Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0315990 | XP_013462737.1 | 92.308 | 195 | 3 | 1 | 1 | 183 | 1 | 195 | 2.99e-123 | 355 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0315990 | sp|Q9M8K6|MUTE_ARATH | 65.306 | 196 | 47 | 3 | 1 | 176 | 1 | 195 | 7.38e-78 | 233 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0315990 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0053110 | Msa0315990 | 0.802429 | 5.633477e-49 | -8.615850e-47 |
| Msa0098440 | Msa0315990 | 0.808201 | 3.480006e-50 | -8.615850e-47 |
| Msa0134130 | Msa0315990 | 0.808698 | 2.726039e-50 | -8.615850e-47 |
| Msa0196270 | Msa0315990 | 0.831781 | 1.374430e-55 | -8.615850e-47 |
| Msa0219190 | Msa0315990 | 0.816402 | 5.633888e-52 | -8.615850e-47 |
| Msa0238100 | Msa0315990 | 0.827313 | 1.676076e-54 | -8.615850e-47 |
| Msa0275520 | Msa0315990 | 0.910849 | 1.181001e-82 | -8.615850e-47 |
| Msa0298240 | Msa0315990 | 0.807800 | 4.234355e-50 | -8.615850e-47 |
| Msa0315990 | Msa0444010 | 0.809704 | 1.658866e-50 | -8.615850e-47 |
| Msa0315990 | Msa0678890 | 0.812982 | 3.222447e-51 | -8.615850e-47 |
| Msa0315990 | Msa0688500 | 0.812010 | 5.255400e-51 | -8.615850e-47 |
| Msa0315990 | Msa0707220 | 0.811777 | 5.906980e-51 | -8.615850e-47 |
| Msa0315990 | Msa0747780 | 0.805391 | 1.365473e-49 | -8.615850e-47 |
| Msa0315990 | Msa0867350 | 0.824630 | 7.274665e-54 | -8.615850e-47 |
| Msa0315990 | Msa0873190 | 0.808937 | 2.422502e-50 | -8.615850e-47 |
| Msa0315990 | Msa0885060 | 0.810088 | 1.371669e-50 | -8.615850e-47 |
| Msa0315990 | Msa0898730 | 0.814486 | 1.503423e-51 | -8.615850e-47 |
| Msa0315990 | Msa0922750 | 0.812291 | 4.565400e-51 | -8.615850e-47 |
| Msa0315990 | Msa0937550 | 0.800632 | 1.315764e-48 | -8.615850e-47 |
| Msa0315990 | Msa0975580 | 0.818115 | 2.319628e-52 | -8.615850e-47 |
| Msa0315990 | Msa0996270 | 0.800455 | 1.429943e-48 | -8.615850e-47 |
| Msa0315990 | Msa1007870 | 0.803446 | 3.472021e-49 | -8.615850e-47 |
| Msa0315990 | Msa1081570 | 0.803396 | 3.555952e-49 | -8.615850e-47 |
| Msa0315990 | Msa1127140 | 0.801121 | 1.045421e-48 | -8.615850e-47 |
| Msa0315990 | Msa1420060 | 0.838879 | 2.212277e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0315990 | MtrunA17_Chr2g0287761 | 92.308 | 195 | 3 | 1 | 1 | 183 | 1 | 195 | 2.75e-127 | 355 |
| Msa0315990 | MtrunA17_Chr1g0158941 | 44.762 | 210 | 75 | 2 | 1 | 173 | 87 | 292 | 2.31e-56 | 179 |
| Msa0315990 | MtrunA17_Chr0c01g0489461 | 45.596 | 193 | 83 | 3 | 1 | 171 | 195 | 387 | 1.32e-48 | 162 |
| Msa0315990 | MtrunA17_Chr3g0126381 | 42.500 | 200 | 60 | 5 | 30 | 174 | 1 | 200 | 6.77e-40 | 134 |
| Msa0315990 | MtrunA17_Chr3g0132471 | 39.267 | 191 | 93 | 4 | 1 | 169 | 116 | 305 | 2.09e-38 | 134 |
| Msa0315990 | MtrunA17_Chr7g0273081 | 40.107 | 187 | 95 | 4 | 1 | 171 | 116 | 301 | 1.46e-36 | 129 |
| Msa0315990 | MtrunA17_Chr1g0191571 | 39.583 | 192 | 95 | 4 | 1 | 172 | 136 | 326 | 3.18e-36 | 128 |
| Msa0315990 | MtrunA17_Chr8g0366551 | 38.728 | 173 | 93 | 2 | 1 | 160 | 124 | 296 | 3.37e-36 | 128 |
| Msa0315990 | MtrunA17_Chr5g0426851 | 36.170 | 188 | 103 | 3 | 1 | 171 | 100 | 287 | 8.15e-35 | 124 |
