Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0200770 | KEH37333.1 | 97.229 | 433 | 11 | 1 | 1 | 433 | 1 | 432 | 0.0 | 835 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0200770 | sp|Q9SNC3|FLA4_ARATH | 55.202 | 346 | 137 | 5 | 26 | 357 | 29 | 370 | 9.60e-118 | 353 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0200770 | A0A072V7M5 | 97.229 | 433 | 11 | 1 | 1 | 433 | 1 | 432 | 0.0 | 835 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0191070 | Msa0200770 | -0.812224 | 4.721608e-51 | -8.615850e-47 |
Msa0200770 | Msa1089320 | -0.816437 | 5.533783e-52 | -8.615850e-47 |
Msa0200770 | Msa1364210 | -0.820893 | 5.392748e-53 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0200770 | MtrunA17_Chr2g0296571 | 98.507 | 402 | 5 | 1 | 1 | 402 | 1 | 401 | 0.0 | 780 |
Msa0200770 | MtrunA17_Chr7g0246041 | 32.759 | 348 | 214 | 11 | 27 | 372 | 23 | 352 | 1.09e-36 | 139 |
Msa0200770 | MtrunA17_Chr2g0285201 | 41.558 | 154 | 84 | 3 | 193 | 343 | 61 | 211 | 4.13e-31 | 119 |
Msa0200770 | MtrunA17_Chr3g0102421 | 28.840 | 319 | 213 | 10 | 27 | 344 | 31 | 336 | 1.15e-25 | 108 |
Msa0200770 | MtrunA17_Chr5g0448211 | 27.692 | 325 | 215 | 11 | 23 | 344 | 31 | 338 | 6.33e-22 | 97.4 |
Msa0200770 | MtrunA17_Chr7g0263981 | 31.677 | 161 | 101 | 4 | 190 | 346 | 35 | 190 | 3.31e-17 | 81.3 |
Msa0200770 | MtrunA17_Chr5g0448001 | 34.615 | 182 | 106 | 5 | 193 | 371 | 46 | 217 | 4.69e-17 | 80.9 |
Msa0200770 | MtrunA17_Chr4g0029501 | 32.870 | 216 | 131 | 7 | 194 | 404 | 72 | 278 | 1.82e-16 | 79.7 |
Msa0200770 | MtrunA17_Chr2g0326421 | 29.221 | 154 | 102 | 3 | 195 | 345 | 69 | 218 | 2.37e-14 | 73.2 |
Msa0200770 | MtrunA17_Chr2g0284451 | 31.288 | 163 | 97 | 5 | 190 | 343 | 68 | 224 | 5.24e-14 | 72.4 |
Msa0200770 | MtrunA17_Chr8g0379621 | 30.769 | 156 | 97 | 4 | 194 | 343 | 92 | 242 | 7.69e-14 | 72.0 |
Msa0200770 | MtrunA17_Chr4g0029441 | 30.387 | 181 | 116 | 5 | 194 | 371 | 72 | 245 | 7.77e-14 | 71.6 |
Msa0200770 | MtrunA17_Chr8g0379631 | 30.769 | 156 | 97 | 4 | 194 | 343 | 92 | 242 | 8.05e-14 | 72.0 |
Msa0200770 | MtrunA17_Chr4g0026611 | 30.337 | 178 | 115 | 5 | 194 | 366 | 76 | 249 | 1.93e-13 | 70.9 |
Msa0200770 | MtrunA17_Chr2g0325021 | 29.730 | 185 | 121 | 5 | 164 | 345 | 8 | 186 | 4.52e-13 | 68.9 |
Msa0200770 | MtrunA17_Chr8g0379611 | 31.544 | 149 | 95 | 4 | 195 | 340 | 77 | 221 | 6.70e-13 | 69.3 |
Msa0200770 | MtrunA17_Chr4g0029331 | 27.778 | 162 | 108 | 4 | 185 | 344 | 55 | 209 | 2.00e-12 | 67.4 |
Msa0200770 | MtrunA17_Chr2g0284411 | 29.213 | 178 | 117 | 6 | 195 | 369 | 68 | 239 | 2.10e-12 | 67.4 |
Msa0200770 | MtrunA17_Chr2g0326411 | 29.139 | 151 | 100 | 4 | 195 | 342 | 69 | 215 | 3.08e-12 | 67.0 |
Msa0200770 | MtrunA17_Chr2g0284431 | 29.213 | 178 | 117 | 6 | 195 | 369 | 89 | 260 | 5.77e-12 | 66.2 |
Msa0200770 | MtrunA17_Chr2g0334061 | 24.277 | 173 | 125 | 4 | 7 | 178 | 8 | 175 | 5.94e-12 | 66.6 |
Msa0200770 | MtrunA17_Chr2g0326431 | 28.947 | 152 | 102 | 3 | 195 | 344 | 41 | 188 | 8.06e-12 | 65.1 |
Msa0200770 | MtrunA17_Chr1g0148231 | 27.692 | 195 | 129 | 6 | 4 | 195 | 3 | 188 | 1.12e-11 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0200770 | AT3G46550.1 | 55.202 | 346 | 137 | 5 | 26 | 357 | 29 | 370 | 9.76e-119 | 353 |
Msa0200770 | AT2G45470.1 | 33.235 | 340 | 212 | 11 | 9 | 347 | 10 | 335 | 1.16e-35 | 136 |
Msa0200770 | AT3G60900.1 | 32.418 | 364 | 223 | 12 | 11 | 365 | 12 | 361 | 4.12e-31 | 124 |
Msa0200770 | AT5G55730.2 | 29.538 | 325 | 213 | 11 | 21 | 344 | 20 | 329 | 1.51e-25 | 108 |
Msa0200770 | AT5G55730.1 | 29.538 | 325 | 213 | 11 | 21 | 344 | 20 | 329 | 1.51e-25 | 108 |
Msa0200770 | AT4G12730.1 | 29.032 | 341 | 220 | 14 | 7 | 344 | 11 | 332 | 3.80e-24 | 103 |
Msa0200770 | AT5G44130.1 | 29.798 | 198 | 132 | 5 | 194 | 389 | 35 | 227 | 8.68e-18 | 82.8 |
Msa0200770 | AT5G60490.1 | 31.579 | 152 | 99 | 3 | 195 | 344 | 39 | 187 | 2.46e-17 | 81.6 |
Msa0200770 | AT1G03870.1 | 29.282 | 181 | 119 | 4 | 194 | 370 | 38 | 213 | 4.02e-15 | 75.1 |
Msa0200770 | AT2G20520.1 | 31.646 | 158 | 97 | 5 | 194 | 345 | 37 | 189 | 3.52e-14 | 72.4 |
Msa0200770 | AT5G03170.1 | 33.962 | 159 | 99 | 4 | 190 | 345 | 31 | 186 | 1.11e-13 | 70.9 |
Msa0200770 | AT2G04780.1 | 30.380 | 158 | 99 | 4 | 194 | 347 | 45 | 195 | 2.02e-13 | 70.5 |
