Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0196270 | XP_013462737.1 | 95.385 | 195 | 4 | 1 | 6 | 195 | 1 | 195 | 1.86e-129 | 372 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0196270 | sp|Q9M8K6|MUTE_ARATH | 67.179 | 195 | 52 | 3 | 6 | 188 | 1 | 195 | 7.40e-82 | 244 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0196270 | A0A072V4N0 | 95.385 | 195 | 4 | 1 | 6 | 195 | 1 | 195 | 8.90e-130 | 372 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0196270 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0196270 | Msa0238100 | 0.829909 | 3.954263e-55 | -8.615850e-47 |
| Msa0196270 | Msa0315990 | 0.831781 | 1.374430e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0196270 | MtrunA17_Chr2g0287761 | 95.385 | 195 | 4 | 1 | 6 | 195 | 1 | 195 | 1.71e-133 | 372 |
| Msa0196270 | MtrunA17_Chr1g0158941 | 47.368 | 209 | 84 | 2 | 3 | 185 | 84 | 292 | 6.04e-58 | 184 |
| Msa0196270 | MtrunA17_Chr0c01g0489461 | 45.876 | 194 | 88 | 2 | 6 | 183 | 195 | 387 | 3.42e-49 | 164 |
| Msa0196270 | MtrunA17_Chr3g0126381 | 44.000 | 200 | 64 | 5 | 35 | 186 | 1 | 200 | 9.31e-43 | 142 |
| Msa0196270 | MtrunA17_Chr3g0132471 | 38.743 | 191 | 101 | 4 | 6 | 181 | 116 | 305 | 4.04e-38 | 133 |
| Msa0196270 | MtrunA17_Chr7g0273081 | 39.785 | 186 | 104 | 4 | 6 | 183 | 116 | 301 | 1.94e-36 | 129 |
| Msa0196270 | MtrunA17_Chr1g0191571 | 39.267 | 191 | 104 | 4 | 6 | 184 | 136 | 326 | 3.80e-35 | 126 |
| Msa0196270 | MtrunA17_Chr8g0345871 | 45.304 | 181 | 95 | 3 | 6 | 185 | 181 | 358 | 4.15e-35 | 126 |
| Msa0196270 | MtrunA17_Chr8g0366551 | 37.572 | 173 | 102 | 2 | 6 | 172 | 124 | 296 | 5.93e-35 | 125 |
| Msa0196270 | MtrunA17_Chr5g0426851 | 36.702 | 188 | 109 | 3 | 6 | 183 | 100 | 287 | 5.23e-34 | 122 |
| Msa0196270 | MtrunA17_Chr8g0346161 | 29.341 | 167 | 105 | 3 | 3 | 166 | 287 | 443 | 8.75e-18 | 80.5 |
| Msa0196270 | MtrunA17_Chr3g0126361 | 77.143 | 35 | 8 | 0 | 3 | 37 | 98 | 132 | 2.57e-13 | 64.7 |
| Msa0196270 | MtrunA17_Chr8g0346151 | 26.190 | 168 | 108 | 4 | 3 | 164 | 275 | 432 | 3.51e-13 | 67.0 |
| Msa0196270 | MtrunA17_Chr7g0275821 | 25.862 | 174 | 109 | 3 | 6 | 177 | 251 | 406 | 8.23e-13 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0196270 | AT3G06120.1 | 67.179 | 195 | 52 | 3 | 6 | 188 | 1 | 195 | 7.52e-83 | 244 |
| Msa0196270 | AT3G24140.2 | 45.960 | 198 | 90 | 2 | 6 | 186 | 197 | 394 | 5.54e-51 | 169 |
| Msa0196270 | AT3G24140.1 | 45.960 | 198 | 90 | 2 | 6 | 186 | 197 | 394 | 6.27e-51 | 169 |
| Msa0196270 | AT4G01460.1 | 43.011 | 186 | 100 | 3 | 6 | 185 | 115 | 300 | 1.19e-36 | 130 |
| Msa0196270 | AT4G01460.2 | 43.011 | 186 | 100 | 3 | 6 | 185 | 115 | 300 | 1.19e-36 | 130 |
| Msa0196270 | AT1G72210.1 | 36.413 | 184 | 111 | 2 | 6 | 183 | 125 | 308 | 6.23e-35 | 125 |
| Msa0196270 | AT2G46810.2 | 42.935 | 184 | 98 | 3 | 6 | 187 | 121 | 299 | 1.00e-34 | 124 |
| Msa0196270 | AT2G46810.3 | 42.935 | 184 | 98 | 3 | 6 | 187 | 181 | 359 | 4.21e-34 | 124 |
| Msa0196270 | AT2G46810.1 | 42.935 | 184 | 98 | 3 | 6 | 187 | 193 | 371 | 5.23e-34 | 124 |
| Msa0196270 | AT1G22490.1 | 36.813 | 182 | 112 | 2 | 6 | 184 | 115 | 296 | 6.28e-34 | 122 |
| Msa0196270 | AT3G61950.2 | 43.085 | 188 | 94 | 7 | 2 | 185 | 124 | 302 | 3.36e-31 | 115 |
| Msa0196270 | AT2G46810.4 | 43.827 | 162 | 85 | 2 | 6 | 166 | 121 | 277 | 5.36e-31 | 115 |
| Msa0196270 | AT5G53210.2 | 72.464 | 69 | 19 | 0 | 3 | 71 | 99 | 167 | 8.71e-31 | 115 |
| Msa0196270 | AT5G53210.2 | 52.174 | 69 | 33 | 0 | 98 | 166 | 276 | 344 | 1.98e-17 | 79.3 |
| Msa0196270 | AT1G72210.2 | 35.542 | 166 | 102 | 1 | 6 | 166 | 125 | 290 | 9.91e-31 | 114 |
| Msa0196270 | AT5G53210.1 | 72.464 | 69 | 19 | 0 | 3 | 71 | 99 | 167 | 1.11e-30 | 115 |
| Msa0196270 | AT5G53210.1 | 55.056 | 89 | 40 | 0 | 98 | 186 | 276 | 364 | 2.86e-27 | 106 |
| Msa0196270 | AT3G61950.1 | 43.085 | 188 | 94 | 7 | 2 | 185 | 175 | 353 | 1.75e-30 | 114 |
| Msa0196270 | AT1G22490.2 | 37.423 | 163 | 100 | 1 | 6 | 166 | 115 | 277 | 2.74e-30 | 113 |
| Msa0196270 | AT3G61950.6 | 45.455 | 154 | 73 | 5 | 2 | 153 | 124 | 268 | 7.76e-30 | 111 |
| Msa0196270 | AT3G61950.3 | 45.455 | 154 | 73 | 5 | 2 | 153 | 175 | 319 | 3.26e-29 | 111 |
| Msa0196270 | AT5G46690.1 | 36.036 | 222 | 105 | 6 | 6 | 190 | 88 | 309 | 5.54e-27 | 104 |
| Msa0196270 | AT5G65320.1 | 35.632 | 174 | 106 | 1 | 6 | 173 | 102 | 275 | 9.00e-26 | 101 |
| Msa0196270 | AT5G46690.2 | 37.037 | 189 | 91 | 4 | 6 | 166 | 88 | 276 | 3.23e-23 | 94.4 |
| Msa0196270 | AT5G65320.2 | 34.731 | 167 | 103 | 1 | 6 | 166 | 102 | 268 | 1.78e-22 | 92.0 |
| Msa0196270 | AT1G01260.1 | 29.651 | 172 | 88 | 4 | 6 | 177 | 432 | 570 | 6.67e-16 | 75.5 |
