Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0194760 | XP_003593904.2 | 91.791 | 134 | 6 | 3 | 1 | 130 | 1 | 133 | 1.71e-76 | 233 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0194760 | sp|Q8LBM2|TIF5A_ARATH | 44.275 | 131 | 67 | 4 | 1 | 130 | 3 | 128 | 1.24e-25 | 96.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0194760 | G7IP70 | 91.791 | 134 | 6 | 3 | 1 | 130 | 1 | 133 | 8.19e-77 | 233 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0194760 | TF | Tify |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0194760 | Msa0236660 | 0.889489 | 2.313867e-73 | -8.615850e-47 |
| Msa0194760 | Msa1382130 | 0.896560 | 3.279904e-76 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0194760 | MtrunA17_Chr2g0285821 | 91.791 | 134 | 6 | 3 | 1 | 130 | 1 | 133 | 1.58e-80 | 233 |
| Msa0194760 | MtrunA17_Chr8g0393051 | 71.429 | 133 | 17 | 6 | 1 | 129 | 1 | 116 | 1.19e-53 | 164 |
| Msa0194760 | MtrunA17_Chr8g0376421 | 50.376 | 133 | 50 | 4 | 2 | 130 | 4 | 124 | 1.42e-30 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0194760 | AT1G30135.1 | 44.275 | 131 | 67 | 4 | 1 | 130 | 3 | 128 | 1.26e-26 | 96.7 |
| Msa0194760 | AT2G34600.1 | 41.481 | 135 | 67 | 7 | 1 | 131 | 20 | 146 | 2.53e-17 | 73.6 |
Find 30 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCTTACATGGGGTGATTT+TGG | 0.252416 | 2_1:+11130465 | None:intergenic |
| ATTATGGTTTCAAATATTAA+AGG | 0.287910 | 2_1:-11127656 | Msa0194760:three_prime_UTR |
| AAAACTGATTCAAATTAAAT+AGG | 0.299548 | 2_1:+11127765 | None:intergenic |
| TGCACTATTGTTGGTGTTGA+TGG | 0.316876 | 2_1:+11127938 | None:intergenic |
| GATGATATGGAGATGCTTCT+TGG | 0.331037 | 2_1:+11127828 | None:intergenic |
| TACTGATGTCACAGAGCTTC+AGG | 0.335972 | 2_1:-11130257 | Msa0194760:intron |
| TGCCAGCATTAAGATGGATT+TGG | 0.344981 | 2_1:+11128009 | None:intergenic |
| AATTGTTGTATGGAGGAAAA+AGG | 0.349461 | 2_1:+11130498 | None:intergenic |
| CATCTTGCCATCGTAGAAAA+TGG | 0.392349 | 2_1:+11130285 | None:intergenic |
| TGAATCTAAATTACAATGTC+AGG | 0.402678 | 2_1:+11127624 | None:intergenic |
| GTTGATGGTTCTGACCCTAT+TGG | 0.411337 | 2_1:+11127953 | None:intergenic |
| TCTATTTGCCAGCATTAAGA+TGG | 0.436860 | 2_1:+11128003 | None:intergenic |
| TCTACAAAAGAGAAAGAATA+GGG | 0.475189 | 2_1:-11127852 | Msa0194760:CDS |
| TTCTACAAAAGAGAAAGAAT+AGG | 0.501770 | 2_1:-11127853 | Msa0194760:CDS |
| TGAGGAGATTGCACTATTGT+TGG | 0.504260 | 2_1:+11127929 | None:intergenic |
| TTCATGGAAAGACATGGTCC+AGG | 0.508073 | 2_1:+11127893 | None:intergenic |
| TGATTGCTAGAATTGTTGTA+TGG | 0.511394 | 2_1:+11130488 | None:intergenic |