Msa0200770 | AT2G04780.2 | 30.380 | 158 | 99 | 4 | 194 | 347 | 45 | 195 | 2.02e-13 | 70.5 |
Msa0200770 | AT3G12660.1 | 31.210 | 157 | 103 | 3 | 21 | 177 | 19 | 170 | 6.70e-13 | 68.9 |
Find 160 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCAGATGTTGCAAGTGTTTA+TGG | 0.107039 | 2_1:+21082545 | Msa0200770:CDS |
GCATAAATGTGAGGGTAATT+TGG | 0.208326 | 2_1:-21081383 | None:intergenic |
CATAAATGTGAGGGTAATTT+GGG | 0.214065 | 2_1:-21081382 | None:intergenic |
TTGTAATGGTGTTGGTGTTC+GGG | 0.251448 | 2_1:-21081773 | None:intergenic |
GATTAACACTGGCATTGTTC+AGG | 0.317584 | 2_1:+21082295 | Msa0200770:CDS |
TTGTTGCCAAGAGAGATATT+TGG | 0.326646 | 2_1:+21082380 | Msa0200770:CDS |
GAGGTGAATGTTGATAATTC+AGG | 0.334884 | 2_1:-21081474 | None:intergenic |
CTTTCTTCACCGCCAGGGTT+TGG | 0.356296 | 2_1:+21082509 | Msa0200770:CDS |
GCTTCAATGCTCTCCGCTTC+CGG | 0.361932 | 2_1:+21081996 | Msa0200770:CDS |
GTGAGGGTCGGTGGTGAGAT+AGG | 0.366350 | 2_1:-21081574 | None:intergenic |
TGTTGCCAAGAGAGATATTT+GGG | 0.370591 | 2_1:+21082381 | Msa0200770:CDS |
ATGGTGTTGGGGATAGGATT+AGG | 0.379163 | 2_1:-21081413 | None:intergenic |
GTGAGCATCGATGAGGGTTT+TGG | 0.379755 | 2_1:-21081958 | None:intergenic |
GGTCGGACCAGGAGAGGAAC+TGG | 0.383020 | 2_1:-21081653 | None:intergenic |
ATTGTAATGGTGTTGGTGTT+CGG | 0.388000 | 2_1:-21081774 | None:intergenic |
TGGTGTTGGTGTTCGGGGAG+TGG | 0.394617 | 2_1:-21081767 | None:intergenic |
GATGTCAGCGAGAGCGGAGG+GGG | 0.395262 | 2_1:-21081610 | None:intergenic |
TGGTGGCCCGGCCGGTGGTT+TGG | 0.397807 | 2_1:-21081719 | None:intergenic |
TCCTCCTCCAGTTCCTCTCC+TGG | 0.402978 | 2_1:+21081646 | Msa0200770:CDS |
GGTGTTGGTGTTCGGGGAGT+GGG | 0.411168 | 2_1:-21081766 | None:intergenic |
TGAAAGAGAAAGATGGTGTT+GGG | 0.411336 | 2_1:-21081425 | None:intergenic |
GGAGATTTCGCAGACACAAT+TGG | 0.413692 | 2_1:-21082410 | None:intergenic |
TGATTGTCATCTAGGCAAAT+CGG | 0.416449 | 2_1:-21083135 | None:intergenic |
CTTCGTGCTTATTACCCTCT+CGG | 0.420188 | 2_1:+21082167 | Msa0200770:CDS |
GGCCGGGCCACCAACAACTT+TGG | 0.425079 | 2_1:+21081729 | Msa0200770:CDS |
GGGGATAAACAAGGTAATTC+CGG | 0.425532 | 2_1:-21082054 | None:intergenic |
GTCGGTGGTGAGATAGGTGT+TGG | 0.428158 | 2_1:-21081568 | None:intergenic |
AAGAGTAAGGTGCTGGGGAA+TGG | 0.428506 | 2_1:-21081797 | None:intergenic |
GAAGCCGGTGAAGGTGGTTC+CGG | 0.429193 | 2_1:+21082035 | Msa0200770:CDS |
GGGGAGAGGTTATGGAGGTG+AGG | 0.434679 | 2_1:-21081591 | None:intergenic |
TTCTTCCCAAATATCTCTCT+TGG | 0.439416 | 2_1:-21082386 | None:intergenic |
TGAAAGAACGGTGGCGTTTG+AGG | 0.443446 | 2_1:-21081820 | None:intergenic |
GAGGTGTTGGAGGTCGGACC+AGG | 0.448627 | 2_1:-21081664 | None:intergenic |
AGAAAGATGGTGTTGGGGAT+AGG | 0.453694 | 2_1:-21081419 | None:intergenic |
GAGAGTGGTGACGAGTTTAC+CGG | 0.456170 | 2_1:-21081694 | None:intergenic |
TAAGAGTAGCCGATTGCGTT+TGG | 0.458312 | 2_1:+21083090 | Msa0200770:CDS |
AGAGGAACTGGAGGAGGATG+TGG | 0.458663 | 2_1:-21081641 | None:intergenic |
GACGCTTGCGACGGAAGCTA+TGG | 0.462272 | 2_1:+21082223 | Msa0200770:CDS |
CGGAGGGAGGGAGGTGTTGG+AGG | 0.464496 | 2_1:-21081674 | None:intergenic |
CCCTTACGGTTTCGATCTCA+TGG | 0.465462 | 2_1:+21081899 | Msa0200770:CDS |
GATGCTGCTTCTTCGCCGGC+GGG | 0.465731 | 2_1:+21082464 | Msa0200770:CDS |
ATTAACACTGGCATTGTTCA+GGG | 0.469145 | 2_1:+21082296 | Msa0200770:CDS |
GGTGAAGATAGTGAGATTGT+AGG | 0.469199 | 2_1:-21081859 | None:intergenic |
TCACATCTTTCTTCACCGCC+AGG | 0.471478 | 2_1:+21082503 | Msa0200770:CDS |
CTCTCTTCCAAACCACCGGC+CGG | 0.475597 | 2_1:+21081712 | Msa0200770:CDS |
TTCAGGGAAGGTTGAAAGGA+GGG | 0.476637 | 2_1:-21081457 | None:intergenic |
AGGTGAATGTTGATAATTCA+GGG | 0.477819 | 2_1:-21081473 | None:intergenic |
AGCCAAAGTTGTTGGTGGCC+CGG | 0.478504 | 2_1:-21081731 | None:intergenic |
TAGTGCTCCTCCTCCTTATG+AGG | 0.479474 | 2_1:+21082442 | Msa0200770:CDS |
GGGAGAGATCAGCGGTGAGA+GGG | 0.486859 | 2_1:-21081515 | None:intergenic |
GAAACACCGAAAATCGCAAT+AGG | 0.488328 | 2_1:-21082350 | None:intergenic |
TCGGTGGTGAGATAGGTGTT+GGG | 0.492560 | 2_1:-21081567 | None:intergenic |
TTCATTCACAACGCCGGAAG+CGG | 0.494673 | 2_1:-21082009 | None:intergenic |
TTTGAGGAAGAGTAAGGTGC+TGG | 0.494680 | 2_1:-21081804 | None:intergenic |
AAAGTTGTTGGTGGCCCGGC+CGG | 0.495578 | 2_1:-21081727 | None:intergenic |
