AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0236770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0236770 MtrunA17_Chr2g0285681 99.313 728 3 1 1 728 39 764 0.0 1502
Msa0236770 MtrunA17_Chr2g0285691 97.826 92 2 0 767 858 1 92 3.60e-57 190
Msa0236770 MtrunA17_Chr7g0275621 24.629 337 216 9 482 806 74 384 1.28e-13 73.9
Msa0236770 MtrunA17_Chr8g0347591 24.232 293 197 8 485 773 79 350 1.17e-12 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0236770 AT5G54830.1 65.207 868 287 6 1 856 42 906 0.0 1187

Find 233 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACGTTTAAAAGGATAATT+TGG 0.111755 2_2:-9781245 Msa0236770:CDS
ATTCCAACTGCATCAAATTT+TGG 0.141719 2_2:-9783199 Msa0236770:CDS
AGCTCAACACATGTTAAATT+TGG 0.155830 2_2:-9781348 Msa0236770:CDS
CGGCTAACATGACTGTTATT+TGG 0.161465 2_2:-9782643 Msa0236770:CDS
GCATCTATCTACCTGTTTAA+AGG 0.181231 2_2:+9780892 None:intergenic
GGATATTTGGAAGAGGAAAT+TGG 0.191249 2_2:-9781023 Msa0236770:CDS
TCACTTGGGCAATGATAATT+TGG 0.204909 2_2:-9781110 Msa0236770:CDS
TTGAACAACGAATGTTAAAT+TGG 0.224862 2_2:+9783273 None:intergenic
GCAGGATTTGCTTCCAGTTT+TGG 0.242070 2_2:-9781562 Msa0236770:CDS
ATCAACAGGTTACCTTCTTT+TGG 0.247908 2_2:-9782031 Msa0236770:CDS
CGAGCACGGGATCGGATATT+TGG 0.251463 2_2:-9781036 Msa0236770:CDS
AACATTTGAAGGGTGATAAT+TGG 0.254622 2_2:-9781464 Msa0236770:CDS
TCTCAATTTGATATGTTATC+TGG 0.254696 2_2:-9783394 Msa0236770:CDS
TTCGGTGTATGAGAAGAAAA+TGG 0.264953 2_2:-9782120 Msa0236770:CDS
TGATCCCTGTTCTTTCTGTT+TGG 0.265660 2_2:-9783225 Msa0236770:CDS
TATCACCCTTCAAATGTTTC+AGG 0.272420 2_2:+9781469 None:intergenic
GGTCTTCCGTTTGAGACTTT+TGG 0.272852 2_2:-9782557 Msa0236770:CDS
GATCCCTGTTCTTTCTGTTT+GGG 0.275825 2_2:-9783224 Msa0236770:CDS
TTGGCAGGATTTGGCGGGTT+AGG 0.288091 2_2:+9782395 None:intergenic
TAAAGAATCTTGGCAGGATT+TGG 0.299021 2_2:+9782386 None:intergenic
TGGAATTGCTGCAATAGTTT+TGG 0.303405 2_2:-9781328 Msa0236770:CDS
CCTTGGTTCCATCTTGTAGT+AGG 0.312930 2_2:-9781755 Msa0236770:CDS
GCATGGGGTATCTTGCTTCC+TGG 0.316197 2_2:-9781513 Msa0236770:CDS
CTTGCTTCCTGGAGGTATCT+TGG 0.318098 2_2:-9781502 Msa0236770:CDS
CTAGTCCCACGGAACTAGTT+TGG 0.323814 2_2:-9782181 Msa0236770:CDS
GTTATGAATTACATGGCTTT+TGG 0.328103 2_2:-9782980 Msa0236770:CDS
TGGTGCTGATGTGGCGGTTA+CGG 0.329797 2_2:-9782918 Msa0236770:CDS
GGTTATCTTGCCATAGGATT+TGG 0.331663 2_2:-9781957 Msa0236770:CDS
ACCTGTTTAAAGGTTCTAAC+TGG 0.335200 2_2:+9780902 None:intergenic
TCAATTGAGATTGGTTTAGA+AGG 0.336814 2_2:-9783013 Msa0236770:CDS
GTTAACACTTACTGGATTGA+TGG 0.338446 2_2:-9781873 Msa0236770:CDS
AAACCATGCACGGCCAAAAC+TGG 0.343302 2_2:+9781549 None:intergenic
GATTCTTTACATCAACAAAA+AGG 0.346577 2_2:-9782372 Msa0236770:CDS
ATGATAATTTGGTTCTTAGT+AGG 0.347365 2_2:-9781099 Msa0236770:CDS
GGTGCTGATGTGGCGGTTAC+GGG 0.348511 2_2:-9782917 Msa0236770:CDS
GGGAGCAGCCAACGTTTAAA+AGG 0.348957 2_2:-9781254 Msa0236770:CDS
TCCTGAGGCTCATGGTGTTC+AGG 0.352665 2_2:-9782204 Msa0236770:CDS
GGCTAACATGACTGTTATTT+GGG 0.359054 2_2:-9782642 Msa0236770:CDS
GGAGAGTGGAGGTTGTGGAC+GGG 0.363911 2_2:-9782094 Msa0236770:CDS
GAAGGAGAAGGAGAAGAATA+AGG 0.367053 2_2:-9783128 Msa0236770:CDS
AATGATACAAGGTTGATATA+CGG 0.367078 2_2:-9782752 Msa0236770:CDS
TGGCAGGATTTGGCGGGTTA+GGG 0.367973 2_2:+9782396 None:intergenic
TTGGTCGTGTTAACACTTAC+TGG 0.371151 2_2:-9781881 Msa0236770:CDS
TTTGTTGATGTAAAGAATCT+TGG 0.376375 2_2:+9782376 None:intergenic
ATTGGTTTAGAAGGTGCAAC+TGG 0.377218 2_2:-9783004 Msa0236770:CDS
ATGACTGTTATTTGGGCGTT+GGG 0.381712 2_2:-9782635 Msa0236770:CDS
AGCTCGGAATCAGTAGCATT+AGG 0.382038 2_2:+9782947 None:intergenic
CAACTCCACTTAAAGTCATA+TGG 0.387100 2_2:-9781695 Msa0236770:CDS
TATGCTTTGGAAAACGTTCA+TGG 0.388460 2_2:-9781135 Msa0236770:CDS
TGATCAGGAGTGTTCCTATC+AGG 0.389061 2_2:+9782155 None:intergenic
TTTGGGAGACAGATATGCTT+TGG 0.389075 2_2:-9781148 Msa0236770:CDS
AAAGAGGATTCAATTGAGAT+TGG 0.391885 2_2:-9783022 Msa0236770:CDS
GTATAACAACAGTGTTGTTC+TGG 0.392054 2_2:-9782057 Msa0236770:CDS
TTTACTGGCATGAAGCATTT+GGG 0.393832 2_2:-9781165 Msa0236770:CDS
GTTGGCTGCTCCCCATTTGA+TGG 0.397291 2_2:+9781264 None:intergenic
TGTTGTTCTGGATGATCAAC+AGG 0.405150 2_2:-9782045 Msa0236770:CDS
TAGTCCCACGGAACTAGTTT+GGG 0.406291 2_2:-9782180 Msa0236770:CDS
AACGTTTAAAAGGATAATTT+GGG 0.407306 2_2:-9781244 Msa0236770:CDS
GGAAGACGGGTTGCCATTTG+TGG 0.409956 2_2:-9782888 Msa0236770:CDS
AACTATGTTTGATAATTGTA+AGG 0.416063 2_2:-9783086 Msa0236770:CDS
GGAAGAGGAAATTGGGTGCT+TGG 0.421239 2_2:-9781015 Msa0236770:CDS
GTTCCATTGGTTGTTTCCAC+TGG 0.421377 2_2:-9782434 Msa0236770:CDS
AATTGATGAAGAATGTTACT+TGG 0.421489 2_2:-9783252 Msa0236770:CDS
CTTGGTTCCATCTTGTAGTA+GGG 0.421955 2_2:-9781754 Msa0236770:CDS
ATTGGTTGTTTCCACTGGTC+CGG 0.424350 2_2:-9782429 Msa0236770:CDS
AGGCCCCTAAAACCATCAAA+TGG 0.425510 2_2:-9781276 Msa0236770:CDS
TTTGTTGAAAGTGGAATTGT+TGG 0.425789 2_2:+9780958 None:intergenic
CACTTACTGGATTGATGGAC+AGG 0.426039 2_2:-9781868 Msa0236770:CDS
