Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0238100 | XP_013462737.1 | 98.974 | 195 | 2 | 0 | 1 | 195 | 1 | 195 | 3.72e-137 | 391 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0238100 | sp|Q9M8K6|MUTE_ARATH | 66.154 | 195 | 59 | 2 | 1 | 188 | 1 | 195 | 1.12e-81 | 244 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0238100 | A0A072V4N0 | 98.974 | 195 | 2 | 0 | 1 | 195 | 1 | 195 | 1.77e-137 | 391 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0238100 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0196270 | Msa0238100 | 0.829909 | 3.954263e-55 | -8.615850e-47 |
| Msa0238100 | Msa0275520 | 0.810286 | 1.242990e-50 | -8.615850e-47 |
| Msa0238100 | Msa0315990 | 0.827313 | 1.676076e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0238100 | MtrunA17_Chr2g0287761 | 98.974 | 195 | 2 | 0 | 1 | 195 | 1 | 195 | 3.42e-141 | 391 |
| Msa0238100 | MtrunA17_Chr1g0158941 | 49.029 | 206 | 84 | 2 | 1 | 185 | 87 | 292 | 4.89e-59 | 186 |
| Msa0238100 | MtrunA17_Chr0c01g0489461 | 46.114 | 193 | 94 | 2 | 1 | 183 | 195 | 387 | 4.06e-49 | 164 |
| Msa0238100 | MtrunA17_Chr3g0126381 | 44.000 | 200 | 69 | 5 | 30 | 186 | 1 | 200 | 1.03e-43 | 144 |
| Msa0238100 | MtrunA17_Chr3g0132471 | 39.175 | 194 | 101 | 5 | 1 | 181 | 116 | 305 | 4.45e-38 | 133 |
| Msa0238100 | MtrunA17_Chr1g0191571 | 40.314 | 191 | 107 | 3 | 1 | 184 | 136 | 326 | 1.74e-37 | 132 |
| Msa0238100 | MtrunA17_Chr7g0273081 | 40.107 | 187 | 107 | 3 | 1 | 183 | 116 | 301 | 8.02e-37 | 130 |
| Msa0238100 | MtrunA17_Chr8g0345871 | 44.086 | 186 | 95 | 2 | 1 | 185 | 181 | 358 | 1.08e-34 | 125 |
| Msa0238100 | MtrunA17_Chr8g0366551 | 37.356 | 174 | 106 | 2 | 1 | 172 | 124 | 296 | 1.90e-34 | 124 |
| Msa0238100 | MtrunA17_Chr5g0426851 | 36.702 | 188 | 114 | 3 | 1 | 183 | 100 | 287 | 2.03e-33 | 120 |
| Msa0238100 | MtrunA17_Chr8g0346161 | 28.916 | 166 | 106 | 3 | 1 | 166 | 290 | 443 | 2.03e-17 | 79.3 |
| Msa0238100 | MtrunA17_Chr3g0126361 | 81.250 | 32 | 6 | 0 | 1 | 32 | 101 | 132 | 3.37e-13 | 64.3 |
| Msa0238100 | MtrunA17_Chr8g0346151 | 25.904 | 166 | 110 | 4 | 1 | 164 | 278 | 432 | 1.13e-12 | 65.9 |
| Msa0238100 | MtrunA17_Chr7g0275821 | 25.698 | 179 | 108 | 3 | 1 | 177 | 251 | 406 | 1.47e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0238100 | AT3G06120.1 | 66.154 | 195 | 59 | 2 | 1 | 188 | 1 | 195 | 1.14e-82 | 244 |
| Msa0238100 | AT3G24140.2 | 46.040 | 202 | 89 | 3 | 1 | 186 | 197 | 394 | 2.34e-50 | 167 |
| Msa0238100 | AT3G24140.1 | 46.040 | 202 | 89 | 3 | 1 | 186 | 197 | 394 | 3.06e-50 | 167 |
| Msa0238100 | AT4G01460.1 | 43.085 | 188 | 102 | 3 | 1 | 185 | 115 | 300 | 2.02e-37 | 132 |
| Msa0238100 | AT4G01460.2 | 43.085 | 188 | 102 | 3 | 1 | 185 | 115 | 300 | 2.02e-37 | 132 |
| Msa0238100 | AT1G72210.1 | 37.895 | 190 | 105 | 4 | 1 | 183 | 125 | 308 | 5.98e-36 | 128 |
| Msa0238100 | AT2G46810.2 | 43.455 | 191 | 92 | 5 | 1 | 187 | 121 | 299 | 1.34e-35 | 127 |