TACCGGAGGGAGGGAGGTGT+TGG | 0.497410 | 2_1:-21081677 | None:intergenic |
CGGGGAGTGGGTGATGTTGA+CGG | 0.497837 | 2_1:-21081754 | None:intergenic |
AATTCCGGAACCACCTTCAC+CGG | 0.498505 | 2_1:-21082039 | None:intergenic |
GAAGAAGCAGCATCCTCATA+AGG | 0.500145 | 2_1:-21082455 | None:intergenic |
GTTGTTGGTGGCCCGGCCGG+TGG | 0.501570 | 2_1:-21081724 | None:intergenic |
ACTCCTTCACCAAACGCAAT+CGG | 0.503931 | 2_1:-21083099 | None:intergenic |
TCGGCGAAAGCATCGTCGAC+GGG | 0.505539 | 2_1:-21082074 | None:intergenic |
AGGATGTCAGCGAGAGCGGA+GGG | 0.508490 | 2_1:-21081612 | None:intergenic |
GTCGCAAGCGTCGGTTGCAA+CGG | 0.511457 | 2_1:-21082212 | None:intergenic |
GCGACGGAAGCTATGGGTGC+TGG | 0.514984 | 2_1:+21082230 | Msa0200770:CDS |
AGGTTGAAAGGAGGGAGGTG+AGG | 0.516160 | 2_1:-21081449 | None:intergenic |
ATAATTCAGGGAAGGTTGAA+AGG | 0.519692 | 2_1:-21081461 | None:intergenic |
CTCCAACACCTCCCTCCCTC+CGG | 0.523989 | 2_1:+21081675 | Msa0200770:CDS |
GGAGGAGGAGCACTACTGTC+CGG | 0.524608 | 2_1:-21082434 | None:intergenic |
TTGAAAGAGAAAGATGGTGT+TGG | 0.524791 | 2_1:-21081426 | None:intergenic |
CACATCTTTCTTCACCGCCA+GGG | 0.525421 | 2_1:+21082504 | Msa0200770:CDS |
GTTATGGAGGTGAGGGTCGG+TGG | 0.527291 | 2_1:-21081583 | None:intergenic |
GTGAAGATAGTGAGATTGTA+GGG | 0.528446 | 2_1:-21081858 | None:intergenic |
GGGAGGGAGGTGTTGGAGGT+CGG | 0.529487 | 2_1:-21081670 | None:intergenic |
ATTCAGGGAAGGTTGAAAGG+AGG | 0.530201 | 2_1:-21081458 | None:intergenic |
TAGCCGATTGCGTTTGGTGA+AGG | 0.530712 | 2_1:+21083096 | Msa0200770:CDS |
TGGGAGAGATCAGCGGTGAG+AGG | 0.533298 | 2_1:-21081516 | None:intergenic |
TCTCTTCCAAACCACCGGCC+GGG | 0.536880 | 2_1:+21081713 | Msa0200770:CDS |
GCGGAGGATGTCAGCGAGAG+CGG | 0.537341 | 2_1:-21081616 | None:intergenic |
ACTGGAGGAGGATGTGGTAG+CGG | 0.540375 | 2_1:-21081635 | None:intergenic |
GGAGAGAGAGTGAATTGCGG+TGG | 0.541485 | 2_1:-21081536 | None:intergenic |
GGAATGGATTGTAATGGTGT+TGG | 0.543280 | 2_1:-21081781 | None:intergenic |
GTTGACGGAGCCAAAGTTGT+TGG | 0.548182 | 2_1:-21081739 | None:intergenic |
GAGGATGTCAGCGAGAGCGG+AGG | 0.550692 | 2_1:-21081613 | None:intergenic |
GGGAGAGGTTATGGAGGTGA+GGG | 0.552715 | 2_1:-21081590 | None:intergenic |
GATTGTCATCTAGGCAAATC+GGG | 0.553071 | 2_1:-21083134 | None:intergenic |
TGCTGGGGAATGGATTGTAA+TGG | 0.553637 | 2_1:-21081787 | None:intergenic |
GGATGCTGCTTCTTCGCCGG+CGG | 0.553952 | 2_1:+21082463 | Msa0200770:CDS |
TGTAATGGTGTTGGTGTTCG+GGG | 0.554234 | 2_1:-21081772 | None:intergenic |
ACCAGGAGAGGAACTGGAGG+AGG | 0.555679 | 2_1:-21081647 | None:intergenic |
CGGTTTCGATCTCATGGCAT+CGG | 0.555806 | 2_1:+21081905 | Msa0200770:CDS |
GTGATGTTGAGAAGAATGCT+TGG | 0.555902 | 2_1:-21081936 | None:intergenic |
GCCATGAGATCGAAACCGTA+AGG | 0.558245 | 2_1:-21081900 | None:intergenic |
GTGGCGTTTGAGGAAGAGTA+AGG | 0.559294 | 2_1:-21081810 | None:intergenic |
GAGGTTATGGAGGTGAGGGT+CGG | 0.559779 | 2_1:-21081586 | None:intergenic |
GTGAGGTTGAAAGAGAAAGA+TGG | 0.560128 | 2_1:-21081432 | None:intergenic |
GGAAATATAGCATAAATGTG+AGG | 0.561824 | 2_1:-21081392 | None:intergenic |
TGAGGATGCTGCTTCTTCGC+CGG | 0.566290 | 2_1:+21082460 | Msa0200770:CDS |
CGAAACGGAAGGAGGTAGAT+CGG | 0.567781 | 2_1:-21082093 | None:intergenic |
TTGAGGAAGAGTAAGGTGCT+GGG | 0.571039 | 2_1:-21081803 | None:intergenic |
GAGAGATCAGCGGTGAGAGG+GGG | 0.573409 | 2_1:-21081513 | None:intergenic |
GGAGAGATCAGCGGTGAGAG+GGG | 0.577869 | 2_1:-21081514 | None:intergenic |
GAATTCGAAGCCGGTGAAGG+TGG | 0.580678 | 2_1:+21082029 | Msa0200770:CDS |
GACGGAGCCAAAGTTGTTGG+TGG | 0.580994 | 2_1:-21081736 | None:intergenic |
GAAATATAGCATAAATGTGA+GGG | 0.582631 | 2_1:-21081391 | None:intergenic |
GGCTCTGTTGCGATTAACAC+TGG | 0.583502 | 2_1:+21082284 | Msa0200770:CDS |
CGGACCAGGAGAGGAACTGG+AGG | 0.586171 | 2_1:-21081650 | None:intergenic |
ATAGCTTCCGTCGCAAGCGT+CGG | 0.587413 | 2_1:-21082221 | None:intergenic |
GAGAGAGAGTGAATTGCGGT+GGG | 0.591977 | 2_1:-21081535 | None:intergenic |
ATCGGCGAAAGCATCGTCGA+CGG | 0.592319 | 2_1:-21082075 | None:intergenic |
ACGCTTGCGACGGAAGCTAT+GGG | 0.595227 | 2_1:+21082224 | Msa0200770:CDS |
TTCGAATTCATTCACAACGC+CGG | 0.596662 | 2_1:-21082015 | None:intergenic |
GGGAAGTGATTGAAGCGAAA+CGG | 0.597351 | 2_1:-21082108 | None:intergenic |
ACCACTCTCTTCCAAACCAC+CGG | 0.598222 | 2_1:+21081708 | Msa0200770:CDS |