TCCAGTTAGAACCTTTAAAC+AGG 0.426564 2_2:-9780903 Msa0236770:CDS
ATTGCCCATATGACTTTAAG+TGG 0.427061 2_2:+9781690 None:intergenic
AACTAGTTTGGGCTCCTGAT+AGG 0.428703 2_2:-9782169 Msa0236770:CDS
TGGAGAGTGGAGGTTGTGGA+CGG 0.432590 2_2:-9782095 Msa0236770:CDS
TTCACAGGCTTCTGCAAGAA+TGG 0.438288 2_2:-9780929 Msa0236770:CDS
CATGTTTACTTGCAATACTC+AGG 0.441942 2_2:-9781432 Msa0236770:CDS
GAGAGTGGAGGTTGTGGACG+GGG 0.443990 2_2:-9782093 Msa0236770:CDS
GAATATTTGCACATAATTGT+TGG 0.444607 2_2:-9781222 Msa0236770:CDS
GGCCCCTAAAACCATCAAAT+GGG 0.446257 2_2:-9781275 Msa0236770:CDS
ATATCCCAAACAGAAAGAAC+AGG 0.448559 2_2:+9783220 None:intergenic
GGACCTTCATATATCGAATC+AGG 0.448577 2_2:+9782794 None:intergenic
ATCTCCTCCCTCGTTCTTCG+TGG 0.449854 2_2:+9783153 None:intergenic
TTCAACAAATAAAGATTCAC+AGG 0.453086 2_2:-9780944 Msa0236770:CDS
TGATCAATCTGTTGTTCAAT+CGG 0.455252 2_2:-9782663 Msa0236770:CDS
CTTCAAATGTTTCAGGTACC+TGG 0.455447 2_2:+9781476 None:intergenic
CTGGAGGTATCTTGGCAGCC+AGG 0.457385 2_2:-9781494 Msa0236770:CDS
TGGCTCTGATGTGCATTGGT+GGG 0.457456 2_2:-9783374 Msa0236770:CDS
AGACCTTTGAGTCAGGTTGA+TGG 0.457589 2_2:-9782692 Msa0236770:CDS
GGGAGGAGATGGGAAGGAGA+AGG 0.463195 2_2:-9783140 Msa0236770:CDS
ACTGATTCCGAGCTTATGAT+TGG 0.463497 2_2:-9782938 Msa0236770:CDS
GCTCGGAATCAGTAGCATTA+GGG 0.465085 2_2:+9782948 None:intergenic
CTGGCTCTGATGTGCATTGG+TGG 0.465288 2_2:-9783375 Msa0236770:CDS
GGGTTGGAGAGTGGAGGTTG+TGG 0.465828 2_2:-9782099 Msa0236770:CDS
TTCACCAAACCAACTCTATC+CGG 0.466393 2_2:+9782773 None:intergenic
TGACCAAAATTTGATGCAGT+TGG 0.469612 2_2:+9783196 None:intergenic
GATATTTGGAAGAGGAAATT+GGG 0.472653 2_2:-9781022 Msa0236770:CDS
CTTAAAGTCATATGGGCAAT+GGG 0.473317 2_2:-9781687 Msa0236770:CDS
CATCTTGTAGTAGGGGCAAA+AGG 0.473661 2_2:-9781746 Msa0236770:CDS
ATATAAGAGACCTTTGAGTC+AGG 0.477326 2_2:-9782699 Msa0236770:CDS
AAAACGTTCATGGACTCACT+TGG 0.477332 2_2:-9781125 Msa0236770:CDS
ACGAAGAACGAGGGAGGAGA+TGG 0.478754 2_2:-9783151 Msa0236770:CDS
TAATGCGGTAAAACAGTATC+CGG 0.478815 2_2:+9782599 None:intergenic
GAATGATAGTAGATCTGATC+AGG 0.479177 2_2:+9782140 None:intergenic
CATGACTGTTATTTGGGCGT+TGG 0.479843 2_2:-9782636 Msa0236770:CDS
GATAAACAGTTATACATATG+TGG 0.480665 2_2:-9781925 Msa0236770:CDS
TTACAATTATCAAACATAGT+TGG 0.481504 2_2:+9783088 None:intergenic
GAATCTTTATTTGTTGAAAG+TGG 0.482826 2_2:+9780949 None:intergenic
TTGGAGTTTGAATTTGAAAG+AGG 0.482994 2_2:-9783038 Msa0236770:CDS
TATGGGCAATGGGTAGTAGA+TGG 0.485381 2_2:-9781677 Msa0236770:CDS
ATGACTTTAAGTGGAGTTGT+GGG 0.494726 2_2:+9781699 None:intergenic
TTTGCGGTTGCTGAGCTTCG+CGG 0.494762 2_2:-9781381 Msa0236770:CDS
ATTGGAATTTACACGTCCCT+TGG 0.496061 2_2:-9781772 Msa0236770:CDS
GCCTGAACACCATGAGCCTC+AGG 0.496343 2_2:+9782203 None:intergenic
CAGTGTGGCATTCCCACCAA+TGG 0.497818 2_2:+9782259 None:intergenic
CATTCCACTGCCAAATCCTA+TGG 0.498718 2_2:+9781947 None:intergenic
CCGCGAGAAGCAGCGAGCAC+GGG 0.500795 2_2:-9781049 Msa0236770:CDS
TCGGTGTATGAGAAGAAAAT+GGG 0.502362 2_2:-9782119 Msa0236770:CDS
TGATCAGATCTACTATCATT+CGG 0.502694 2_2:-9782138 Msa0236770:CDS
GGCTCTGATGTGCATTGGTG+GGG 0.503046 2_2:-9783373 Msa0236770:CDS
TGATTCGATATATGAAGGTC+CGG 0.503314 2_2:-9782792 Msa0236770:CDS
ACCGCGAGAAGCAGCGAGCA+CGG 0.506718 2_2:-9781050 Msa0236770:CDS
GAAGAAAATGGGTTGGAGAG+TGG 0.506742 2_2:-9782108 Msa0236770:CDS
TGTCCTGATTCGATATATGA+AGG 0.511057 2_2:-9782797 Msa0236770:CDS
ACTTAAAGTCATATGGGCAA+TGG 0.511086 2_2:-9781688 Msa0236770:CDS
TGGTTCTGCAGAAGCAGAGC+AGG 0.512384 2_2:-9781580 Msa0236770:CDS
GCTGGTGGTCCTGAGGCTCA+TGG 0.515891 2_2:-9782212 Msa0236770:CDS
TGCTGATGCAAAAGTTCCAT+TGG 0.516316 2_2:-9782447 Msa0236770:CDS
AGAATCTTGGCAGGATTTGG+CGG 0.516390 2_2:+9782389 None:intergenic
TTTGATAATTTCACCAATGG+AGG 0.517652 2_2:-9783334 Msa0236770:CDS
GAATCTTGGCAGGATTTGGC+GGG 0.518974 2_2:+9782390 None:intergenic
AGAAGCAGCGAGCACGGGAT+CGG 0.521776 2_2:-9781044 Msa0236770:CDS
TCTTTATCACCAGCATCTAA+AGG 0.522322 2_2:+9782488 None:intergenic
AGGTCCGGATAGAGTTGGTT+TGG 0.522338 2_2:-9782777 Msa0236770:CDS
TTGATGTAAAGAATCTTGGC+AGG 0.522540 2_2:+9782380 None:intergenic
AACTCCACTTAAAGTCATAT+GGG 0.525949 2_2:-9781694 Msa0236770:CDS
GTGAGATGCAAAACAGAAAA+CGG 0.526080 2_2:-9781804 Msa0236770:CDS
CGAAGAACGAGGGAGGAGAT+GGG 0.526235 2_2:-9783150 Msa0236770:CDS
ATTGATGAAGAATGTTACTT+GGG 0.527040 2_2:-9783251 Msa0236770:CDS
TATGACTTTAAGTGGAGTTG+TGG 0.527868 2_2:+9781698 None:intergenic
CGCATCAGCTGAACAAGTAT+AGG 0.528232 2_2:+9781603 None:intergenic
TAGGAGTGATGGGGTTTCGT+TGG 0.530705 2_2:-9782726 Msa0236770:CDS
CAGTTATACATATGTGGGAT+GGG 0.531034 2_2:-9781919 Msa0236770:CDS
GAACGAGGGAGGAGATGGGA+AGG 0.531311 2_2:-9783146 Msa0236770:CDS
TATATTACTACAGATCCCAT+TGG 0.531920 2_2:-9782275 Msa0236770:CDS
TTTAGATGCTGGTGATAAAG+AGG 0.532835 2_2:-9782486 Msa0236770:CDS
CTTTGACAATGTCCAAAAGA+AGG 0.532849 2_2:+9782019 None:intergenic