| Msa0196270 | AT1G01260.2 | 29.651 | 172 | 88 | 4 | 6 | 177 | 432 | 570 | 6.67e-16 | 75.5 |
| Msa0196270 | AT1G01260.3 | 29.651 | 172 | 88 | 4 | 6 | 177 | 432 | 570 | 6.67e-16 | 75.5 |
| Msa0196270 | AT5G46760.1 | 30.058 | 173 | 103 | 6 | 6 | 172 | 414 | 574 | 3.08e-12 | 65.1 |
Find 36 sgRNAs with CRISPR-Local
Find 306 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCCTTGTTTCTATATTAAA+AGG | 0.106112 | 2_1:+13379593 | Msa0196270:CDS |
| TTAAACTCTTCCTTCTCTTT+TGG | 0.165473 | 2_1:-13380093 | None:intergenic |
| GGAGACCAAGCATCAATAAT+AGG | 0.279505 | 2_1:+13380016 | Msa0196270:CDS |
| GATGTAGAAGTGAAAATTTC+GGG | 0.305312 | 2_1:+13380229 | Msa0196270:CDS |
| CATCAATTTGATATCTCTTC+CGG | 0.316327 | 2_1:+13380160 | Msa0196270:CDS |
| TTTGGACTCGGACCTGGGCT+AGG | 0.337861 | 2_1:-13380118 | None:intergenic |
| AGATGTAGAAGTGAAAATTT+CGG | 0.352906 | 2_1:+13380228 | Msa0196270:CDS |
| GAGACCAAGCATCAATAATA+GGG | 0.364080 | 2_1:+13380017 | Msa0196270:CDS |
| CTCTTCCGGTGATGCTTTCA+AGG | 0.364768 | 2_1:+13380174 | Msa0196270:CDS |
| GCTGGGATGTCAACTAAGTT+TGG | 0.372864 | 2_1:+13381795 | Msa0196270:CDS |
| GTGGTTTCTCAAAGAATTCC+AGG | 0.381915 | 2_1:+13380271 | Msa0196270:CDS |
| ACATAGCTGTTGAGAGGAAC+AGG | 0.425460 | 2_1:+13379527 | Msa0196270:CDS |
| ACCACTCTCAAAATCACGTT+TGG | 0.426156 | 2_1:-13380253 | None:intergenic |
| GAATTCCAGGTCAAGTTTCA+AGG | 0.446514 | 2_1:+13380284 | Msa0196270:CDS |
| CCCTTGTTTCTATATTAAAA+GGG | 0.462565 | 2_1:+13379594 | Msa0196270:CDS |
| GACCGTTCTATACCAATTTG+TGG | 0.465718 | 2_1:+13380372 | Msa0196270:CDS |
| ATTCTAAAGCTTGAAGAACT+TGG | 0.481599 | 2_1:-13380069 | None:intergenic |
| TTTGTTACTACAGATAGAGC+TGG | 0.503412 | 2_1:+13381777 | Msa0196270:intron |
| TTGGACTCGGACCTGGGCTA+GGG | 0.504016 | 2_1:-13380117 | None:intergenic |
| AAGTTTGGAGGAACTAGCTA+TGG | 0.513586 | 2_1:+13381810 | Msa0196270:CDS |
| TCTATACCAATTTGTGGTCA+AGG | 0.525881 | 2_1:+13380378 | Msa0196270:CDS |
| TCATCTTAACATCAGTAGCA+TGG | 0.547962 | 2_1:+13380345 | Msa0196270:CDS |
| ATAATCCTTGAAACTTGACC+TGG | 0.556421 | 2_1:-13380289 | None:intergenic |
| TAGTTCCTTGAAAGCATCAC+CGG | 0.563046 | 2_1:-13380179 | None:intergenic |
| GGTGATGCTTTCAAGGAACT+AGG | 0.564270 | 2_1:+13380181 | Msa0196270:CDS |
| AAGAGTTTAAGCCCTAGCCC+AGG | 0.572825 | 2_1:+13380106 | Msa0196270:CDS |
| GGGATGTCAACTAAGTTTGG+AGG | 0.579553 | 2_1:+13381798 | Msa0196270:CDS |
| TTGTTACTACAGATAGAGCT+GGG | 0.580558 | 2_1:+13381778 | Msa0196270:intron |
| ACAGATGAATGAACATCTCA+AGG | 0.583323 | 2_1:+13379555 | Msa0196270:CDS |
| CTATGTGAGACATGATCGAT+TGG | 0.585589 | 2_1:-13379510 | None:intergenic |
| CTTTAGAATCCCAAAAGAGA+AGG | 0.588008 | 2_1:+13380083 | Msa0196270:CDS |
| ATATCAAATTGATGAAGTGT+TGG | 0.611378 | 2_1:-13380151 | None:intergenic |
| AGACCAAGCATCAATAATAG+GGG | 0.616273 | 2_1:+13380018 | Msa0196270:CDS |
| GACCACAAATTGGTATAGAA+CGG | 0.617195 | 2_1:-13380374 | None:intergenic |
| TGTCTCACATAGCTGTTGAG+AGG | 0.643820 | 2_1:+13379521 | Msa0196270:CDS |
| GACCAAGCATCAATAATAGG+GGG | 0.668211 | 2_1:+13380019 | Msa0196270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAAAAAAAATAAAAGTAAA+AGG | - | chr2_1:13380822-13380841 | None:intergenic | 10.0% |
| !!! | TACAACAATTTTAAATATTT+GGG | - | chr2_1:13381083-13381102 | None:intergenic | 10.0% |
| !!! | ATACAACAATTTTAAATATT+TGG | - | chr2_1:13381084-13381103 | None:intergenic | 10.0% |
| !!! | TTATTTTAGAACTAAATAAA+AGG | - | chr2_1:13381684-13381703 | None:intergenic | 10.0% |
| !! | GTAAAAAAAATAAAAGTAAA+AGG | - | chr2_1:13380822-13380841 | None:intergenic | 10.0% |
| !!! | TACAACAATTTTAAATATTT+GGG | - | chr2_1:13381083-13381102 | None:intergenic | 10.0% |
| !!! | ATACAACAATTTTAAATATT+TGG | - | chr2_1:13381084-13381103 | None:intergenic | 10.0% |
| !!! | TTATTTTAGAACTAAATAAA+AGG | - | chr2_1:13381684-13381703 | None:intergenic | 10.0% |
| !! | TACAAGAAAATGTTAAATTA+CGG | - | chr2_1:13379767-13379786 | None:intergenic | 15.0% |
| !! | AGACAATTTATAATATGATT+TGG | - | chr2_1:13379896-13379915 | None:intergenic | 15.0% |
| !! | ATAAATTAATTAATCACTGA+AGG | + | chr2_1:13380757-13380776 | Msa0196270:intron | 15.0% |
| !!! | TTTGATATTTGATTTTTAAG+TGG | - | chr2_1:13381170-13381189 | None:intergenic | 15.0% |
| !! | CTATTTCAATACATTAAATA+TGG | - | chr2_1:13381382-13381401 | None:intergenic | 15.0% |
| !! | TTAATGTATTGAAATAGTAA+TGG | + | chr2_1:13381385-13381404 | Msa0196270:intron | 15.0% |
| !! | AGTAGTATACTATTAATTAT+AGG | - | chr2_1:13381589-13381608 | None:intergenic | 15.0% |
| !! | AATAAAAGGCAAAAATATAA+TGG | - | chr2_1:13381670-13381689 | None:intergenic | 15.0% |