AGGGATTAAAAGAGAATCAA+CGG | 0.602507 | 2_1:-21081880 | None:intergenic |
GAAATTGTGAGCATCGATGA+GGG | 0.603493 | 2_1:-21081964 | None:intergenic |
GAATGTTGATAATTCAGGGA+AGG | 0.603611 | 2_1:-21081469 | None:intergenic |
GGTGAGATAGGTGTTGGGGA+CGG | 0.604958 | 2_1:-21081562 | None:intergenic |
TGACGAGTTTACCGGAGGGA+GGG | 0.605757 | 2_1:-21081686 | None:intergenic |
GCAGCATCCTCATAAGGAGG+AGG | 0.606713 | 2_1:-21082449 | None:intergenic |
ATCGTCGACGGGGATAAACA+AGG | 0.609796 | 2_1:-21082063 | None:intergenic |
TGAAATTGTGAGCATCGATG+AGG | 0.610224 | 2_1:-21081965 | None:intergenic |
GGATGTCAGCGAGAGCGGAG+GGG | 0.610527 | 2_1:-21081611 | None:intergenic |
CGAGTTTACCGGAGGGAGGG+AGG | 0.611461 | 2_1:-21081683 | None:intergenic |
AGTGATTGAAGCGAAACGGA+AGG | 0.612745 | 2_1:-21082104 | None:intergenic |
TGTGTCTGCGAAATCTCCAC+CGG | 0.616503 | 2_1:+21082415 | Msa0200770:CDS |
CGGTTGCAACGGATTCGCAG+TGG | 0.617668 | 2_1:-21082201 | None:intergenic |
GTTGCAACCGACGCTTGCGA+CGG | 0.617749 | 2_1:+21082214 | Msa0200770:CDS |
AGGGAAGGTTGAAAGGAGGG+AGG | 0.618290 | 2_1:-21081454 | None:intergenic |
CGGTGGTGAGATAGGTGTTG+GGG | 0.618735 | 2_1:-21081566 | None:intergenic |
GGCTGTACATCAAAACCCGC+CGG | 0.624496 | 2_1:-21082479 | None:intergenic |
GCCGGTGGTTTGGAAGAGAG+TGG | 0.626248 | 2_1:-21081709 | None:intergenic |
TGGATTGAAGCGAACCGAGA+GGG | 0.627636 | 2_1:-21082181 | None:intergenic |
TTAACACTGGCATTGTTCAG+GGG | 0.631498 | 2_1:+21082297 | Msa0200770:CDS |
GGAGGAGGATGTGGTAGCGG+AGG | 0.631708 | 2_1:-21081632 | None:intergenic |
GTGACGAGTTTACCGGAGGG+AGG | 0.632618 | 2_1:-21081687 | None:intergenic |
CCATGAGATCGAAACCGTAA+GGG | 0.633243 | 2_1:-21081899 | None:intergenic |
AATGAATTCGAAGCCGGTGA+AGG | 0.633955 | 2_1:+21082026 | Msa0200770:CDS |
GTTGTGAATGAATTCGAAGC+CGG | 0.634796 | 2_1:+21082020 | Msa0200770:CDS |
GAAAGAGAAAGATGGTGTTG+GGG | 0.638474 | 2_1:-21081424 | None:intergenic |
AGTGGTGACGAGTTTACCGG+AGG | 0.642661 | 2_1:-21081691 | None:intergenic |
GGGTGTGGAAGAAAGTAGGG+AGG | 0.644752 | 2_1:-21081493 | None:intergenic |
GTTGGAGGTCGGACCAGGAG+AGG | 0.645093 | 2_1:-21081659 | None:intergenic |
CGGCGAAAGCATCGTCGACG+GGG | 0.646874 | 2_1:-21082073 | None:intergenic |
CTAACATCTTCACCAAACCC+TGG | 0.655235 | 2_1:-21082521 | None:intergenic |
TGAGGAAGAGTAAGGTGCTG+GGG | 0.655459 | 2_1:-21081802 | None:intergenic |
GGAGGAGCACTACTGTCCGG+TGG | 0.656903 | 2_1:-21082431 | None:intergenic |
GGCGGTGAAGAAAGATGTGA+CGG | 0.657561 | 2_1:-21082500 | None:intergenic |
GAAGCAGCATCCTCATAAGG+AGG | 0.663333 | 2_1:-21082452 | None:intergenic |
GTGGTGACGAGTTTACCGGA+GGG | 0.663417 | 2_1:-21081690 | None:intergenic |
GATAGGTGTTGGGGACGGCG+AGG | 0.663521 | 2_1:-21081557 | None:intergenic |
GATTGAAGCGAAACGGAAGG+AGG | 0.667934 | 2_1:-21082101 | None:intergenic |
GTTTGGTGAAGGAGTTTGCG+CGG | 0.675160 | 2_1:+21083107 | Msa0200770:CDS |
AACATGCGCTTTGAGAACAA+CGG | 0.685880 | 2_1:-21082144 | None:intergenic |
ATAAATGTGAGGGTAATTTG+GGG | 0.699886 | 2_1:-21081381 | None:intergenic |
CGAGGAGAGAGAGTGAATTG+CGG | 0.703819 | 2_1:-21081539 | None:intergenic |
GTGGATTGAAGCGAACCGAG+AGG | 0.709717 | 2_1:-21082182 | None:intergenic |
ATTGCGGTGGGAGAGATCAG+CGG | 0.710115 | 2_1:-21081523 | None:intergenic |
TTTGAGCTGTGAAAGAACGG+TGG | 0.719224 | 2_1:-21081829 | None:intergenic |
ACATCTTCACCAAACCCTGG+CGG | 0.727699 | 2_1:-21082518 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTGTATTATTATTTTTTTG+TGG | + | chr2_1:21082629-21082648 | Msa0200770:intron | 10.0% |
!!! | TTGTATTATTATTTTTTTGT+GGG | + | chr2_1:21082630-21082649 | Msa0200770:intron | 10.0% |
!!! | TTATTGTTATTATCAATATT+AGG | + | chr2_1:21082699-21082718 | Msa0200770:intron | 10.0% |
!! | ATAATGATTATTCTATAATA+TGG | - | chr2_1:21082772-21082791 | None:intergenic | 10.0% |
!! | AATAATATTACTAACAATTA+TGG | - | chr2_1:21082811-21082830 | None:intergenic | 10.0% |
!!! | TTGAATATTTCAACTTTTAA+TGG | + | chr2_1:21082263-21082282 | Msa0200770:CDS | 15.0% |
!!! | TGTATTATTATTTTTTTGTG+GGG | + | chr2_1:21082631-21082650 | Msa0200770:intron | 15.0% |
!!! | TTAATAATTTCCTTTTTCAA+TGG | + | chr2_1:21082951-21082970 | Msa0200770:intron | 15.0% |
!! | CAAGTATAAATTAAGTAAAA+TGG | - | chr2_1:21083027-21083046 | None:intergenic | 15.0% |
!! | AACTCTTAATGATAATACAA+AGG | - | chr2_1:21082896-21082915 | None:intergenic | 20.0% |