TGTTGGACTCAAGAGATCAA+TGG 0.533020 2_2:+9780975 None:intergenic
CAGGTACCTGAAACATTTGA+AGG 0.535559 2_2:-9781475 Msa0236770:CDS
TGAAACAATGAATCCTCCAT+TGG 0.538253 2_2:+9783321 None:intergenic
AAGAGTGGTTATCTTGCCAT+AGG 0.539558 2_2:-9781963 Msa0236770:CDS
ATGATACAAGGTTGATATAC+GGG 0.540824 2_2:-9782751 Msa0236770:CDS
AGAAAACGGCATGATTACAT+TGG 0.544819 2_2:-9781790 Msa0236770:CDS
GGGTTAGGGTAATGCAAAGC+CGG 0.546867 2_2:+9782410 None:intergenic
AAATGACCAAAAGTCTCAAA+CGG 0.548603 2_2:+9782551 None:intergenic
TGGGTTGATGACAATGGTGT+TGG 0.549825 2_2:-9781900 Msa0236770:CDS
CAGAATGTGAATGATTGTAA+AGG 0.550009 2_2:-9782512 Msa0236770:CDS
ACAGTTATACATATGTGGGA+TGG 0.551164 2_2:-9781920 Msa0236770:CDS
CAAGGTTGATATACGGGCAT+AGG 0.552235 2_2:-9782745 Msa0236770:CDS
GGCCTGAGGAATGCATTAGC+TGG 0.554995 2_2:+9781294 None:intergenic
AGTGTGGCATTCCCACCAAT+GGG 0.555344 2_2:+9782260 None:intergenic
TTACCATCAACCTGACTCAA+AGG 0.556389 2_2:+9782689 None:intergenic
CTGGCTGCCAAGATACCTCC+AGG 0.556842 2_2:+9781495 None:intergenic
GAGAGTGGAAAGAGGAGTGC+CGG 0.559547 2_2:-9782336 Msa0236770:CDS
ATATACGGGCATAGGAGTGA+TGG 0.560999 2_2:-9782737 Msa0236770:CDS
AACCAGCTAATGCATTCCTC+AGG 0.561640 2_2:-9781296 Msa0236770:CDS
TATACGGGCATAGGAGTGAT+GGG 0.562005 2_2:-9782736 Msa0236770:CDS
TTGGTTCCATCTTGTAGTAG+GGG 0.563124 2_2:-9781753 Msa0236770:CDS
CTTGCCATAGGATTTGGCAG+TGG 0.563630 2_2:-9781951 Msa0236770:CDS
ATCAGCACCAATCATAAGCT+CGG 0.565906 2_2:+9782931 None:intergenic
ATGTTTACTTGCAATACTCA+GGG 0.567475 2_2:-9781431 Msa0236770:CDS
ATAAACAGTTATACATATGT+GGG 0.568097 2_2:-9781924 Msa0236770:CDS
GTGAAGATGGATCTGTCGAA+GGG 0.568991 2_2:-9782823 Msa0236770:CDS
AACACTGTTGTTATACATGT+CGG 0.570128 2_2:+9782064 None:intergenic
TGTGTGAAGAATAGTGAAGA+TGG 0.570545 2_2:-9782836 Msa0236770:CDS
ATAAAGCGCAACATCATGCC+CGG 0.572365 2_2:+9782295 None:intergenic
CTAACTGAGACAATTTATGC+TGG 0.573223 2_2:-9782230 Msa0236770:CDS
GGAAGCTCCTGTGTTGAGAG+TGG 0.577718 2_2:-9782351 Msa0236770:CDS
CGGGATCGGATATTTGGAAG+AGG 0.577832 2_2:-9781030 Msa0236770:CDS
CCTGTGTTGAGAGTGGAAAG+AGG 0.578222 2_2:-9782344 Msa0236770:CDS
GAAAATGGGTTGGAGAGTGG+AGG 0.579894 2_2:-9782105 Msa0236770:CDS
TGTAAAGGTCCTTTAGATGC+TGG 0.582856 2_2:-9782497 Msa0236770:CDS
AACTGGGGTTATGAATTACA+TGG 0.584156 2_2:-9782987 Msa0236770:CDS
TATCTGGCTCTGATGTGCAT+TGG 0.584450 2_2:-9783378 Msa0236770:CDS
ATTACTACAGATCCCATTGG+TGG 0.584690 2_2:-9782272 Msa0236770:CDS
TTGGTTTAGAAGGTGCAACT+GGG 0.587129 2_2:-9783003 Msa0236770:CDS
GTAATGAACATCTTACTGAA+AGG 0.589810 2_2:-9781653 Msa0236770:CDS
CCCGTGCTCGCTGCTTCTCG+CGG 0.593232 2_2:+9781049 None:intergenic
GTTGGGGAAGATGAGAGCTC+CGG 0.594601 2_2:-9782618 Msa0236770:CDS
TTTATGATGTTTCTTGCATG+GGG 0.595008 2_2:-9781528 Msa0236770:CDS
ATACTTGTTCAGCTGATGCG+TGG 0.598725 2_2:-9781600 Msa0236770:CDS
AGTGAAGATGGATCTGTCGA+AGG 0.598930 2_2:-9782824 Msa0236770:CDS
TTGGTTTGGTGAATGATACA+AGG 0.599261 2_2:-9782763 Msa0236770:CDS
TATGAAGGTCCGGATAGAGT+TGG 0.600834 2_2:-9782782 Msa0236770:CDS
TCAATGATGTTGTTACACTC+TGG 0.602077 2_2:+9781723 None:intergenic
AGGAGCCCAAACTAGTTCCG+TGG 0.607300 2_2:+9782175 None:intergenic
GGAAGACCGCCATGGTTCTG+AGG 0.608095 2_2:+9782572 None:intergenic
GCTTATGATTGGTGCTGATG+TGG 0.613221 2_2:-9782927 Msa0236770:CDS
AAATTGGGTGCTTGGCAATG+AGG 0.614704 2_2:-9781007 Msa0236770:CDS
AGAGTGGAGGTTGTGGACGG+GGG 0.616025 2_2:-9782092 Msa0236770:CDS
AATTTATGCTGGTGGTCCTG+AGG 0.616178 2_2:-9782219 Msa0236770:CDS
GGAGCCCAAACTAGTTCCGT+GGG 0.616346 2_2:+9782176 None:intergenic
AAACATCATAAAACCATGCA+CGG 0.617454 2_2:+9781539 None:intergenic
CTCAGTTAGATTCCTCAGTG+TGG 0.617997 2_2:+9782244 None:intergenic
TGTATGAGAAGAAAATGGGT+TGG 0.619184 2_2:-9782115 Msa0236770:CDS
ACTGAGACAATTTATGCTGG+TGG 0.620789 2_2:-9782227 Msa0236770:CDS
TTACTACAGATCCCATTGGT+GGG 0.621508 2_2:-9782271 Msa0236770:CDS
TGGTGTTCAGGCTAGTCCCA+CGG 0.624788 2_2:-9782192 Msa0236770:CDS
GGACCAGTGGAAACAACCAA+TGG 0.625228 2_2:+9782431 None:intergenic
AAACGTTCATGGACTCACTT+GGG 0.625372 2_2:-9781124 Msa0236770:CDS
TGGGGTATCTTGCTTCCTGG+AGG 0.628780 2_2:-9781510 Msa0236770:CDS
GTAATGCAAAGCCGGACCAG+TGG 0.629267 2_2:+9782418 None:intergenic
CCTCTTTCCACTCTCAACAC+AGG 0.640164 2_2:+9782344 None:intergenic
GCTTGTATAGAAAACGTGAC+CGG 0.640499 2_2:+9782317 None:intergenic
AGGTACCTGAAACATTTGAA+GGG 0.647814 2_2:-9781474 Msa0236770:CDS
TATGATTGGTGCTGATGTGG+CGG 0.648845 2_2:-9782924 Msa0236770:CDS
TGGTTTAGAAGGTGCAACTG+GGG 0.650155 2_2:-9783002 Msa0236770:CDS
TGACTGTTATTTGGGCGTTG+GGG 0.650959 2_2:-9782634 Msa0236770:CDS
CATTATCTTCCTCAGAACCA+TGG 0.653127 2_2:-9782581 Msa0236770:CDS
TCAATATCTATTGCTGCTCG+TGG 0.653461 2_2:-9781993 Msa0236770:CDS
GTGGGATGGGTTGATGACAA+TGG 0.653502 2_2:-9781906 Msa0236770:CDS
TCTCAAACGGAAGACCGCCA+TGG 0.654243 2_2:+9782564 None:intergenic
GCCCCTAAAACCATCAAATG+GGG 0.657142 2_2:-9781274 Msa0236770:CDS
CTACTACAAGATGGAACCAA+GGG 0.657528 2_2:+9781756 None:intergenic