| Msa0315990 | MtrunA17_Chr8g0345871 | 46.067 | 178 | 91 | 3 | 1 | 173 | 181 | 358 | 9.05e-35 | 125 |
| Msa0315990 | MtrunA17_Chr8g0346161 | 29.268 | 164 | 96 | 3 | 1 | 154 | 290 | 443 | 7.04e-18 | 80.5 |
| Msa0315990 | MtrunA17_Chr7g0275821 | 26.946 | 167 | 109 | 3 | 1 | 165 | 251 | 406 | 7.95e-14 | 68.6 |
| Msa0315990 | MtrunA17_Chr3g0126361 | 81.250 | 32 | 6 | 0 | 1 | 32 | 101 | 132 | 3.25e-13 | 63.9 |
| Msa0315990 | MtrunA17_Chr8g0346151 | 26.061 | 165 | 99 | 4 | 1 | 152 | 278 | 432 | 6.84e-13 | 65.9 |
| Msa0315990 | MtrunA17_Chr8g0366751 | 24.599 | 187 | 103 | 5 | 1 | 164 | 461 | 632 | 2.97e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0315990 | AT3G06120.1 | 65.306 | 196 | 47 | 3 | 1 | 176 | 1 | 195 | 7.50e-79 | 233 |
| Msa0315990 | AT3G24140.2 | 44.444 | 198 | 86 | 2 | 1 | 174 | 197 | 394 | 7.53e-49 | 163 |
| Msa0315990 | AT3G24140.1 | 44.444 | 198 | 86 | 2 | 1 | 174 | 197 | 394 | 9.28e-49 | 163 |
| Msa0315990 | AT4G01460.1 | 40.741 | 189 | 93 | 3 | 1 | 173 | 115 | 300 | 3.34e-37 | 130 |
| Msa0315990 | AT4G01460.2 | 40.741 | 189 | 93 | 3 | 1 | 173 | 115 | 300 | 3.34e-37 | 130 |
| Msa0315990 | AT2G46810.2 | 44.134 | 179 | 96 | 3 | 1 | 175 | 121 | 299 | 3.97e-35 | 125 |
| Msa0315990 | AT1G72210.1 | 37.433 | 187 | 98 | 5 | 1 | 171 | 125 | 308 | 6.69e-35 | 125 |
| Msa0315990 | AT2G46810.3 | 44.134 | 179 | 96 | 3 | 1 | 175 | 181 | 359 | 1.25e-34 | 125 |
| Msa0315990 | AT2G46810.1 | 44.134 | 179 | 96 | 3 | 1 | 175 | 193 | 371 | 1.66e-34 | 125 |
| Msa0315990 | AT1G22490.1 | 36.813 | 182 | 105 | 2 | 1 | 172 | 115 | 296 | 2.39e-34 | 123 |
| Msa0315990 | AT2G46810.4 | 45.223 | 157 | 83 | 2 | 1 | 154 | 121 | 277 | 1.86e-31 | 116 |
| Msa0315990 | AT1G72210.2 | 36.686 | 169 | 89 | 4 | 1 | 154 | 125 | 290 | 1.03e-30 | 114 |
| Msa0315990 | AT5G53210.2 | 74.242 | 66 | 17 | 0 | 1 | 66 | 102 | 167 | 1.06e-30 | 114 |
| Msa0315990 | AT5G53210.2 | 51.515 | 66 | 32 | 0 | 89 | 154 | 279 | 344 | 6.18e-17 | 77.4 |
| Msa0315990 | AT1G22490.2 | 37.423 | 163 | 93 | 1 | 1 | 154 | 115 | 277 | 1.24e-30 | 114 |
| Msa0315990 | AT5G53210.1 | 74.242 | 66 | 17 | 0 | 1 | 66 | 102 | 167 | 1.37e-30 | 114 |
| Msa0315990 | AT5G53210.1 | 54.651 | 86 | 39 | 0 | 89 | 174 | 279 | 364 | 9.49e-27 | 104 |
| Msa0315990 | AT3G61950.2 | 39.779 | 181 | 96 | 4 | 1 | 173 | 127 | 302 | 1.01e-29 | 111 |
| Msa0315990 | AT3G61950.1 | 39.779 | 181 | 96 | 4 | 1 | 173 | 178 | 353 | 3.68e-29 | 110 |
| Msa0315990 | AT3G61950.6 | 43.046 | 151 | 67 | 3 | 1 | 141 | 127 | 268 | 2.78e-28 | 107 |
| Msa0315990 | AT3G61950.3 | 43.046 | 151 | 67 | 3 | 1 | 141 | 178 | 319 | 1.02e-27 | 106 |
| Msa0315990 | AT5G46690.1 | 35.135 | 222 | 100 | 6 | 1 | 178 | 88 | 309 | 5.42e-27 | 104 |
| Msa0315990 | AT5G65320.1 | 36.782 | 174 | 97 | 2 | 1 | 161 | 102 | 275 | 9.05e-26 | 100 |
| Msa0315990 | AT5G46690.2 | 35.979 | 189 | 86 | 4 | 1 | 154 | 88 | 276 | 2.69e-23 | 94.0 |
| Msa0315990 | AT5G65320.2 | 35.928 | 167 | 94 | 2 | 1 | 154 | 102 | 268 | 1.73e-22 | 91.7 |
| Msa0315990 | AT1G01260.1 | 30.909 | 165 | 88 | 4 | 1 | 165 | 432 | 570 | 5.44e-17 | 78.2 |
