Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0236660 | XP_003593904.2 | 92.537 | 134 | 5 | 3 | 1 | 130 | 1 | 133 | 6.38e-78 | 236 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0236660 | sp|Q8LBM2|TIF5A_ARATH | 44.275 | 131 | 67 | 4 | 1 | 130 | 3 | 128 | 7.83e-26 | 97.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0236660 | G7IP70 | 92.537 | 134 | 5 | 3 | 1 | 130 | 1 | 133 | 3.05e-78 | 236 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0236660 | TF | Tify |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0194760 | Msa0236660 | 0.889489 | 2.313867e-73 | -8.615850e-47 |
| Msa0203400 | Msa0236660 | 0.813928 | 1.997098e-51 | -8.615850e-47 |
| Msa0236660 | Msa1382130 | 0.990554 | 3.461931e-183 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0236660 | MtrunA17_Chr2g0285821 | 92.537 | 134 | 5 | 3 | 1 | 130 | 1 | 133 | 5.87e-82 | 236 |
| Msa0236660 | MtrunA17_Chr8g0393051 | 72.180 | 133 | 16 | 6 | 1 | 129 | 1 | 116 | 5.52e-55 | 167 |
| Msa0236660 | MtrunA17_Chr8g0376421 | 54.962 | 131 | 47 | 4 | 2 | 130 | 4 | 124 | 1.15e-30 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0236660 | AT1G30135.1 | 44.275 | 131 | 67 | 4 | 1 | 130 | 3 | 128 | 7.96e-27 | 97.4 |
| Msa0236660 | AT2G34600.1 | 41.481 | 135 | 67 | 7 | 1 | 131 | 20 | 146 | 2.64e-17 | 73.6 |
Find 41 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCTTACATGGGGTGATTT+TGG | 0.252416 | 2_2:-9591052 | None:intergenic |
| ATTATGGTTTCAAATATTAA+AGG | 0.287910 | 2_2:+9594042 | Msa0236660:three_prime_UTR |
| AAAACTGATTCAAATTAAAT+AGG | 0.299548 | 2_2:-9593934 | None:intergenic |
| TGCACTATTGTTGGTGTTGA+TGG | 0.316876 | 2_2:-9593761 | None:intergenic |
| GATGATATGGAGATGCTTCT+TGG | 0.331037 | 2_2:-9593871 | None:intergenic |
| TACTGATGTCACAGAGCTTC+AGG | 0.335972 | 2_2:+9591272 | Msa0236660:CDS |
| GGGTAGGAGGTATATATAAA+TGG | 0.338008 | 2_2:-9590877 | None:intergenic |
| TGCCAGCATTAAGATGGATT+TGG | 0.344981 | 2_2:-9593690 | None:intergenic |
| AATTGTTGTATGGAGGAAAA+AGG | 0.349461 | 2_2:-9591019 | None:intergenic |
| TGTAAATTTCGGCGTGGAAA+CGG | 0.378677 | 2_2:-9590848 | None:intergenic |
| AATGGTGTAAATGTAAATTT+CGG | 0.383436 | 2_2:-9590859 | None:intergenic |
| CATCTTGCCATCGTAGAAAA+TGG | 0.392349 | 2_2:-9591244 | None:intergenic |
| TGAATCTAAATTACAATGTC+AGG | 0.402678 | 2_2:-9594074 | None:intergenic |
| GTTGATGGTTCTGACCCTAT+TGG | 0.411337 | 2_2:-9593746 | None:intergenic |
| TCTATTTGCCAGCATTAAGA+TGG | 0.436860 | 2_2:-9593696 | None:intergenic |
| TTCATGGAAAGACCTGGTCC+AGG | 0.470860 | 2_2:-9593806 | None:intergenic |
| GAGAGAAGAGAGTGGGTAGG+AGG | 0.472903 | 2_2:-9590890 | None:intergenic |
| TCTACAAAAGAGAAAGAATA+GGG | 0.475189 | 2_2:+9593847 | Msa0236660:CDS |