! | GAAATATAGCATAAATGTGA+GGG | - | chr2_1:21081394-21081413 | None:intergenic | 25.0% |
! | TATGTCTAATACAAAGACAA+TGG | - | chr2_1:21082930-21082949 | None:intergenic | 25.0% |
! | ATCTTACAATCCATTGAAAA+AGG | - | chr2_1:21082964-21082983 | None:intergenic | 25.0% |
!!! | TTTCAATGGATTGTAAGATT+TGG | + | chr2_1:21082965-21082984 | Msa0200770:intron | 25.0% |
! | TTACTTAATTTATACTTGCC+AGG | + | chr2_1:21083029-21083048 | Msa0200770:intron | 25.0% |
ATAAATGTGAGGGTAATTTG+GGG | - | chr2_1:21081384-21081403 | None:intergenic | 30.0% | |
CATAAATGTGAGGGTAATTT+GGG | - | chr2_1:21081385-21081404 | None:intergenic | 30.0% | |
GGAAATATAGCATAAATGTG+AGG | - | chr2_1:21081395-21081414 | None:intergenic | 30.0% | |
!! | AGGTGAATGTTGATAATTCA+GGG | - | chr2_1:21081476-21081495 | None:intergenic | 30.0% |
AGGGATTAAAAGAGAATCAA+CGG | - | chr2_1:21081883-21081902 | None:intergenic | 30.0% | |
! | GATTCTCTTTTAATCCCTTA+CGG | + | chr2_1:21081885-21081904 | Msa0200770:CDS | 30.0% |
CAATTAACGTGTACAAAAAG+TGG | - | chr2_1:21082674-21082693 | None:intergenic | 30.0% | |
!!! | ATGGTTTTGATAACAACACA+GGG | - | chr2_1:21083008-21083027 | None:intergenic | 30.0% |
!!! | AATGGTTTTGATAACAACAC+AGG | - | chr2_1:21083009-21083028 | None:intergenic | 30.0% |
GCATAAATGTGAGGGTAATT+TGG | - | chr2_1:21081386-21081405 | None:intergenic | 35.0% | |
TGAAAGAGAAAGATGGTGTT+GGG | - | chr2_1:21081428-21081447 | None:intergenic | 35.0% | |
TTGAAAGAGAAAGATGGTGT+TGG | - | chr2_1:21081429-21081448 | None:intergenic | 35.0% | |
ATAATTCAGGGAAGGTTGAA+AGG | - | chr2_1:21081464-21081483 | None:intergenic | 35.0% | |
!! | GAATGTTGATAATTCAGGGA+AGG | - | chr2_1:21081472-21081491 | None:intergenic | 35.0% |
!! | GAGGTGAATGTTGATAATTC+AGG | - | chr2_1:21081477-21081496 | None:intergenic | 35.0% |
!! | ATTGTAATGGTGTTGGTGTT+CGG | - | chr2_1:21081777-21081796 | None:intergenic | 35.0% |
! | CATTTTGAGCTGTGAAAGAA+CGG | - | chr2_1:21081835-21081854 | None:intergenic | 35.0% |
GTGAAGATAGTGAGATTGTA+GGG | - | chr2_1:21081861-21081880 | None:intergenic | 35.0% | |
ATTAACACTGGCATTGTTCA+GGG | + | chr2_1:21082296-21082315 | Msa0200770:CDS | 35.0% | |
! | CAGAATCCTATTGCGATTTT+CGG | + | chr2_1:21082344-21082363 | Msa0200770:CDS | 35.0% |
TTGTTGCCAAGAGAGATATT+TGG | + | chr2_1:21082380-21082399 | Msa0200770:CDS | 35.0% | |
TGTTGCCAAGAGAGATATTT+GGG | + | chr2_1:21082381-21082400 | Msa0200770:CDS | 35.0% | |
TTCTTCCCAAATATCTCTCT+TGG | - | chr2_1:21082389-21082408 | None:intergenic | 35.0% | |
TCAGATGTTGCAAGTGTTTA+TGG | + | chr2_1:21082545-21082564 | Msa0200770:CDS | 35.0% | |
CATGAGAGGCAATAAAAAAG+AGG | - | chr2_1:21082737-21082756 | None:intergenic | 35.0% | |
!!! | GATGCAGTTTCTCTGTTTTT+TGG | + | chr2_1:21082849-21082868 | Msa0200770:intron | 35.0% |
! | ACAAGTGATTTTATGCTGAC+AGG | + | chr2_1:21083058-21083077 | Msa0200770:CDS | 35.0% |
! | CAAGTGATTTTATGCTGACA+GGG | + | chr2_1:21083059-21083078 | Msa0200770:CDS | 35.0% |
! | GAAAGAGAAAGATGGTGTTG+GGG | - | chr2_1:21081427-21081446 | None:intergenic | 40.0% |
GTGAGGTTGAAAGAGAAAGA+TGG | - | chr2_1:21081435-21081454 | None:intergenic | 40.0% | |
!! | TTGTAATGGTGTTGGTGTTC+GGG | - | chr2_1:21081776-21081795 | None:intergenic | 40.0% |
!! | GGAATGGATTGTAATGGTGT+TGG | - | chr2_1:21081784-21081803 | None:intergenic | 40.0% |
GGTGAAGATAGTGAGATTGT+AGG | - | chr2_1:21081862-21081881 | None:intergenic | 40.0% | |
GTGATGTTGAGAAGAATGCT+TGG | - | chr2_1:21081939-21081958 | None:intergenic | 40.0% | |
!! | GAAATTGTGAGCATCGATGA+GGG | - | chr2_1:21081967-21081986 | None:intergenic | 40.0% |
!! | TGAAATTGTGAGCATCGATG+AGG | - | chr2_1:21081968-21081987 | None:intergenic | 40.0% |
TTCGAATTCATTCACAACGC+CGG | - | chr2_1:21082018-21082037 | None:intergenic | 40.0% | |
GTTGTGAATGAATTCGAAGC+CGG | + | chr2_1:21082020-21082039 | Msa0200770:CDS | 40.0% | |
GGGGATAAACAAGGTAATTC+CGG | - | chr2_1:21082057-21082076 | None:intergenic | 40.0% | |
! | GAGAACAACGGCTTTTTGAT+CGG | - | chr2_1:21082135-21082154 | None:intergenic | 40.0% |
!! | AACATGCGCTTTGAGAACAA+CGG | - | chr2_1:21082147-21082166 | None:intergenic | 40.0% |
GATTAACACTGGCATTGTTC+AGG | + | chr2_1:21082295-21082314 | Msa0200770:CDS | 40.0% | |
TTAACACTGGCATTGTTCAG+GGG | + | chr2_1:21082297-21082316 | Msa0200770:CDS | 40.0% | |