| CAATAAAAGGGTAGAAGAAG+AGG | 0.519677 | 2_1:-11130353 | Msa0194760:intron |
| GGCCAAATCCATCTTAATGC+TGG | 0.519970 | 2_1:-11128011 | Msa0194760:CDS |
| CCATGAAAAGATCTTTGCAA+AGG | 0.529406 | 2_1:-11127877 | Msa0194760:CDS |
| CCTCATCAATTATATAGCCC+TGG | 0.530434 | 2_1:-11127911 | Msa0194760:CDS |
| GATGAGGCGGAATTGCAACT+TGG | 0.551754 | 2_1:-11130528 | Msa0194760:CDS |
| AATGCTGGCAAATAGAATGA+AGG | 0.571363 | 2_1:-11127996 | Msa0194760:CDS |
| GAAAATGTAAGCATAAGAGA+AGG | 0.579607 | 2_1:+11127704 | None:intergenic |
| TCATGGAAAGACATGGTCCA+GGG | 0.617032 | 2_1:+11127894 | None:intergenic |
| TAGAAAATACAGAAAAGATG+AGG | 0.625542 | 2_1:-11130544 | Msa0194760:exon |
| TTGCTAGAATTGTTGTATGG+AGG | 0.628547 | 2_1:+11130491 | None:intergenic |
| CCAGGGCTATATAATTGATG+AGG | 0.642818 | 2_1:+11127911 | None:intergenic |
| AAAATACAGAAAAGATGAGG+CGG | 0.649327 | 2_1:-11130541 | Msa0194760:exon |
| CCATCGTAGAAAATGGTCAG+TGG | 0.671131 | 2_1:+11130292 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTAACATTGATTTAA+CGG | - | chr2_1:11128307-11128326 | Msa0194760:intron | 10.0% |
| !!! | TATTTTGAAATAATTTGAAA+TGG | + | chr2_1:11128538-11128557 | None:intergenic | 10.0% |
| !!! | TATTTTGAAATAATTTGAAA+TGG | + | chr2_1:11128538-11128557 | None:intergenic | 10.0% |
| !! | TAAATTTATATCAAGTATTT+AGG | + | chr2_1:11129046-11129065 | None:intergenic | 10.0% |
| !!! | ATAAATAAATATAGATTTTG+AGG | - | chr2_1:11129084-11129103 | Msa0194760:intron | 10.0% |
| !! | AGTATAAAATAGTATAAATT+TGG | + | chr2_1:11129468-11129487 | None:intergenic | 10.0% |
| !!! | TTCATTTTTTTTTGTTTTTT+TGG | - | chr2_1:11130459-11130478 | Msa0194760:intron | 10.0% |
| !!! | TTGTTAATTTGTTCAATAAA+AGG | - | chr2_1:11127777-11127796 | Msa0194760:three_prime_UTR | 15.0% |
| !!! | TGTTAATTTGTTCAATAAAA+GGG | - | chr2_1:11127778-11127797 | Msa0194760:three_prime_UTR | 15.0% |
| !!! | AGTAAATGACTTTTTTTTTT+TGG | + | chr2_1:11128631-11128650 | None:intergenic | 15.0% |
| !!! | ATATAAATTTAGTTTTCATG+AGG | - | chr2_1:11129055-11129074 | Msa0194760:intron | 15.0% |
| !! | AAAATACAAATTCATATCAA+GGG | + | chr2_1:11129374-11129393 | None:intergenic | 15.0% |
| !! | AAAAATACAAATTCATATCA+AGG | + | chr2_1:11129375-11129394 | None:intergenic | 15.0% |
| !!! | ATGAATTTGTATTTTTTTAC+CGG | - | chr2_1:11129379-11129398 | Msa0194760:intron | 15.0% |
| !! | AAAAAATTAACAAATTCATC+CGG | + | chr2_1:11129401-11129420 | None:intergenic | 15.0% |
| !! | AAACCTTAAAAAGAAAATTA+AGG | - | chr2_1:11129672-11129691 | Msa0194760:intron | 15.0% |
| !!! | TATCCTTAATTTTCTTTTTA+AGG | + | chr2_1:11129678-11129697 | None:intergenic | 15.0% |
