AlfalfaGEDB | Msa0238100

M. sativa cultivar zhongmu-4 / Msa0238100

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008544 GO:0009791 GO:0009888 GO:0009889 GO:0009913 GO:0009987 GO:0010374 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0030855 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0060429 GO:0065007 GO:0080090 GO:0090558 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0238100	XP_013462737.1	98.974	195	2	0	1	195	1	195	3.72e-137	391

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0238100	sp\|Q9M8K6\|MUTE_ARATH	66.154	195	59	2	1	188	1	195	1.12e-81	244

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0238100	A0A072V4N0	98.974	195	2	0	1	195	1	195	1.77e-137	391

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TFs/TRs:

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Gene ID	Type	Classification
Msa0238100	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0196270	Msa0238100	0.829909	3.954263e-55	-8.615850e-47
Msa0238100	Msa0275520	0.810286	1.242990e-50	-8.615850e-47
Msa0238100	Msa0315990	0.827313	1.676076e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0238100	MtrunA17_Chr2g0287761	98.974	195	2	0	1	195	1	195	3.42e-141	391
Msa0238100	MtrunA17_Chr1g0158941	49.029	206	84	2	1	185	87	292	4.89e-59	186
Msa0238100	MtrunA17_Chr0c01g0489461	46.114	193	94	2	1	183	195	387	4.06e-49	164
Msa0238100	MtrunA17_Chr3g0126381	44.000	200	69	5	30	186	1	200	1.03e-43	144
Msa0238100	MtrunA17_Chr3g0132471	39.175	194	101	5	1	181	116	305	4.45e-38	133
Msa0238100	MtrunA17_Chr1g0191571	40.314	191	107	3	1	184	136	326	1.74e-37	132
Msa0238100	MtrunA17_Chr7g0273081	40.107	187	107	3	1	183	116	301	8.02e-37	130
Msa0238100	MtrunA17_Chr8g0345871	44.086	186	95	2	1	185	181	358	1.08e-34	125
Msa0238100	MtrunA17_Chr8g0366551	37.356	174	106	2	1	172	124	296	1.90e-34	124
Msa0238100	MtrunA17_Chr5g0426851	36.702	188	114	3	1	183	100	287	2.03e-33	120

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0238100	AT3G06120.1	66.154	195	59	2	1	188	1	195	1.14e-82	244
Msa0238100	AT3G24140.2	46.040	202	89	3	1	186	197	394	2.34e-50	167
Msa0238100	AT3G24140.1	46.040	202	89	3	1	186	197	394	3.06e-50	167
Msa0238100	AT4G01460.1	43.085	188	102	3	1	185	115	300	2.02e-37	132
Msa0238100	AT4G01460.2	43.085	188	102	3	1	185	115	300	2.02e-37	132
Msa0238100	AT1G72210.1	37.895	190	105	4	1	183	125	308	5.98e-36	128
Msa0238100	AT2G46810.2	43.455	191	92	5	1	187	121	299	1.34e-35	127
Msa0238100	AT2G46810.3	43.455	191	92	5	1	187	181	359	4.53e-35	127
Msa0238100	AT2G46810.1	43.455	191	92	5	1	187	193	371	5.84e-35	127
Msa0238100	AT1G22490.1	36.757	185	113	3	1	184	115	296	3.86e-34	123