| Msa0238100 | AT2G46810.3 | 43.455 | 191 | 92 | 5 | 1 | 187 | 181 | 359 | 4.53e-35 | 127 |
| Msa0238100 | AT2G46810.1 | 43.455 | 191 | 92 | 5 | 1 | 187 | 193 | 371 | 5.84e-35 | 127 |
| Msa0238100 | AT1G22490.1 | 36.757 | 185 | 113 | 3 | 1 | 184 | 115 | 296 | 3.86e-34 | 123 |
| Msa0238100 | AT2G46810.4 | 44.379 | 169 | 79 | 4 | 1 | 166 | 121 | 277 | 6.90e-32 | 117 |
| Msa0238100 | AT1G72210.2 | 37.209 | 172 | 96 | 3 | 1 | 166 | 125 | 290 | 8.95e-32 | 117 |
| Msa0238100 | AT3G61950.2 | 40.957 | 188 | 96 | 6 | 1 | 185 | 127 | 302 | 3.62e-31 | 115 |
| Msa0238100 | AT5G53210.2 | 74.242 | 66 | 17 | 0 | 1 | 66 | 102 | 167 | 1.47e-30 | 114 |
| Msa0238100 | AT5G53210.2 | 53.623 | 69 | 32 | 0 | 98 | 166 | 276 | 344 | 9.38e-18 | 80.1 |
| Msa0238100 | AT3G61950.1 | 40.957 | 188 | 96 | 6 | 1 | 185 | 178 | 353 | 1.70e-30 | 114 |
| Msa0238100 | AT1G22490.2 | 38.554 | 166 | 99 | 2 | 1 | 166 | 115 | 277 | 1.84e-30 | 114 |
| Msa0238100 | AT5G53210.1 | 74.242 | 66 | 17 | 0 | 1 | 66 | 102 | 167 | 1.84e-30 | 114 |
| Msa0238100 | AT5G53210.1 | 56.180 | 89 | 39 | 0 | 98 | 186 | 276 | 364 | 1.43e-27 | 107 |
| Msa0238100 | AT3G61950.6 | 42.857 | 154 | 75 | 4 | 1 | 153 | 127 | 268 | 1.09e-29 | 111 |
| Msa0238100 | AT3G61950.3 | 42.857 | 154 | 75 | 4 | 1 | 153 | 178 | 319 | 4.70e-29 | 110 |
| Msa0238100 | AT5G65320.1 | 35.632 | 174 | 111 | 1 | 1 | 173 | 102 | 275 | 1.59e-26 | 103 |
| Msa0238100 | AT5G46690.1 | 34.529 | 223 | 112 | 6 | 1 | 190 | 88 | 309 | 5.55e-25 | 99.8 |
| Msa0238100 | AT5G65320.2 | 34.731 | 167 | 108 | 1 | 1 | 166 | 102 | 268 | 3.06e-23 | 94.0 |
| Msa0238100 | AT5G46690.2 | 33.846 | 195 | 94 | 4 | 1 | 166 | 88 | 276 | 3.62e-21 | 88.6 |
Find 38 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCCTTGTTTCTATATTAAA+AGG | 0.106112 | 2_2:-11415895 | Msa0238100:CDS |
| TTAAACTCTTCCTTCTCTTT+TGG | 0.165473 | 2_2:+11415389 | None:intergenic |
| GGAGACCAAGCATCAATAAT+AGG | 0.279505 | 2_2:-11415466 | Msa0238100:CDS |
| GATATCTCTTCCGGAGGAAT+TGG | 0.293033 | 2_2:-11415313 | Msa0238100:CDS |
| CATCAATTTGATATCTCTTC+CGG | 0.303543 | 2_2:-11415322 | Msa0238100:CDS |
| GATGTAGAAGTGAAAATTTC+GGG | 0.305312 | 2_2:-11415238 | Msa0238100:CDS |
| ACCACTTTCAAAATCACATT+TGG | 0.314166 | 2_2:+11415214 | None:intergenic |
| TTTGGACTCGGACCTGGGCT+AGG | 0.337861 | 2_2:+11415364 | None:intergenic |
| AGATGTAGAAGTGAAAATTT+CGG | 0.352906 | 2_2:-11415239 | Msa0238100:CDS |
| GAGACCAAGCATCAATAATA+GGG | 0.364080 | 2_2:-11415465 | Msa0238100:CDS |
| GCTGGGATGTCAACTAAGTT+TGG | 0.372864 | 2_2:-11413671 | Msa0238100:CDS |
| TGGGACTAATAATGCTTTCA+AGG | 0.394040 | 2_2:-11415293 | Msa0238100:CDS |
| GTGGTTTCTCAAAGAATTCC+AGG | 0.394990 | 2_2:-11415196 | Msa0238100:CDS |
| ATATCTCTTCCGGAGGAATT+GGG | 0.423703 | 2_2:-11415312 | Msa0238100:CDS |
| ACATAGCTGTTGAGAGGAAC+AGG | 0.425460 | 2_2:-11415961 | Msa0238100:CDS |
| GAATTCCAGGTCAAGTTTCA+AGG | 0.446514 | 2_2:-11415183 | Msa0238100:CDS |