GAAACACCGAAAATCGCAAT+AGG | - | chr2_1:21082353-21082372 | None:intergenic | 40.0% | |
GGTGTAAAGAAGAACATGAG+AGG | - | chr2_1:21082751-21082770 | None:intergenic | 40.0% | |
AAAATCACTTGTGCTACACC+TGG | - | chr2_1:21083050-21083069 | None:intergenic | 40.0% | |
! | ATGGTGTTGGGGATAGGATT+AGG | - | chr2_1:21081416-21081435 | None:intergenic | 45.0% |
! | AGAAAGATGGTGTTGGGGAT+AGG | - | chr2_1:21081422-21081441 | None:intergenic | 45.0% |
TTCAGGGAAGGTTGAAAGGA+GGG | - | chr2_1:21081460-21081479 | None:intergenic | 45.0% | |
ATTCAGGGAAGGTTGAAAGG+AGG | - | chr2_1:21081461-21081480 | None:intergenic | 45.0% | |
!! | TGTAATGGTGTTGGTGTTCG+GGG | - | chr2_1:21081775-21081794 | None:intergenic | 45.0% |
!! | TGCTGGGGAATGGATTGTAA+TGG | - | chr2_1:21081790-21081809 | None:intergenic | 45.0% |
! | TTGAGGAAGAGTAAGGTGCT+GGG | - | chr2_1:21081806-21081825 | None:intergenic | 45.0% |
TTTGAGGAAGAGTAAGGTGC+TGG | - | chr2_1:21081807-21081826 | None:intergenic | 45.0% | |
TTTGAGCTGTGAAAGAACGG+TGG | - | chr2_1:21081832-21081851 | None:intergenic | 45.0% | |
CCATGAGATCGAAACCGTAA+GGG | - | chr2_1:21081902-21081921 | None:intergenic | 45.0% | |
AATGAATTCGAAGCCGGTGA+AGG | + | chr2_1:21082026-21082045 | Msa0200770:CDS | 45.0% | |
AGTGATTGAAGCGAAACGGA+AGG | - | chr2_1:21082107-21082126 | None:intergenic | 45.0% | |
GGGAAGTGATTGAAGCGAAA+CGG | - | chr2_1:21082111-21082130 | None:intergenic | 45.0% | |
! | AACAACGGCTTTTTGATCGG+CGG | - | chr2_1:21082132-21082151 | None:intergenic | 45.0% |
CTTCGTGCTTATTACCCTCT+CGG | + | chr2_1:21082167-21082186 | Msa0200770:CDS | 45.0% | |
!!! | TGCGATTTTCGGTGTTTCGA+AGG | + | chr2_1:21082355-21082374 | Msa0200770:CDS | 45.0% |
GGAGATTTCGCAGACACAAT+TGG | - | chr2_1:21082413-21082432 | None:intergenic | 45.0% | |
GAAGAAGCAGCATCCTCATA+AGG | - | chr2_1:21082458-21082477 | None:intergenic | 45.0% | |
CTAACATCTTCACCAAACCC+TGG | - | chr2_1:21082524-21082543 | None:intergenic | 45.0% | |
!! | TGGTCTTGTCTTGTAGCACT+AGG | + | chr2_1:21082869-21082888 | Msa0200770:intron | 45.0% |
TAAGAGTAGCCGATTGCGTT+TGG | + | chr2_1:21083090-21083109 | Msa0200770:CDS | 45.0% | |
ACTCCTTCACCAAACGCAAT+CGG | - | chr2_1:21083102-21083121 | None:intergenic | 45.0% | |
! | AGGGGGTGTGGAAGAAAGTA+GGG | - | chr2_1:21081499-21081518 | None:intergenic | 50.0% |
GAGAGAGAGTGAATTGCGGT+GGG | - | chr2_1:21081538-21081557 | None:intergenic | 50.0% | |
CGAGGAGAGAGAGTGAATTG+CGG | - | chr2_1:21081542-21081561 | None:intergenic | 50.0% | |
TCGGTGGTGAGATAGGTGTT+GGG | - | chr2_1:21081570-21081589 | None:intergenic | 50.0% | |
! | GAGAGTGGTGACGAGTTTAC+CGG | - | chr2_1:21081697-21081716 | None:intergenic | 50.0% |
ACCACTCTCTTCCAAACCAC+CGG | + | chr2_1:21081708-21081727 | Msa0200770:CDS | 50.0% | |
GTTGACGGAGCCAAAGTTGT+TGG | - | chr2_1:21081742-21081761 | None:intergenic | 50.0% | |
!! | AAGAGTAAGGTGCTGGGGAA+TGG | - | chr2_1:21081800-21081819 | None:intergenic | 50.0% |
!! | TGAGGAAGAGTAAGGTGCTG+GGG | - | chr2_1:21081805-21081824 | None:intergenic | 50.0% |
GTGGCGTTTGAGGAAGAGTA+AGG | - | chr2_1:21081813-21081832 | None:intergenic | 50.0% | |
TGAAAGAACGGTGGCGTTTG+AGG | - | chr2_1:21081823-21081842 | None:intergenic | 50.0% | |
CCCTTACGGTTTCGATCTCA+TGG | + | chr2_1:21081899-21081918 | Msa0200770:CDS | 50.0% | |
GCCATGAGATCGAAACCGTA+AGG | - | chr2_1:21081903-21081922 | None:intergenic | 50.0% | |
CGGTTTCGATCTCATGGCAT+CGG | + | chr2_1:21081905-21081924 | Msa0200770:CDS | 50.0% | |
!!! | GTGAGCATCGATGAGGGTTT+TGG | - | chr2_1:21081961-21081980 | None:intergenic | 50.0% |
TTCATTCACAACGCCGGAAG+CGG | - | chr2_1:21082012-21082031 | None:intergenic | 50.0% | |
AATTCCGGAACCACCTTCAC+CGG | - | chr2_1:21082042-21082061 | None:intergenic | 50.0% | |
ATCGTCGACGGGGATAAACA+AGG | - | chr2_1:21082066-21082085 | None:intergenic | 50.0% | |
CGAAACGGAAGGAGGTAGAT+CGG | - | chr2_1:21082096-21082115 | None:intergenic | 50.0% | |
GATTGAAGCGAAACGGAAGG+AGG | - | chr2_1:21082104-21082123 | None:intergenic | 50.0% | |
! | ACAACGGCTTTTTGATCGGC+GGG | - | chr2_1:21082131-21082150 | None:intergenic | 50.0% |
TGGATTGAAGCGAACCGAGA+GGG | - | chr2_1:21082184-21082203 | None:intergenic | 50.0% | |
GGCTCTGTTGCGATTAACAC+TGG | + | chr2_1:21082284-21082303 | Msa0200770:CDS | 50.0% | |