| TTCTACAAAAGAGAAAGAAT+AGG | 0.501770 | 2_2:+9593846 | Msa0236660:CDS |
| TGAGGAGATTGCACTATTGT+TGG | 0.504260 | 2_2:-9593770 | None:intergenic |
| TGATTGCTAGAATTGTTGTA+TGG | 0.511394 | 2_2:-9591029 | None:intergenic |
| GGCCAAATCCATCTTAATGC+TGG | 0.519970 | 2_2:+9593688 | Msa0236660:intron |
| CCATGAAAAGATCTTTGCAA+AGG | 0.529406 | 2_2:+9593822 | Msa0236660:CDS |
| CCTCATCAATTATATAGCCC+TGG | 0.530434 | 2_2:+9593788 | Msa0236660:CDS |
| TCAATAAAGGGTAGAAGAAG+AGG | 0.532802 | 2_2:+9591176 | Msa0236660:intron |
| AGGTATAGAGAGAAGAGAGT+GGG | 0.543087 | 2_2:-9590897 | None:intergenic |
| GATGAGGAGGAATTGCAACT+TGG | 0.553645 | 2_2:+9590989 | Msa0236660:exon |
| CGGCGTGGAAACGGCTGAGA+GGG | 0.553798 | 2_2:-9590839 | None:intergenic |
| AAGGTATAGAGAGAAGAGAG+TGG | 0.558139 | 2_2:-9590898 | None:intergenic |
| AAAATACAGAAAAGATGAGG+AGG | 0.570322 | 2_2:+9590976 | Msa0236660:exon |
| CAATTATATAGCCCTGGACC+AGG | 0.570726 | 2_2:+9593794 | Msa0236660:CDS |
| AATGCTGGCAAATAGAATGA+AGG | 0.571363 | 2_2:+9593703 | Msa0236660:CDS |
| GAAAATGTAAGCATAAGAGA+AGG | 0.579607 | 2_2:-9593995 | None:intergenic |
| ATAGAGAGAAGAGAGTGGGT+AGG | 0.591817 | 2_2:-9590893 | None:intergenic |
| TCATGGAAAGACCTGGTCCA+GGG | 0.597585 | 2_2:-9593805 | None:intergenic |
| TAGAAAATACAGAAAAGATG+AGG | 0.625542 | 2_2:+9590973 | Msa0236660:exon |
| TTGCTAGAATTGTTGTATGG+AGG | 0.628547 | 2_2:-9591026 | None:intergenic |
| CCAGGGCTATATAATTGATG+AGG | 0.642818 | 2_2:-9593788 | None:intergenic |
| TCGGCGTGGAAACGGCTGAG+AGG | 0.667558 | 2_2:-9590840 | None:intergenic |
| CCATCGTAGAAAATGGTCAG+TGG | 0.671131 | 2_2:-9591237 | None:intergenic |
| TGTAAATGTAAATTTCGGCG+TGG | 0.681497 | 2_2:-9590854 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTAACATTGATTTAA+CGG | + | chr2_2:9591928-9591947 | Msa0236660:intron | 10.0% |
| !!! | TATTTTGAAATAATTTGAAA+TGG | - | chr2_2:9592157-9592176 | None:intergenic | 10.0% |
| !! | TAAATTTATATCAAGTATTT+AGG | - | chr2_2:9592635-9592654 | None:intergenic | 10.0% |
| !!! | ATAAATAAATATAGATTTTG+AGG | + | chr2_2:9592673-9592692 | Msa0236660:intron | 10.0% |
| !! | AGTATAAAATAGTATAAATT+TGG | - | chr2_2:9593057-9593076 | None:intergenic | 10.0% |
| !!! | TTTCATTTTTTTTGTTTTTT+TGG | + | chr2_2:9594014-9594033 | Msa0236660:three_prime_UTR | 10.0% |
| !!! | TTTGTTAATTTGTTCAATAA+AGG | + | chr2_2:9591163-9591182 | Msa0236660:intron | 15.0% |
| !!! | TTGTTAATTTGTTCAATAAA+GGG | + | chr2_2:9591164-9591183 | Msa0236660:intron | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | - | chr2_2:9591521-9591540 | None:intergenic | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | - | chr2_2:9591522-9591541 | None:intergenic | 15.0% |