| CCCTTGTTTCTATATTAAAA+GGG | 0.462565 | 2_2:-11415894 | Msa0238100:intron |
| GACCGTTCTATACCAATTTG+TGG | 0.465718 | 2_2:-11415095 | Msa0238100:CDS |
| ATTCTAAAGCTTGAAGAACT+TGG | 0.481599 | 2_2:+11415413 | None:intergenic |
| TTTGTTACTACAGATAGAGC+TGG | 0.503412 | 2_2:-11413689 | Msa0238100:intron |
| TTGGACTCGGACCTGGGCTA+GGG | 0.504016 | 2_2:+11415365 | None:intergenic |
| AAGTTTGGAGGAACTAGCTA+TGG | 0.513586 | 2_2:-11413656 | Msa0238100:CDS |
| TCTATACCAATTTGTGGTCA+AGG | 0.525881 | 2_2:-11415089 | Msa0238100:intron |
| ATTATTAGTCCCAATTCCTC+CGG | 0.537700 | 2_2:+11415303 | None:intergenic |
| TCATCTTAACATCAGTAGCA+TGG | 0.547962 | 2_2:-11415122 | Msa0238100:CDS |
| ATAATCCTTGAAACTTGACC+TGG | 0.556421 | 2_2:+11415178 | None:intergenic |
| AATAATGCTTTCAAGGAGCT+AGG | 0.570674 | 2_2:-11415286 | Msa0238100:CDS |
| AAGAGTTTAAGCCCTAGCCC+AGG | 0.572825 | 2_2:-11415376 | Msa0238100:CDS |
| GGGATGTCAACTAAGTTTGG+AGG | 0.579553 | 2_2:-11413668 | Msa0238100:CDS |
| TTGTTACTACAGATAGAGCT+GGG | 0.580558 | 2_2:-11413688 | Msa0238100:intron |
| ACAGATGAATGAACATCTCA+AGG | 0.583323 | 2_2:-11415933 | Msa0238100:CDS |
| CTTTAGAATCCCAAAAGAGA+AGG | 0.588008 | 2_2:-11415399 | Msa0238100:CDS |
| ATATCAAATTGATGAAGTGT+TGG | 0.611378 | 2_2:+11415331 | None:intergenic |
| CAATTTGATATCTCTTCCGG+AGG | 0.615221 | 2_2:-11415319 | Msa0238100:CDS |
| AGACCAAGCATCAATAATAG+GGG | 0.616273 | 2_2:-11415464 | Msa0238100:CDS |
| GACCACAAATTGGTATAGAA+CGG | 0.617195 | 2_2:+11415093 | None:intergenic |
| TGTCTCACATAGCTGTTGAG+AGG | 0.643820 | 2_2:-11415967 | Msa0238100:CDS |
| GACCAAGCATCAATAATAGG+GGG | 0.668211 | 2_2:-11415463 | Msa0238100:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTATTTTTTTATTTTA+GGG | - | chr2_2:11414017-11414036 | Msa0238100:intron | 0.0% |
| !! | GTAAAAAAATAAAAGTAAAA+GGG | + | chr2_2:11414860-11414879 | None:intergenic | 10.0% |
| !! | TGTAAAAAAATAAAAGTAAA+AGG | + | chr2_2:11414861-11414880 | None:intergenic | 10.0% |
| !!! | TACAACAATTTTAAATATTT+GGG | + | chr2_2:11415121-11415140 | None:intergenic | 10.0% |
| !!! | ATACAACAATTTTAAATATT+TGG | + | chr2_2:11415122-11415141 | None:intergenic | 10.0% |
| !!! | TTTTTTTAGAACTAAATAAA+AGG | + | chr2_2:11415722-11415741 | None:intergenic | 10.0% |
| !! | TACAAGAAAATGTTAAATTA+CGG | + | chr2_2:11413770-11413789 | None:intergenic | 15.0% |
| !! | AGACAATTTATAATATGATT+TGG | + | chr2_2:11413902-11413921 | None:intergenic | 15.0% |
| !! | ATAAATTAATTAATCACTGA+AGG | - | chr2_2:11414795-11414814 | Msa0238100:intron | 15.0% |
| !!! | TTTGATATTTGATTTTTAAG+TGG | + | chr2_2:11415208-11415227 | None:intergenic | 15.0% |
| !! | CTATTTCAATACATTAAATA+TGG | + | chr2_2:11415420-11415439 | None:intergenic | 15.0% |
| !! | TTAATGTATTGAAATAGTAA+TGG | - | chr2_2:11415423-11415442 | Msa0238100:CDS | 15.0% |
| !! | AGTAGTATACTATTAATTAT+AGG | + | chr2_2:11415627-11415646 | None:intergenic | 15.0% |