| Msa0315990 | AT1G01260.2 | 30.909 | 165 | 88 | 4 | 1 | 165 | 432 | 570 | 5.44e-17 | 78.2 |
| Msa0315990 | AT1G01260.3 | 30.909 | 165 | 88 | 4 | 1 | 165 | 432 | 570 | 5.44e-17 | 78.2 |
| Msa0315990 | AT5G46760.1 | 30.723 | 166 | 104 | 5 | 1 | 160 | 414 | 574 | 9.57e-14 | 68.9 |
| Msa0315990 | AT1G32640.1 | 26.901 | 171 | 91 | 4 | 1 | 154 | 451 | 604 | 4.35e-11 | 61.2 |
Find 32 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCCTTGTTTCTATATTAAA+AGG | 0.106112 | 2_4:-12740401 | Msa0315990:CDS |
| TTAAACTCTTCCTTCTCTTT+TGG | 0.165473 | 2_4:+12739897 | None:intergenic |
| GGAGACCAAGCATCAATAAT+AGG | 0.279505 | 2_4:-12739974 | Msa0315990:CDS |
| GATGTAGAAGTGAAAATTTC+GGG | 0.305312 | 2_4:-12739746 | Msa0315990:CDS |
| CATCAATTTGATATCTCTTC+CGG | 0.314307 | 2_4:-12739830 | Msa0315990:intron |
| TTTGGACTCGGACCTGGGCT+AGG | 0.337861 | 2_4:+12739872 | None:intergenic |
| AGATGTAGAAGTGAAAATTT+CGG | 0.352906 | 2_4:-12739747 | Msa0315990:CDS |
| GAGACCAAGCATCAATAATA+GGG | 0.364080 | 2_4:-12739973 | Msa0315990:CDS |
| GCTGGGATGTCAACTAAGTT+TGG | 0.372864 | 2_4:-12738169 | Msa0315990:CDS |
| GTGGTTTCTCAAAGAATTCC+AGG | 0.381915 | 2_4:-12739704 | Msa0315990:CDS |
| ACATAGCTGTTGAGAGGAAC+AGG | 0.425460 | 2_4:-12740467 | Msa0315990:CDS |
| ACCACTCTCAAAATCACGTT+TGG | 0.426156 | 2_4:+12739722 | None:intergenic |
| GAATTCCAGGTCAAGTTTCA+AGG | 0.446514 | 2_4:-12739691 | Msa0315990:CDS |
| CCCTTGTTTCTATATTAAAA+GGG | 0.462565 | 2_4:-12740400 | Msa0315990:intron |
| GACCGTTCTATACCAATTTG+TGG | 0.465718 | 2_4:-12739603 | Msa0315990:CDS |
| ATTCTAAAGCTTGAAGAACT+TGG | 0.481599 | 2_4:+12739921 | None:intergenic |
| TTTGTTACTACAGATAGAGC+TGG | 0.503412 | 2_4:-12738187 | Msa0315990:intron |
| TTGGACTCGGACCTGGGCTA+GGG | 0.504016 | 2_4:+12739873 | None:intergenic |
| AAGTTTGGAGGAACTAGCTA+TGG | 0.513586 | 2_4:-12738154 | Msa0315990:CDS |
| TCTATACCAATTTGTGGTCA+AGG | 0.525881 | 2_4:-12739597 | Msa0315990:intron |
| TCATCTTAACATCAGTAGCA+TGG | 0.547962 | 2_4:-12739630 | Msa0315990:CDS |
| ATAATCCTTGAAACTTGACC+TGG | 0.556421 | 2_4:+12739686 | None:intergenic |
| AAGAGTTTAAGCCCTAGCCC+AGG | 0.572825 | 2_4:-12739884 | Msa0315990:CDS |
| GGGATGTCAACTAAGTTTGG+AGG | 0.579553 | 2_4:-12738166 | Msa0315990:CDS |
| TTGTTACTACAGATAGAGCT+GGG | 0.580558 | 2_4:-12738186 | Msa0315990:intron |
| ACAGATGAATGAACATCTCA+AGG | 0.583323 | 2_4:-12740439 | Msa0315990:CDS |
| CTTTAGAATCCCAAAAGAGA+AGG | 0.588008 | 2_4:-12739907 | Msa0315990:CDS |
| ATATCAAATTGATGAAGTGT+TGG | 0.611378 | 2_4:+12739839 | None:intergenic |
| AGACCAAGCATCAATAATAG+GGG | 0.616273 | 2_4:-12739972 | Msa0315990:CDS |
| GACCACAAATTGGTATAGAA+CGG | 0.617195 | 2_4:+12739601 | None:intergenic |
| TGTCTCACATAGCTGTTGAG+AGG | 0.643820 | 2_4:-12740473 | Msa0315990:CDS |
| GACCAAGCATCAATAATAGG+GGG | 0.668211 | 2_4:-12739971 | Msa0315990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAAAAAAAATAAAAGTAAA+AGG | + | chr2_4:12739359-12739378 | None:intergenic | 10.0% |
| !!! | TACAACAATTTTAAATATTT+GGG | + | chr2_4:12739624-12739643 | None:intergenic | 10.0% |
| !!! | ATACAACAATTTTAAATATT+TGG | + | chr2_4:12739625-12739644 | None:intergenic | 10.0% |