| !! | TACAAGAAAATGTTAAATTA+CGG | - | chr2_1:13379767-13379786 | None:intergenic | 15.0% |
| !! | AGACAATTTATAATATGATT+TGG | - | chr2_1:13379896-13379915 | None:intergenic | 15.0% |
| !! | ATAAATTAATTAATCACTGA+AGG | + | chr2_1:13380757-13380776 | Msa0196270:intron | 15.0% |
| !!! | TTTGATATTTGATTTTTAAG+TGG | - | chr2_1:13381170-13381189 | None:intergenic | 15.0% |
| !! | CTATTTCAATACATTAAATA+TGG | - | chr2_1:13381382-13381401 | None:intergenic | 15.0% |
| !! | TTAATGTATTGAAATAGTAA+TGG | + | chr2_1:13381385-13381404 | Msa0196270:intron | 15.0% |
| !! | AGTAGTATACTATTAATTAT+AGG | - | chr2_1:13381589-13381608 | None:intergenic | 15.0% |
| !! | AATAAAAGGCAAAAATATAA+TGG | - | chr2_1:13381670-13381689 | None:intergenic | 15.0% |
| !! | TCAATAGTGAAATAAAGATA+GGG | - | chr2_1:13379640-13379659 | None:intergenic | 20.0% |
| !! | TTCAATAGTGAAATAAAGAT+AGG | - | chr2_1:13379641-13379660 | None:intergenic | 20.0% |
| !! | ACAAGAAAATGTTAAATTAC+GGG | - | chr2_1:13379766-13379785 | None:intergenic | 20.0% |
| !! | AATACATGAACAAATGATTA+AGG | + | chr2_1:13380504-13380523 | Msa0196270:intron | 20.0% |
| !! | TGTATTTGATTCATCAAATT+GGG | - | chr2_1:13380615-13380634 | None:intergenic | 20.0% |
| !! | TTGTATTTGATTCATCAAAT+TGG | - | chr2_1:13380616-13380635 | None:intergenic | 20.0% |
| !! | TACATTAAAGTGCAATTAAA+AGG | + | chr2_1:13380713-13380732 | Msa0196270:intron | 20.0% |
| !!! | AACAATTTTAAATATTTGGG+AGG | - | chr2_1:13381080-13381099 | None:intergenic | 20.0% |
| !! | AAATCAAATATCAAACTCTT+CGG | + | chr2_1:13381175-13381194 | Msa0196270:intron | 20.0% |
| !! | TAATGTAATCCAATCTTTAA+CGG | + | chr2_1:13381311-13381330 | Msa0196270:intron | 20.0% |
| !! | TTAATTAATCCGTTAAAGAT+TGG | - | chr2_1:13381323-13381342 | None:intergenic | 20.0% |
| !! | TTATATAAAGTAACCATGTA+CGG | + | chr2_1:13381453-13381472 | Msa0196270:intron | 20.0% |
| !! | CAAATTATGGAAAAAAAAGA+GGG | - | chr2_1:13381761-13381780 | None:intergenic | 20.0% |
| !! | ACAAATTATGGAAAAAAAAG+AGG | - | chr2_1:13381762-13381781 | None:intergenic | 20.0% |
| !! | TCAATAGTGAAATAAAGATA+GGG | - | chr2_1:13379640-13379659 | None:intergenic | 20.0% |
| !! | TTCAATAGTGAAATAAAGAT+AGG | - | chr2_1:13379641-13379660 | None:intergenic | 20.0% |
| !! | ACAAGAAAATGTTAAATTAC+GGG | - | chr2_1:13379766-13379785 | None:intergenic | 20.0% |
| !! | AATACATGAACAAATGATTA+AGG | + | chr2_1:13380504-13380523 | Msa0196270:intron | 20.0% |
| !! | TGTATTTGATTCATCAAATT+GGG | - | chr2_1:13380615-13380634 | None:intergenic | 20.0% |
| !! | TTGTATTTGATTCATCAAAT+TGG | - | chr2_1:13380616-13380635 | None:intergenic | 20.0% |
| !! | TACATTAAAGTGCAATTAAA+AGG | + | chr2_1:13380713-13380732 | Msa0196270:intron | 20.0% |
| !!! | AACAATTTTAAATATTTGGG+AGG | - | chr2_1:13381080-13381099 | None:intergenic | 20.0% |
| !! | AAATCAAATATCAAACTCTT+CGG | + | chr2_1:13381175-13381194 | Msa0196270:intron | 20.0% |
| !! | TAATGTAATCCAATCTTTAA+CGG | + | chr2_1:13381311-13381330 | Msa0196270:intron | 20.0% |
| !! | TTAATTAATCCGTTAAAGAT+TGG | - | chr2_1:13381323-13381342 | None:intergenic | 20.0% |
| !! | TTATATAAAGTAACCATGTA+CGG | + | chr2_1:13381453-13381472 | Msa0196270:intron | 20.0% |
| !! | CAAATTATGGAAAAAAAAGA+GGG | - | chr2_1:13381761-13381780 | None:intergenic | 20.0% |
| !! | ACAAATTATGGAAAAAAAAG+AGG | - | chr2_1:13381762-13381781 | None:intergenic | 20.0% |
| !! | CCTTTTAATATAGAAACAAG+GGG | - | chr2_1:13379596-13379615 | None:intergenic | 25.0% |
| !! | CCCTTTTAATATAGAAACAA+GGG | - | chr2_1:13379597-13379616 | None:intergenic | 25.0% |
| !!! | CCCTTGTTTCTATATTAAAA+GGG | + | chr2_1:13379594-13379613 | Msa0196270:CDS | 25.0% |
| !! | ACCCTTTTAATATAGAAACA+AGG | - | chr2_1:13379598-13379617 | None:intergenic | 25.0% |
| ! | TTAGCAATGAAATTAAAGAG+TGG | - | chr2_1:13379686-13379705 | None:intergenic | 25.0% |
| !!! | TTTTTGTAATTTGTGTGTGA+TGG | + | chr2_1:13379963-13379982 | Msa0196270:intron | 25.0% |
| ! | ATATCAAATTGATGAAGTGT+TGG | - | chr2_1:13380154-13380173 | None:intergenic | 25.0% |
| ! | AGATGTAGAAGTGAAAATTT+CGG | + | chr2_1:13380228-13380247 | Msa0196270:CDS | 25.0% |
| !! | TCTAAGCAACTGAAATTTTT+AGG | + | chr2_1:13380568-13380587 | Msa0196270:intron | 25.0% |
| !!! | ATTTTTAGGCTTGTTCAATT+AGG | + | chr2_1:13380582-13380601 | Msa0196270:intron | 25.0% |
| !!! | TTTTTAGGCTTGTTCAATTA+GGG | + | chr2_1:13380583-13380602 | Msa0196270:intron | 25.0% |
| ! | TAATGTAGCAGCTATAAATA+TGG | - | chr2_1:13380700-13380719 | None:intergenic | 25.0% |
| !!! | GTTTGTATTTTGAATGGTTT+TGG | - | chr2_1:13380973-13380992 | None:intergenic | 25.0% |
