AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1089320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1089320 MtrunA17_Chr2g0329821 99.600 250 1 0 1 250 1 250 0.0 514
Msa1089320 MtrunA17_Chr8g0343441 80.081 246 48 1 6 250 10 255 1.12e-123 352
Msa1089320 MtrunA17_Chr2g0300241 72.177 248 58 5 6 250 13 252 1.13e-113 326
Msa1089320 MtrunA17_Chr4g0076771 67.857 252 76 1 1 247 1 252 1.37e-111 321
Msa1089320 MtrunA17_Chr1g0150821 68.775 253 70 3 6 250 11 262 2.02e-108 313
Msa1089320 MtrunA17_Chr4g0006381 61.600 250 85 5 1 250 3 241 1.49e-91 270
Msa1089320 MtrunA17_Chr7g0242511 58.607 244 91 4 1 244 3 236 2.30e-86 256
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1089320 AT3G42790.1 72.653 245 61 3 6 250 11 249 2.46e-118 338
Msa1089320 AT5G20510.1 69.200 250 71 2 6 250 11 259 1.37e-113 327
Msa1089320 AT1G14510.1 67.755 245 76 3 6 250 10 251 7.18e-106 306
Msa1089320 AT2G02470.1 68.340 259 69 6 1 250 1 255 6.79e-105 304
Msa1089320 AT2G02470.2 68.504 254 68 6 1 250 1 246 4.83e-103 299
Msa1089320 AT5G26210.1 70.732 246 70 2 6 250 10 254 1.98e-93 275
Msa1089320 AT5G20510.2 68.519 216 62 2 40 250 4 218 5.28e-92 270
Msa1089320 AT5G05610.2 60.331 242 84 5 6 247 9 238 3.61e-88 261
Msa1089320 AT5G05610.1 60.331 242 84 5 6 247 9 238 3.61e-88 261
Msa1089320 AT3G11200.1 61.570 242 84 5 6 247 11 243 9.78e-86 255
Msa1089320 AT5G20510.3 74.194 155 40 0 6 160 11 165 1.02e-75 228
Msa1089320 AT3G11200.2 61.538 208 71 5 40 247 32 230 4.83e-72 220
Msa1089320 AT2G02470.3 72.785 158 38 2 1 154 1 157 1.04e-66 207

Find 93 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTCTTCCTCCTCATCTTT+TGG 0.240666 7_3:+2660229 None:intergenic
GGTTGTCTGCTCTGAGCTTC+AGG 0.243347 7_3:+2660268 None:intergenic
AAAACGATGTCGTTTGGATT+AGG 0.261991 7_3:+2663484 None:intergenic
TTCTACTTTGGAGCCAGATT+TGG 0.290182 7_3:-2662348 Msa1089320:CDS
GATTCAATGGGTTATGGTTA+AGG 0.299628 7_3:+2663428 None:intergenic
ACGGATTGCTTAATGAGAAT+TGG 0.301755 7_3:-2662515 Msa1089320:CDS
CATTGTTCAATTCGATTCAA+TGG 0.307254 7_3:+2663415 None:intergenic
AAGGAGAATTTGTGCTTATA+CGG 0.310260 7_3:-2662534 Msa1089320:CDS
CAAAATGTCATTCCTTCATT+TGG 0.312555 7_3:+2659753 None:intergenic
AAACGATGTCGTTTGGATTA+GGG 0.318784 7_3:+2663485 None:intergenic
AATCACATACAAAACTTTGT+TGG 0.336175 7_3:-2659995 Msa1089320:three_prime_UTR
AACAGGGCGAAGCCACTTGC+GGG 0.339120 7_3:-2660186 Msa1089320:CDS
CAATTCGATTCAATGGGTTA+TGG 0.346327 7_3:+2663422 None:intergenic