AATATCACCACGAAGAACGA+GGG 0.661469 2_2:-9783160 Msa0236770:CDS
AAATATCACCACGAAGAACG+AGG 0.663007 2_2:-9783161 Msa0236770:CDS
ATCACCACGAAGAACGAGGG+AGG 0.667011 2_2:-9783157 Msa0236770:CDS
CCTACTACAAGATGGAACCA+AGG 0.677148 2_2:+9781755 None:intergenic
TTCGAGCATACATCTTACAC+AGG 0.677952 2_2:-9781841 Msa0236770:CDS
TATCCCAAACAGAAAGAACA+GGG 0.684383 2_2:+9783221 None:intergenic
TGGTTCTGAGGAAGATAATG+CGG 0.694284 2_2:+9782584 None:intergenic
ATACGGGCATAGGAGTGATG+GGG 0.707780 2_2:-9782735 Msa0236770:CDS
TGAAGATGGATCTGTCGAAG+GGG 0.709595 2_2:-9782822 Msa0236770:CDS
ATGGTTCAACATCAACTCAG+AGG 0.710473 2_2:-9783454 Msa0236770:CDS
TATCTTCCTCAGAACCATGG+CGG 0.760198 2_2:-9782578 Msa0236770:CDS
TTGGTGGGAATGCCACACTG+AGG 0.762184 2_2:-9782256 Msa0236770:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTACAATTATCAAACATAGT+TGG + chr2_2:9781269-9781288 None:intergenic 20.0%
!!! AACTATGTTTGATAATTGTA+AGG - chr2_2:9781268-9781287 Msa0236770:CDS 20.0%
!! ATAAAAAAATCATCCACAAA+TGG + chr2_2:9781482-9781501 None:intergenic 20.0%
!! ATAAACAGTTATACATATGT+GGG - chr2_2:9782430-9782449 Msa0236770:CDS 20.0%
!! AACGTTTAAAAGGATAATTT+GGG - chr2_2:9783110-9783129 Msa0236770:CDS 20.0%
!!! AATCATCGATGATTTTGAAA+TGG + chr2_2:9780926-9780945 None:intergenic 25.0%
! TCTCAATTTGATATGTTATC+TGG - chr2_2:9780960-9780979 Msa0236770:CDS 25.0%
!!! GATTTTGATAATTTCACCAA+TGG - chr2_2:9781017-9781036 Msa0236770:CDS 25.0%
! TTGAACAACGAATGTTAAAT+TGG + chr2_2:9781084-9781103 None:intergenic 25.0%
! AATTGATGAAGAATGTTACT+TGG - chr2_2:9781102-9781121 Msa0236770:CDS 25.0%
!! ATTGATGAAGAATGTTACTT+GGG - chr2_2:9781103-9781122 Msa0236770:CDS 25.0%
!!! TAATTGTAAGGTTTTGTCTA+AGG - chr2_2:9781280-9781299 Msa0236770:CDS 25.0%
!!! AATGATACAAGGTTGATATA+CGG - chr2_2:9781602-9781621 Msa0236770:CDS 25.0%
! TTTGTTGATGTAAAGAATCT+TGG + chr2_2:9781981-9782000 None:intergenic 25.0%
! GATTCTTTACATCAACAAAA+AGG - chr2_2:9781982-9782001 Msa0236770:CDS 25.0%
! GATAAACAGTTATACATATG+TGG - chr2_2:9782429-9782448 Msa0236770:CDS 25.0%
!! TTTTATGATGTTTCTTGCAT+GGG - chr2_2:9782825-9782844 Msa0236770:CDS 25.0%
!! CAAATTATCCTTTTAAACGT+TGG + chr2_2:9783111-9783130 None:intergenic 25.0%
! CAACGTTTAAAAGGATAATT+TGG - chr2_2:9783109-9783128 Msa0236770:CDS 25.0%
! GAATATTTGCACATAATTGT+TGG - chr2_2:9783132-9783151 Msa0236770:CDS 25.0%
!!! ATGATAATTTGGTTCTTAGT+AGG - chr2_2:9783255-9783274 Msa0236770:CDS 25.0%
!! GAATCTTTATTTGTTGAAAG+TGG + chr2_2:9783408-9783427 None:intergenic 25.0%
! TTCAACAAATAAAGATTCAC+AGG - chr2_2:9783410-9783429 Msa0236770:CDS 25.0%
! TTTGATAATTTCACCAATGG+AGG - chr2_2:9781020-9781039 Msa0236770:CDS 30.0%
! ATTCCAACTGCATCAAATTT+TGG - chr2_2:9781155-9781174 Msa0236770:CDS 30.0%
!! AGGTTTTGTCTAAGGATTTT+AGG - chr2_2:9781288-9781307 Msa0236770:CDS 30.0%
!! GGTTTTGTCTAAGGATTTTA+GGG - chr2_2:9781289-9781308 Msa0236770:CDS 30.0%
TTGGAGTTTGAATTTGAAAG+AGG - chr2_2:9781316-9781335 Msa0236770:CDS 30.0%
AAAGAGGATTCAATTGAGAT+TGG - chr2_2:9781332-9781351 Msa0236770:CDS 30.0%
!! TCAATTGAGATTGGTTTAGA+AGG - chr2_2:9781341-9781360 Msa0236770:CDS 30.0%
! GTTATGAATTACATGGCTTT+TGG - chr2_2:9781374-9781393 Msa0236770:CDS 30.0%
!! ATGATACAAGGTTGATATAC+GGG - chr2_2:9781603-9781622 Msa0236770:CDS 30.0%
TGATCAATCTGTTGTTCAAT+CGG - chr2_2:9781691-9781710 Msa0236770:CDS 30.0%
AAATGACCAAAAGTCTCAAA+CGG + chr2_2:9781806-9781825 None:intergenic 30.0%
CAGAATGTGAATGATTGTAA+AGG - chr2_2:9781842-9781861 Msa0236770:CDS 30.0%
TATATTACTACAGATCCCAT+TGG - chr2_2:9782079-9782098 Msa0236770:CDS 30.0%
TGATCAGATCTACTATCATT+CGG - chr2_2:9782216-9782235 Msa0236770:CDS 30.0%
AACACTGTTGTTATACATGT+CGG + chr2_2:9782293-9782312 None:intergenic 30.0%
AACTCCACTTAAAGTCATAT+GGG - chr2_2:9782660-9782679 Msa0236770:CDS 30.0%
GTAATGAACATCTTACTGAA+AGG - chr2_2:9782701-9782720 Msa0236770:CDS 30.0%
AAACATCATAAAACCATGCA+CGG + chr2_2:9782818-9782837 None:intergenic 30.0%
! GTTTTATGATGTTTCTTGCA+TGG - chr2_2:9782824-9782843 Msa0236770:CDS 30.0%
TTTATGATGTTTCTTGCATG+GGG - chr2_2:9782826-9782845 Msa0236770:CDS 30.0%
AACATTTGAAGGGTGATAAT+TGG - chr2_2:9782890-9782909 Msa0236770:CDS 30.0%
ATGTTTACTTGCAATACTCA+GGG - chr2_2:9782923-9782942 Msa0236770:CDS 30.0%
! TTTTCTTGCACTTCTTTTTG+CGG - chr2_2:9782957-9782976 Msa0236770:CDS 30.0%
AGCTCAACACATGTTAAATT+TGG - chr2_2:9783006-9783025 Msa0236770:CDS 30.0%
GATATTTGGAAGAGGAAATT+GGG - chr2_2:9783332-9783351 Msa0236770:CDS 30.0%
TTTGTTGAAAGTGGAATTGT+TGG + chr2_2:9783399-9783418 None:intergenic 30.0%
! TCATCGATGATTGCTCTTTT+AGG - chr2_2:9780934-9780953 Msa0236770:CDS 35.0%
! CATCGATGATTGCTCTTTTA+GGG - chr2_2:9780935-9780954 Msa0236770:CDS 35.0%
TGAAACAATGAATCCTCCAT+TGG + chr2_2:9781036-9781055 None:intergenic 35.0%
TATCCCAAACAGAAAGAACA+GGG + chr2_2:9781136-9781155 None:intergenic 35.0%
ATATCCCAAACAGAAAGAAC+AGG + chr2_2:9781137-9781156 None:intergenic 35.0%
TGACCAAAATTTGATGCAGT+TGG + chr2_2:9781161-9781180 None:intergenic 35.0%