| !!! | CCATATGTTTGTATTTTGAA+TGG | - | chr2_1:13380979-13380998 | None:intergenic | 25.0% |
| ! | CCATTCAAAATACAAACATA+TGG | + | chr2_1:13380976-13380995 | Msa0196270:intron | 25.0% |
| !! | TTGAAACCGAAGTAATTTTT+AGG | - | chr2_1:13381146-13381165 | None:intergenic | 25.0% |
| !! | GAACACTATTGGTATTTTAT+AGG | - | chr2_1:13381212-13381231 | None:intergenic | 25.0% |
| !! | ATGGTTACTTTATATAACTG+CGG | - | chr2_1:13381450-13381469 | None:intergenic | 25.0% |
| ! | TATAGTTAGATAAACATGCA+TGG | - | chr2_1:13381613-13381632 | None:intergenic | 25.0% |
| ! | GCATGTTTATCTAACTATAT+TGG | + | chr2_1:13381614-13381633 | Msa0196270:intron | 25.0% |
| ! | CTATCTGTAGTAACAAATTA+TGG | - | chr2_1:13381774-13381793 | None:intergenic | 25.0% |
| !! | CCTTTTAATATAGAAACAAG+GGG | - | chr2_1:13379596-13379615 | None:intergenic | 25.0% |
| !! | CCCTTTTAATATAGAAACAA+GGG | - | chr2_1:13379597-13379616 | None:intergenic | 25.0% |
| !!! | CCCTTGTTTCTATATTAAAA+GGG | + | chr2_1:13379594-13379613 | Msa0196270:CDS | 25.0% |
| !! | ACCCTTTTAATATAGAAACA+AGG | - | chr2_1:13379598-13379617 | None:intergenic | 25.0% |
| ! | TTAGCAATGAAATTAAAGAG+TGG | - | chr2_1:13379686-13379705 | None:intergenic | 25.0% |
| !!! | TTTTTGTAATTTGTGTGTGA+TGG | + | chr2_1:13379963-13379982 | Msa0196270:intron | 25.0% |
| ! | ATATCAAATTGATGAAGTGT+TGG | - | chr2_1:13380154-13380173 | None:intergenic | 25.0% |
| ! | AGATGTAGAAGTGAAAATTT+CGG | + | chr2_1:13380228-13380247 | Msa0196270:CDS | 25.0% |
| !! | TCTAAGCAACTGAAATTTTT+AGG | + | chr2_1:13380568-13380587 | Msa0196270:intron | 25.0% |
| !!! | ATTTTTAGGCTTGTTCAATT+AGG | + | chr2_1:13380582-13380601 | Msa0196270:intron | 25.0% |
| !!! | TTTTTAGGCTTGTTCAATTA+GGG | + | chr2_1:13380583-13380602 | Msa0196270:intron | 25.0% |
| ! | TAATGTAGCAGCTATAAATA+TGG | - | chr2_1:13380700-13380719 | None:intergenic | 25.0% |
| !!! | GTTTGTATTTTGAATGGTTT+TGG | - | chr2_1:13380973-13380992 | None:intergenic | 25.0% |
| !!! | CCATATGTTTGTATTTTGAA+TGG | - | chr2_1:13380979-13380998 | None:intergenic | 25.0% |
| ! | CCATTCAAAATACAAACATA+TGG | + | chr2_1:13380976-13380995 | Msa0196270:intron | 25.0% |
| !! | TTGAAACCGAAGTAATTTTT+AGG | - | chr2_1:13381146-13381165 | None:intergenic | 25.0% |
| !! | GAACACTATTGGTATTTTAT+AGG | - | chr2_1:13381212-13381231 | None:intergenic | 25.0% |
| !! | ATGGTTACTTTATATAACTG+CGG | - | chr2_1:13381450-13381469 | None:intergenic | 25.0% |
| ! | TATAGTTAGATAAACATGCA+TGG | - | chr2_1:13381613-13381632 | None:intergenic | 25.0% |
| ! | GCATGTTTATCTAACTATAT+TGG | + | chr2_1:13381614-13381633 | Msa0196270:intron | 25.0% |
| ! | CTATCTGTAGTAACAAATTA+TGG | - | chr2_1:13381774-13381793 | None:intergenic | 25.0% |
| !! | CCCCTTGTTTCTATATTAAA+AGG | + | chr2_1:13379593-13379612 | Msa0196270:CDS | 30.0% |
| TTGTCTCTAAATATATGACG+AGG | + | chr2_1:13379910-13379929 | Msa0196270:intron | 30.0% | |
| !! | ATTCTAAAGCTTGAAGAACT+TGG | - | chr2_1:13380072-13380091 | None:intergenic | 30.0% |
| ! | TAAACTCTTCCTTCTCTTTT+GGG | - | chr2_1:13380095-13380114 | None:intergenic | 30.0% |
| ! | TTAAACTCTTCCTTCTCTTT+TGG | - | chr2_1:13380096-13380115 | None:intergenic | 30.0% |
| CATCAATTTGATATCTCTTC+CGG | + | chr2_1:13380160-13380179 | Msa0196270:CDS | 30.0% | |
| GATGTAGAAGTGAAAATTTC+GGG | + | chr2_1:13380229-13380248 | Msa0196270:CDS | 30.0% | |
| !! | ACTTTTGCTATGAAATGGTA+GGG | + | chr2_1:13380643-13380662 | Msa0196270:intron | 30.0% |
| ! | AAAAGTAAAAGGGTGTAGAA+TGG | - | chr2_1:13380811-13380830 | None:intergenic | 30.0% |
| ! | TTTGGCTTAATTCCTAATCT+AGG | - | chr2_1:13380940-13380959 | None:intergenic | 30.0% |
| CTCAAAGACTAAGGATATAA+AGG | - | chr2_1:13381039-13381058 | None:intergenic | 30.0% | |
| ! | CTTTATATCCTTAGTCTTTG+AGG | + | chr2_1:13381037-13381056 | Msa0196270:intron | 30.0% |
| ! | TATTTTCTCCTCAAAGACTA+AGG | - | chr2_1:13381048-13381067 | None:intergenic | 30.0% |
| TTGAGGAGAAAATAATCTCA+TGG | + | chr2_1:13381054-13381073 | Msa0196270:intron | 30.0% | |
| AAATTAGTGTTTGTCCTTTC+CGG | + | chr2_1:13381107-13381126 | Msa0196270:intron | 30.0% | |
| AAGCCACCTAAAAATTACTT+CGG | + | chr2_1:13381137-13381156 | Msa0196270:intron | 30.0% | |
| !! | AAACCGAAGTAATTTTTAGG+TGG | - | chr2_1:13381143-13381162 | None:intergenic | 30.0% |
| GATTGGATTACATTAGTAAG+AGG | - | chr2_1:13381306-13381325 | None:intergenic | 30.0% | |
| !! | CCCCTTGTTTCTATATTAAA+AGG | + | chr2_1:13379593-13379612 | Msa0196270:CDS | 30.0% |
| TTGTCTCTAAATATATGACG+AGG | + | chr2_1:13379910-13379929 | Msa0196270:intron | 30.0% | |
| !! | ATTCTAAAGCTTGAAGAACT+TGG | - | chr2_1:13380072-13380091 | None:intergenic | 30.0% |