TTTGGCTGTAATGCCGCTTT+TGG 0.349429 7_3:+2660247 None:intergenic
GTAACGGGGCTGATGAGTTC+TGG 0.350703 7_3:-2660150 Msa1089320:CDS
TGCTGGGTATCAACTTTGCC+AGG 0.351612 7_3:-2662443 Msa1089320:CDS
CTTTGATGATTCCAGTTCTT+CGG 0.353581 7_3:+2663345 None:intergenic
AAGAAATTATACCGACGGTT+AGG 0.356361 7_3:+2663321 None:intergenic
ATTATTTACCGCTTTAGAAC+TGG 0.360765 7_3:+2661522 None:intergenic
GGGCTTGTGGTGATAGTAAC+GGG 0.362851 7_3:-2660165 Msa1089320:CDS
ATTCAATGGGTTATGGTTAA+GGG 0.365057 7_3:+2663429 None:intergenic
CATTTCTTGCACTGCGAGAT+AGG 0.367114 7_3:-2663517 Msa1089320:five_prime_UTR
AGAGATTCCTGAGCCTGTGC+TGG 0.371017 7_3:-2662460 Msa1089320:CDS
GATTTCAAGAGCCGAAGAAC+TGG 0.371977 7_3:-2663356 Msa1089320:CDS
ACAGTATTTGAAGTTGTAAC+TGG 0.378246 7_3:-2661610 Msa1089320:CDS
AGATTGAAAACGATGTCGTT+TGG 0.383693 7_3:+2663478 None:intergenic
CTTTCCCTTGCATTCTACTT+TGG 0.386606 7_3:-2662360 Msa1089320:CDS
CGGATTGCTTAATGAGAATT+GGG 0.394937 7_3:-2662514 Msa1089320:CDS
TTTCTCTTGCATTCCATCCC+TGG 0.397443 7_3:+2662425 None:intergenic
AGAGCAGGATGATGATGAAC+AGG 0.397479 7_3:-2660203 Msa1089320:CDS
TTCGAGGTAGTGCTTGTTTG+TGG 0.407783 7_3:+2663642 None:intergenic
AGCTTTATCAAATCCAAATC+TGG 0.410286 7_3:+2662335 None:intergenic
TTTATATTTACGCAAGGATT+GGG 0.413551 7_3:+2663667 None:intergenic
AGCACAGGCTCAGGAATCTC+TGG 0.425752 7_3:+2662462 None:intergenic
AAAAGATGAGGAGGAAGAAC+TGG 0.426868 7_3:-2660227 Msa1089320:CDS
TTTATGAAGTTTGAGACATA+GGG 0.431717 7_3:-2659916 Msa1089320:three_prime_UTR
TCTTGTTACTGCTGCATGAT+GGG 0.433135 7_3:+2660038 None:intergenic
TCTGGAGGAACTTCTTCAAC+AGG 0.445499 7_3:+2662480 None:intergenic
CAGTGGCCACCTTAGTGTTA+TGG 0.446538 7_3:-2659801 Msa1089320:three_prime_UTR
AGAAAGAAAAGCATATTAAC+CGG 0.449243 7_3:+2659959 None:intergenic
ATTGTTCAATTCGATTCAAT+GGG 0.450426 7_3:+2663416 None:intergenic
AGAAATTATACCGACGGTTA+GGG 0.452362 7_3:+2663322 None:intergenic
GGAGGAAGAACTGGAAGAGC+AGG 0.470600 7_3:-2660218 Msa1089320:CDS
ACGACATTTGCACCAAATGA+AGG 0.471559 7_3:-2659765 Msa1089320:three_prime_UTR
CCAGAACTAAAGAAAAGACT+TGG 0.475902 7_3:+2659825 None:intergenic
CATTAATTTCCATAACACTA+AGG 0.480224 7_3:+2659792 None:intergenic
CTCTTGTTACTGCTGCATGA+TGG 0.480424 7_3:+2660037 None:intergenic
TGTTGGAGTCTTCACTGATC+CGG 0.484963 7_3:-2659978 Msa1089320:three_prime_UTR
TTCTACAGACAATGTGATCC+TGG 0.488698 7_3:-2663135 Msa1089320:intron
TTGATACCCAGCACAGGCTC+AGG 0.497706 7_3:+2662453 None:intergenic