| !! | AATAAAAGGCAAAAATATAA+TGG | + | chr2_2:11415708-11415727 | None:intergenic | 15.0% |
| !! | TCAATAGTGAAATAAAGATA+GGG | + | chr2_2:11413656-11413675 | None:intergenic | 20.0% |
| !! | TTCAATAGTGAAATAAAGAT+AGG | + | chr2_2:11413657-11413676 | None:intergenic | 20.0% |
| !! | ACAAGAAAATGTTAAATTAC+GGG | + | chr2_2:11413769-11413788 | None:intergenic | 20.0% |
| !! | AATACATGAACAAATGATTA+AGG | - | chr2_2:11414542-11414561 | Msa0238100:intron | 20.0% |
| !! | TGTATTTGATTCATCAAATT+GGG | + | chr2_2:11414653-11414672 | None:intergenic | 20.0% |
| !! | TTGTATTTGATTCATCAAAT+TGG | + | chr2_2:11414654-11414673 | None:intergenic | 20.0% |
| !! | TACATTAAAGTGCAATTAAA+AGG | - | chr2_2:11414751-11414770 | Msa0238100:intron | 20.0% |
| !!! | AACAATTTTAAATATTTGGG+AGG | + | chr2_2:11415118-11415137 | None:intergenic | 20.0% |
| !! | AAATCAAATATCAAACTCTT+CGG | - | chr2_2:11415213-11415232 | Msa0238100:CDS | 20.0% |
| !! | TAATGTAATCCAATCTTTAA+CGG | - | chr2_2:11415349-11415368 | Msa0238100:CDS | 20.0% |
| !! | TTAATTAATCCGTTAAAGAT+TGG | + | chr2_2:11415361-11415380 | None:intergenic | 20.0% |
| !! | TTATATAAAGTAACCATGTA+CGG | - | chr2_2:11415491-11415510 | Msa0238100:intron | 20.0% |
| !! | CAAATTATGGAAAAAAAAGA+GGG | + | chr2_2:11415799-11415818 | None:intergenic | 20.0% |
| !! | ACAAATTATGGAAAAAAAAG+AGG | + | chr2_2:11415800-11415819 | None:intergenic | 20.0% |
| !! | CCTTTTAATATAGAAACAAG+GGG | + | chr2_2:11413612-11413631 | None:intergenic | 25.0% |
| !! | CCCTTTTAATATAGAAACAA+GGG | + | chr2_2:11413613-11413632 | None:intergenic | 25.0% |
| !!! | CCCTTGTTTCTATATTAAAA+GGG | - | chr2_2:11413610-11413629 | Msa0238100:CDS | 25.0% |
| !! | ACCCTTTTAATATAGAAACA+AGG | + | chr2_2:11413614-11413633 | None:intergenic | 25.0% |
| ! | TTAGCAATGAAATTAAAGAG+TGG | + | chr2_2:11413702-11413721 | None:intergenic | 25.0% |
| !!! | TTTTTGTAATTTGTGTGTGA+TGG | - | chr2_2:11413969-11413988 | Msa0238100:intron | 25.0% |
| ! | ATATCAAATTGATGAAGTGT+TGG | + | chr2_2:11414176-11414195 | None:intergenic | 25.0% |
| ! | AGATGTAGAAGTGAAAATTT+CGG | - | chr2_2:11414265-11414284 | Msa0238100:intron | 25.0% |
| !! | ACGTCAACTTTATTTAACTT+GGG | - | chr2_2:11414506-11414525 | Msa0238100:intron | 25.0% |
| !! | TCTAAGCAACTGAAATTTTT+AGG | - | chr2_2:11414606-11414625 | Msa0238100:intron | 25.0% |
| !!! | ATTTTTAGGCTTGTTCAATT+AGG | - | chr2_2:11414620-11414639 | Msa0238100:intron | 25.0% |
| !!! | TTTTTAGGCTTGTTCAATTA+GGG | - | chr2_2:11414621-11414640 | Msa0238100:intron | 25.0% |
| ! | TAATGTAGCAGCTATAAATA+TGG | + | chr2_2:11414738-11414757 | None:intergenic | 25.0% |
| !!! | GTTTGTATTTTGAATGGTTT+TGG | + | chr2_2:11415011-11415030 | None:intergenic | 25.0% |
| !!! | CCATATGTTTGTATTTTGAA+TGG | + | chr2_2:11415017-11415036 | None:intergenic | 25.0% |
| ! | CCATTCAAAATACAAACATA+TGG | - | chr2_2:11415014-11415033 | Msa0238100:intron | 25.0% |