| ! | TAAACTCTTCCTTCTCTTTT+GGG | - | chr2_1:13380095-13380114 | None:intergenic | 30.0% |
| ! | TTAAACTCTTCCTTCTCTTT+TGG | - | chr2_1:13380096-13380115 | None:intergenic | 30.0% |
| CATCAATTTGATATCTCTTC+CGG | + | chr2_1:13380160-13380179 | Msa0196270:CDS | 30.0% | |
| GATGTAGAAGTGAAAATTTC+GGG | + | chr2_1:13380229-13380248 | Msa0196270:CDS | 30.0% | |
| !! | ACTTTTGCTATGAAATGGTA+GGG | + | chr2_1:13380643-13380662 | Msa0196270:intron | 30.0% |
| ! | AAAAGTAAAAGGGTGTAGAA+TGG | - | chr2_1:13380811-13380830 | None:intergenic | 30.0% |
| ! | TTTGGCTTAATTCCTAATCT+AGG | - | chr2_1:13380940-13380959 | None:intergenic | 30.0% |
| CTCAAAGACTAAGGATATAA+AGG | - | chr2_1:13381039-13381058 | None:intergenic | 30.0% | |
| ! | CTTTATATCCTTAGTCTTTG+AGG | + | chr2_1:13381037-13381056 | Msa0196270:intron | 30.0% |
| ! | TATTTTCTCCTCAAAGACTA+AGG | - | chr2_1:13381048-13381067 | None:intergenic | 30.0% |
| TTGAGGAGAAAATAATCTCA+TGG | + | chr2_1:13381054-13381073 | Msa0196270:intron | 30.0% | |
| AAATTAGTGTTTGTCCTTTC+CGG | + | chr2_1:13381107-13381126 | Msa0196270:intron | 30.0% | |
| AAGCCACCTAAAAATTACTT+CGG | + | chr2_1:13381137-13381156 | Msa0196270:intron | 30.0% | |
| !! | AAACCGAAGTAATTTTTAGG+TGG | - | chr2_1:13381143-13381162 | None:intergenic | 30.0% |
| GATTGGATTACATTAGTAAG+AGG | - | chr2_1:13381306-13381325 | None:intergenic | 30.0% | |
| ACAGATGAATGAACATCTCA+AGG | + | chr2_1:13379555-13379574 | Msa0196270:CDS | 35.0% | |
| !! | GTAATTTGTGTGTGATGGAT+TGG | + | chr2_1:13379968-13379987 | Msa0196270:intron | 35.0% |
| GAGACCAAGCATCAATAATA+GGG | + | chr2_1:13380017-13380036 | Msa0196270:CDS | 35.0% | |
| AGACCAAGCATCAATAATAG+GGG | + | chr2_1:13380018-13380037 | Msa0196270:CDS | 35.0% | |
| !! | CTTTAGAATCCCAAAAGAGA+AGG | + | chr2_1:13380083-13380102 | Msa0196270:CDS | 35.0% |
| ATAATCCTTGAAACTTGACC+TGG | - | chr2_1:13380292-13380311 | None:intergenic | 35.0% | |
| TCATCTTAACATCAGTAGCA+TGG | + | chr2_1:13380345-13380364 | Msa0196270:CDS | 35.0% | |
| GACCACAAATTGGTATAGAA+CGG | - | chr2_1:13380377-13380396 | None:intergenic | 35.0% | |
| TCTATACCAATTTGTGGTCA+AGG | + | chr2_1:13380378-13380397 | Msa0196270:CDS | 35.0% | |
| ! | GTTTTACCTTGACCACAAAT+TGG | - | chr2_1:13380387-13380406 | None:intergenic | 35.0% |
| !!! | ACGTCACTTTTGCTATGAAA+TGG | + | chr2_1:13380638-13380657 | Msa0196270:intron | 35.0% |
| !! | CACTTTTGCTATGAAATGGT+AGG | + | chr2_1:13380642-13380661 | Msa0196270:intron | 35.0% |
| ! | TTTTAATCTTGCCTGCTTGT+GGG | - | chr2_1:13380890-13380909 | None:intergenic | 35.0% |
| ! | GGAGGTTCATTTTGTTAGTA+GGG | - | chr2_1:13380919-13380938 | None:intergenic | 35.0% |
| ! | AGGAGGTTCATTTTGTTAGT+AGG | - | chr2_1:13380920-13380939 | None:intergenic | 35.0% |
| CAAAATGAACCTCCTAGATT+AGG | + | chr2_1:13380925-13380944 | Msa0196270:intron | 35.0% | |
| TAGGAATTAAGCCAAAGAAG+AGG | + | chr2_1:13380944-13380963 | Msa0196270:intron | 35.0% | |
| AGGAATTAAGCCAAAGAAGA+GGG | + | chr2_1:13380945-13380964 | Msa0196270:intron | 35.0% | |
| CCTACCTTGCTAGAAAAATA+GGG | - | chr2_1:13381004-13381023 | None:intergenic | 35.0% | |
| TCCTACCTTGCTAGAAAAAT+AGG | - | chr2_1:13381005-13381024 | None:intergenic | 35.0% | |
| GGAAAGGACAAACACTAATT+TGG | - | chr2_1:13381108-13381127 | None:intergenic | 35.0% | |
| TTTAGGTGGCTTCAAAATAC+CGG | - | chr2_1:13381129-13381148 | None:intergenic | 35.0% | |
| ! | AGTAAGAGGTGTAGATAGAA+GGG | - | chr2_1:13381292-13381311 | None:intergenic | 35.0% |
| ! | TAGTAAGAGGTGTAGATAGA+AGG | - | chr2_1:13381293-13381312 | None:intergenic | 35.0% |
| GAAATAGTAATGGTGCTTTG+TGG | + | chr2_1:13381395-13381414 | Msa0196270:intron | 35.0% | |
| AAAGTAACCATGTACGGTTT+CGG | + | chr2_1:13381459-13381478 | Msa0196270:intron | 35.0% | |
| GTATGTAAGAACCATGCAAA+AGG | - | chr2_1:13381727-13381746 | None:intergenic | 35.0% | |
| TTTGTTACTACAGATAGAGC+TGG | + | chr2_1:13381777-13381796 | Msa0196270:intron | 35.0% | |
| TTGTTACTACAGATAGAGCT+GGG | + | chr2_1:13381778-13381797 | Msa0196270:intron | 35.0% | |
| ! | ACAACAAAGCTTTTGTTCAG+AGG | + | chr2_1:13381837-13381856 | Msa0196270:CDS | 35.0% |
| ACAGATGAATGAACATCTCA+AGG | + | chr2_1:13379555-13379574 | Msa0196270:CDS | 35.0% | |
| !! | GTAATTTGTGTGTGATGGAT+TGG | + | chr2_1:13379968-13379987 | Msa0196270:intron | 35.0% |
| GAGACCAAGCATCAATAATA+GGG | + | chr2_1:13380017-13380036 | Msa0196270:CDS | 35.0% | |
| AGACCAAGCATCAATAATAG+GGG | + | chr2_1:13380018-13380037 | Msa0196270:CDS | 35.0% | |
| !! | CTTTAGAATCCCAAAAGAGA+AGG | + | chr2_1:13380083-13380102 | Msa0196270:CDS | 35.0% |
| ATAATCCTTGAAACTTGACC+TGG | - | chr2_1:13380292-13380311 | None:intergenic | 35.0% | |