TGTGTCTGCGAAATCTCCAC+CGG | + | chr2_1:21082415-21082434 | Msa0200770:CDS | 50.0% | |
TAGTGCTCCTCCTCCTTATG+AGG | + | chr2_1:21082442-21082461 | Msa0200770:CDS | 50.0% | |
GAAGCAGCATCCTCATAAGG+AGG | - | chr2_1:21082455-21082474 | None:intergenic | 50.0% | |
GGCGGTGAAGAAAGATGTGA+CGG | - | chr2_1:21082503-21082522 | None:intergenic | 50.0% | |
TCACATCTTTCTTCACCGCC+AGG | + | chr2_1:21082503-21082522 | Msa0200770:CDS | 50.0% | |
CACATCTTTCTTCACCGCCA+GGG | + | chr2_1:21082504-21082523 | Msa0200770:CDS | 50.0% | |
ACATCTTCACCAAACCCTGG+CGG | - | chr2_1:21082521-21082540 | None:intergenic | 50.0% | |
! | TAGCCGATTGCGTTTGGTGA+AGG | + | chr2_1:21083096-21083115 | Msa0200770:CDS | 50.0% |
! | GTTTGGTGAAGGAGTTTGCG+CGG | + | chr2_1:21083107-21083126 | Msa0200770:CDS | 50.0% |
AGGTTGAAAGGAGGGAGGTG+AGG | - | chr2_1:21081452-21081471 | None:intergenic | 55.0% | |
AGGGAAGGTTGAAAGGAGGG+AGG | - | chr2_1:21081457-21081476 | None:intergenic | 55.0% | |
GGGTGTGGAAGAAAGTAGGG+AGG | - | chr2_1:21081496-21081515 | None:intergenic | 55.0% | |
! | GAGGGGGTGTGGAAGAAAGT+AGG | - | chr2_1:21081500-21081519 | None:intergenic | 55.0% |
ATTGCGGTGGGAGAGATCAG+CGG | - | chr2_1:21081526-21081545 | None:intergenic | 55.0% | |
GGAGAGAGAGTGAATTGCGG+TGG | - | chr2_1:21081539-21081558 | None:intergenic | 55.0% | |
!! | GGTGAGATAGGTGTTGGGGA+CGG | - | chr2_1:21081565-21081584 | None:intergenic | 55.0% |
! | CGGTGGTGAGATAGGTGTTG+GGG | - | chr2_1:21081569-21081588 | None:intergenic | 55.0% |
GTCGGTGGTGAGATAGGTGT+TGG | - | chr2_1:21081571-21081590 | None:intergenic | 55.0% | |
GAGGTTATGGAGGTGAGGGT+CGG | - | chr2_1:21081589-21081608 | None:intergenic | 55.0% | |
GGGAGAGGTTATGGAGGTGA+GGG | - | chr2_1:21081593-21081612 | None:intergenic | 55.0% | |
ACTGGAGGAGGATGTGGTAG+CGG | - | chr2_1:21081638-21081657 | None:intergenic | 55.0% | |
AGAGGAACTGGAGGAGGATG+TGG | - | chr2_1:21081644-21081663 | None:intergenic | 55.0% | |
TGACGAGTTTACCGGAGGGA+GGG | - | chr2_1:21081689-21081708 | None:intergenic | 55.0% | |
! | GTGGTGACGAGTTTACCGGA+GGG | - | chr2_1:21081693-21081712 | None:intergenic | 55.0% |
! | AGTGGTGACGAGTTTACCGG+AGG | - | chr2_1:21081694-21081713 | None:intergenic | 55.0% |
!! | AGCCAAAGTTGTTGGTGGCC+CGG | - | chr2_1:21081734-21081753 | None:intergenic | 55.0% |
GACGGAGCCAAAGTTGTTGG+TGG | - | chr2_1:21081739-21081758 | None:intergenic | 55.0% | |
GCTTCAATGCTCTCCGCTTC+CGG | + | chr2_1:21081996-21082015 | Msa0200770:CDS | 55.0% | |
GAATTCGAAGCCGGTGAAGG+TGG | + | chr2_1:21082029-21082048 | Msa0200770:CDS | 55.0% | |
!! | ATCGGCGAAAGCATCGTCGA+CGG | - | chr2_1:21082078-21082097 | None:intergenic | 55.0% |
! | GTGGATTGAAGCGAACCGAG+AGG | - | chr2_1:21082185-21082204 | None:intergenic | 55.0% |
ATAGCTTCCGTCGCAAGCGT+CGG | - | chr2_1:21082224-21082243 | None:intergenic | 55.0% | |
ACGCTTGCGACGGAAGCTAT+GGG | + | chr2_1:21082224-21082243 | Msa0200770:CDS | 55.0% | |
GCAGCATCCTCATAAGGAGG+AGG | - | chr2_1:21082452-21082471 | None:intergenic | 55.0% | |
! | TGAGGATGCTGCTTCTTCGC+CGG | + | chr2_1:21082460-21082479 | Msa0200770:CDS | 55.0% |
GGCTGTACATCAAAACCCGC+CGG | - | chr2_1:21082482-21082501 | None:intergenic | 55.0% | |
CTTTCTTCACCGCCAGGGTT+TGG | + | chr2_1:21082509-21082528 | Msa0200770:CDS | 55.0% | |
GAGAGATCAGCGGTGAGAGG+GGG | - | chr2_1:21081516-21081535 | None:intergenic | 60.0% | |
GGAGAGATCAGCGGTGAGAG+GGG | - | chr2_1:21081517-21081536 | None:intergenic | 60.0% | |
GGGAGAGATCAGCGGTGAGA+GGG | - | chr2_1:21081518-21081537 | None:intergenic | 60.0% | |
TGGGAGAGATCAGCGGTGAG+AGG | - | chr2_1:21081519-21081538 | None:intergenic | 60.0% | |
GTGAGGGTCGGTGGTGAGAT+AGG | - | chr2_1:21081577-21081596 | None:intergenic | 60.0% | |
GTTATGGAGGTGAGGGTCGG+TGG | - | chr2_1:21081586-21081605 | None:intergenic | 60.0% | |
GGGGAGAGGTTATGGAGGTG+AGG | - | chr2_1:21081594-21081613 | None:intergenic | 60.0% | |
AGGATGTCAGCGAGAGCGGA+GGG | - | chr2_1:21081615-21081634 | None:intergenic | 60.0% | |
TCCTCCTCCAGTTCCTCTCC+TGG | + | chr2_1:21081646-21081665 | Msa0200770:CDS | 60.0% | |
ACCAGGAGAGGAACTGGAGG+AGG | - | chr2_1:21081650-21081669 | None:intergenic | 60.0% | |
GTGACGAGTTTACCGGAGGG+AGG | - | chr2_1:21081690-21081709 | None:intergenic | 60.0% | |
! | GCCGGTGGTTTGGAAGAGAG+TGG | - | chr2_1:21081712-21081731 | None:intergenic | 60.0% |