ATCACTGTGAACAGCAACTA+AGG 0.498800 7_3:+2662392 None:intergenic
TTGCTGTTCACAGTGATACA+TGG 0.507689 7_3:-2662386 Msa1089320:CDS
GTAGTTGAAACATTGTTGAC+TGG 0.509936 7_3:-2659855 Msa1089320:three_prime_UTR
ATCTGCGAGAAGTGGTTCCA+TGG 0.517485 7_3:-2660115 Msa1089320:CDS
GGTATCAACTTTGCCAGGGA+TGG 0.520071 7_3:-2662438 Msa1089320:CDS
GAGATTCCTGAGCCTGTGCT+GGG 0.523852 7_3:-2662459 Msa1089320:CDS
TTTCTTTCTAGACGCATTGG+TGG 0.530027 7_3:-2659945 Msa1089320:three_prime_UTR
ATGGAATGCAAGAGAAAGAC+TGG 0.533268 7_3:-2662419 Msa1089320:CDS
GAAGCCACTTGCGGGGCTTG+TGG 0.543776 7_3:-2660178 Msa1089320:CDS
TTGATATGCTCAGCACGAGC+AGG 0.552258 7_3:+2660073 None:intergenic
GAATCGAATTGAACAATGGA+AGG 0.552287 7_3:-2663410 Msa1089320:exon
TTGGATTTGATAAAGCTGAC+AGG 0.552742 7_3:-2662329 Msa1089320:intron
GGGGCTTGTGGTGATAGTAA+CGG 0.558893 7_3:-2660166 Msa1089320:CDS
GTTACAACTTCAAATACTGT+TGG 0.565683 7_3:+2661613 None:intergenic
GCTGCGACATCTGCGAGAAG+TGG 0.566172 7_3:-2660123 Msa1089320:CDS
GAACAGGGCGAAGCCACTTG+CGG 0.571946 7_3:-2660187 Msa1089320:CDS
TGGCTCCAAAGTAGAATGCA+AGG 0.572860 7_3:+2662355 None:intergenic
TAGTTGAAACATTGTTGACT+GGG 0.579913 7_3:-2659854 Msa1089320:three_prime_UTR
ATCTAAGTCCAGTTCTAAAG+CGG 0.587642 7_3:-2661530 Msa1089320:intron
CATAACACTAAGGTGGCCAC+TGG 0.593168 7_3:+2659802 None:intergenic
AGTCAACAATGTTTCAACTA+CGG 0.597010 7_3:+2659857 None:intergenic
ATCACCACAAGCCCCGCAAG+TGG 0.598002 7_3:+2660174 None:intergenic
TCAGAGCAGACAACCAAAAG+CGG 0.606960 7_3:-2660260 Msa1089320:CDS
CAGAACTAAAGAAAAGACTT+GGG 0.612076 7_3:+2659826 None:intergenic
ATCAGATTATGATGACGTGA+TGG 0.614427 7_3:+2663718 None:intergenic
CATTGAATCGAATTGAACAA+TGG 0.620243 7_3:-2663414 Msa1089320:exon
GCTGGGTATCAACTTTGCCA+GGG 0.620748 7_3:-2662442 Msa1089320:CDS
TTATGAAGTTTGAGACATAG+GGG 0.621103 7_3:-2659915 Msa1089320:three_prime_UTR
TCATAATCTGATTATTACAG+TGG 0.623153 7_3:-2663707 Msa1089320:five_prime_UTR
TAATTTCCATAACACTAAGG+TGG 0.623750 7_3:+2659795 None:intergenic
GCAAAGTTGATACCCAGCAC+AGG 0.629760 7_3:+2662447 None:intergenic
ATCATCAAAGCCCTAACCGT+CGG 0.634254 7_3:-2663332 Msa1089320:intron
GATTATGATGACGTGATGGA+CGG 0.635988 7_3:+2663722 None:intergenic
GGCATTACAGCCAAAAGATG+AGG 0.636479 7_3:-2660239 Msa1089320:CDS
GGCTCCAAAGTAGAATGCAA+GGG 0.639786 7_3:+2662356 None:intergenic
ACAGGGCGAAGCCACTTGCG+GGG 0.643480 7_3:-2660185 Msa1089320:CDS
ACAGGCTCAGGAATCTCTGG+AGG 0.651339 7_3:+2662465 None:intergenic
ATTACAGCCAAAAGATGAGG+AGG 0.661732 7_3:-2660236 Msa1089320:CDS