| TCATCTTAACATCAGTAGCA+TGG | + | chr2_1:13380345-13380364 | Msa0196270:CDS | 35.0% | |
| GACCACAAATTGGTATAGAA+CGG | - | chr2_1:13380377-13380396 | None:intergenic | 35.0% | |
| TCTATACCAATTTGTGGTCA+AGG | + | chr2_1:13380378-13380397 | Msa0196270:CDS | 35.0% | |
| ! | GTTTTACCTTGACCACAAAT+TGG | - | chr2_1:13380387-13380406 | None:intergenic | 35.0% |
| !!! | ACGTCACTTTTGCTATGAAA+TGG | + | chr2_1:13380638-13380657 | Msa0196270:intron | 35.0% |
| !! | CACTTTTGCTATGAAATGGT+AGG | + | chr2_1:13380642-13380661 | Msa0196270:intron | 35.0% |
| ! | TTTTAATCTTGCCTGCTTGT+GGG | - | chr2_1:13380890-13380909 | None:intergenic | 35.0% |
| ! | GGAGGTTCATTTTGTTAGTA+GGG | - | chr2_1:13380919-13380938 | None:intergenic | 35.0% |
| ! | AGGAGGTTCATTTTGTTAGT+AGG | - | chr2_1:13380920-13380939 | None:intergenic | 35.0% |
| CAAAATGAACCTCCTAGATT+AGG | + | chr2_1:13380925-13380944 | Msa0196270:intron | 35.0% | |
| TAGGAATTAAGCCAAAGAAG+AGG | + | chr2_1:13380944-13380963 | Msa0196270:intron | 35.0% | |
| AGGAATTAAGCCAAAGAAGA+GGG | + | chr2_1:13380945-13380964 | Msa0196270:intron | 35.0% | |
| CCTACCTTGCTAGAAAAATA+GGG | - | chr2_1:13381004-13381023 | None:intergenic | 35.0% | |
| TCCTACCTTGCTAGAAAAAT+AGG | - | chr2_1:13381005-13381024 | None:intergenic | 35.0% | |
| GGAAAGGACAAACACTAATT+TGG | - | chr2_1:13381108-13381127 | None:intergenic | 35.0% | |
| TTTAGGTGGCTTCAAAATAC+CGG | - | chr2_1:13381129-13381148 | None:intergenic | 35.0% | |
| ! | AGTAAGAGGTGTAGATAGAA+GGG | - | chr2_1:13381292-13381311 | None:intergenic | 35.0% |
| ! | TAGTAAGAGGTGTAGATAGA+AGG | - | chr2_1:13381293-13381312 | None:intergenic | 35.0% |
| GAAATAGTAATGGTGCTTTG+TGG | + | chr2_1:13381395-13381414 | Msa0196270:intron | 35.0% | |
| AAAGTAACCATGTACGGTTT+CGG | + | chr2_1:13381459-13381478 | Msa0196270:intron | 35.0% | |
| GTATGTAAGAACCATGCAAA+AGG | - | chr2_1:13381727-13381746 | None:intergenic | 35.0% | |
| TTTGTTACTACAGATAGAGC+TGG | + | chr2_1:13381777-13381796 | Msa0196270:intron | 35.0% | |
| TTGTTACTACAGATAGAGCT+GGG | + | chr2_1:13381778-13381797 | Msa0196270:intron | 35.0% | |
| ! | ACAACAAAGCTTTTGTTCAG+AGG | + | chr2_1:13381837-13381856 | Msa0196270:CDS | 35.0% |
| CTATGTGAGACATGATCGAT+TGG | - | chr2_1:13379513-13379532 | None:intergenic | 40.0% | |
| GGAGACCAAGCATCAATAAT+AGG | + | chr2_1:13380016-13380035 | Msa0196270:CDS | 40.0% | |
| GACCAAGCATCAATAATAGG+GGG | + | chr2_1:13380019-13380038 | Msa0196270:CDS | 40.0% | |
| !! | TAGTTCCTTGAAAGCATCAC+CGG | - | chr2_1:13380182-13380201 | None:intergenic | 40.0% |
| !! | TCCAAACGTGATTTTGAGAG+TGG | + | chr2_1:13380252-13380271 | Msa0196270:CDS | 40.0% |
| ACCACTCTCAAAATCACGTT+TGG | - | chr2_1:13380256-13380275 | None:intergenic | 40.0% | |
| GTGGTTTCTCAAAGAATTCC+AGG | + | chr2_1:13380271-13380290 | Msa0196270:CDS | 40.0% | |
| GAATTCCAGGTCAAGTTTCA+AGG | + | chr2_1:13380284-13380303 | Msa0196270:CDS | 40.0% | |
| GACCGTTCTATACCAATTTG+TGG | + | chr2_1:13380372-13380391 | Msa0196270:CDS | 40.0% | |
| ! | AGGCTTGTTCAATTAGGGTT+TGG | + | chr2_1:13380588-13380607 | Msa0196270:intron | 40.0% |
| ! | AAAGTACTTAACCCACAAGC+AGG | + | chr2_1:13380876-13380895 | Msa0196270:intron | 40.0% |
| ! | CTTTTAATCTTGCCTGCTTG+TGG | - | chr2_1:13380891-13380910 | None:intergenic | 40.0% |
| GGCTTAATTCCTAATCTAGG+AGG | - | chr2_1:13380937-13380956 | None:intergenic | 40.0% | |
| !! | CCCTATTTTTCTAGCAAGGT+AGG | + | chr2_1:13381001-13381020 | Msa0196270:intron | 40.0% |
| ! | GTAAGAGGTGTAGATAGAAG+GGG | - | chr2_1:13381291-13381310 | None:intergenic | 40.0% |
| ATAACTGCGGAGTTTCATGT+TGG | - | chr2_1:13381437-13381456 | None:intergenic | 40.0% | |
| AAGCTTTACGTGTGGATTCA+CGG | - | chr2_1:13381494-13381513 | None:intergenic | 40.0% | |
| AAGTTTGGAGGAACTAGCTA+TGG | + | chr2_1:13381810-13381829 | Msa0196270:CDS | 40.0% | |
| CTATGTGAGACATGATCGAT+TGG | - | chr2_1:13379513-13379532 | None:intergenic | 40.0% | |
| GGAGACCAAGCATCAATAAT+AGG | + | chr2_1:13380016-13380035 | Msa0196270:CDS | 40.0% | |
| GACCAAGCATCAATAATAGG+GGG | + | chr2_1:13380019-13380038 | Msa0196270:CDS | 40.0% | |
| !! | TAGTTCCTTGAAAGCATCAC+CGG | - | chr2_1:13380182-13380201 | None:intergenic | 40.0% |
| !! | TCCAAACGTGATTTTGAGAG+TGG | + | chr2_1:13380252-13380271 | Msa0196270:CDS | 40.0% |
| ACCACTCTCAAAATCACGTT+TGG | - | chr2_1:13380256-13380275 | None:intergenic | 40.0% | |
| GTGGTTTCTCAAAGAATTCC+AGG | + | chr2_1:13380271-13380290 | Msa0196270:CDS | 40.0% | |
| GAATTCCAGGTCAAGTTTCA+AGG | + | chr2_1:13380284-13380303 | Msa0196270:CDS | 40.0% | |
| GACCGTTCTATACCAATTTG+TGG | + | chr2_1:13380372-13380391 | Msa0196270:CDS | 40.0% | |
