLTETIYAGGPEAHGVQASPTELVWAPDRNTPDQIYYHSVYEKKMGWRVEVVDGGLSDMYNNSVVLDDQQVTFFWTLSKDSISIAARGEKKSGYLAIGFGSGMINSYTYVGWVDDNGVGRVNTYWIDGQDASSIHLTQENLTHVRCKTENGMITLEFTRPLVPSCSRGKRPECNNIIDPTTPLKVIWAMGSRWSNEHLTERNMHTVTSSRPILVQLMRGSAEAEQDLLPVLAVHGFMMFLAWGILLPGGILAARYLKHLKGDNWYKIHVYLQYSGLAIIFLALLFAVAELRGFHVSSTHVKFGIAAIVLACIQPANAFLRPPKPSNGEQPTFKRIIWEYLHIIVGRSAIFVGIAALFTGMKHLGDRYALENVHGLTWAMIIWFLVGALSIAYFEYREKQRARDRIFGRGNWVLGNEEDDSIDLLSPTIPLSTNKDSQASARMEVQLEPLNSFGHGTVKPFVIVNLWESVLKSSSLDTSNYLSCSDDRDHLVAHDPTETNDGLLALLDGCPHLESLDICLRLNVNLIEILEKRCKEQIKYLLLPYDPSDDYSFQAECDYGSPDEDYPDGISDIELLYD*