GAGCAGGATGATGATGAACA+GGG 0.682274 7_3:-2660202 Msa1089320:CDS
GGCTTGTGGTGATAGTAACG+GGG 0.707309 7_3:-2660164 Msa1089320:CDS
AACAAAACAAGACACAACGC+AGG 0.709831 7_3:+2663613 None:intergenic
TCTTCAGTCTCAAACAACAG+TGG 0.724521 7_3:-2661559 Msa1089320:CDS
TACAGTGGAAGCGAACACAG+AGG 0.787896 7_3:-2663692 Msa1089320:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAAATACAACTATTTTAA+GGG + chr7_3:2660899-2660918 None:intergenic 10.0%
!!! AAATAAATACAACTATTTTA+AGG + chr7_3:2660900-2660919 None:intergenic 10.0%
!! ATAAAGAAAATGATATTATT+AGG + chr7_3:2662816-2662835 None:intergenic 10.0%
!!! TTCAATCTTTTTCAAAATTT+TGG - chr7_3:2660195-2660214 Msa1089320:CDS 15.0%
!! TAAATAAAATTCAAAAACCT+TGG + chr7_3:2660283-2660302 None:intergenic 15.0%
!!! TTTTATTTTCCATCAATTTT+AGG - chr7_3:2660450-2660469 Msa1089320:intron 15.0%
!!! TTTATTTTCCATCAATTTTA+GGG - chr7_3:2660451-2660470 Msa1089320:intron 15.0%
!!! AAATGCCTTAATTTTAAAAA+GGG + chr7_3:2662297-2662316 None:intergenic 15.0%
!!! AAAATGCCTTAATTTTAAAA+AGG + chr7_3:2662298-2662317 None:intergenic 15.0%
!! ATTTGTGAATAAAAAAGTAA+AGG - chr7_3:2662349-2662368 Msa1089320:CDS 15.0%
!! AAATAAATAAGTTAACAATG+TGG - chr7_3:2662476-2662495 Msa1089320:CDS 15.0%
!!! TTTATTGTCATTTTGAATTT+CGG - chr7_3:2662831-2662850 Msa1089320:intron 15.0%
!! GTATATAAACATAACTTATT+TGG + chr7_3:2663084-2663103 None:intergenic 15.0%
!!! ATCATCAAAAATTTGTTCAA+CGG + chr7_3:2660119-2660138 None:intergenic 20.0%
!!! TTTTTCAAAATTTTGGCAAA+AGG - chr7_3:2660202-2660221 Msa1089320:CDS 20.0%
!!! TTTTCAAAATTTTGGCAAAA+GGG - chr7_3:2660203-2660222 Msa1089320:CDS 20.0%
!!! TTTCATTAAATTTTCTACCA+AGG - chr7_3:2660263-2660282 Msa1089320:CDS 20.0%
!!! ATAAAAGAGCATTCAAATAT+CGG + chr7_3:2660436-2660455 None:intergenic 20.0%
!! TGATAATTCATTGTTCTTTA+TGG - chr7_3:2660535-2660554 Msa1089320:intron 20.0%
!! AGATAAAAATAGTTATGCTT+CGG + chr7_3:2661199-2661218 None:intergenic 20.0%
!! AGAAAAATCTTATTCAACAA+GGG + chr7_3:2661336-2661355 None:intergenic 20.0%
!! AAGAAAAATCTTATTCAACA+AGG + chr7_3:2661337-2661356 None:intergenic 20.0%
!!! CGCTATTATTATTTTAAACA+GGG + chr7_3:2662109-2662128 None:intergenic 20.0%
!!! TCGCTATTATTATTTTAAAC+AGG + chr7_3:2662110-2662129 None:intergenic 20.0%
!! TCTATTGTTTATCCTATAAT+GGG - chr7_3:2662189-2662208 Msa1089320:intron 20.0%
!!! AGAATCCCTTTTTAAAATTA+AGG - chr7_3:2662289-2662308 Msa1089320:intron 20.0%
!!! AAATTAAGGCATTTTTCAAA+TGG - chr7_3:2662303-2662322 Msa1089320:intron 20.0%