AACTGGGGTTATGAATTACA+TGG - chr2_2:9781367-9781386 Msa0236770:CDS 35.0%
! TGAATTACATGGCTTTTGGT+TGG - chr2_2:9781378-9781397 Msa0236770:CDS 35.0%
!! GAATTACATGGCTTTTGGTT+GGG - chr2_2:9781379-9781398 Msa0236770:CDS 35.0%
TGTGTGAAGAATAGTGAAGA+TGG - chr2_2:9781518-9781537 Msa0236770:CDS 35.0%
! TGTCCTGATTCGATATATGA+AGG - chr2_2:9781557-9781576 Msa0236770:CDS 35.0%
TGATTCGATATATGAAGGTC+CGG - chr2_2:9781562-9781581 Msa0236770:CDS 35.0%
!! TTGGTTTGGTGAATGATACA+AGG - chr2_2:9781591-9781610 Msa0236770:CDS 35.0%
ATATAAGAGACCTTTGAGTC+AGG - chr2_2:9781655-9781674 Msa0236770:CDS 35.0%
! GGCTAACATGACTGTTATTT+GGG - chr2_2:9781712-9781731 Msa0236770:CDS 35.0%
TAATGCGGTAAAACAGTATC+CGG + chr2_2:9781758-9781777 None:intergenic 35.0%
!! GTTTGAGACTTTTGGTCATT+TGG - chr2_2:9781805-9781824 Msa0236770:CDS 35.0%
TCTTTATCACCAGCATCTAA+AGG + chr2_2:9781869-9781888 None:intergenic 35.0%
TTTAGATGCTGGTGATAAAG+AGG - chr2_2:9781868-9781887 Msa0236770:CDS 35.0%
TAAAGAATCTTGGCAGGATT+TGG + chr2_2:9781971-9781990 None:intergenic 35.0%
TTGATGTAAAGAATCTTGGC+AGG + chr2_2:9781977-9781996 None:intergenic 35.0%
CTAACTGAGACAATTTATGC+TGG - chr2_2:9782124-9782143 Msa0236770:CDS 35.0%
GAATGATAGTAGATCTGATC+AGG + chr2_2:9782217-9782236 None:intergenic 35.0%
! TTCGGTGTATGAGAAGAAAA+TGG - chr2_2:9782234-9782253 Msa0236770:CDS 35.0%
TCGGTGTATGAGAAGAAAAT+GGG - chr2_2:9782235-9782254 Msa0236770:CDS 35.0%
TGTATGAGAAGAAAATGGGT+TGG - chr2_2:9782239-9782258 Msa0236770:CDS 35.0%
! GTATAACAACAGTGTTGTTC+TGG - chr2_2:9782297-9782316 Msa0236770:CDS 35.0%
! ATCAACAGGTTACCTTCTTT+TGG - chr2_2:9782323-9782342 Msa0236770:CDS 35.0%
CTTTGACAATGTCCAAAAGA+AGG + chr2_2:9782338-9782357 None:intergenic 35.0%
! CTTCTTTTGGACATTGTCAA+AGG - chr2_2:9782336-9782355 Msa0236770:CDS 35.0%
ACAGTTATACATATGTGGGA+TGG - chr2_2:9782434-9782453 Msa0236770:CDS 35.0%
CAGTTATACATATGTGGGAT+GGG - chr2_2:9782435-9782454 Msa0236770:CDS 35.0%
GTTAACACTTACTGGATTGA+TGG - chr2_2:9782481-9782500 Msa0236770:CDS 35.0%
GTGAGATGCAAAACAGAAAA+CGG - chr2_2:9782550-9782569 Msa0236770:CDS 35.0%
AGAAAACGGCATGATTACAT+TGG - chr2_2:9782564-9782583 Msa0236770:CDS 35.0%
TCAATGATGTTGTTACACTC+TGG + chr2_2:9782634-9782653 None:intergenic 35.0%
ATGACTTTAAGTGGAGTTGT+GGG + chr2_2:9782658-9782677 None:intergenic 35.0%
TATGACTTTAAGTGGAGTTG+TGG + chr2_2:9782659-9782678 None:intergenic 35.0%
CAACTCCACTTAAAGTCATA+TGG - chr2_2:9782659-9782678 Msa0236770:CDS 35.0%
ATTGCCCATATGACTTTAAG+TGG + chr2_2:9782667-9782686 None:intergenic 35.0%
ACTTAAAGTCATATGGGCAA+TGG - chr2_2:9782666-9782685 Msa0236770:CDS 35.0%
CTTAAAGTCATATGGGCAAT+GGG - chr2_2:9782667-9782686 Msa0236770:CDS 35.0%
AGGTACCTGAAACATTTGAA+GGG - chr2_2:9782880-9782899 Msa0236770:CDS 35.0%
TATCACCCTTCAAATGTTTC+AGG + chr2_2:9782888-9782907 None:intergenic 35.0%
CATGTTTACTTGCAATACTC+AGG - chr2_2:9782922-9782941 Msa0236770:CDS 35.0%
! TGGAATTGCTGCAATAGTTT+TGG - chr2_2:9783026-9783045 Msa0236770:CDS 35.0%
!! TTTTACTGGCATGAAGCATT+TGG - chr2_2:9783188-9783207 Msa0236770:CDS 35.0%
! TTTACTGGCATGAAGCATTT+GGG - chr2_2:9783189-9783208 Msa0236770:CDS 35.0%
!! TATGCTTTGGAAAACGTTCA+TGG - chr2_2:9783219-9783238 Msa0236770:CDS 35.0%
TCACTTGGGCAATGATAATT+TGG - chr2_2:9783244-9783263 Msa0236770:CDS 35.0%
GGATATTTGGAAGAGGAAAT+TGG - chr2_2:9783331-9783350 Msa0236770:CDS 35.0%
TCCAGTTAGAACCTTTAAAC+AGG - chr2_2:9783451-9783470 Msa0236770:CDS 35.0%
! ACCTGTTTAAAGGTTCTAAC+TGG + chr2_2:9783455-9783474 None:intergenic 35.0%
ATGGTTCAACATCAACTCAG+AGG - chr2_2:9780900-9780919 Msa0236770:CDS 40.0%
TGATCCCTGTTCTTTCTGTT+TGG - chr2_2:9781129-9781148 Msa0236770:CDS 40.0%
GATCCCTGTTCTTTCTGTTT+GGG - chr2_2:9781130-9781149 Msa0236770:CDS 40.0%
AAATATCACCACGAAGAACG+AGG - chr2_2:9781193-9781212 Msa0236770:CDS 40.0%
AATATCACCACGAAGAACGA+GGG - chr2_2:9781194-9781213 Msa0236770:CDS 40.0%
GAAGGAGAAGGAGAAGAATA+AGG - chr2_2:9781226-9781245 Msa0236770:CDS 40.0%
!!! CTAAGGATTTTAGGGTACGT+TGG - chr2_2:9781297-9781316 Msa0236770:CDS 40.0%
! ATTGGTTTAGAAGGTGCAAC+TGG - chr2_2:9781350-9781369 Msa0236770:CDS 40.0%
! TTGGTTTAGAAGGTGCAACT+GGG - chr2_2:9781351-9781370 Msa0236770:CDS 40.0%
! ACTGATTCCGAGCTTATGAT+TGG - chr2_2:9781416-9781435 Msa0236770:CDS 40.0%
ATCAGCACCAATCATAAGCT+CGG + chr2_2:9781426-9781445 None:intergenic 40.0%
!!! GTTACGGGTTTTAAGGAAGA+CGG - chr2_2:9781452-9781471 Msa0236770:CDS 40.0%
!!! TTACGGGTTTTAAGGAAGAC+GGG - chr2_2:9781453-9781472 Msa0236770:CDS 40.0%
GGACCTTCATATATCGAATC+AGG + chr2_2:9781563-9781582 None:intergenic 40.0%
TTCACCAAACCAACTCTATC+CGG + chr2_2:9781584-9781603 None:intergenic 40.0%
TTACCATCAACCTGACTCAA+AGG + chr2_2:9781668-9781687 None:intergenic 40.0%
CGGCTAACATGACTGTTATT+TGG - chr2_2:9781711-9781730 Msa0236770:CDS 40.0%
! ATGACTGTTATTTGGGCGTT+GGG - chr2_2:9781719-9781738 Msa0236770:CDS 40.0%
!! TGGTTCTGAGGAAGATAATG+CGG + chr2_2:9781773-9781792 None:intergenic 40.0%