| ! | AATCCACCTAAAAATTACTT+CGG | - | chr2_2:11415175-11415194 | Msa0238100:CDS | 25.0% |
| !! | TTGAAACCGAAGTAATTTTT+AGG | + | chr2_2:11415184-11415203 | None:intergenic | 25.0% |
| !! | GAACACTATTGGTATTTTAT+AGG | + | chr2_2:11415250-11415269 | None:intergenic | 25.0% |
| !! | ATGGTTACTTTATATAACTG+CGG | + | chr2_2:11415488-11415507 | None:intergenic | 25.0% |
| ! | TATAGTTAGATAAACATGCA+TGG | + | chr2_2:11415651-11415670 | None:intergenic | 25.0% |
| ! | GCATGTTTATCTAACTATAT+TGG | - | chr2_2:11415652-11415671 | Msa0238100:intron | 25.0% |
| ! | CTATCTGTAGTAACAAATTA+TGG | + | chr2_2:11415812-11415831 | None:intergenic | 25.0% |
| ! | ATGAACATCTCAAGGTTTTA+AGG | - | chr2_2:11413579-11413598 | Msa0238100:three_prime_UTR | 30.0% |
| !! | CCCCTTGTTTCTATATTAAA+AGG | - | chr2_2:11413609-11413628 | Msa0238100:CDS | 30.0% |
| TTGTCTCTAAATATATGACG+AGG | - | chr2_2:11413916-11413935 | Msa0238100:intron | 30.0% | |
| !! | ATTCTAAAGCTTGAAGAACT+TGG | + | chr2_2:11414094-11414113 | None:intergenic | 30.0% |
| ! | TAAACTCTTCCTTCTCTTTT+GGG | + | chr2_2:11414117-11414136 | None:intergenic | 30.0% |
| ! | TTAAACTCTTCCTTCTCTTT+TGG | + | chr2_2:11414118-11414137 | None:intergenic | 30.0% |
| CATCAATTTGATATCTCTTC+CGG | - | chr2_2:11414182-11414201 | Msa0238100:intron | 30.0% | |
| GATGTAGAAGTGAAAATTTC+GGG | - | chr2_2:11414266-11414285 | Msa0238100:intron | 30.0% | |
| !! | TCCAAATGTGATTTTGAAAG+TGG | - | chr2_2:11414289-11414308 | Msa0238100:intron | 30.0% |
| ACCACTTTCAAAATCACATT+TGG | + | chr2_2:11414293-11414312 | None:intergenic | 30.0% | |
| ! | CACGTCAACTTTATTTAACT+TGG | - | chr2_2:11414505-11414524 | Msa0238100:intron | 30.0% |
| !! | ACTTTTGCTATGAAATGGTA+GGG | - | chr2_2:11414681-11414700 | Msa0238100:intron | 30.0% |
| ! | AAAAGTAAAAGGGTGTAGAA+TGG | + | chr2_2:11414850-11414869 | None:intergenic | 30.0% |
| ! | GGAGTTTCATTTTGTTAGTA+GGG | + | chr2_2:11414957-11414976 | None:intergenic | 30.0% |
| ! | AGGAGTTTCATTTTGTTAGT+AGG | + | chr2_2:11414958-11414977 | None:intergenic | 30.0% |
| CAAAATGAAACTCCTAGATT+AGG | - | chr2_2:11414963-11414982 | Msa0238100:intron | 30.0% | |
| CTCAAAGACTAAGGATATAA+AGG | + | chr2_2:11415077-11415096 | None:intergenic | 30.0% | |
| ! | CTTTATATCCTTAGTCTTTG+AGG | - | chr2_2:11415075-11415094 | Msa0238100:intron | 30.0% |
| ! | TATTTTCTCCTCAAAGACTA+AGG | + | chr2_2:11415086-11415105 | None:intergenic | 30.0% |
| TTGAGGAGAAAATAATCTCA+TGG | - | chr2_2:11415092-11415111 | Msa0238100:CDS | 30.0% | |
| AAATTAGTGTTTGTCCTTTC+CGG | - | chr2_2:11415145-11415164 | Msa0238100:CDS | 30.0% | |
| ! | TTTAGGTGGATTCAAAATAC+CGG | + | chr2_2:11415167-11415186 | None:intergenic | 30.0% |
| !! | AAACCGAAGTAATTTTTAGG+TGG | + | chr2_2:11415181-11415200 | None:intergenic | 30.0% |
| GATTGGATTACATTAGTAAG+AGG | + | chr2_2:11415344-11415363 | None:intergenic | 30.0% | |
| ACAGATGAATGAACATCTCA+AGG | - | chr2_2:11413571-11413590 | Msa0238100:three_prime_UTR | 35.0% | |