| ! | AGGCTTGTTCAATTAGGGTT+TGG | + | chr2_1:13380588-13380607 | Msa0196270:intron | 40.0% |
| ! | AAAGTACTTAACCCACAAGC+AGG | + | chr2_1:13380876-13380895 | Msa0196270:intron | 40.0% |
| ! | CTTTTAATCTTGCCTGCTTG+TGG | - | chr2_1:13380891-13380910 | None:intergenic | 40.0% |
| GGCTTAATTCCTAATCTAGG+AGG | - | chr2_1:13380937-13380956 | None:intergenic | 40.0% | |
| !! | CCCTATTTTTCTAGCAAGGT+AGG | + | chr2_1:13381001-13381020 | Msa0196270:intron | 40.0% |
| ! | GTAAGAGGTGTAGATAGAAG+GGG | - | chr2_1:13381291-13381310 | None:intergenic | 40.0% |
| ATAACTGCGGAGTTTCATGT+TGG | - | chr2_1:13381437-13381456 | None:intergenic | 40.0% | |
| AAGCTTTACGTGTGGATTCA+CGG | - | chr2_1:13381494-13381513 | None:intergenic | 40.0% | |
| AAGTTTGGAGGAACTAGCTA+TGG | + | chr2_1:13381810-13381829 | Msa0196270:CDS | 40.0% | |
| TGTCTCACATAGCTGTTGAG+AGG | + | chr2_1:13379521-13379540 | Msa0196270:CDS | 45.0% | |
| ACATAGCTGTTGAGAGGAAC+AGG | + | chr2_1:13379527-13379546 | Msa0196270:CDS | 45.0% | |
| CTCCCCCTATTATTGATGCT+TGG | - | chr2_1:13380024-13380043 | None:intergenic | 45.0% | |
| !!! | AGTGTTGGCTGCAGTGTTTT+TGG | - | chr2_1:13380139-13380158 | None:intergenic | 45.0% |
| GGTGATGCTTTCAAGGAACT+AGG | + | chr2_1:13380181-13380200 | Msa0196270:CDS | 45.0% | |
| !! | CTGAAGGTAACTTGCTCTTC+TGG | + | chr2_1:13380773-13380792 | Msa0196270:intron | 45.0% |
| !!! | GGTTTTGGAACCCTCTTCTT+TGG | - | chr2_1:13380958-13380977 | None:intergenic | 45.0% |
| !! | GGCACCCTATTTTTCTAGCA+AGG | + | chr2_1:13380997-13381016 | Msa0196270:intron | 45.0% |
| GTGGCTTCAAAATACCGGAA+AGG | - | chr2_1:13381124-13381143 | None:intergenic | 45.0% | |
| TGGTTGAGGTGGAACACTAT+TGG | - | chr2_1:13381223-13381242 | None:intergenic | 45.0% | |
| !! | AATGGATTGTGTGTGGTGTC+CGG | - | chr2_1:13381249-13381268 | None:intergenic | 45.0% |
| !! | ATTAGGTTGGAGGGAGAGAA+TGG | - | chr2_1:13381267-13381286 | None:intergenic | 45.0% |
| !! | AGATAGAAGGGGCATTAGGT+TGG | - | chr2_1:13381280-13381299 | None:intergenic | 45.0% |
| !! | GTGTAGATAGAAGGGGCATT+AGG | - | chr2_1:13381284-13381303 | None:intergenic | 45.0% |
| AAGGAAACCGAAACCGTACA+TGG | - | chr2_1:13381469-13381488 | None:intergenic | 45.0% | |
| AGCTTTACGTGTGGATTCAC+GGG | - | chr2_1:13381493-13381512 | None:intergenic | 45.0% | |
| GCATGTTGAAGCTTTACGTG+TGG | - | chr2_1:13381502-13381521 | None:intergenic | 45.0% | |
| ! | TGCAAGATGTGCCTTTTGCA+TGG | + | chr2_1:13381713-13381732 | Msa0196270:intron | 45.0% |
| GCTGGGATGTCAACTAAGTT+TGG | + | chr2_1:13381795-13381814 | Msa0196270:CDS | 45.0% | |
| GGGATGTCAACTAAGTTTGG+AGG | + | chr2_1:13381798-13381817 | Msa0196270:CDS | 45.0% | |
| TGTCTCACATAGCTGTTGAG+AGG | + | chr2_1:13379521-13379540 | Msa0196270:CDS | 45.0% | |
| ACATAGCTGTTGAGAGGAAC+AGG | + | chr2_1:13379527-13379546 | Msa0196270:CDS | 45.0% | |
| CTCCCCCTATTATTGATGCT+TGG | - | chr2_1:13380024-13380043 | None:intergenic | 45.0% | |
| !!! | AGTGTTGGCTGCAGTGTTTT+TGG | - | chr2_1:13380139-13380158 | None:intergenic | 45.0% |
| GGTGATGCTTTCAAGGAACT+AGG | + | chr2_1:13380181-13380200 | Msa0196270:CDS | 45.0% | |
| !! | CTGAAGGTAACTTGCTCTTC+TGG | + | chr2_1:13380773-13380792 | Msa0196270:intron | 45.0% |
| !!! | GGTTTTGGAACCCTCTTCTT+TGG | - | chr2_1:13380958-13380977 | None:intergenic | 45.0% |
| !! | GGCACCCTATTTTTCTAGCA+AGG | + | chr2_1:13380997-13381016 | Msa0196270:intron | 45.0% |
| GTGGCTTCAAAATACCGGAA+AGG | - | chr2_1:13381124-13381143 | None:intergenic | 45.0% | |
| TGGTTGAGGTGGAACACTAT+TGG | - | chr2_1:13381223-13381242 | None:intergenic | 45.0% | |
| !! | AATGGATTGTGTGTGGTGTC+CGG | - | chr2_1:13381249-13381268 | None:intergenic | 45.0% |
| !! | ATTAGGTTGGAGGGAGAGAA+TGG | - | chr2_1:13381267-13381286 | None:intergenic | 45.0% |
| !! | AGATAGAAGGGGCATTAGGT+TGG | - | chr2_1:13381280-13381299 | None:intergenic | 45.0% |
| !! | GTGTAGATAGAAGGGGCATT+AGG | - | chr2_1:13381284-13381303 | None:intergenic | 45.0% |
| AAGGAAACCGAAACCGTACA+TGG | - | chr2_1:13381469-13381488 | None:intergenic | 45.0% | |
| AGCTTTACGTGTGGATTCAC+GGG | - | chr2_1:13381493-13381512 | None:intergenic | 45.0% | |
| GCATGTTGAAGCTTTACGTG+TGG | - | chr2_1:13381502-13381521 | None:intergenic | 45.0% | |
| ! | TGCAAGATGTGCCTTTTGCA+TGG | + | chr2_1:13381713-13381732 | Msa0196270:intron | 45.0% |
| GCTGGGATGTCAACTAAGTT+TGG | + | chr2_1:13381795-13381814 | Msa0196270:CDS | 45.0% | |
| GGGATGTCAACTAAGTTTGG+AGG | + | chr2_1:13381798-13381817 | Msa0196270:CDS | 45.0% | |
| !!! | TCAATTTATTTTTTTATTTT+AGG | + | chr2_1:13379994-13380013 | Msa0196270:intron | 5.0% |