| !!! | AAGAAAAGTGTATAAATAAA+GGG | - | chr2_2:9591586-9591605 | None:intergenic | 15.0% |
| !!! | TAAGAAAAGTGTATAAATAA+AGG | - | chr2_2:9591587-9591606 | None:intergenic | 15.0% |
| !!! | ATATAAATTTAGTTTTCATG+AGG | + | chr2_2:9592644-9592663 | Msa0236660:intron | 15.0% |
| !! | AAAATACAAATTCATATCAA+GGG | - | chr2_2:9592963-9592982 | None:intergenic | 15.0% |
| !! | AAAAATACAAATTCATATCA+AGG | - | chr2_2:9592964-9592983 | None:intergenic | 15.0% |
| !!! | ATGAATTTGTATTTTTTTAC+CGG | + | chr2_2:9592968-9592987 | Msa0236660:intron | 15.0% |
| !! | AAAAAATTAACAAATTCATC+CGG | - | chr2_2:9592990-9593009 | None:intergenic | 15.0% |
| !! | AAACCTTAAAAAGAAAATTA+AGG | + | chr2_2:9593228-9593247 | Msa0236660:intron | 15.0% |
| !!! | TATCCTTAATTTTCTTTTTA+AGG | - | chr2_2:9593234-9593253 | None:intergenic | 15.0% |
| !!! | TCATTTTTGTTAAAAAAGTT+TGG | + | chr2_2:9593380-9593399 | Msa0236660:intron | 15.0% |
| !!! | AAAACTGATTCAAATTAAAT+AGG | - | chr2_2:9593937-9593956 | None:intergenic | 15.0% |
| !! | ATTATGGTTTCAAATATTAA+AGG | + | chr2_2:9594042-9594061 | Msa0236660:three_prime_UTR | 15.0% |
| !! | AATGGTGTAAATGTAAATTT+CGG | - | chr2_2:9590862-9590881 | None:intergenic | 20.0% |
| !!! | AAAACAAATTTTGCTTACAT+GGG | - | chr2_2:9591065-9591084 | None:intergenic | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | - | chr2_2:9591562-9591581 | None:intergenic | 20.0% |
| !!! | AGAAAAGTGTATAAATAAAG+GGG | - | chr2_2:9591585-9591604 | None:intergenic | 20.0% |
| !!! | TAATTGTTTTGGTTTTAGTT+TGG | + | chr2_2:9591761-9591780 | Msa0236660:intron | 20.0% |
| !!! | CATAAAAAGTCACAATTTTA+AGG | - | chr2_2:9591999-9592018 | None:intergenic | 20.0% |
| !! | AAATGGATATTATTGTTGAA+AGG | - | chr2_2:9592140-9592159 | None:intergenic | 20.0% |
| !!! | TTTTGATGGTTAGTTTAAAT+TGG | - | chr2_2:9592571-9592590 | None:intergenic | 20.0% |
| !!! | TGCGGAAAATAATTTTTAAA+AGG | + | chr2_2:9592751-9592770 | Msa0236660:intron | 20.0% |
| !! | AATTAACTGCTAGAAATATT+AGG | - | chr2_2:9593118-9593137 | None:intergenic | 20.0% |
| !! | CTATAAAGTTTGAAAATTCT+TGG | - | chr2_2:9593494-9593513 | None:intergenic | 20.0% |
| !!! | TGTTTTTTTGGAAAGAATTA+TGG | + | chr2_2:9594026-9594045 | Msa0236660:three_prime_UTR | 20.0% |
| ! | TAGAAAATACAGAAAAGATG+AGG | + | chr2_2:9590973-9590992 | Msa0236660:exon | 25.0% |
| !! | AAACAAATTTTGCTTACATG+GGG | - | chr2_2:9591064-9591083 | None:intergenic | 25.0% |
| !! | GAAAACAAATTTTGCTTACA+TGG | - | chr2_2:9591066-9591085 | None:intergenic | 25.0% |
| !!! | TATGTGATTGTTGTTTTCTT+TGG | + | chr2_2:9591124-9591143 | Msa0236660:intron | 25.0% |
| !!! | ATGTGATTGTTGTTTTCTTT+GGG | + | chr2_2:9591125-9591144 | Msa0236660:intron | 25.0% |