| GTGAAATAAAGATAGGGATG+TGG | + | chr2_2:11413650-11413669 | None:intergenic | 35.0% | |
| !! | GTAATTTGTGTGTGATGGAT+TGG | - | chr2_2:11413974-11413993 | Msa0238100:intron | 35.0% |
| GAGACCAAGCATCAATAATA+GGG | - | chr2_2:11414039-11414058 | Msa0238100:intron | 35.0% | |
| AGACCAAGCATCAATAATAG+GGG | - | chr2_2:11414040-11414059 | Msa0238100:intron | 35.0% | |
| !! | CTTTAGAATCCCAAAAGAGA+AGG | - | chr2_2:11414105-11414124 | Msa0238100:intron | 35.0% |
| ATTATTAGTCCCAATTCCTC+CGG | + | chr2_2:11414204-11414223 | None:intergenic | 35.0% | |
| TGGGACTAATAATGCTTTCA+AGG | - | chr2_2:11414211-11414230 | Msa0238100:intron | 35.0% | |
| AATAATGCTTTCAAGGAGCT+AGG | - | chr2_2:11414218-11414237 | Msa0238100:intron | 35.0% | |
| ATAATCCTTGAAACTTGACC+TGG | + | chr2_2:11414329-11414348 | None:intergenic | 35.0% | |
| TCATCTTAACATCAGTAGCA+TGG | - | chr2_2:11414382-11414401 | Msa0238100:intron | 35.0% | |
| GACCACAAATTGGTATAGAA+CGG | + | chr2_2:11414414-11414433 | None:intergenic | 35.0% | |
| TCTATACCAATTTGTGGTCA+AGG | - | chr2_2:11414415-11414434 | Msa0238100:intron | 35.0% | |
| ! | GTTTTACCTTGACCACAAAT+TGG | + | chr2_2:11414424-11414443 | None:intergenic | 35.0% |
| !!! | ACGTCACTTTTGCTATGAAA+TGG | - | chr2_2:11414676-11414695 | Msa0238100:intron | 35.0% |
| !! | CACTTTTGCTATGAAATGGT+AGG | - | chr2_2:11414680-11414699 | Msa0238100:intron | 35.0% |
| ! | TTTTAATCTTGCCTGCTTGT+GGG | + | chr2_2:11414928-11414947 | None:intergenic | 35.0% |
| CTTGGCTTAATTCCTAATCT+AGG | + | chr2_2:11414978-11414997 | None:intergenic | 35.0% | |
| CTAGATTAGGAATTAAGCCA+AGG | - | chr2_2:11414976-11414995 | Msa0238100:intron | 35.0% | |
| CCTACCTTGCTAGAAAAATA+GGG | + | chr2_2:11415042-11415061 | None:intergenic | 35.0% | |
| TCCTACCTTGCTAGAAAAAT+AGG | + | chr2_2:11415043-11415062 | None:intergenic | 35.0% | |
| GGAAAGGACAAACACTAATT+TGG | + | chr2_2:11415146-11415165 | None:intergenic | 35.0% | |
| ! | AGTAAGAGGTGTAGATAGAA+GGG | + | chr2_2:11415330-11415349 | None:intergenic | 35.0% |
| ! | TAGTAAGAGGTGTAGATAGA+AGG | + | chr2_2:11415331-11415350 | None:intergenic | 35.0% |
| GAAATAGTAATGGTGCTTTG+TGG | - | chr2_2:11415433-11415452 | Msa0238100:CDS | 35.0% | |
| AAAGTAACCATGTACGGTTT+CGG | - | chr2_2:11415497-11415516 | Msa0238100:intron | 35.0% | |
| GTATGTAAGAACCATGCAAA+AGG | + | chr2_2:11415765-11415784 | None:intergenic | 35.0% | |
| TTTGTTACTACAGATAGAGC+TGG | - | chr2_2:11415815-11415834 | Msa0238100:intron | 35.0% | |
| TTGTTACTACAGATAGAGCT+GGG | - | chr2_2:11415816-11415835 | Msa0238100:intron | 35.0% | |
| ! | ACAACAAAGCTTTTGTTCAG+AGG | - | chr2_2:11415875-11415894 | Msa0238100:intron | 35.0% |
| GGAGACCAAGCATCAATAAT+AGG | - | chr2_2:11414038-11414057 | Msa0238100:intron | 40.0% | |
| GACCAAGCATCAATAATAGG+GGG | - | chr2_2:11414041-11414060 | Msa0238100:intron | 40.0% | |
| CAATTTGATATCTCTTCCGG+AGG | - | chr2_2:11414185-11414204 | Msa0238100:intron | 40.0% | |