CATTATCTTCCTCAGAACCA+TGG - chr2_2:9781773-9781792 Msa0236770:CDS 40.0%
TGTAAAGGTCCTTTAGATGC+TGG - chr2_2:9781857-9781876 Msa0236770:CDS 40.0%
TGCTGATGCAAAAGTTCCAT+TGG - chr2_2:9781907-9781926 Msa0236770:CDS 40.0%
GCTTGTATAGAAAACGTGAC+CGG + chr2_2:9782040-9782059 None:intergenic 40.0%
! GTCACGTTTTCTATACAAGC+CGG - chr2_2:9782040-9782059 Msa0236770:CDS 40.0%
! TCACGTTTTCTATACAAGCC+GGG - chr2_2:9782041-9782060 Msa0236770:CDS 40.0%
ATTACTACAGATCCCATTGG+TGG - chr2_2:9782082-9782101 Msa0236770:CDS 40.0%
TTACTACAGATCCCATTGGT+GGG - chr2_2:9782083-9782102 Msa0236770:CDS 40.0%
ACTGAGACAATTTATGCTGG+TGG - chr2_2:9782127-9782146 Msa0236770:CDS 40.0%
! TGTTGTTCTGGATGATCAAC+AGG - chr2_2:9782309-9782328 Msa0236770:CDS 40.0%
TCAATATCTATTGCTGCTCG+TGG - chr2_2:9782361-9782380 Msa0236770:CDS 40.0%
AAGAGTGGTTATCTTGCCAT+AGG - chr2_2:9782391-9782410 Msa0236770:CDS 40.0%
GGTTATCTTGCCATAGGATT+TGG - chr2_2:9782397-9782416 Msa0236770:CDS 40.0%
TTGGTCGTGTTAACACTTAC+TGG - chr2_2:9782473-9782492 Msa0236770:CDS 40.0%
TTCGAGCATACATCTTACAC+AGG - chr2_2:9782513-9782532 Msa0236770:CDS 40.0%
ATTGGAATTTACACGTCCCT+TGG - chr2_2:9782582-9782601 Msa0236770:CDS 40.0%
CTACTACAAGATGGAACCAA+GGG + chr2_2:9782601-9782620 None:intergenic 40.0%
CTTGGTTCCATCTTGTAGTA+GGG - chr2_2:9782600-9782619 Msa0236770:CDS 40.0%
TTGGTTCCATCTTGTAGTAG+GGG - chr2_2:9782601-9782620 Msa0236770:CDS 40.0%
! CTTCAAATGTTTCAGGTACC+TGG + chr2_2:9782881-9782900 None:intergenic 40.0%
CAGGTACCTGAAACATTTGA+AGG - chr2_2:9782879-9782898 Msa0236770:CDS 40.0%
!!! TCCCCATTTGATGGTTTTAG+GGG + chr2_2:9783084-9783103 None:intergenic 40.0%
!! CTCCCCATTTGATGGTTTTA+GGG + chr2_2:9783085-9783104 None:intergenic 40.0%
TGCTGCAATGCCAACAAAAA+TGG + chr2_2:9783166-9783185 None:intergenic 40.0%
TTTGGGAGACAGATATGCTT+TGG - chr2_2:9783206-9783225 Msa0236770:CDS 40.0%
AAAACGTTCATGGACTCACT+TGG - chr2_2:9783229-9783248 Msa0236770:CDS 40.0%
AAACGTTCATGGACTCACTT+GGG - chr2_2:9783230-9783249 Msa0236770:CDS 40.0%
TGTTGGACTCAAGAGATCAA+TGG + chr2_2:9783382-9783401 None:intergenic 40.0%
!! TATCTGGCTCTGATGTGCAT+TGG - chr2_2:9780976-9780995 Msa0236770:CDS 45.0%
! TGGTTTAGAAGGTGCAACTG+GGG - chr2_2:9781352-9781371 Msa0236770:CDS 45.0%
GCTCGGAATCAGTAGCATTA+GGG + chr2_2:9781409-9781428 None:intergenic 45.0%
AGCTCGGAATCAGTAGCATT+AGG + chr2_2:9781410-9781429 None:intergenic 45.0%
!! GCTTATGATTGGTGCTGATG+TGG - chr2_2:9781427-9781446 Msa0236770:CDS 45.0%
!! TATGATTGGTGCTGATGTGG+CGG - chr2_2:9781430-9781449 Msa0236770:CDS 45.0%
AGTGAAGATGGATCTGTCGA+AGG - chr2_2:9781530-9781549 Msa0236770:CDS 45.0%
GTGAAGATGGATCTGTCGAA+GGG - chr2_2:9781531-9781550 Msa0236770:CDS 45.0%
TGAAGATGGATCTGTCGAAG+GGG - chr2_2:9781532-9781551 Msa0236770:CDS 45.0%
TATGAAGGTCCGGATAGAGT+TGG - chr2_2:9781572-9781591 Msa0236770:CDS 45.0%
!! CAAGGTTGATATACGGGCAT+AGG - chr2_2:9781609-9781628 Msa0236770:CDS 45.0%
ATATACGGGCATAGGAGTGA+TGG - chr2_2:9781617-9781636 Msa0236770:CDS 45.0%
TATACGGGCATAGGAGTGAT+GGG - chr2_2:9781618-9781637 Msa0236770:CDS 45.0%
!! AGACCTTTGAGTCAGGTTGA+TGG - chr2_2:9781662-9781681 Msa0236770:CDS 45.0%
! CATGACTGTTATTTGGGCGT+TGG - chr2_2:9781718-9781737 Msa0236770:CDS 45.0%
! TGACTGTTATTTGGGCGTTG+GGG - chr2_2:9781720-9781739 Msa0236770:CDS 45.0%
TATCTTCCTCAGAACCATGG+CGG - chr2_2:9781776-9781795 Msa0236770:CDS 45.0%
!! GGTCTTCCGTTTGAGACTTT+TGG - chr2_2:9781797-9781816 Msa0236770:CDS 45.0%
! GTTCCATTGGTTGTTTCCAC+TGG - chr2_2:9781920-9781939 Msa0236770:CDS 45.0%
! ATTGGTTGTTTCCACTGGTC+CGG - chr2_2:9781925-9781944 Msa0236770:CDS 45.0%
AGAATCTTGGCAGGATTTGG+CGG + chr2_2:9781968-9781987 None:intergenic 45.0%
ATAAAGCGCAACATCATGCC+CGG + chr2_2:9782062-9782081 None:intergenic 45.0%
CTCAGTTAGATTCCTCAGTG+TGG + chr2_2:9782113-9782132 None:intergenic 45.0%
AATTTATGCTGGTGGTCCTG+AGG - chr2_2:9782135-9782154 Msa0236770:CDS 45.0%
! TAGTCCCACGGAACTAGTTT+GGG - chr2_2:9782174-9782193 Msa0236770:CDS 45.0%
! AACTAGTTTGGGCTCCTGAT+AGG - chr2_2:9782185-9782204 Msa0236770:CDS 45.0%
!! TGATCAGGAGTGTTCCTATC+AGG + chr2_2:9782202-9782221 None:intergenic 45.0%
!! GAAGAAAATGGGTTGGAGAG+TGG - chr2_2:9782246-9782265 Msa0236770:CDS 45.0%
CATTCCACTGCCAAATCCTA+TGG + chr2_2:9782410-9782429 None:intergenic 45.0%
!! TGGGTTGATGACAATGGTGT+TGG - chr2_2:9782454-9782473 Msa0236770:CDS 45.0%
! CACTTACTGGATTGATGGAC+AGG - chr2_2:9782486-9782505 Msa0236770:CDS 45.0%
CCTACTACAAGATGGAACCA+AGG + chr2_2:9782602-9782621 None:intergenic 45.0%
CCTTGGTTCCATCTTGTAGT+AGG - chr2_2:9782599-9782618 Msa0236770:CDS 45.0%
! CTTTTGCCCCTACTACAAGA+TGG + chr2_2:9782610-9782629 None:intergenic 45.0%
CATCTTGTAGTAGGGGCAAA+AGG - chr2_2:9782608-9782627 Msa0236770:CDS 45.0%
TATGGGCAATGGGTAGTAGA+TGG - chr2_2:9782677-9782696 Msa0236770:CDS 45.0%
CGCATCAGCTGAACAAGTAT+AGG + chr2_2:9782754-9782773 None:intergenic 45.0%
ATACTTGTTCAGCTGATGCG+TGG - chr2_2:9782754-9782773 Msa0236770:CDS 45.0%