| ! | ATCATATCATCTTCAATCAT+AGG | - | chr2_2:9591351-9591370 | None:intergenic | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | - | chr2_2:9591453-9591472 | None:intergenic | 25.0% |
| !!! | TGAAATGAGTCAGTTATTTT+GGG | - | chr2_2:9591474-9591493 | None:intergenic | 25.0% |
| !! | TTGAAATGAGTCAGTTATTT+TGG | - | chr2_2:9591475-9591494 | None:intergenic | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | - | chr2_2:9591563-9591582 | None:intergenic | 25.0% |
| ! | CTGGTTATCATATTCAATTA+TGG | + | chr2_2:9591709-9591728 | Msa0236660:intron | 25.0% |
| ! | TTCAATTATGGATCATAAGA+AGG | + | chr2_2:9591721-9591740 | Msa0236660:intron | 25.0% |
| ! | CCAAAACAATTAATTAAGCT+GGG | - | chr2_2:9591753-9591772 | None:intergenic | 25.0% |
| ! | ACCAAAACAATTAATTAAGC+TGG | - | chr2_2:9591754-9591773 | None:intergenic | 25.0% |
| !! | AAAGTGATAATGTTTGCATT+TGG | - | chr2_2:9591827-9591846 | None:intergenic | 25.0% |
| !!! | CATTGATTTAACGGATTTTT+CGG | + | chr2_2:9591937-9591956 | Msa0236660:intron | 25.0% |
| ! | TTGTTGAAAGGTTAAATCAA+GGG | - | chr2_2:9592128-9592147 | None:intergenic | 25.0% |
| ! | ATTGTTGAAAGGTTAAATCA+AGG | - | chr2_2:9592129-9592148 | None:intergenic | 25.0% |
| !!! | AGTAAATGACTTTTTTTTGG+TGG | - | chr2_2:9592220-9592239 | None:intergenic | 25.0% |
| !!! | AGGAGTAAATGACTTTTTTT+TGG | - | chr2_2:9592223-9592242 | None:intergenic | 25.0% |
| ! | CTATGAGACTCATAATATAT+GGG | - | chr2_2:9592250-9592269 | None:intergenic | 25.0% |
| ! | TCTATGAGACTCATAATATA+TGG | - | chr2_2:9592251-9592270 | None:intergenic | 25.0% |
| !!! | ACTGGTCTTATTTAGAAATT+TGG | - | chr2_2:9592417-9592436 | None:intergenic | 25.0% |
| !!! | TTAGTTTAAATTGGTTTGAG+AGG | - | chr2_2:9592562-9592581 | None:intergenic | 25.0% |
| !!! | AAATTTGGTGTGAATTTCAA+TGG | - | chr2_2:9593042-9593061 | None:intergenic | 25.0% |
| !! | TTTTGTAAAAGCAAGCTAAT+TGG | + | chr2_2:9593461-9593480 | Msa0236660:intron | 25.0% |
| ! | CAGTATAAGGTCAATTATTT+CGG | + | chr2_2:9593576-9593595 | Msa0236660:intron | 25.0% |
| ! | TCAATTATTTCGGATAAGAA+AGG | + | chr2_2:9593586-9593605 | Msa0236660:intron | 25.0% |
| ! | TTCTACAAAAGAGAAAGAAT+AGG | + | chr2_2:9593846-9593865 | Msa0236660:CDS | 25.0% |
| ! | TCTACAAAAGAGAAAGAATA+GGG | + | chr2_2:9593847-9593866 | Msa0236660:CDS | 25.0% |
| ! | AGGCTATGCTAAAAAAAATA+AGG | - | chr2_2:9593917-9593936 | None:intergenic | 25.0% |
| ! | TGAATCTAAATTACAATGTC+AGG | - | chr2_2:9594077-9594096 | None:intergenic | 25.0% |
| GATGAAGCAAAAATGTGTTA+AGG | - | chr2_2:9590920-9590939 | None:intergenic | 30.0% | |
| AAAATACAGAAAAGATGAGG+AGG | + | chr2_2:9590976-9590995 | Msa0236660:exon | 30.0% | |
| AATTGTTGTATGGAGGAAAA+AGG | - | chr2_2:9591022-9591041 | None:intergenic | 30.0% | |