| !! | TACAAGAAAATGTTAAATTA+CGG | + | chr2_4:12738284-12738303 | None:intergenic | 15.0% |
| !! | AGACAATTTATAATATGATT+TGG | + | chr2_4:12738416-12738435 | None:intergenic | 15.0% |
| !! | ATAAATTAATTAATCACTGA+AGG | - | chr2_4:12739293-12739312 | Msa0315990:intron | 15.0% |
| !!! | TTTGATATTTGATTTTTAAG+TGG | + | chr2_4:12739711-12739730 | None:intergenic | 15.0% |
| !! | CTATTTCAATACATTAAATA+TGG | + | chr2_4:12739923-12739942 | None:intergenic | 15.0% |
| !! | TTAATGTATTGAAATAGTAA+TGG | - | chr2_4:12739926-12739945 | Msa0315990:CDS | 15.0% |
| !! | AGTAGTATACTATTAATTAT+AGG | + | chr2_4:12740130-12740149 | None:intergenic | 15.0% |
| !!! | TATTTTTAGAACTAAATAGA+AGG | + | chr2_4:12740228-12740247 | None:intergenic | 15.0% |
| !! | TCAATAGTGAAATAAAGATA+GGG | + | chr2_4:12738154-12738173 | None:intergenic | 20.0% |
| !! | TTCAATAGTGAAATAAAGAT+AGG | + | chr2_4:12738155-12738174 | None:intergenic | 20.0% |
| !! | ACAAGAAAATGTTAAATTAC+GGG | + | chr2_4:12738283-12738302 | None:intergenic | 20.0% |
| !! | AATACATGAACAAATGATTA+AGG | - | chr2_4:12739040-12739059 | Msa0315990:intron | 20.0% |
| !! | TGTATTTGATTCATCAAATT+GGG | + | chr2_4:12739151-12739170 | None:intergenic | 20.0% |
| !! | TTGTATTTGATTCATCAAAT+TGG | + | chr2_4:12739152-12739171 | None:intergenic | 20.0% |
| !! | TACATTAAAGTGCAATTAAA+AGG | - | chr2_4:12739249-12739268 | Msa0315990:intron | 20.0% |
| !! | AAGACTAATTAAGGATATAA+AGG | + | chr2_4:12739576-12739595 | None:intergenic | 20.0% |
| !!! | AACAATTTTAAATATTTGGG+AGG | + | chr2_4:12739621-12739640 | None:intergenic | 20.0% |
| !! | AAATCAAATATCAAACTCTT+CGG | - | chr2_4:12739716-12739735 | Msa0315990:CDS | 20.0% |
| !! | TTAATTAATCCGTTAAAGAT+TGG | + | chr2_4:12739864-12739883 | None:intergenic | 20.0% |
| !! | TTATATAAAGTAACCATGTA+CGG | - | chr2_4:12739994-12740013 | Msa0315990:intron | 20.0% |
| !! | AATAGAAGGCAAAAATATAA+TGG | + | chr2_4:12740214-12740233 | None:intergenic | 20.0% |
| !! | CAAATTATGGAAAAAAAAGA+GGG | + | chr2_4:12740305-12740324 | None:intergenic | 20.0% |
| !! | ACAAATTATGGAAAAAAAAG+AGG | + | chr2_4:12740306-12740325 | None:intergenic | 20.0% |
| !! | CCTTTTAATATAGAAACAAG+GGG | + | chr2_4:12738110-12738129 | None:intergenic | 25.0% |
| !! | CCCTTTTAATATAGAAACAA+GGG | + | chr2_4:12738111-12738130 | None:intergenic | 25.0% |
| !!! | CCCTTGTTTCTATATTAAAA+GGG | - | chr2_4:12738108-12738127 | Msa0315990:CDS | 25.0% |
| !! | ACCCTTTTAATATAGAAACA+AGG | + | chr2_4:12738112-12738131 | None:intergenic | 25.0% |
| ! | TTAGCAATGAAATTAAAGAG+TGG | + | chr2_4:12738203-12738222 | None:intergenic | 25.0% |
| !!! | TTTTTGTAATTTGTGTGTGA+TGG | - | chr2_4:12738481-12738500 | Msa0315990:intron | 25.0% |
| ! | ATATCAAATTGATGAAGTGT+TGG | + | chr2_4:12738672-12738691 | None:intergenic | 25.0% |
| ! | AGATGTAGAAGTGAAAATTT+CGG | - | chr2_4:12738761-12738780 | Msa0315990:intron | 25.0% |
| !! | ACGTCAACTTTATTTAACTT+GGG | - | chr2_4:12739004-12739023 | Msa0315990:intron | 25.0% |
| !! | TCTAAGCAACTGAAATTTTT+AGG | - | chr2_4:12739104-12739123 | Msa0315990:intron | 25.0% |
| !!! | ATTTTTAGGCTTGTTCAATT+AGG | - | chr2_4:12739118-12739137 | Msa0315990:intron | 25.0% |