| !!! | TCATTTTTGTTAAAAAAGTT+TGG | - | chr2_1:11129824-11129843 | Msa0194760:intron | 15.0% |
| !!! | AAAACTGATTCAAATTAAAT+AGG | + | chr2_1:11130381-11130400 | None:intergenic | 15.0% |
| !! | ATTATGGTTTCAAATATTAA+AGG | - | chr2_1:11130487-11130506 | Msa0194760:CDS | 15.0% |
| !!! | AAAACAAATTTTGCTTACAT+GGG | + | chr2_1:11127691-11127710 | None:intergenic | 20.0% |
| !!! | TAATTGTTTTGGTTTTAGTT+TGG | - | chr2_1:11128140-11128159 | Msa0194760:intron | 20.0% |
| !!! | CATAAAAAGTCACAATTTTA+AGG | + | chr2_1:11128378-11128397 | None:intergenic | 20.0% |
| !!! | AAATGACTTTTTTTTTTTGG+TGG | + | chr2_1:11128628-11128647 | None:intergenic | 20.0% |
| !!! | TTTTGATGGTTAGTTTAAAT+TGG | + | chr2_1:11128982-11129001 | None:intergenic | 20.0% |
| !!! | TGCGGAAAATAATTTTTAAA+AGG | - | chr2_1:11129162-11129181 | Msa0194760:intron | 20.0% |
| !! | AATTAACTGCTAGAAATATT+AGG | + | chr2_1:11129529-11129548 | None:intergenic | 20.0% |
| !! | CTATAAAGTTTGAAAATTCT+TGG | + | chr2_1:11129938-11129957 | None:intergenic | 20.0% |
| !!! | TGTTTTTTTGGAAAGAATTA+TGG | - | chr2_1:11130471-11130490 | Msa0194760:intron | 20.0% |
| ! | TAGAAAATACAGAAAAGATG+AGG | - | chr2_1:11127599-11127618 | Msa0194760:three_prime_UTR | 25.0% |
| !! | AAACAAATTTTGCTTACATG+GGG | + | chr2_1:11127690-11127709 | None:intergenic | 25.0% |
| !! | GAAAACAAATTTTGCTTACA+TGG | + | chr2_1:11127692-11127711 | None:intergenic | 25.0% |
| ! | ACAATCACATAACAAATGAA+AGG | + | chr2_1:11127728-11127747 | None:intergenic | 25.0% |
| !!! | TATGTGATTGTTGTTTTCTT+TGG | - | chr2_1:11127737-11127756 | Msa0194760:three_prime_UTR | 25.0% |
| !!! | ATGTGATTGTTGTTTTCTTT+GGG | - | chr2_1:11127738-11127757 | Msa0194760:three_prime_UTR | 25.0% |
| ! | ATCATATCATCTTCAATCAT+AGG | + | chr2_1:11127962-11127981 | None:intergenic | 25.0% |
| ! | CTGGTTATCATATTCAATTA+TGG | - | chr2_1:11128088-11128107 | Msa0194760:intron | 25.0% |
| ! | TTCAATTATGGATCATAAGA+AGG | - | chr2_1:11128100-11128119 | Msa0194760:intron | 25.0% |
| ! | CCAAAACAATTAATTAAGCT+GGG | + | chr2_1:11128132-11128151 | None:intergenic | 25.0% |
| ! | ACCAAAACAATTAATTAAGC+TGG | + | chr2_1:11128133-11128152 | None:intergenic | 25.0% |
| !! | AAAGTGATAATGTTTGCATT+TGG | + | chr2_1:11128206-11128225 | None:intergenic | 25.0% |
| !!! | CATTGATTTAACGGATTTTT+CGG | - | chr2_1:11128316-11128335 | Msa0194760:intron | 25.0% |
| ! | AAATGGATATTATTGCTGAA+AGG | + | chr2_1:11128521-11128540 | None:intergenic | 25.0% |
| !!! | ACTTTTTTTTTTTGGTGGAA+AGG | + | chr2_1:11128623-11128642 | None:intergenic | 25.0% |