| TGATTGCTAGAATTGTTGTA+TGG | - | chr2_2:9591032-9591051 | None:intergenic | 30.0% | |
| !! | ATGTTAGCATTTGATTTGAG+TGG | + | chr2_2:9591325-9591344 | Msa0236660:intron | 30.0% |
| AGAAAATGGATCAGTTATTC+CGG | - | chr2_2:9591439-9591458 | None:intergenic | 30.0% | |
| TGTATAAATAAAGGGGAAAG+TGG | - | chr2_2:9591578-9591597 | None:intergenic | 30.0% | |
| TCTGTGTGAAAAACTAAAGT+AGG | + | chr2_2:9591608-9591627 | Msa0236660:intron | 30.0% | |
| CTAAAGTAGGTCAATTATAC+CGG | + | chr2_2:9591621-9591640 | Msa0236660:intron | 30.0% | |
| TAAAGTAGGTCAATTATACC+GGG | + | chr2_2:9591622-9591641 | Msa0236660:intron | 30.0% | |
| ! | CCCAGCTTAATTAATTGTTT+TGG | + | chr2_2:9591750-9591769 | Msa0236660:intron | 30.0% |
| !!! | TTTAACGGATTTTTCGGAAA+TGG | + | chr2_2:9591943-9591962 | Msa0236660:intron | 30.0% |
| !!! | ATGACTTTTTTTTGGTGGAA+AGG | - | chr2_2:9592215-9592234 | None:intergenic | 30.0% |
| ACTCATAATATATGGGCAAA+AGG | - | chr2_2:9592243-9592262 | None:intergenic | 30.0% | |
| AAATACACATATTGAGAGAG+AGG | + | chr2_2:9592346-9592365 | Msa0236660:intron | 30.0% | |
| !! | TGACGTTGTTTGTGTTATTT+CGG | - | chr2_2:9592444-9592463 | None:intergenic | 30.0% |
| ACACAAACAACGTCATATTT+AGG | + | chr2_2:9592449-9592468 | Msa0236660:intron | 30.0% | |
| !!! | TTTGATTTTGGTGTTGGTTT+TGG | - | chr2_2:9592594-9592613 | None:intergenic | 30.0% |
| !! | TTTGACTTTGATTTTGGTGT+TGG | - | chr2_2:9592600-9592619 | None:intergenic | 30.0% |
| CTTGTTAATCAGATTATCTG+CGG | + | chr2_2:9592733-9592752 | Msa0236660:intron | 30.0% | |
| TGAATATAGTTCAATGGGTA+GGG | - | chr2_2:9592890-9592909 | None:intergenic | 30.0% | |
| TACCCATTGAACTATATTCA+CGG | + | chr2_2:9592890-9592909 | Msa0236660:intron | 30.0% | |
| TTCATGTGTTATGCAGTATA+AGG | + | chr2_2:9593563-9593582 | Msa0236660:intron | 30.0% | |
| ! | TGATTTTGCTAACGATGATA+TGG | - | chr2_2:9593887-9593906 | None:intergenic | 30.0% |
| !!! | CTTCTTTTTTAAACCTTGCA+AGG | + | chr2_2:9593960-9593979 | Msa0236660:three_prime_UTR | 30.0% |
| GAGAAAAAAAAAACCTTGCA+AGG | - | chr2_2:9593976-9593995 | None:intergenic | 30.0% | |
| GAAAATGTAAGCATAAGAGA+AGG | - | chr2_2:9593998-9594017 | None:intergenic | 30.0% | |
| TGTAAATGTAAATTTCGGCG+TGG | - | chr2_2:9590857-9590876 | None:intergenic | 35.0% | |
| ! | GGGTAGGAGGTATATATAAA+TGG | - | chr2_2:9590880-9590899 | None:intergenic | 35.0% |
| TTGCTAGAATTGTTGTATGG+AGG | - | chr2_2:9591029-9591048 | None:intergenic | 35.0% | |
| TCAATAAAGGGTAGAAGAAG+AGG | + | chr2_2:9591176-9591195 | Msa0236660:intron | 35.0% | |
| GAAAATGGATCAGTTATTCC+GGG | - | chr2_2:9591438-9591457 | None:intergenic | 35.0% | |
| ! | AGTTTGAGTTACTCATTCTG+TGG | - | chr2_2:9591691-9591710 | None:intergenic | 35.0% |