| !!! | TTTTTAGGCTTGTTCAATTA+GGG | - | chr2_4:12739119-12739138 | Msa0315990:intron | 25.0% |
| ! | TAATGTAGCAGCTATAAATA+TGG | + | chr2_4:12739236-12739255 | None:intergenic | 25.0% |
| !!! | GTTTGTATTTTGAATGGTTT+TGG | + | chr2_4:12739510-12739529 | None:intergenic | 25.0% |
| !!! | CCATATGTTTGTATTTTGAA+TGG | + | chr2_4:12739516-12739535 | None:intergenic | 25.0% |
| ! | CCATTCAAAATACAAACATA+TGG | - | chr2_4:12739513-12739532 | Msa0315990:intron | 25.0% |
| !!! | ATATCCTTAATTAGTCTTTG+AGG | - | chr2_4:12739578-12739597 | Msa0315990:intron | 25.0% |
| ! | AATCCACCTAAAAATTACTT+CGG | - | chr2_4:12739678-12739697 | Msa0315990:CDS | 25.0% |
| !! | TTGAAACCGAAGTAATTTTT+AGG | + | chr2_4:12739687-12739706 | None:intergenic | 25.0% |
| !! | GAACACTATTGGTATTTTAT+AGG | + | chr2_4:12739753-12739772 | None:intergenic | 25.0% |
| ! | TAATGCAATCCAATCTTTAA+CGG | - | chr2_4:12739852-12739871 | Msa0315990:CDS | 25.0% |
| !! | ATGGTTACTTTATATAACTG+CGG | + | chr2_4:12739991-12740010 | None:intergenic | 25.0% |
| ! | TATAGTTAGATAAACATGCA+TGG | + | chr2_4:12740157-12740176 | None:intergenic | 25.0% |
| ! | GCATGTTTATCTAACTATAT+TGG | - | chr2_4:12740158-12740177 | Msa0315990:intron | 25.0% |
| ! | CTATCTGTAGTAACAAATTA+TGG | + | chr2_4:12740318-12740337 | None:intergenic | 25.0% |
| ! | ATGAACATCTCAAGGTTTTA+AGG | - | chr2_4:12738077-12738096 | Msa0315990:three_prime_UTR | 30.0% |
| !! | CCCCTTGTTTCTATATTAAA+AGG | - | chr2_4:12738107-12738126 | Msa0315990:CDS | 30.0% |
| TTGTCTCTAAATATATGACG+AGG | - | chr2_4:12738430-12738449 | Msa0315990:intron | 30.0% | |
| !! | ATTCTAAAGCTTGAAGAACT+TGG | + | chr2_4:12738590-12738609 | None:intergenic | 30.0% |
| ! | TAAACTCTTCCTTCTCTTTT+GGG | + | chr2_4:12738613-12738632 | None:intergenic | 30.0% |
| ! | TTAAACTCTTCCTTCTCTTT+TGG | + | chr2_4:12738614-12738633 | None:intergenic | 30.0% |
| CATCAATTTGATATCTCTTC+CGG | - | chr2_4:12738678-12738697 | Msa0315990:intron | 30.0% | |
| AATAATGCTTTCAAGGAACT+AGG | - | chr2_4:12738714-12738733 | Msa0315990:intron | 30.0% | |
| GATGTAGAAGTGAAAATTTC+GGG | - | chr2_4:12738762-12738781 | Msa0315990:intron | 30.0% | |
| ! | CACGTCAACTTTATTTAACT+TGG | - | chr2_4:12739003-12739022 | Msa0315990:intron | 30.0% |
| !! | ACTTTTGCTATGAAATGGTA+GGG | - | chr2_4:12739179-12739198 | Msa0315990:intron | 30.0% |
| ! | AAAAGTAAAAGGGTGTAGAA+TGG | + | chr2_4:12739348-12739367 | None:intergenic | 30.0% |
| ! | TTTGGCTTAATTCCTAATCT+AGG | + | chr2_4:12739477-12739496 | None:intergenic | 30.0% |
| TTCTCCTCAAAGACTAATTA+AGG | + | chr2_4:12739585-12739604 | None:intergenic | 30.0% | |
| TTGAGGAGAAAATAATCTCA+TGG | - | chr2_4:12739595-12739614 | Msa0315990:intron | 30.0% | |
| AAATTAGTGTTTGTCCTTTC+CGG | - | chr2_4:12739648-12739667 | Msa0315990:CDS | 30.0% | |
| ! | TTTAGGTGGATTCAAAATAC+CGG | + | chr2_4:12739670-12739689 | None:intergenic | 30.0% |
| !! | AAACCGAAGTAATTTTTAGG+TGG | + | chr2_4:12739684-12739703 | None:intergenic | 30.0% |
| ACAGATGAATGAACATCTCA+AGG | - | chr2_4:12738069-12738088 | Msa0315990:three_prime_UTR | 35.0% | |
| !! | GTAATTTGTGTGTGATGGAT+TGG | - | chr2_4:12738486-12738505 | Msa0315990:intron | 35.0% |