!! GCAGGATTTGCTTCCAGTTT+TGG - chr2_2:9782792-9782811 Msa0236770:CDS 45.0%
AACCAGCTAATGCATTCCTC+AGG - chr2_2:9783058-9783077 Msa0236770:CDS 45.0%
AGGCCCCTAAAACCATCAAA+TGG - chr2_2:9783078-9783097 Msa0236770:CDS 45.0%
GGCCCCTAAAACCATCAAAT+GGG - chr2_2:9783079-9783098 Msa0236770:CDS 45.0%
GCCCCTAAAACCATCAAATG+GGG - chr2_2:9783080-9783099 Msa0236770:CDS 45.0%
!! GCTCCCCATTTGATGGTTTT+AGG + chr2_2:9783086-9783105 None:intergenic 45.0%
!!! GGCAGATCTGCCATTTTTGT+TGG - chr2_2:9783153-9783172 Msa0236770:CDS 45.0%
!! GGCATTGCAGCACTTTTTAC+TGG - chr2_2:9783174-9783193 Msa0236770:CDS 45.0%
AAATTGGGTGCTTGGCAATG+AGG - chr2_2:9783347-9783366 Msa0236770:CDS 45.0%
TTCACAGGCTTCTGCAAGAA+TGG - chr2_2:9783425-9783444 Msa0236770:CDS 45.0%
!! TGGCTCTGATGTGCATTGGT+GGG - chr2_2:9780980-9780999 Msa0236770:CDS 50.0%
! TGTGGCGGTTACGGGTTTTA+AGG - chr2_2:9781445-9781464 Msa0236770:CDS 50.0%
! AGGTCCGGATAGAGTTGGTT+TGG - chr2_2:9781577-9781596 Msa0236770:CDS 50.0%
ATACGGGCATAGGAGTGATG+GGG - chr2_2:9781619-9781638 Msa0236770:CDS 50.0%
! TAGGAGTGATGGGGTTTCGT+TGG - chr2_2:9781628-9781647 Msa0236770:CDS 50.0%
GGACCAGTGGAAACAACCAA+TGG + chr2_2:9781926-9781945 None:intergenic 50.0%
GGGTTAGGGTAATGCAAAGC+CGG + chr2_2:9781947-9781966 None:intergenic 50.0%
GAATCTTGGCAGGATTTGGC+GGG + chr2_2:9781967-9781986 None:intergenic 50.0%
CCTCTTTCCACTCTCAACAC+AGG + chr2_2:9782013-9782032 None:intergenic 50.0%
CCTGTGTTGAGAGTGGAAAG+AGG - chr2_2:9782010-9782029 Msa0236770:CDS 50.0%
AGTGTGGCATTCCCACCAAT+GGG + chr2_2:9782097-9782116 None:intergenic 50.0%
CTAGTCCCACGGAACTAGTT+TGG - chr2_2:9782173-9782192 Msa0236770:CDS 50.0%
!! GAAAATGGGTTGGAGAGTGG+AGG - chr2_2:9782249-9782268 Msa0236770:CDS 50.0%
GCTCGTGGTGAGAAAAAGAG+TGG - chr2_2:9782376-9782395 Msa0236770:CDS 50.0%
CTTGCCATAGGATTTGGCAG+TGG - chr2_2:9782403-9782422 Msa0236770:CDS 50.0%
!! GTGGGATGGGTTGATGACAA+TGG - chr2_2:9782448-9782467 Msa0236770:CDS 50.0%
AAACCATGCACGGCCAAAAC+TGG + chr2_2:9782808-9782827 None:intergenic 50.0%
!! CTTGCTTCCTGGAGGTATCT+TGG - chr2_2:9782852-9782871 Msa0236770:CDS 50.0%
!!! TTGATGGTTTTAGGGGCCTG+AGG + chr2_2:9783077-9783096 None:intergenic 50.0%
GGGAGCAGCCAACGTTTAAA+AGG - chr2_2:9783100-9783119 Msa0236770:CDS 50.0%
CGGGATCGGATATTTGGAAG+AGG - chr2_2:9783324-9783343 Msa0236770:CDS 50.0%
GGAAGAGGAAATTGGGTGCT+TGG - chr2_2:9783339-9783358 Msa0236770:CDS 50.0%
!! CTGGCTCTGATGTGCATTGG+TGG - chr2_2:9780979-9780998 Msa0236770:CDS 55.0%
! GGCTCTGATGTGCATTGGTG+GGG - chr2_2:9780981-9781000 Msa0236770:CDS 55.0%
ATCACCACGAAGAACGAGGG+AGG - chr2_2:9781197-9781216 Msa0236770:CDS 55.0%
ATCTCCTCCCTCGTTCTTCG+TGG + chr2_2:9781204-9781223 None:intergenic 55.0%
ACGAAGAACGAGGGAGGAGA+TGG - chr2_2:9781203-9781222 Msa0236770:CDS 55.0%
CGAAGAACGAGGGAGGAGAT+GGG - chr2_2:9781204-9781223 Msa0236770:CDS 55.0%
!! TGGTGCTGATGTGGCGGTTA+CGG - chr2_2:9781436-9781455 Msa0236770:CDS 55.0%
!! GGAAGACGGGTTGCCATTTG+TGG - chr2_2:9781466-9781485 Msa0236770:CDS 55.0%
GTTGGGGAAGATGAGAGCTC+CGG - chr2_2:9781736-9781755 Msa0236770:CDS 55.0%
TCTCAAACGGAAGACCGCCA+TGG + chr2_2:9781793-9781812 None:intergenic 55.0%
GTAATGCAAAGCCGGACCAG+TGG + chr2_2:9781939-9781958 None:intergenic 55.0%
!! TGGCAGGATTTGGCGGGTTA+GGG + chr2_2:9781961-9781980 None:intergenic 55.0%
!! TTGGCAGGATTTGGCGGGTT+AGG + chr2_2:9781962-9781981 None:intergenic 55.0%
GGAAGCTCCTGTGTTGAGAG+TGG - chr2_2:9782003-9782022 Msa0236770:CDS 55.0%
! GAGAGTGGAAAGAGGAGTGC+CGG - chr2_2:9782018-9782037 Msa0236770:CDS 55.0%
CAGTGTGGCATTCCCACCAA+TGG + chr2_2:9782098-9782117 None:intergenic 55.0%
TTGGTGGGAATGCCACACTG+AGG - chr2_2:9782098-9782117 Msa0236770:CDS 55.0%
TCCTGAGGCTCATGGTGTTC+AGG - chr2_2:9782150-9782169 Msa0236770:CDS 55.0%
! TGGTGTTCAGGCTAGTCCCA+CGG - chr2_2:9782162-9782181 Msa0236770:CDS 55.0%
GGAGCCCAAACTAGTTCCGT+GGG + chr2_2:9782181-9782200 None:intergenic 55.0%
AGGAGCCCAAACTAGTTCCG+TGG + chr2_2:9782182-9782201 None:intergenic 55.0%
TGGAGAGTGGAGGTTGTGGA+CGG - chr2_2:9782259-9782278 Msa0236770:CDS 55.0%
! TGGTTCTGCAGAAGCAGAGC+AGG - chr2_2:9782774-9782793 Msa0236770:CDS 55.0%
!! CTTCCAGTTTTGGCCGTGCA+TGG - chr2_2:9782802-9782821 Msa0236770:CDS 55.0%
! GCATGGGGTATCTTGCTTCC+TGG - chr2_2:9782841-9782860 Msa0236770:CDS 55.0%
! TGGGGTATCTTGCTTCCTGG+AGG - chr2_2:9782844-9782863 Msa0236770:CDS 55.0%
TTTGCGGTTGCTGAGCTTCG+CGG - chr2_2:9782973-9782992 Msa0236770:CDS 55.0%
GGCCTGAGGAATGCATTAGC+TGG + chr2_2:9783063-9783082 None:intergenic 55.0%
GTTGGCTGCTCCCCATTTGA+TGG + chr2_2:9783093-9783112 None:intergenic 55.0%
CGAGCACGGGATCGGATATT+TGG - chr2_2:9783318-9783337 Msa0236770:CDS 55.0%
GAACGAGGGAGGAGATGGGA+AGG - chr2_2:9781208-9781227 Msa0236770:CDS 60.0%
GGGAGGAGATGGGAAGGAGA+AGG - chr2_2:9781214-9781233 Msa0236770:CDS 60.0%
!! GGTGCTGATGTGGCGGTTAC+GGG - chr2_2:9781437-9781456 Msa0236770:CDS 60.0%
! GGAAGACCGCCATGGTTCTG+AGG + chr2_2:9781785-9781804 None:intergenic 60.0%