| !!! | CAATTTATTTTTTTATTTTA+GGG | + | chr2_1:13379995-13380014 | Msa0196270:intron | 5.0% |
| !! | TAAAAAAAATAAAAGTAAAA+GGG | - | chr2_1:13380821-13380840 | None:intergenic | 5.0% |
| !!! | TCAATTTATTTTTTTATTTT+AGG | + | chr2_1:13379994-13380013 | Msa0196270:intron | 5.0% |
| !!! | CAATTTATTTTTTTATTTTA+GGG | + | chr2_1:13379995-13380014 | Msa0196270:intron | 5.0% |
| !! | TAAAAAAAATAAAAGTAAAA+GGG | - | chr2_1:13380821-13380840 | None:intergenic | 5.0% |
| AAGAGTTTAAGCCCTAGCCC+AGG | + | chr2_1:13380106-13380125 | Msa0196270:CDS | 50.0% | |
| !!! | GTGTTTTTGGACTCGGACCT+GGG | - | chr2_1:13380126-13380145 | None:intergenic | 50.0% |
| !!! | AGTGTTTTTGGACTCGGACC+TGG | - | chr2_1:13380127-13380146 | None:intergenic | 50.0% |
| !!! | GGCTGCAGTGTTTTTGGACT+CGG | - | chr2_1:13380133-13380152 | None:intergenic | 50.0% |
| CTCTTCCGGTGATGCTTTCA+AGG | + | chr2_1:13380174-13380193 | Msa0196270:CDS | 50.0% | |
| TGTTCCACCTCAACCATTCC+CGG | + | chr2_1:13381227-13381246 | Msa0196270:intron | 50.0% | |
| ! | ATGGATTGTGTGTGGTGTCC+GGG | - | chr2_1:13381248-13381267 | None:intergenic | 50.0% |
| !! | GGGAGAGAATGGATTGTGTG+TGG | - | chr2_1:13381256-13381275 | None:intergenic | 50.0% |
| !! | AGAAGGGGCATTAGGTTGGA+GGG | - | chr2_1:13381276-13381295 | None:intergenic | 50.0% |
| !! | TAGAAGGGGCATTAGGTTGG+AGG | - | chr2_1:13381277-13381296 | None:intergenic | 50.0% |
| GCTTTACGTGTGGATTCACG+GGG | - | chr2_1:13381492-13381511 | None:intergenic | 50.0% | |
| AAGAGTTTAAGCCCTAGCCC+AGG | + | chr2_1:13380106-13380125 | Msa0196270:CDS | 50.0% | |
| !!! | GTGTTTTTGGACTCGGACCT+GGG | - | chr2_1:13380126-13380145 | None:intergenic | 50.0% |
| !!! | AGTGTTTTTGGACTCGGACC+TGG | - | chr2_1:13380127-13380146 | None:intergenic | 50.0% |
| !!! | GGCTGCAGTGTTTTTGGACT+CGG | - | chr2_1:13380133-13380152 | None:intergenic | 50.0% |
| CTCTTCCGGTGATGCTTTCA+AGG | + | chr2_1:13380174-13380193 | Msa0196270:CDS | 50.0% | |
| TGTTCCACCTCAACCATTCC+CGG | + | chr2_1:13381227-13381246 | Msa0196270:intron | 50.0% | |
| ! | ATGGATTGTGTGTGGTGTCC+GGG | - | chr2_1:13381248-13381267 | None:intergenic | 50.0% |
| !! | GGGAGAGAATGGATTGTGTG+TGG | - | chr2_1:13381256-13381275 | None:intergenic | 50.0% |
| !! | AGAAGGGGCATTAGGTTGGA+GGG | - | chr2_1:13381276-13381295 | None:intergenic | 50.0% |
| !! | TAGAAGGGGCATTAGGTTGG+AGG | - | chr2_1:13381277-13381296 | None:intergenic | 50.0% |
| GCTTTACGTGTGGATTCACG+GGG | - | chr2_1:13381492-13381511 | None:intergenic | 50.0% | |
| TTGTGTGTGGTGTCCGGGAA+TGG | - | chr2_1:13381243-13381262 | None:intergenic | 55.0% | |
| TACGTGTGGATTCACGGGGA+AGG | - | chr2_1:13381488-13381507 | None:intergenic | 55.0% | |
| TTGTGTGTGGTGTCCGGGAA+TGG | - | chr2_1:13381243-13381262 | None:intergenic | 55.0% | |
| TACGTGTGGATTCACGGGGA+AGG | - | chr2_1:13381488-13381507 | None:intergenic | 55.0% | |
| TTGGACTCGGACCTGGGCTA+GGG | - | chr2_1:13380120-13380139 | None:intergenic | 60.0% | |
| TTTGGACTCGGACCTGGGCT+AGG | - | chr2_1:13380121-13380140 | None:intergenic | 60.0% | |
| GTGTCCGGGAATGGTTGAGG+TGG | - | chr2_1:13381234-13381253 | None:intergenic | 60.0% | |
| GTGGTGTCCGGGAATGGTTG+AGG | - | chr2_1:13381237-13381256 | None:intergenic | 60.0% | |
| TTGGACTCGGACCTGGGCTA+GGG | - | chr2_1:13380120-13380139 | None:intergenic | 60.0% | |
| TTTGGACTCGGACCTGGGCT+AGG | - | chr2_1:13380121-13380140 | None:intergenic | 60.0% | |
| GTGTCCGGGAATGGTTGAGG+TGG | - | chr2_1:13381234-13381253 | None:intergenic | 60.0% | |
| GTGGTGTCCGGGAATGGTTG+AGG | - | chr2_1:13381237-13381256 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 13379505 | 13381953 | 13379505 | ID=Msa0196270;Name=Msa0196270 |
| chr2_1 | mRNA | 13379505 | 13381953 | 13379505 | ID=Msa0196270-mRNA-1;Parent=Msa0196270;Name=Msa0196270-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.5|0.33|1|1|1|3|71|195 |
| chr2_1 | exon | 13379505 | 13379615 | 13379505 | ID=Msa0196270-mRNA-1:exon:5773;Parent=Msa0196270-mRNA-1 |
| chr2_1 | exon | 13380016 | 13380399 | 13380016 | ID=Msa0196270-mRNA-1:exon:5774;Parent=Msa0196270-mRNA-1 |
| chr2_1 | exon | 13381790 | 13381953 | 13381790 | ID=Msa0196270-mRNA-1:exon:5775;Parent=Msa0196270-mRNA-1 |
| chr2_1 | CDS | 13379505 | 13379615 | 13379505 | ID=Msa0196270-mRNA-1:cds;Parent=Msa0196270-mRNA-1 |
| chr2_1 | CDS | 13380016 | 13380399 | 13380016 | ID=Msa0196270-mRNA-1:cds;Parent=Msa0196270-mRNA-1 |
| chr2_1 | CDS | 13381790 | 13381882 | 13381790 | ID=Msa0196270-mRNA-1:cds;Parent=Msa0196270-mRNA-1 |
| chr2_1 | three_prime_UTR | 13381883 | 13381953 | 13381883 | ID=Msa0196270-mRNA-1:three_prime_utr;Parent=Msa0196270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