| ACAGAATGAGTAACTCAAAC+TGG | + | chr2_2:9591690-9591709 | Msa0236660:intron | 35.0% | |
| !! | TTGTGTTATTTCGGTCTAAC+TGG | - | chr2_2:9592435-9592454 | None:intergenic | 35.0% |
| CAAACAACGTCATATTTAGG+CGG | + | chr2_2:9592452-9592471 | Msa0236660:intron | 35.0% | |
| TCAAGTATTTAGGCTGTTGT+GGG | - | chr2_2:9592625-9592644 | None:intergenic | 35.0% | |
| ATCAAGTATTTAGGCTGTTG+TGG | - | chr2_2:9592626-9592645 | None:intergenic | 35.0% | |
| GTGAATATAGTTCAATGGGT+AGG | - | chr2_2:9592891-9592910 | None:intergenic | 35.0% | |
| CTCCGTGAATATAGTTCAAT+GGG | - | chr2_2:9592895-9592914 | None:intergenic | 35.0% | |
| TCTCCGTGAATATAGTTCAA+TGG | - | chr2_2:9592896-9592915 | None:intergenic | 35.0% | |
| TTAAAAAAGTTTGGCGTGAG+TGG | + | chr2_2:9593389-9593408 | Msa0236660:intron | 35.0% | |
| TCTATTTGCCAGCATTAAGA+TGG | - | chr2_2:9593699-9593718 | None:intergenic | 35.0% | |
| AATGCTGGCAAATAGAATGA+AGG | + | chr2_2:9593703-9593722 | Msa0236660:CDS | 35.0% | |
| AAAAAGTGACGACACCAATA+GGG | + | chr2_2:9593732-9593751 | Msa0236660:CDS | 35.0% | |
| ! | CCTTTGCAAAGATCTTTTCA+TGG | - | chr2_2:9593825-9593844 | None:intergenic | 35.0% |
| CCATGAAAAGATCTTTGCAA+AGG | + | chr2_2:9593822-9593841 | Msa0236660:CDS | 35.0% | |
| TGTAAATTTCGGCGTGGAAA+CGG | - | chr2_2:9590851-9590870 | None:intergenic | 40.0% | |
| AGGTATAGAGAGAAGAGAGT+GGG | - | chr2_2:9590900-9590919 | None:intergenic | 40.0% | |
| AAGGTATAGAGAGAAGAGAG+TGG | - | chr2_2:9590901-9590920 | None:intergenic | 40.0% | |
| ! | TTGCTTACATGGGGTGATTT+TGG | - | chr2_2:9591055-9591074 | None:intergenic | 40.0% |
| CATCTTGCCATCGTAGAAAA+TGG | - | chr2_2:9591247-9591266 | None:intergenic | 40.0% | |
| GTCGCATACATGTCTTATCA+TGG | - | chr2_2:9591377-9591396 | None:intergenic | 40.0% | |
| TGAGTTACTCATTCTGTGGT+AGG | - | chr2_2:9591687-9591706 | None:intergenic | 40.0% | |
| !! | TAAGGTCTTAAAGAGTGCTC+CGG | - | chr2_2:9591981-9592000 | None:intergenic | 40.0% |
| !!! | GGTGTTGGTTTTGGTTTTGA+TGG | - | chr2_2:9592585-9592604 | None:intergenic | 40.0% |
| !! | TGGGGGTTTGACTTTGATTT+TGG | - | chr2_2:9592606-9592625 | None:intergenic | 40.0% |
| AAGTATTTAGGCTGTTGTGG+GGG | - | chr2_2:9592623-9592642 | None:intergenic | 40.0% | |
| CAAGTATTTAGGCTGTTGTG+GGG | - | chr2_2:9592624-9592643 | None:intergenic | 40.0% | |
| TCGAGTTTGAATCTCGGATT+CGG | - | chr2_2:9592848-9592867 | None:intergenic | 40.0% | |
| CAAGAGTCGAGTTTGAATCT+CGG | - | chr2_2:9592854-9592873 | None:intergenic | 40.0% | |
| GAACTATATTCACGGAGAGT+CGG | + | chr2_2:9592898-9592917 | Msa0236660:intron | 40.0% | |
| CTTAGCTTAAGTGCTATGCA+CGG | - | chr2_2:9593153-9593172 | None:intergenic | 40.0% | |
| AGGTTTCACTACCAACTTGT+CGG | - | chr2_2:9593214-9593233 | None:intergenic | 40.0% | |