CTCTCTTCCAAACCACCGGC+CGG | + | chr2_1:21081712-21081731 | Msa0200770:CDS | 60.0% | |
TCTCTTCCAAACCACCGGCC+GGG | + | chr2_1:21081713-21081732 | Msa0200770:CDS | 60.0% | |
!! | AAAGTTGTTGGTGGCCCGGC+CGG | - | chr2_1:21081730-21081749 | None:intergenic | 60.0% |
CGGGGAGTGGGTGATGTTGA+CGG | - | chr2_1:21081757-21081776 | None:intergenic | 60.0% | |
!! | GGTGTTGGTGTTCGGGGAGT+GGG | - | chr2_1:21081769-21081788 | None:intergenic | 60.0% |
!! | TGGTGTTGGTGTTCGGGGAG+TGG | - | chr2_1:21081770-21081789 | None:intergenic | 60.0% |
GAAGCCGGTGAAGGTGGTTC+CGG | + | chr2_1:21082035-21082054 | Msa0200770:CDS | 60.0% | |
!! | TCGGCGAAAGCATCGTCGAC+GGG | - | chr2_1:21082077-21082096 | None:intergenic | 60.0% |
! | CGGTTGCAACGGATTCGCAG+TGG | - | chr2_1:21082204-21082223 | None:intergenic | 60.0% |
!! | GTCGCAAGCGTCGGTTGCAA+CGG | - | chr2_1:21082215-21082234 | None:intergenic | 60.0% |
GTTGCAACCGACGCTTGCGA+CGG | + | chr2_1:21082214-21082233 | Msa0200770:CDS | 60.0% | |
GACGCTTGCGACGGAAGCTA+TGG | + | chr2_1:21082223-21082242 | Msa0200770:CDS | 60.0% | |
!! | GGAGGAGGAGCACTACTGTC+CGG | - | chr2_1:21082437-21082456 | None:intergenic | 60.0% |
ATCAGCGGTGAGAGGGGGTG+TGG | - | chr2_1:21081511-21081530 | None:intergenic | 65.0% | |
!! | GATAGGTGTTGGGGACGGCG+AGG | - | chr2_1:21081560-21081579 | None:intergenic | 65.0% |
CGGAGGGGGAGAGGTTATGG+AGG | - | chr2_1:21081599-21081618 | None:intergenic | 65.0% | |
GAGCGGAGGGGGAGAGGTTA+TGG | - | chr2_1:21081602-21081621 | None:intergenic | 65.0% | |
GATGTCAGCGAGAGCGGAGG+GGG | - | chr2_1:21081613-21081632 | None:intergenic | 65.0% | |
GGATGTCAGCGAGAGCGGAG+GGG | - | chr2_1:21081614-21081633 | None:intergenic | 65.0% | |
GAGGATGTCAGCGAGAGCGG+AGG | - | chr2_1:21081616-21081635 | None:intergenic | 65.0% | |
GCGGAGGATGTCAGCGAGAG+CGG | - | chr2_1:21081619-21081638 | None:intergenic | 65.0% | |
!! | GGAGGAGGATGTGGTAGCGG+AGG | - | chr2_1:21081635-21081654 | None:intergenic | 65.0% |
CGGACCAGGAGAGGAACTGG+AGG | - | chr2_1:21081653-21081672 | None:intergenic | 65.0% | |
GGTCGGACCAGGAGAGGAAC+TGG | - | chr2_1:21081656-21081675 | None:intergenic | 65.0% | |
GTTGGAGGTCGGACCAGGAG+AGG | - | chr2_1:21081662-21081681 | None:intergenic | 65.0% | |
!! | GAGGTGTTGGAGGTCGGACC+AGG | - | chr2_1:21081667-21081686 | None:intergenic | 65.0% |
!! | GGGAGGGAGGTGTTGGAGGT+CGG | - | chr2_1:21081673-21081692 | None:intergenic | 65.0% |
CTCCAACACCTCCCTCCCTC+CGG | + | chr2_1:21081675-21081694 | Msa0200770:CDS | 65.0% | |
! | TACCGGAGGGAGGGAGGTGT+TGG | - | chr2_1:21081680-21081699 | None:intergenic | 65.0% |
CGAGTTTACCGGAGGGAGGG+AGG | - | chr2_1:21081686-21081705 | None:intergenic | 65.0% | |
GGCCGGGCCACCAACAACTT+TGG | + | chr2_1:21081729-21081748 | Msa0200770:CDS | 65.0% | |
!! | CGGCGAAAGCATCGTCGACG+GGG | - | chr2_1:21082076-21082095 | None:intergenic | 65.0% |
GCGACGGAAGCTATGGGTGC+TGG | + | chr2_1:21082230-21082249 | Msa0200770:CDS | 65.0% | |
!! | GGAGGAGCACTACTGTCCGG+TGG | - | chr2_1:21082434-21082453 | None:intergenic | 65.0% |
! | GGATGCTGCTTCTTCGCCGG+CGG | + | chr2_1:21082463-21082482 | Msa0200770:CDS | 65.0% |
! | GATGCTGCTTCTTCGCCGGC+GGG | + | chr2_1:21082464-21082483 | Msa0200770:CDS | 65.0% |
!! | CGGAGGGAGGGAGGTGTTGG+AGG | - | chr2_1:21081677-21081696 | None:intergenic | 70.0% |
CAGCGAGAGCGGAGGGGGAG+AGG | - | chr2_1:21081608-21081627 | None:intergenic | 75.0% | |
TGGTGGCCCGGCCGGTGGTT+TGG | - | chr2_1:21081722-21081741 | None:intergenic | 75.0% | |
!! | GTTGTTGGTGGCCCGGCCGG+TGG | - | chr2_1:21081727-21081746 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_1 | gene | 21081369 | 21083147 | 21081369 | ID=Msa0200770;Name=Msa0200770 |
chr2_1 | mRNA | 21081369 | 21083147 | 21081369 | ID=Msa0200770-mRNA-1;Parent=Msa0200770;Name=Msa0200770-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|2|0|433 |
chr2_1 | exon | 21081369 | 21082573 | 21081369 | ID=Msa0200770-mRNA-1:exon:8594;Parent=Msa0200770-mRNA-1 |
chr2_1 | exon | 21083051 | 21083147 | 21083051 | ID=Msa0200770-mRNA-1:exon:8595;Parent=Msa0200770-mRNA-1 |
chr2_1 | CDS | 21081369 | 21082573 | 21081369 | ID=Msa0200770-mRNA-1:cds;Parent=Msa0200770-mRNA-1 |
chr2_1 | CDS | 21083051 | 21083147 | 21083051 | ID=Msa0200770-mRNA-1:cds;Parent=Msa0200770-mRNA-1 |
Gene Sequence |
Protein sequence |