| ATATCTCTTCCGGAGGAATT+GGG | - | chr2_2:11414192-11414211 | Msa0238100:intron | 40.0% | |
| GTGGTTTCTCAAAGAATTCC+AGG | - | chr2_2:11414308-11414327 | Msa0238100:intron | 40.0% | |
| GAATTCCAGGTCAAGTTTCA+AGG | - | chr2_2:11414321-11414340 | Msa0238100:intron | 40.0% | |
| GACCGTTCTATACCAATTTG+TGG | - | chr2_2:11414409-11414428 | Msa0238100:intron | 40.0% | |
| ! | AGGCTTGTTCAATTAGGGTT+TGG | - | chr2_2:11414626-11414645 | Msa0238100:intron | 40.0% |
| !! | TGAAGGTAACTTGCTCTTCT+TGG | - | chr2_2:11414812-11414831 | Msa0238100:intron | 40.0% |
| ! | AAAGTACTTAACCCACAAGC+AGG | - | chr2_2:11414914-11414933 | Msa0238100:intron | 40.0% |
| ! | CTTTTAATCTTGCCTGCTTG+TGG | + | chr2_2:11414929-11414948 | None:intergenic | 40.0% |
| TAGGAATTAAGCCAAGGAAG+AGG | - | chr2_2:11414982-11415001 | Msa0238100:intron | 40.0% | |
| AGGAATTAAGCCAAGGAAGA+GGG | - | chr2_2:11414983-11415002 | Msa0238100:intron | 40.0% | |
| !! | CCCTATTTTTCTAGCAAGGT+AGG | - | chr2_2:11415039-11415058 | Msa0238100:intron | 40.0% |
| GTGGATTCAAAATACCGGAA+AGG | + | chr2_2:11415162-11415181 | None:intergenic | 40.0% | |
| ! | GTAAGAGGTGTAGATAGAAG+GGG | + | chr2_2:11415329-11415348 | None:intergenic | 40.0% |
| ATAACTGCGGAGTTTCATGT+TGG | + | chr2_2:11415475-11415494 | None:intergenic | 40.0% | |
| AAGCTTTACGTGTGGATTCA+CGG | + | chr2_2:11415532-11415551 | None:intergenic | 40.0% | |
| AAGTTTGGAGGAACTAGCTA+TGG | - | chr2_2:11415848-11415867 | Msa0238100:intron | 40.0% | |
| TGTCTCACATAGCTGTTGAG+AGG | - | chr2_2:11413537-11413556 | Msa0238100:three_prime_UTR | 45.0% | |
| ACATAGCTGTTGAGAGGAAC+AGG | - | chr2_2:11413543-11413562 | Msa0238100:three_prime_UTR | 45.0% | |
| CTCCCCCTATTATTGATGCT+TGG | + | chr2_2:11414046-11414065 | None:intergenic | 45.0% | |
| !!! | AGTGTTGGCTGCAGTGTTTT+TGG | + | chr2_2:11414161-11414180 | None:intergenic | 45.0% |
| GATATCTCTTCCGGAGGAAT+TGG | - | chr2_2:11414191-11414210 | Msa0238100:intron | 45.0% | |
| !! | GGCACCCTATTTTTCTAGCA+AGG | - | chr2_2:11415035-11415054 | Msa0238100:intron | 45.0% |
| TGGTTGAGGTGGAACACTAT+TGG | + | chr2_2:11415261-11415280 | None:intergenic | 45.0% | |
| !! | AATGGATTGTGTGTGGTGTC+CGG | + | chr2_2:11415287-11415306 | None:intergenic | 45.0% |
| !! | ATTAGGTTGGAGGGAGAGAA+TGG | + | chr2_2:11415305-11415324 | None:intergenic | 45.0% |
| !! | AGATAGAAGGGGCATTAGGT+TGG | + | chr2_2:11415318-11415337 | None:intergenic | 45.0% |
| !! | GTGTAGATAGAAGGGGCATT+AGG | + | chr2_2:11415322-11415341 | None:intergenic | 45.0% |
| AAGGAAACCGAAACCGTACA+TGG | + | chr2_2:11415507-11415526 | None:intergenic | 45.0% | |
| AGCTTTACGTGTGGATTCAC+GGG | + | chr2_2:11415531-11415550 | None:intergenic | 45.0% | |
| GCATGTTGAAGCTTTACGTG+TGG | + | chr2_2:11415540-11415559 | None:intergenic | 45.0% | |
| ! | TGCAAGATGTGCCTTTTGCA+TGG | - | chr2_2:11415751-11415770 | Msa0238100:intron | 45.0% |