!!! TTTTTTTGCAATAAACAACA+AGG + chr7_3:2662454-2662473 None:intergenic 20.0%
!!! TTATTGTCATTTTGAATTTC+GGG - chr7_3:2662832-2662851 Msa1089320:intron 20.0%
!! AAGTATACATATCATTAACA+GGG + chr7_3:2662918-2662937 None:intergenic 20.0%
!! TATCTAATTGATATCTTGTT+TGG - chr7_3:2663136-2663155 Msa1089320:CDS 20.0%
!!! ATCTAATTGATATCTTGTTT+GGG - chr7_3:2663137-2663156 Msa1089320:CDS 20.0%
!! TTAACAATTAGATAAGAACA+CGG + chr7_3:2663186-2663205 None:intergenic 20.0%
! TCATAATCTGATTATTACAG+TGG - chr7_3:2659785-2659804 Msa1089320:three_prime_UTR 25.0%
! TTTATATTTACGCAAGGATT+GGG + chr7_3:2659828-2659847 None:intergenic 25.0%
!! TTTTATATTTACGCAAGGAT+TGG + chr7_3:2659829-2659848 None:intergenic 25.0%
! ATTGTTCAATTCGATTCAAT+GGG + chr7_3:2660079-2660098 None:intergenic 25.0%
! TATTCTTGCACTAAAATGTT+TGG - chr7_3:2660301-2660320 Msa1089320:intron 25.0%
! ACATTGAAATTAAACTAACC+AGG + chr7_3:2660378-2660397 None:intergenic 25.0%
! TAATTGAACCCTAAAATTGA+TGG + chr7_3:2660462-2660481 None:intergenic 25.0%
! ATTGACTGATAAATAAAAGG+CGG + chr7_3:2660603-2660622 None:intergenic 25.0%
!!! CTTTTATTTATCAGTCAATG+CGG - chr7_3:2660604-2660623 Msa1089320:intron 25.0%
!!! TAAGCTATTTCTAAGGAAAA+TGG + chr7_3:2660801-2660820 None:intergenic 25.0%
!!! AATAATTTGCTTATCCAAAC+AGG - chr7_3:2660873-2660892 Msa1089320:intron 25.0%
! GATAAAAATAGTTATGCTTC+GGG + chr7_3:2661198-2661217 None:intergenic 25.0%
! GCAAATAAAATTGCAAATCA+AGG + chr7_3:2661410-2661429 None:intergenic 25.0%
! TTGCTTATAAATCATTGTTG+AGG - chr7_3:2661426-2661445 Msa1089320:intron 25.0%
!!! ATACCATTTTTTCCTGAAAA+AGG - chr7_3:2661495-2661514 Msa1089320:intron 25.0%
!!! TACCATTTTTTCCTGAAAAA+GGG - chr7_3:2661496-2661515 Msa1089320:intron 25.0%
! TAAAGAAAAAACCACTTGAT+AGG + chr7_3:2661700-2661719 None:intergenic 25.0%
!! AATCATCTGTGTATTTGTTT+TGG - chr7_3:2661754-2661773 Msa1089320:intron 25.0%
! GTCTATTGTTTATCCTATAA+TGG - chr7_3:2662188-2662207 Msa1089320:intron 25.0%
!! AAAGGAACAACTAGTTTAAT+TGG - chr7_3:2662367-2662386 Msa1089320:CDS 25.0%
!! ACTAAAGAATCGTTTCATTT+TGG + chr7_3:2662408-2662427 None:intergenic 25.0%
! TTGTCTCCTTCTTTATTAAT+CGG - chr7_3:2662534-2662553 Msa1089320:CDS 25.0%
! GTGAAGTATGATGAATATAT+TGG - chr7_3:2662667-2662686 Msa1089320:intron 25.0%
! GAATTTGGACTGAATATTTA+TGG - chr7_3:2662731-2662750 Msa1089320:intron 25.0%
! CAAGTATACATATCATTAAC+AGG + chr7_3:2662919-2662938 None:intergenic 25.0%