| ! | CTATGAGACTCATAATATAT+GGG | + | chr2_1:11128661-11128680 | None:intergenic | 25.0% |
| ! | TCTATGAGACTCATAATATA+TGG | + | chr2_1:11128662-11128681 | None:intergenic | 25.0% |
| !!! | ACTGGTCTTATTTAGAAATT+TGG | + | chr2_1:11128828-11128847 | None:intergenic | 25.0% |
| !!! | TTAGTTTAAATTGGTTTGAG+AGG | + | chr2_1:11128973-11128992 | None:intergenic | 25.0% |
| !!! | AAATTTGGTGTGAATTTCAA+TGG | + | chr2_1:11129453-11129472 | None:intergenic | 25.0% |
| ! | CTAATTAACTGCTAGAAATT+CGG | + | chr2_1:11129564-11129583 | None:intergenic | 25.0% |
| !! | TTTTGTAAAAGCAAGCTAAT+TGG | - | chr2_1:11129905-11129924 | Msa0194760:intron | 25.0% |
| ! | CAGTATAAGGTCAATTATTT+CGG | - | chr2_1:11130020-11130039 | Msa0194760:intron | 25.0% |
| ! | TCAATTATTTCGGATAAGAA+AGG | - | chr2_1:11130030-11130049 | Msa0194760:intron | 25.0% |
| ! | TTCTACAAAAGAGAAAGAAT+AGG | - | chr2_1:11130290-11130309 | Msa0194760:CDS | 25.0% |
| ! | TCTACAAAAGAGAAAGAATA+GGG | - | chr2_1:11130291-11130310 | Msa0194760:CDS | 25.0% |
| ! | AGGCTATGCTAAAAAAAATA+AGG | + | chr2_1:11130361-11130380 | None:intergenic | 25.0% |
| ! | TGAATCTAAATTACAATGTC+AGG | + | chr2_1:11130522-11130541 | None:intergenic | 25.0% |
| AAAATACAGAAAAGATGAGG+CGG | - | chr2_1:11127602-11127621 | Msa0194760:three_prime_UTR | 30.0% | |
| AATTGTTGTATGGAGGAAAA+AGG | + | chr2_1:11127648-11127667 | None:intergenic | 30.0% | |
| TGATTGCTAGAATTGTTGTA+TGG | + | chr2_1:11127658-11127677 | None:intergenic | 30.0% | |
| !! | ATGTTAGCATTTGATTTGAG+TGG | - | chr2_1:11127936-11127955 | Msa0194760:CDS | 30.0% |
| ! | CCCAGCTTAATTAATTGTTT+TGG | - | chr2_1:11128129-11128148 | Msa0194760:intron | 30.0% |
| TTGCTGAAAGGTTAAATCAA+GGG | + | chr2_1:11128509-11128528 | None:intergenic | 30.0% | |
| ATTGCTGAAAGGTTAAATCA+AGG | + | chr2_1:11128510-11128529 | None:intergenic | 30.0% | |
| ACTCATAATATATGGGCAAA+AGG | + | chr2_1:11128654-11128673 | None:intergenic | 30.0% | |
| AAATACACATATTGAGAGAG+AGG | - | chr2_1:11128757-11128776 | Msa0194760:intron | 30.0% | |
| !! | TGACGTTGTTTGTGTTATTT+CGG | + | chr2_1:11128855-11128874 | None:intergenic | 30.0% |
| ACACAAACAACGTCATATTT+AGG | - | chr2_1:11128860-11128879 | Msa0194760:intron | 30.0% | |
| !!! | TTTGATTTTGGTGTTGGTTT+TGG | + | chr2_1:11129005-11129024 | None:intergenic | 30.0% |
| !! | TTTGACTTTGATTTTGGTGT+TGG | + | chr2_1:11129011-11129030 | None:intergenic | 30.0% |
| CTTGTTAATCAGATTATCTG+CGG | - | chr2_1:11129144-11129163 | Msa0194760:intron | 30.0% | |
| TGAATATAGTTCAATGGGTA+GGG | + | chr2_1:11129301-11129320 | None:intergenic | 30.0% | |
| TACCCATTGAACTATATTCA+CGG | - | chr2_1:11129301-11129320 | Msa0194760:intron | 30.0% | |