GCCTGAACACCATGAGCCTC+AGG + chr2_2:9782154-9782173 None:intergenic 60.0%
GGGTTGGAGAGTGGAGGTTG+TGG - chr2_2:9782255-9782274 Msa0236770:CDS 60.0%
GGAGAGTGGAGGTTGTGGAC+GGG - chr2_2:9782260-9782279 Msa0236770:CDS 60.0%
GAGAGTGGAGGTTGTGGACG+GGG - chr2_2:9782261-9782280 Msa0236770:CDS 60.0%
AGAGTGGAGGTTGTGGACGG+GGG - chr2_2:9782262-9782281 Msa0236770:CDS 60.0%
CTGGCTGCCAAGATACCTCC+AGG + chr2_2:9782862-9782881 None:intergenic 60.0%
!! CTGGAGGTATCTTGGCAGCC+AGG - chr2_2:9782860-9782879 Msa0236770:CDS 60.0%
AGAAGCAGCGAGCACGGGAT+CGG - chr2_2:9783310-9783329 Msa0236770:CDS 60.0%
GCTGGTGGTCCTGAGGCTCA+TGG - chr2_2:9782142-9782161 Msa0236770:CDS 65.0%
ACCGCGAGAAGCAGCGAGCA+CGG - chr2_2:9783304-9783323 Msa0236770:CDS 65.0%
CCCGTGCTCGCTGCTTCTCG+CGG + chr2_2:9783308-9783327 None:intergenic 70.0%
CCGCGAGAAGCAGCGAGCAC+GGG - chr2_2:9783305-9783324 Msa0236770:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 9780900 9783476 9780900 ID=Msa0236770;Name=Msa0236770
chr2_2 mRNA 9780900 9783476 9780900 ID=Msa0236770-mRNA-1;Parent=Msa0236770;Name=Msa0236770-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|-1|0|1|-1|1|1|0|858
chr2_2 exon 9780900 9783476 9780900 ID=Msa0236770-mRNA-1:exon:4242;Parent=Msa0236770-mRNA-1
chr2_2 CDS 9780900 9783476 9780900 ID=Msa0236770-mRNA-1:cds;Parent=Msa0236770-mRNA-1
Gene Sequence

>Msa0236770

ATGGTTCAACATCAACTCAGAGGCCATTTCAAAATCATCGATGATTGCTCTTTTAGGGTTTCTCAATTTGATATGTTATCTGGCTCTGATGTGCATTGGTGGGGTGCAATTGATACAGATTTTGATAATTTCACCAATGGAGGATTCATTGTTTCAGATCATAAACTTAATCATACTTACGCCAATTTAACATTCGTTGTTCAATTGATGAAGAATGTTACTTGGGATATGATCCCTGTTCTTTCTGTTTGGGATATTCCAACTGCATCAAATTTTGGTCATGTTTTGATTCAAAATATCACCACGAAGAACGAGGGAGGAGATGGGAAGGAGAAGGAGAAGAATAAGGTAAGTGTTCATACTGAGCCAACTATGTTTGATAATTGTAAGGTTTTGTCTAAGGATTTTAGGGTACGTTGGAGTTTGAATTTGAAAGAGGATTCAATTGAGATTGGTTTAGAAGGTGCAACTGGGGTTATGAATTACATGGCTTTTGGTTGGGCTAACCCTAATGCTACTGATTCCGAGCTTATGATTGGTGCTGATGTGGCGGTTACGGGTTTTAAGGAAGACGGGTTGCCATTTGTGGATGATTTTTTTATTACTAAGTATAGTGAGTGTGTGAAGAATAGTGAAGATGGATCTGTCGAAGGGGTTTGTCCTGATTCGATATATGAAGGTCCGGATAGAGTTGGTTTGGTGAATGATACAAGGTTGATATACGGGCATAGGAGTGATGGGGTTTCGTTGGTTAGATATAAGAGACCTTTGAGTCAGGTTGATGGTAAATATGATCAATCTGTTGTTCAATCGGCTAACATGACTGTTATTTGGGCGTTGGGGAAGATGAGAGCTCCGGATACTGTTTTACCGCATTATCTTCCTCAGAACCATGGCGGTCTTCCGTTTGAGACTTTTGGTCATTTGGTTCTCAATGTTTCTCAGAATGTGAATGATTGTAAAGGTCCTTTAGATGCTGGTGATAAAGAGGATCAAGATGTGATCATTGCTGATGCAAAAGTTCCATTGGTTGTTTCCACTGGTCCGGCTTTGCATTACCCTAACCCGCCAAATCCTGCCAAGATTCTTTACATCAACAAAAAGGAAGCTCCTGTGTTGAGAGTGGAAAGAGGAGTGCCGGTCACGTTTTCTATACAAGCCGGGCATGATGTTGCGCTTTATATTACTACAGATCCCATTGGTGGGAATGCCACACTGAGGAATCTAACTGAGACAATTTATGCTGGTGGTCCTGAGGCTCATGGTGTTCAGGCTAGTCCCACGGAACTAGTTTGGGCTCCTGATAGGAACACTCCTGATCAGATCTACTATCATTCGGTGTATGAGAAGAAAATGGGTTGGAGAGTGGAGGTTGTGGACGGGGGTCTGTCCGACATGTATAACAACAGTGTTGTTCTGGATGATCAACAGGTTACCTTCTTTTGGACATTGTCAAAGGATTCAATATCTATTGCTGCTCGTGGTGAGAAAAAGAGTGGTTATCTTGCCATAGGATTTGGCAGTGGAATGATAAACAGTTATACATATGTGGGATGGGTTGATGACAATGGTGTTGGTCGTGTTAACACTTACTGGATTGATGGACAGGATGCTTCGAGCATACATCTTACACAGGAGAATCTCACACATGTGAGATGCAAAACAGAAAACGGCATGATTACATTGGAATTTACACGTCCCTTGGTTCCATCTTGTAGTAGGGGCAAAAGGCCAGAGTGTAACAACATCATTGATCCCACAACTCCACTTAAAGTCATATGGGCAATGGGTAGTAGATGGAGTAATGAACATCTTACTGAAAGGAATATGCATACTGTAACTAGTAGCAGACCTATACTTGTTCAGCTGATGCGTGGTTCTGCAGAAGCAGAGCAGGATTTGCTTCCAGTTTTGGCCGTGCATGGTTTTATGATGTTTCTTGCATGGGGTATCTTGCTTCCTGGAGGTATCTTGGCAGCCAGGTACCTGAAACATTTGAAGGGTGATAATTGGTACAAAATTCATGTTTACTTGCAATACTCAGGGTTAGCAATAATTTTTCTTGCACTTCTTTTTGCGGTTGCTGAGCTTCGCGGTTTTCATGTTAGCTCAACACATGTTAAATTTGGAATTGCTGCAATAGTTTTGGCTTGCATACAACCAGCTAATGCATTCCTCAGGCCCCTAAAACCATCAAATGGGGAGCAGCCAACGTTTAAAAGGATAATTTGGGAATATTTGCACATAATTGTTGGCAGATCTGCCATTTTTGTTGGCATTGCAGCACTTTTTACTGGCATGAAGCATTTGGGAGACAGATATGCTTTGGAAAACGTTCATGGACTCACTTGGGCAATGATAATTTGGTTCTTAGTAGGTGCATTGAGTATTGCTTATTTCGAATACCGCGAGAAGCAGCGAGCACGGGATCGGATATTTGGAAGAGGAAATTGGGTGCTTGGCAATGAGGAAGATGATTCCATTGATCTCTTGAGTCCAACAATTCCACTTTCAACAAATAAAGATTCACAGGCTTCTGCAAGAATGGAAGTCCAGTTAGAACCTTTAAACAGGTAG

Protein sequence

>Msa0236770

MVQHQLRGHFKIIDDCSFRVSQFDMLSGSDVHWWGAIDTDFDNFTNGGFIVSDHKLNHTYANLTFVVQLMKNVTWDMIPVLSVWDIPTASNFGHVLIQNITTKNEGGDGKEKEKNKVSVHTEPTMFDNCKVLSKDFRVRWSLNLKEDSIEIGLEGATGVMNYMAFGWANPNATDSELMIGADVAVTGFKEDGLPFVDDFFITKYSECVKNSEDGSVEGVCPDSIYEGPDRVGLVNDTRLIYGHRSDGVSLVRYKRPLSQVDGKYDQSVVQSANMTVIWALGKMRAPDTVLPHYLPQNHGGLPFETFGHLVLNVSQNVNDCKGPLDAGDKEDQDVIIADAKVPLVVSTGPALHYPNPPNPAKILYINKKEAPVLRVERGVPVTFSIQAGHDVALYITTDPIGGNATLRNLTETIYAGGPEAHGVQASPTELVWAPDRNTPDQIYYHSVYEKKMGWRVEVVDGGLSDMYNNSVVLDDQQVTFFWTLSKDSISIAARGEKKSGYLAIGFGSGMINSYTYVGWVDDNGVGRVNTYWIDGQDASSIHLTQENLTHVRCKTENGMITLEFTRPLVPSCSRGKRPECNNIIDPTTPLKVIWAMGSRWSNEHLTERNMHTVTSSRPILVQLMRGSAEAEQDLLPVLAVHGFMMFLAWGILLPGGILAARYLKHLKGDNWYKIHVYLQYSGLAIIFLALLFAVAELRGFHVSSTHVKFGIAAIVLACIQPANAFLRPLKPSNGEQPTFKRIIWEYLHIIVGRSAIFVGIAALFTGMKHLGDRYALENVHGLTWAMIIWFLVGALSIAYFEYREKQRARDRIFGRGNWVLGNEEDDSIDLLSPTIPLSTNKDSQASARMEVQLEPLNR*