! CTGTTAATGATATGTATACT+TGG - chr7_3:2662917-2662936 Msa1089320:intron 25.0%
! TAATGATATGTATACTTGGT+TGG - chr7_3:2662921-2662940 Msa1089320:intron 25.0%
! TATCTCTCATCATTATTAAG+CGG + chr7_3:2663029-2663048 None:intergenic 25.0%
! AAACATAACTTATTTGGAAG+TGG + chr7_3:2663078-2663097 None:intergenic 25.0%
! AATCACATACAAAACTTTGT+TGG - chr7_3:2663497-2663516 Msa1089320:five_prime_UTR 25.0%
!! AGAAAGAAAAGCATATTAAC+CGG + chr7_3:2663536-2663555 None:intergenic 25.0%
!!! TTTTATGAAGTTTGAGACAT+AGG - chr7_3:2663575-2663594 Msa1089320:five_prime_UTR 25.0%
!! TTTATGAAGTTTGAGACATA+GGG - chr7_3:2663576-2663595 Msa1089320:five_prime_UTR 25.0%
! CATTAATTTCCATAACACTA+AGG + chr7_3:2663703-2663722 None:intergenic 25.0%
! GTGGATTTTATATTTACGCA+AGG + chr7_3:2659834-2659853 None:intergenic 30.0%
!! ATTCAATGGGTTATGGTTAA+GGG + chr7_3:2660066-2660085 None:intergenic 30.0%
CATTGTTCAATTCGATTCAA+TGG + chr7_3:2660080-2660099 None:intergenic 30.0%
CATTGAATCGAATTGAACAA+TGG - chr7_3:2660078-2660097 Msa1089320:CDS 30.0%
TGAACAAGAAATTATACCGA+CGG + chr7_3:2660179-2660198 None:intergenic 30.0%
CAAAATTTGTAGATCAAGCA+AGG + chr7_3:2660239-2660258 None:intergenic 30.0%
! CTTGCTTGATCTACAAATTT+TGG - chr7_3:2660237-2660256 Msa1089320:CDS 30.0%
AGGGTTCAATTATTTGCAAT+TGG - chr7_3:2660470-2660489 Msa1089320:intron 30.0%
!! CGCATTGACTGATAAATAAA+AGG + chr7_3:2660606-2660625 None:intergenic 30.0%
! TGCGACAAATTTTGCATTAT+AGG + chr7_3:2660637-2660656 None:intergenic 30.0%
TTGTCGCATTTCTATGATTT+AGG - chr7_3:2660649-2660668 Msa1089320:intron 30.0%
!! ATAAGTTTTGTGAGACTGTT+TGG - chr7_3:2660710-2660729 Msa1089320:intron 30.0%
!! TAAGTTTTGTGAGACTGTTT+GGG - chr7_3:2660711-2660730 Msa1089320:intron 30.0%
!! GCTTACATAAGCTATTTCTA+AGG + chr7_3:2660808-2660827 None:intergenic 30.0%
CTGTTGTATTCTTTCAGAAA+AGG - chr7_3:2660939-2660958 Msa1089320:intron 30.0%
AAGGAGAATTTGTGCTTATA+CGG - chr7_3:2660958-2660977 Msa1089320:intron 30.0%
! AGCTTTATCAAATCCAAATC+TGG + chr7_3:2661160-2661179 None:intergenic 30.0%
ACTCGTGAAAAAGTTATATC+AGG - chr7_3:2661226-2661245 Msa1089320:intron 30.0%
ATATCAGGATGAGTATGTTA+AGG - chr7_3:2661241-2661260 Msa1089320:intron 30.0%
!!! ACCATTTTTTCCTGAAAAAG+GGG - chr7_3:2661497-2661516 Msa1089320:intron 30.0%
!!! TGTTTTAAGATAGTGCAAGA+AGG - chr7_3:2661631-2661650 Msa1089320:CDS 30.0%
AATTGAAGATTCCTATCAAG+TGG - chr7_3:2661686-2661705 Msa1089320:intron 30.0%
GTTACAACTTCAAATACTGT+TGG + chr7_3:2661882-2661901 None:intergenic 30.0%