| TTCATGTGTTATGCAGTATA+AGG | - | chr2_1:11130007-11130026 | Msa0194760:intron | 30.0% | |
| ! | TGATTTTGCTAACGATGATA+TGG | + | chr2_1:11130331-11130350 | None:intergenic | 30.0% |
| !!! | CTTCTTTTTTAAACCTTGCA+AGG | - | chr2_1:11130404-11130423 | Msa0194760:intron | 30.0% |
| GAGAAAAAAAAAACCTTGCA+AGG | + | chr2_1:11130420-11130439 | None:intergenic | 30.0% | |
| GAAAATGTAAGCATAAGAGA+AGG | + | chr2_1:11130442-11130461 | None:intergenic | 30.0% | |
| TTGCTAGAATTGTTGTATGG+AGG | + | chr2_1:11127655-11127674 | None:intergenic | 35.0% | |
| CAATAAAAGGGTAGAAGAAG+AGG | - | chr2_1:11127790-11127809 | Msa0194760:three_prime_UTR | 35.0% | |
| GTCGCATACATATCTTATCA+TGG | + | chr2_1:11127988-11128007 | None:intergenic | 35.0% | |
| ! | AGTTTGAGTTACTCATTCTG+TGG | + | chr2_1:11128070-11128089 | None:intergenic | 35.0% |
| ACAGAATGAGTAACTCAAAC+TGG | - | chr2_1:11128069-11128088 | Msa0194760:intron | 35.0% | |
| !! | TTGTGTTATTTCGGTCTAAC+TGG | + | chr2_1:11128846-11128865 | None:intergenic | 35.0% |
| CAAACAACGTCATATTTAGG+CGG | - | chr2_1:11128863-11128882 | Msa0194760:intron | 35.0% | |
| TCAAGTATTTAGGCTGTTGT+GGG | + | chr2_1:11129036-11129055 | None:intergenic | 35.0% | |
| ATCAAGTATTTAGGCTGTTG+TGG | + | chr2_1:11129037-11129056 | None:intergenic | 35.0% | |
| GTGAATATAGTTCAATGGGT+AGG | + | chr2_1:11129302-11129321 | None:intergenic | 35.0% | |
| CTCCGTGAATATAGTTCAAT+GGG | + | chr2_1:11129306-11129325 | None:intergenic | 35.0% | |
| TCTCCGTGAATATAGTTCAA+TGG | + | chr2_1:11129307-11129326 | None:intergenic | 35.0% | |
| TTAAAAAAGTTTGGCGTGAG+TGG | - | chr2_1:11129833-11129852 | Msa0194760:intron | 35.0% | |
| TCTATTTGCCAGCATTAAGA+TGG | + | chr2_1:11130143-11130162 | None:intergenic | 35.0% | |
| AATGCTGGCAAATAGAATGA+AGG | - | chr2_1:11130147-11130166 | Msa0194760:intron | 35.0% | |
| AAAAAGTGACGACACCAATA+GGG | - | chr2_1:11130176-11130195 | Msa0194760:intron | 35.0% | |
| ! | GATCTTTTCATGGAAAGACA+TGG | + | chr2_1:11130259-11130278 | None:intergenic | 35.0% |
| ! | CCTTTGCAAAGATCTTTTCA+TGG | + | chr2_1:11130269-11130288 | None:intergenic | 35.0% |
| CCATGAAAAGATCTTTGCAA+AGG | - | chr2_1:11130266-11130285 | Msa0194760:CDS | 35.0% | |
| ! | TTGCTTACATGGGGTGATTT+TGG | + | chr2_1:11127681-11127700 | None:intergenic | 40.0% |
| CATCTTGCCATCGTAGAAAA+TGG | + | chr2_1:11127861-11127880 | None:intergenic | 40.0% | |
| TGAGTTACTCATTCTGTGGT+AGG | + | chr2_1:11128066-11128085 | None:intergenic | 40.0% | |
| !! | GAGATTCCTTAAGAGTGTTC+CGG | - | chr2_1:11128466-11128485 | Msa0194760:intron | 40.0% |