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Find 38 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAGTTTAAGCCCTAGCCC+AGG	0.572825	2_2:-11415376	Msa0238100:CDS
AAGTTTGGAGGAACTAGCTA+TGG	0.513586	2_2:-11413656	Msa0238100:CDS
AATAATGCTTTCAAGGAGCT+AGG	0.570674	2_2:-11415286	Msa0238100:CDS
ACAGATGAATGAACATCTCA+AGG	0.583323	2_2:-11415933	Msa0238100:CDS
ACATAGCTGTTGAGAGGAAC+AGG	0.425460	2_2:-11415961	Msa0238100:CDS
ACCACTTTCAAAATCACATT+TGG	0.314166	2_2:+11415214	None:intergenic
AGACCAAGCATCAATAATAG+GGG	0.616273	2_2:-11415464	Msa0238100:CDS
AGATGTAGAAGTGAAAATTT+CGG	0.352906	2_2:-11415239	Msa0238100:CDS
ATAATCCTTGAAACTTGACC+TGG	0.556421	2_2:+11415178	None:intergenic
ATATCAAATTGATGAAGTGT+TGG	0.611378	2_2:+11415331	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGTCTCTAAATATATGACG+AGG	-	chr2_2:11413916-11413935	Msa0238100:intron	30.0%
CATCAATTTGATATCTCTTC+CGG	-	chr2_2:11414182-11414201	Msa0238100:intron	30.0%
GATGTAGAAGTGAAAATTTC+GGG	-	chr2_2:11414266-11414285	Msa0238100:intron	30.0%
ACCACTTTCAAAATCACATT+TGG	+	chr2_2:11414293-11414312	None:intergenic	30.0%
CAAAATGAAACTCCTAGATT+AGG	-	chr2_2:11414963-11414982	Msa0238100:intron	30.0%
CTCAAAGACTAAGGATATAA+AGG	+	chr2_2:11415077-11415096	None:intergenic	30.0%
TTGAGGAGAAAATAATCTCA+TGG	-	chr2_2:11415092-11415111	Msa0238100:CDS	30.0%
AAATTAGTGTTTGTCCTTTC+CGG	-	chr2_2:11415145-11415164	Msa0238100:CDS	30.0%
GATTGGATTACATTAGTAAG+AGG	+	chr2_2:11415344-11415363	None:intergenic	30.0%
ACAGATGAATGAACATCTCA+AGG	-	chr2_2:11413571-11413590	Msa0238100:three_prime_UTR	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	11413536	11415990	11413536	ID=Msa0238100;Name=Msa0238100
chr2_2	mRNA	11413536	11415990	11413536	ID=Msa0238100-mRNA-1;Parent=Msa0238100;Name=Msa0238100-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|0.5\|0.33\|1\|0.5\|0.66\|3\|70\|195
chr2_2	exon	11413536	11413698	11413536	ID=Msa0238100-mRNA-1:exon:4952;Parent=Msa0238100-mRNA-1
chr2_2	exon	11415090	11415488	11415090	ID=Msa0238100-mRNA-1:exon:4951;Parent=Msa0238100-mRNA-1
chr2_2	exon	11415895	11415990	11415895	ID=Msa0238100-mRNA-1:exon:4950;Parent=Msa0238100-mRNA-1
chr2_2	CDS	11415895	11415990	11415895	ID=Msa0238100-mRNA-1:cds;Parent=Msa0238100-mRNA-1
chr2_2	CDS	11415090	11415488	11415090	ID=Msa0238100-mRNA-1:cds;Parent=Msa0238100-mRNA-1
chr2_2	CDS	11413606	11413698	11413606	ID=Msa0238100-mRNA-1:cds;Parent=Msa0238100-mRNA-1
chr2_2	three_prime_UTR	11413536	11413605	11413536	ID=Msa0238100-mRNA-1:three_prime_utr;Parent=Msa0238100-mRNA-1

Gene Sequence

>Msa0238100

ATGTCTCACATAGCTGTTGAGAGGAACAGGAGAAGACAGATGAATGAACATCTCAAGGTTTTAAGGTCGTTGACCCCTTGTTTCTATATTAAAAGGGGAGACCAAGCATCAATAATAGGGGGAGTTATAGAATTCATCAATGAATTGCACCAAGTTCTTCAAGCTTTAGAATCCCAAAAGAGAAGGAAGAGTTTAAGCCCTAGCCCAGGTCCGAGTCCAAAAACACTGCAGCCAACACTTCATCAATTTGATATCTCTTCCGGAGGAATTGGGACTAATAATGCTTTCAAGGAGCTAGGAGCGAGCTGCAACTCTTCAATTGCAGATGTAGAAGTGAAAATTTCGGGTCCAAATGTGATTTTGAAAGTGGTTTCTCAAAGAATTCCAGGTCAAGTTTCAAGGATTATAACTGTTTTAGAAAGTCTTTCATTTGAAGTTCTTCATCTTAACATCAGTAGCATGGAAGAGACCGTTCTATACCAATTTGTGGTCAAGATAGAGCTGGGATGTCAACTAAGTTTGGAGGAACTAGCTATGGAAGTACAACAAAGCTTTTGTTCAGAGGCTATGAAGTTGACTGCTGTTTGA

Protein sequence

>Msa0238100

MSHIAVERNRRRQMNEHLKVLRSLTPCFYIKRGDQASIIGGVIEFINELHQVLQALESQKRRKSLSPSPGPSPKTLQPTLHQFDISSGGIGTNNAFKELGASCNSSIADVEVKISGPNVILKVVSQRIPGQVSRIITVLESLSFEVLHLNISSMEETVLYQFVVKIELGCQLSLEELAMEVQQSFCSEAMKLTAV*