| TCCACGAAAGAGATAGTAAG+TGG | + | chr2_2:9593257-9593276 | Msa0236660:intron | 40.0% | |
| ACCACTTACTATCTCTTTCG+TGG | - | chr2_2:9593261-9593280 | None:intergenic | 40.0% | |
| CGAAAGAGATAGTAAGTGGT+AGG | + | chr2_2:9593261-9593280 | Msa0236660:intron | 40.0% | |
| AGTAAGTGGTAGGTTCCTAT+AGG | + | chr2_2:9593271-9593290 | Msa0236660:intron | 40.0% | |
| ! | TGCCAGCATTAAGATGGATT+TGG | - | chr2_2:9593693-9593712 | None:intergenic | 40.0% |
| GAAAAAGTGACGACACCAAT+AGG | + | chr2_2:9593731-9593750 | Msa0236660:CDS | 40.0% | |
| !! | TGCACTATTGTTGGTGTTGA+TGG | - | chr2_2:9593764-9593783 | None:intergenic | 40.0% |
| TGAGGAGATTGCACTATTGT+TGG | - | chr2_2:9593773-9593792 | None:intergenic | 40.0% | |
| CCAGGGCTATATAATTGATG+AGG | - | chr2_2:9593791-9593810 | None:intergenic | 40.0% | |
| CCTCATCAATTATATAGCCC+TGG | + | chr2_2:9593788-9593807 | Msa0236660:CDS | 40.0% | |
| ! | GATCTTTTCATGGAAAGACC+TGG | - | chr2_2:9593815-9593834 | None:intergenic | 40.0% |
| GATGATATGGAGATGCTTCT+TGG | - | chr2_2:9593874-9593893 | None:intergenic | 40.0% | |
| ATAGAGAGAAGAGAGTGGGT+AGG | - | chr2_2:9590896-9590915 | None:intergenic | 45.0% | |
| GATGAGGAGGAATTGCAACT+TGG | + | chr2_2:9590989-9591008 | Msa0236660:exon | 45.0% | |
| !!! | GGCTGTTGCTGATTTTGCAT+TGG | - | chr2_2:9591219-9591238 | None:intergenic | 45.0% |
| CCATCGTAGAAAATGGTCAG+TGG | - | chr2_2:9591240-9591259 | None:intergenic | 45.0% | |
| ! | CCACTGACCATTTTCTACGA+TGG | + | chr2_2:9591237-9591256 | Msa0236660:CDS | 45.0% |
| TACTGATGTCACAGAGCTTC+AGG | + | chr2_2:9591272-9591291 | Msa0236660:CDS | 45.0% | |
| ATGGATCAGTTATTCCGGGA+CGG | - | chr2_2:9591434-9591453 | None:intergenic | 45.0% | |
| GTAGGTCAATTATACCGGGA+CGG | + | chr2_2:9591626-9591645 | Msa0236660:intron | 45.0% | |
| ACTATATACTACCTCCGTCC+CGG | - | chr2_2:9591643-9591662 | None:intergenic | 45.0% | |
| !! | AAGGTCTTAAAGAGTGCTCC+GGG | - | chr2_2:9591980-9591999 | None:intergenic | 45.0% |
| !! | GAGATTCCTTAAGAGTGCTC+CGG | + | chr2_2:9592087-9592106 | Msa0236660:intron | 45.0% |
| !! | AGGGTCTTGTTAACGAGTTC+CGG | - | chr2_2:9592109-9592128 | None:intergenic | 45.0% |
| !! | TGGCGTTGTTGTTGGTTTGT+TGG | - | chr2_2:9592524-9592543 | None:intergenic | 45.0% |
| CATTTGAGTGGCGTTGTTGT+TGG | - | chr2_2:9592532-9592551 | None:intergenic | 45.0% | |
| ACAACAACGCCACTCAAATG+AGG | + | chr2_2:9592532-9592551 | Msa0236660:intron | 45.0% | |
| AGAGGTAGTCCTCATTTGAG+TGG | - | chr2_2:9592544-9592563 | None:intergenic | 45.0% | |
| CGGATTCGGATTCACTTAAG+TGG | - | chr2_2:9592834-9592853 | None:intergenic | 45.0% | |
| AATAGTCGTTGCCGACAAGT+TGG | + | chr2_2:9593200-9593219 | Msa0236660:intron | 45.0% | |
| AAGTGGTAGGTTCCTATAGG+TGG | + | chr2_2:9593274-9593293 | Msa0236660:intron | 45.0% | |