| !!! | GGTGTTGGTTTTGGTTTTGA+TGG | + | chr2_1:11128996-11129015 | None:intergenic | 40.0% |
| !! | TGGGGGTTTGACTTTGATTT+TGG | + | chr2_1:11129017-11129036 | None:intergenic | 40.0% |
| AAGTATTTAGGCTGTTGTGG+GGG | + | chr2_1:11129034-11129053 | None:intergenic | 40.0% | |
| CAAGTATTTAGGCTGTTGTG+GGG | + | chr2_1:11129035-11129054 | None:intergenic | 40.0% | |
| TCGAGTTTGAATCTCGGATT+CGG | + | chr2_1:11129259-11129278 | None:intergenic | 40.0% | |
| CAAGAGTCGAGTTTGAATCT+CGG | + | chr2_1:11129265-11129284 | None:intergenic | 40.0% | |
| GAACTATATTCACGGAGAGT+CGG | - | chr2_1:11129309-11129328 | Msa0194760:intron | 40.0% | |
| CTTAGCTTAAGTGCTATGCA+CGG | + | chr2_1:11129597-11129616 | None:intergenic | 40.0% | |
| AGGTTTCACTACCAACTTGT+CGG | + | chr2_1:11129658-11129677 | None:intergenic | 40.0% | |
| TCCACGAAAGAGATAGTAAG+TGG | - | chr2_1:11129701-11129720 | Msa0194760:intron | 40.0% | |
| ACCACTTACTATCTCTTTCG+TGG | + | chr2_1:11129705-11129724 | None:intergenic | 40.0% | |
| CGAAAGAGATAGTAAGTGGT+AGG | - | chr2_1:11129705-11129724 | Msa0194760:intron | 40.0% | |
| AGTAAGTGGTAGGTTCCTAT+AGG | - | chr2_1:11129715-11129734 | Msa0194760:intron | 40.0% | |
| ! | TGCCAGCATTAAGATGGATT+TGG | + | chr2_1:11130137-11130156 | None:intergenic | 40.0% |
| GAAAAAGTGACGACACCAAT+AGG | - | chr2_1:11130175-11130194 | Msa0194760:intron | 40.0% | |
| !! | TGCACTATTGTTGGTGTTGA+TGG | + | chr2_1:11130208-11130227 | None:intergenic | 40.0% |
| TGAGGAGATTGCACTATTGT+TGG | + | chr2_1:11130217-11130236 | None:intergenic | 40.0% | |
| CCAGGGCTATATAATTGATG+AGG | + | chr2_1:11130235-11130254 | None:intergenic | 40.0% | |
| CCTCATCAATTATATAGCCC+TGG | - | chr2_1:11130232-11130251 | Msa0194760:intron | 40.0% | |
| GATGATATGGAGATGCTTCT+TGG | + | chr2_1:11130318-11130337 | None:intergenic | 40.0% | |
| !!! | GGCTGTTGCTGATTTTGCAT+TGG | + | chr2_1:11127833-11127852 | None:intergenic | 45.0% |
| CCATCGTAGAAAATGGTCAG+TGG | + | chr2_1:11127854-11127873 | None:intergenic | 45.0% | |
| ! | CCACTGACCATTTTCTACGA+TGG | - | chr2_1:11127851-11127870 | Msa0194760:CDS | 45.0% |
| TACTGATGTCACAGAGCTTC+AGG | - | chr2_1:11127886-11127905 | Msa0194760:CDS | 45.0% | |
| !! | TAAGGTCTTAGAGAGTGCTC+CGG | + | chr2_1:11128360-11128379 | None:intergenic | 45.0% |
| AGTGTTCCGGAACACTCTTA+AGG | + | chr2_1:11128475-11128494 | None:intergenic | 45.0% | |
| !! | GGTCTTGTTAACGAGTGTTC+CGG | + | chr2_1:11128488-11128507 | None:intergenic | 45.0% |
| !! | TGGCGTTGTTGTTGGTTTGT+TGG | + | chr2_1:11128935-11128954 | None:intergenic | 45.0% |
| CATTTGAGTGGCGTTGTTGT+TGG | + | chr2_1:11128943-11128962 | None:intergenic | 45.0% | |