| GAGACCAAGCATCAATAATA+GGG | - | chr2_4:12738535-12738554 | Msa0315990:intron | 35.0% | |
| AGACCAAGCATCAATAATAG+GGG | - | chr2_4:12738536-12738555 | Msa0315990:intron | 35.0% | |
| !! | CTTTAGAATCCCAAAAGAGA+AGG | - | chr2_4:12738601-12738620 | Msa0315990:intron | 35.0% |
| ATTATTAGTCCCAATTCCAC+CGG | + | chr2_4:12738700-12738719 | None:intergenic | 35.0% | |
| TGGGACTAATAATGCTTTCA+AGG | - | chr2_4:12738707-12738726 | Msa0315990:intron | 35.0% | |
| ATAATCCTTGAAACTTGACC+TGG | + | chr2_4:12738825-12738844 | None:intergenic | 35.0% | |
| TCATCTTAACATCAGTAGCA+TGG | - | chr2_4:12738878-12738897 | Msa0315990:intron | 35.0% | |
| GACCACAAATTGGTATAGAA+CGG | + | chr2_4:12738910-12738929 | None:intergenic | 35.0% | |
| TCTATACCAATTTGTGGTCA+AGG | - | chr2_4:12738911-12738930 | Msa0315990:intron | 35.0% | |
| ! | GTTTTACCTTGACCACAAAT+TGG | + | chr2_4:12738920-12738939 | None:intergenic | 35.0% |
| !!! | ACGTCACTTTTGCTATGAAA+TGG | - | chr2_4:12739174-12739193 | Msa0315990:intron | 35.0% |
| !! | CACTTTTGCTATGAAATGGT+AGG | - | chr2_4:12739178-12739197 | Msa0315990:intron | 35.0% |
| ! | TTTTAATCTTGCCTGCTTGT+GGG | + | chr2_4:12739427-12739446 | None:intergenic | 35.0% |
| ! | GGAGGTTCATTTTGTTAGTA+GGG | + | chr2_4:12739456-12739475 | None:intergenic | 35.0% |
| ! | AGGAGGTTCATTTTGTTAGT+AGG | + | chr2_4:12739457-12739476 | None:intergenic | 35.0% |
| CAAAATGAACCTCCTAGATT+AGG | - | chr2_4:12739462-12739481 | Msa0315990:intron | 35.0% | |
| TAGGAATTAAGCCAAAGAAG+AGG | - | chr2_4:12739481-12739500 | Msa0315990:intron | 35.0% | |
| AGGAATTAAGCCAAAGAAGA+GGG | - | chr2_4:12739482-12739501 | Msa0315990:intron | 35.0% | |
| CCTACCTTGCTAGAAAAATA+GGG | + | chr2_4:12739541-12739560 | None:intergenic | 35.0% | |
| TCCTACCTTGCTAGAAAAAT+AGG | + | chr2_4:12739542-12739561 | None:intergenic | 35.0% | |
| GGAAAGGACAAACACTAATT+TGG | + | chr2_4:12739649-12739668 | None:intergenic | 35.0% | |
| ! | AGTAAGAGGTGTAGATAGAA+GGG | + | chr2_4:12739833-12739852 | None:intergenic | 35.0% |
| ! | TAGTAAGAGGTGTAGATAGA+AGG | + | chr2_4:12739834-12739853 | None:intergenic | 35.0% |
| GATTGGATTGCATTAGTAAG+AGG | + | chr2_4:12739847-12739866 | None:intergenic | 35.0% | |
| GAAATAGTAATGGTGCTTTG+TGG | - | chr2_4:12739936-12739955 | Msa0315990:CDS | 35.0% | |
| AAAGTAACCATGTACGGTTT+CGG | - | chr2_4:12740000-12740019 | Msa0315990:intron | 35.0% | |
| AATCTTTACGTGTGGATTCA+CGG | + | chr2_4:12740035-12740054 | None:intergenic | 35.0% | |
| AGTTAGATAAACATGCATGG+TGG | + | chr2_4:12740154-12740173 | None:intergenic | 35.0% | |
| GTATGTAAGAACCATGCAAA+AGG | + | chr2_4:12740271-12740290 | None:intergenic | 35.0% | |
| TTTGTTACTACAGATAGAGC+TGG | - | chr2_4:12740321-12740340 | Msa0315990:intron | 35.0% | |
| TTGTTACTACAGATAGAGCT+GGG | - | chr2_4:12740322-12740341 | Msa0315990:intron | 35.0% | |
| ! | ACAACAAAGCTTTTGTTCAG+AGG | - | chr2_4:12740381-12740400 | Msa0315990:intron | 35.0% |
| GGAGACCAAGCATCAATAAT+AGG | - | chr2_4:12738534-12738553 | Msa0315990:intron | 40.0% | |
| GACCAAGCATCAATAATAGG+GGG | - | chr2_4:12738537-12738556 | Msa0315990:intron | 40.0% | |