| CATGCTCATACACCACCTAT+AGG | - | chr2_2:9593289-9593308 | None:intergenic | 45.0% | |
| TGTTAACGTGAATGTCGTGC+AGG | + | chr2_2:9593667-9593686 | Msa0236660:intron | 45.0% | |
| GGCCAAATCCATCTTAATGC+TGG | + | chr2_2:9593688-9593707 | Msa0236660:intron | 45.0% | |
| !! | GTTGATGGTTCTGACCCTAT+TGG | - | chr2_2:9593749-9593768 | None:intergenic | 45.0% |
| CAATTATATAGCCCTGGACC+AGG | + | chr2_2:9593794-9593813 | Msa0236660:CDS | 45.0% | |
| !! | AAATTAAATTTAAAAATGAA+AGG | - | chr2_2:9591102-9591121 | None:intergenic | 5.0% |
| AGTTATTACTCCCTCCGTCC+CGG | + | chr2_2:9591417-9591436 | Msa0236660:intron | 50.0% | |
| ATCAGTTATTCCGGGACGGA+GGG | - | chr2_2:9591430-9591449 | None:intergenic | 50.0% | |
| !! | AGGTCTTAAAGAGTGCTCCG+GGG | - | chr2_2:9591979-9591998 | None:intergenic | 50.0% |
| TCATGGAAAGACCTGGTCCA+GGG | - | chr2_2:9593808-9593827 | None:intergenic | 50.0% | |
| TTCATGGAAAGACCTGGTCC+AGG | - | chr2_2:9593809-9593828 | None:intergenic | 50.0% | |
| GAGAGAAGAGAGTGGGTAGG+AGG | - | chr2_2:9590893-9590912 | None:intergenic | 55.0% | |
| GATCAGTTATTCCGGGACGG+AGG | - | chr2_2:9591431-9591450 | None:intergenic | 55.0% | |
| GGTCAATTATACCGGGACGG+AGG | + | chr2_2:9591629-9591648 | Msa0236660:intron | 55.0% | |
| ! | GAAATGGTAACGAGTGCCCC+CGG | + | chr2_2:9591959-9591978 | Msa0236660:intron | 55.0% |
| !! | GGTCTTAAAGAGTGCTCCGG+GGG | - | chr2_2:9591978-9591997 | None:intergenic | 55.0% |
| ! | CGAGTTCCGGAGCACTCTTA+AGG | - | chr2_2:9592096-9592115 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 9590841 | 9594164 | 9590841 | ID=Msa0236660;Name=Msa0236660 |
| chr2_2 | mRNA | 9590841 | 9594164 | 9590841 | ID=Msa0236660-mRNA-1;Parent=Msa0236660;Name=Msa0236660-mRNA-1;_AED=0.05;_eAED=0.05;_QI=149|1|1|1|1|1|3|266|131 |
| chr2_2 | exon | 9590841 | 9591066 | 9590841 | ID=Msa0236660-mRNA-1:exon:4181;Parent=Msa0236660-mRNA-1 |
| chr2_2 | exon | 9591185 | 9591293 | 9591185 | ID=Msa0236660-mRNA-1:exon:4182;Parent=Msa0236660-mRNA-1 |
| chr2_2 | exon | 9593689 | 9594164 | 9593689 | ID=Msa0236660-mRNA-1:exon:4183;Parent=Msa0236660-mRNA-1 |
| chr2_2 | five_prime_UTR | 9590841 | 9590989 | 9590841 | ID=Msa0236660-mRNA-1:five_prime_utr;Parent=Msa0236660-mRNA-1 |
| chr2_2 | CDS | 9590990 | 9591066 | 9590990 | ID=Msa0236660-mRNA-1:cds;Parent=Msa0236660-mRNA-1 |
| chr2_2 | CDS | 9591185 | 9591293 | 9591185 | ID=Msa0236660-mRNA-1:cds;Parent=Msa0236660-mRNA-1 |
| chr2_2 | CDS | 9593689 | 9593898 | 9593689 | ID=Msa0236660-mRNA-1:cds;Parent=Msa0236660-mRNA-1 |
| chr2_2 | three_prime_UTR | 9593899 | 9594164 | 9593899 | ID=Msa0236660-mRNA-1:three_prime_utr;Parent=Msa0236660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