| ACAACAACGCCACTCAAATG+AGG | - | chr2_1:11128943-11128962 | Msa0194760:intron | 45.0% | |
| AGAGGTAGTCCTCATTTGAG+TGG | + | chr2_1:11128955-11128974 | None:intergenic | 45.0% | |
| AATAGTCGTTGCCGACAAGT+TGG | - | chr2_1:11129644-11129663 | Msa0194760:intron | 45.0% | |
| AAGTGGTAGGTTCCTATAGG+TGG | - | chr2_1:11129718-11129737 | Msa0194760:intron | 45.0% | |
| CATGCTCATACACCACCTAT+AGG | + | chr2_1:11129733-11129752 | None:intergenic | 45.0% | |
| TGTTAACGTGAATGTCGTGC+AGG | - | chr2_1:11130111-11130130 | Msa0194760:intron | 45.0% | |
| GGCCAAATCCATCTTAATGC+TGG | - | chr2_1:11130132-11130151 | Msa0194760:intron | 45.0% | |
| !! | GTTGATGGTTCTGACCCTAT+TGG | + | chr2_1:11130193-11130212 | None:intergenic | 45.0% |
| TCATGGAAAGACATGGTCCA+GGG | + | chr2_1:11130252-11130271 | None:intergenic | 45.0% | |
| TTCATGGAAAGACATGGTCC+AGG | + | chr2_1:11130253-11130272 | None:intergenic | 45.0% | |
| GATGAGGCGGAATTGCAACT+TGG | - | chr2_1:11127615-11127634 | Msa0194760:three_prime_UTR | 50.0% | |
| GAAATGTTAACGAGTGCCCC+CGG | - | chr2_1:11128338-11128357 | Msa0194760:intron | 50.0% | |
| !! | AAGGTCTTAGAGAGTGCTCC+GGG | + | chr2_1:11128359-11128378 | None:intergenic | 50.0% |
| !! | AGGTCTTAGAGAGTGCTCCG+GGG | + | chr2_1:11128358-11128377 | None:intergenic | 55.0% |
| !! | GGTCTTAGAGAGTGCTCCGG+GGG | + | chr2_1:11128357-11128376 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 11127557 | 11130608 | 11127557 | ID=Msa0194760;Name=Msa0194760 |
| chr2_1 | mRNA | 11127557 | 11130608 | 11127557 | ID=Msa0194760-mRNA-1;Parent=Msa0194760;Name=Msa0194760-mRNA-1;_AED=0.06;_eAED=0.06;_QI=59|1|1|1|1|1|3|266|131 |
| chr2_1 | exon | 11127557 | 11128032 | 11127557 | ID=Msa0194760-mRNA-1:exon:4959;Parent=Msa0194760-mRNA-1 |
| chr2_1 | exon | 11130258 | 11130366 | 11130258 | ID=Msa0194760-mRNA-1:exon:4958;Parent=Msa0194760-mRNA-1 |
| chr2_1 | exon | 11130473 | 11130608 | 11130473 | ID=Msa0194760-mRNA-1:exon:4957;Parent=Msa0194760-mRNA-1 |
| chr2_1 | five_prime_UTR | 11130550 | 11130608 | 11130550 | ID=Msa0194760-mRNA-1:five_prime_utr;Parent=Msa0194760-mRNA-1 |
| chr2_1 | CDS | 11130473 | 11130549 | 11130473 | ID=Msa0194760-mRNA-1:cds;Parent=Msa0194760-mRNA-1 |
| chr2_1 | CDS | 11130258 | 11130366 | 11130258 | ID=Msa0194760-mRNA-1:cds;Parent=Msa0194760-mRNA-1 |
| chr2_1 | CDS | 11127823 | 11128032 | 11127823 | ID=Msa0194760-mRNA-1:cds;Parent=Msa0194760-mRNA-1 |
| chr2_1 | three_prime_UTR | 11127557 | 11127822 | 11127557 | ID=Msa0194760-mRNA-1:three_prime_utr;Parent=Msa0194760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