| CAATTTGATATCTCTTCCGG+TGG | - | chr2_4:12738681-12738700 | Msa0315990:intron | 40.0% | |
| ATATCTCTTCCGGTGGAATT+GGG | - | chr2_4:12738688-12738707 | Msa0315990:intron | 40.0% | |
| !! | TCCAAACGTGATTTTGAGAG+TGG | - | chr2_4:12738785-12738804 | Msa0315990:intron | 40.0% |
| ACCACTCTCAAAATCACGTT+TGG | + | chr2_4:12738789-12738808 | None:intergenic | 40.0% | |
| GTGGTTTCTCAAAGAATTCC+AGG | - | chr2_4:12738804-12738823 | Msa0315990:intron | 40.0% | |
| GAATTCCAGGTCAAGTTTCA+AGG | - | chr2_4:12738817-12738836 | Msa0315990:intron | 40.0% | |
| GACCGTTCTATACCAATTTG+TGG | - | chr2_4:12738905-12738924 | Msa0315990:intron | 40.0% | |
| ! | AGGCTTGTTCAATTAGGGTT+TGG | - | chr2_4:12739124-12739143 | Msa0315990:intron | 40.0% |
| !! | TGAAGGTAACTTGCTCTTCT+TGG | - | chr2_4:12739310-12739329 | Msa0315990:intron | 40.0% |
| ! | AAAGTACTTAACCCACAAGC+AGG | - | chr2_4:12739413-12739432 | Msa0315990:intron | 40.0% |
| ! | CTTTTAATCTTGCCTGCTTG+TGG | + | chr2_4:12739428-12739447 | None:intergenic | 40.0% |
| GGCTTAATTCCTAATCTAGG+AGG | + | chr2_4:12739474-12739493 | None:intergenic | 40.0% | |
| !! | CCCTATTTTTCTAGCAAGGT+AGG | - | chr2_4:12739538-12739557 | Msa0315990:intron | 40.0% |
| GTGGATTCAAAATACCGGAA+AGG | + | chr2_4:12739665-12739684 | None:intergenic | 40.0% | |
| ! | GTAAGAGGTGTAGATAGAAG+GGG | + | chr2_4:12739832-12739851 | None:intergenic | 40.0% |
| ATAACTGCGGAGTTTCATGT+TGG | + | chr2_4:12739978-12739997 | None:intergenic | 40.0% | |
| ATCTTTACGTGTGGATTCAC+GGG | + | chr2_4:12740034-12740053 | None:intergenic | 40.0% | |
| GCATGTTGAATCTTTACGTG+TGG | + | chr2_4:12740043-12740062 | None:intergenic | 40.0% | |
| AAGTTTGGAGGAACTAGCTA+TGG | - | chr2_4:12740354-12740373 | Msa0315990:intron | 40.0% | |
| TGTCTCACATAGCTGTTGAG+AGG | - | chr2_4:12738035-12738054 | Msa0315990:three_prime_UTR | 45.0% | |
| ACATAGCTGTTGAGAGGAAC+AGG | - | chr2_4:12738041-12738060 | Msa0315990:three_prime_UTR | 45.0% | |
| CTCCCCCTATTATTGATGCT+TGG | + | chr2_4:12738542-12738561 | None:intergenic | 45.0% | |
| !!! | AGTGTTGGCTGCAGTGTTTT+TGG | + | chr2_4:12738657-12738676 | None:intergenic | 45.0% |
| GATATCTCTTCCGGTGGAAT+TGG | - | chr2_4:12738687-12738706 | Msa0315990:intron | 45.0% | |
| !!! | GGTTTTGGAACCCTCTTCTT+TGG | + | chr2_4:12739495-12739514 | None:intergenic | 45.0% |
| !! | GGCACCCTATTTTTCTAGCA+AGG | - | chr2_4:12739534-12739553 | Msa0315990:intron | 45.0% |
| TGGTTGAGGTGGAACACTAT+TGG | + | chr2_4:12739764-12739783 | None:intergenic | 45.0% | |
| !! | AATGGATTGTGTGTGGTGTC+CGG | + | chr2_4:12739790-12739809 | None:intergenic | 45.0% |
| !! | ATTAGGTTGGAGGGAGAGAA+TGG | + | chr2_4:12739808-12739827 | None:intergenic | 45.0% |
| !! | AGATAGAAGGGGCATTAGGT+TGG | + | chr2_4:12739821-12739840 | None:intergenic | 45.0% |
| !! | GTGTAGATAGAAGGGGCATT+AGG | + | chr2_4:12739825-12739844 | None:intergenic | 45.0% |
| AAGGAAACCGAAACCGTACA+TGG | + | chr2_4:12740010-12740029 | None:intergenic | 45.0% | |
| TCTTTACGTGTGGATTCACG+GGG | + | chr2_4:12740033-12740052 | None:intergenic | 45.0% | |
| ! | TGCAAGATGTGCCTTTTGCA+TGG | - | chr2_4:12740257-12740276 | Msa0315990:intron | 45.0% |