| GCTGGGATGTCAACTAAGTT+TGG | - | chr2_2:11415833-11415852 | Msa0238100:intron | 45.0% | |
| GGGATGTCAACTAAGTTTGG+AGG | - | chr2_2:11415836-11415855 | Msa0238100:intron | 45.0% | |
| !!! | CTAATTTATTTTTTTATTTT+AGG | - | chr2_2:11414016-11414035 | Msa0238100:intron | 5.0% |
| AAGAGTTTAAGCCCTAGCCC+AGG | - | chr2_2:11414128-11414147 | Msa0238100:intron | 50.0% | |
| !!! | GTGTTTTTGGACTCGGACCT+GGG | + | chr2_2:11414148-11414167 | None:intergenic | 50.0% |
| !!! | AGTGTTTTTGGACTCGGACC+TGG | + | chr2_2:11414149-11414168 | None:intergenic | 50.0% |
| !!! | GGCTGCAGTGTTTTTGGACT+CGG | + | chr2_2:11414155-11414174 | None:intergenic | 50.0% |
| !!! | GGTTTTGGAACCCTCTTCCT+TGG | + | chr2_2:11414996-11415015 | None:intergenic | 50.0% |
| TGTTCCACCTCAACCATTCC+CGG | - | chr2_2:11415265-11415284 | Msa0238100:CDS | 50.0% | |
| ! | ATGGATTGTGTGTGGTGTCC+GGG | + | chr2_2:11415286-11415305 | None:intergenic | 50.0% |
| !! | GGGAGAGAATGGATTGTGTG+TGG | + | chr2_2:11415294-11415313 | None:intergenic | 50.0% |
| !! | AGAAGGGGCATTAGGTTGGA+GGG | + | chr2_2:11415314-11415333 | None:intergenic | 50.0% |
| !! | TAGAAGGGGCATTAGGTTGG+AGG | + | chr2_2:11415315-11415334 | None:intergenic | 50.0% |
| GCTTTACGTGTGGATTCACG+GGG | + | chr2_2:11415530-11415549 | None:intergenic | 50.0% | |
| TTGTGTGTGGTGTCCGGGAA+TGG | + | chr2_2:11415281-11415300 | None:intergenic | 55.0% | |
| TACGTGTGGATTCACGGGGA+AGG | + | chr2_2:11415526-11415545 | None:intergenic | 55.0% | |
| TTGGACTCGGACCTGGGCTA+GGG | + | chr2_2:11414142-11414161 | None:intergenic | 60.0% | |
| TTTGGACTCGGACCTGGGCT+AGG | + | chr2_2:11414143-11414162 | None:intergenic | 60.0% | |
| GTGTCCGGGAATGGTTGAGG+TGG | + | chr2_2:11415272-11415291 | None:intergenic | 60.0% | |
| GTGGTGTCCGGGAATGGTTG+AGG | + | chr2_2:11415275-11415294 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 11413536 | 11415990 | 11413536 | ID=Msa0238100;Name=Msa0238100 |
| chr2_2 | mRNA | 11413536 | 11415990 | 11413536 | ID=Msa0238100-mRNA-1;Parent=Msa0238100;Name=Msa0238100-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0.5|0.33|1|0.5|0.66|3|70|195 |
| chr2_2 | exon | 11413536 | 11413698 | 11413536 | ID=Msa0238100-mRNA-1:exon:4952;Parent=Msa0238100-mRNA-1 |
| chr2_2 | exon | 11415090 | 11415488 | 11415090 | ID=Msa0238100-mRNA-1:exon:4951;Parent=Msa0238100-mRNA-1 |
| chr2_2 | exon | 11415895 | 11415990 | 11415895 | ID=Msa0238100-mRNA-1:exon:4950;Parent=Msa0238100-mRNA-1 |
| chr2_2 | CDS | 11415895 | 11415990 | 11415895 | ID=Msa0238100-mRNA-1:cds;Parent=Msa0238100-mRNA-1 |
| chr2_2 | CDS | 11415090 | 11415488 | 11415090 | ID=Msa0238100-mRNA-1:cds;Parent=Msa0238100-mRNA-1 |
| chr2_2 | CDS | 11413606 | 11413698 | 11413606 | ID=Msa0238100-mRNA-1:cds;Parent=Msa0238100-mRNA-1 |
| chr2_2 | three_prime_UTR | 11413536 | 11413605 | 11413536 | ID=Msa0238100-mRNA-1:three_prime_utr;Parent=Msa0238100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