| GCTGGGATGTCAACTAAGTT+TGG | - | chr2_4:12740339-12740358 | Msa0315990:intron | 45.0% | |
| GGGATGTCAACTAAGTTTGG+AGG | - | chr2_4:12740342-12740361 | Msa0315990:intron | 45.0% | |
| !!! | TCAATTTATTTTTTTATTTT+AGG | - | chr2_4:12738512-12738531 | Msa0315990:intron | 5.0% |
| !!! | CAATTTATTTTTTTATTTTA+GGG | - | chr2_4:12738513-12738532 | Msa0315990:intron | 5.0% |
| !! | TAAAAAAAATAAAAGTAAAA+GGG | + | chr2_4:12739358-12739377 | None:intergenic | 5.0% |
| AAGAGTTTAAGCCCTAGCCC+AGG | - | chr2_4:12738624-12738643 | Msa0315990:intron | 50.0% | |
| !!! | GTGTTTTTGGACTCGGACCT+GGG | + | chr2_4:12738644-12738663 | None:intergenic | 50.0% |
| !!! | AGTGTTTTTGGACTCGGACC+TGG | + | chr2_4:12738645-12738664 | None:intergenic | 50.0% |
| !!! | GGCTGCAGTGTTTTTGGACT+CGG | + | chr2_4:12738651-12738670 | None:intergenic | 50.0% |
| TGTTCCACCTCAACCATTCC+CGG | - | chr2_4:12739768-12739787 | Msa0315990:CDS | 50.0% | |
| ! | ATGGATTGTGTGTGGTGTCC+GGG | + | chr2_4:12739789-12739808 | None:intergenic | 50.0% |
| !! | GGGAGAGAATGGATTGTGTG+TGG | + | chr2_4:12739797-12739816 | None:intergenic | 50.0% |
| !! | AGAAGGGGCATTAGGTTGGA+GGG | + | chr2_4:12739817-12739836 | None:intergenic | 50.0% |
| !! | TAGAAGGGGCATTAGGTTGG+AGG | + | chr2_4:12739818-12739837 | None:intergenic | 50.0% |
| TTGTGTGTGGTGTCCGGGAA+TGG | + | chr2_4:12739784-12739803 | None:intergenic | 55.0% | |
| TACGTGTGGATTCACGGGGA+AGG | + | chr2_4:12740029-12740048 | None:intergenic | 55.0% | |
| TTGGACTCGGACCTGGGCTA+GGG | + | chr2_4:12738638-12738657 | None:intergenic | 60.0% | |
| TTTGGACTCGGACCTGGGCT+AGG | + | chr2_4:12738639-12738658 | None:intergenic | 60.0% | |
| GTGTCCGGGAATGGTTGAGG+TGG | + | chr2_4:12739775-12739794 | None:intergenic | 60.0% | |
| GTGGTGTCCGGGAATGGTTG+AGG | + | chr2_4:12739778-12739797 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 12738034 | 12740496 | 12738034 | ID=Msa0315990;Name=Msa0315990 |
| chr2_4 | mRNA | 12738034 | 12740496 | 12738034 | ID=Msa0315990-mRNA-1;Parent=Msa0315990;Name=Msa0315990-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.33|0.25|1|0.33|0.25|4|70|183 |
| chr2_4 | exon | 12738034 | 12738196 | 12738034 | ID=Msa0315990-mRNA-1:exon:4872;Parent=Msa0315990-mRNA-1 |
| chr2_4 | exon | 12739598 | 12739794 | 12739598 | ID=Msa0315990-mRNA-1:exon:4871;Parent=Msa0315990-mRNA-1 |
| chr2_4 | exon | 12739831 | 12739996 | 12739831 | ID=Msa0315990-mRNA-1:exon:4870;Parent=Msa0315990-mRNA-1 |
| chr2_4 | exon | 12740401 | 12740496 | 12740401 | ID=Msa0315990-mRNA-1:exon:4869;Parent=Msa0315990-mRNA-1 |
| chr2_4 | CDS | 12740401 | 12740496 | 12740401 | ID=Msa0315990-mRNA-1:cds;Parent=Msa0315990-mRNA-1 |
| chr2_4 | CDS | 12739831 | 12739996 | 12739831 | ID=Msa0315990-mRNA-1:cds;Parent=Msa0315990-mRNA-1 |
| chr2_4 | CDS | 12739598 | 12739794 | 12739598 | ID=Msa0315990-mRNA-1:cds;Parent=Msa0315990-mRNA-1 |
| chr2_4 | CDS | 12738104 | 12738196 | 12738104 | ID=Msa0315990-mRNA-1:cds;Parent=Msa0315990-mRNA-1 |
| chr2_4 | three_prime_UTR | 12738034 | 12738103 | 12738034 | ID=Msa0315990-mRNA-1:three_prime_utr;Parent=Msa0315990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