! ACAGTATTTGAAGTTGTAAC+TGG - chr7_3:2661882-2661901 Msa1089320:intron 30.0%
!! ATTATTTACCGCTTTAGAAC+TGG + chr7_3:2661973-2661992 None:intergenic 30.0%
TTCAAGTGTAGACTGTATAT+AGG - chr7_3:2662265-2662284 Msa1089320:intron 30.0%
! TTAATTGGTTTCTTTGAGCA+AGG - chr7_3:2662382-2662401 Msa1089320:CDS 30.0%
TAGACTCCGATTAATAAAGA+AGG + chr7_3:2662543-2662562 None:intergenic 30.0%
! AATCGGAGTCTAAAATACTT+TGG - chr7_3:2662551-2662570 Msa1089320:intron 30.0%
!!! TTTGGTGTTTCGTTACATTT+TGG - chr7_3:2662569-2662588 Msa1089320:intron 30.0%
!! TTGGTGTTTCGTTACATTTT+GGG - chr7_3:2662570-2662589 Msa1089320:intron 30.0%
! TGTACTTGTATGATGGAATT+TGG - chr7_3:2662716-2662735 Msa1089320:intron 30.0%
AAGGTATGCAGAAATAAAAG+AGG - chr7_3:2662778-2662797 Msa1089320:intron 30.0%
TATACATATCATTAACAGGG+TGG + chr7_3:2662915-2662934 None:intergenic 30.0%
TATGTATACTTGGTTGGAAA+TGG - chr7_3:2662927-2662946 Msa1089320:intron 30.0%
AGTTTCCACTAACTATGATA+TGG - chr7_3:2663001-2663020 Msa1089320:intron 30.0%
ACTTTCAATGCAAAATTGTG+TGG - chr7_3:2663102-2663121 Msa1089320:intron 30.0%
! TTATGAAGTTTGAGACATAG+GGG - chr7_3:2663577-2663596 Msa1089320:five_prime_UTR 30.0%
AGTCAACAATGTTTCAACTA+CGG + chr7_3:2663638-2663657 None:intergenic 30.0%
! TAGTTGAAACATTGTTGACT+GGG - chr7_3:2663638-2663657 Msa1089320:five_prime_UTR 30.0%
CAGAACTAAAGAAAAGACTT+GGG + chr7_3:2663669-2663688 None:intergenic 30.0%
TAATTTCCATAACACTAAGG+TGG + chr7_3:2663700-2663719 None:intergenic 30.0%
CAAAATGTCATTCCTTCATT+TGG + chr7_3:2663742-2663761 None:intergenic 30.0%
! ATCAGATTATGATGACGTGA+TGG + chr7_3:2659777-2659796 None:intergenic 35.0%
! AAACGATGTCGTTTGGATTA+GGG + chr7_3:2660010-2660029 None:intergenic 35.0%
! AAAACGATGTCGTTTGGATT+AGG + chr7_3:2660011-2660030 None:intergenic 35.0%
AGATTGAAAACGATGTCGTT+TGG + chr7_3:2660017-2660036 None:intergenic 35.0%
!! GATTCAATGGGTTATGGTTA+AGG + chr7_3:2660067-2660086 None:intergenic 35.0%
!! CAATTCGATTCAATGGGTTA+TGG + chr7_3:2660073-2660092 None:intergenic 35.0%
GAATCGAATTGAACAATGGA+AGG - chr7_3:2660082-2660101 Msa1089320:CDS 35.0%
! CTTTGATGATTCCAGTTCTT+CGG + chr7_3:2660150-2660169 None:intergenic 35.0%
AGAAATTATACCGACGGTTA+GGG + chr7_3:2660173-2660192 None:intergenic 35.0%
AAGAAATTATACCGACGGTT+AGG + chr7_3:2660174-2660193 None:intergenic 35.0%
!! CTTGTAGCTTTGAATTCTGA+TGG - chr7_3:2660563-2660582 Msa1089320:intron 35.0%
! TCTATGATTTAGGACCTGTT+TGG - chr7_3:2660659-2660678 Msa1089320:intron 35.0%
TCAAATAAGCCAATCCAAAC+AGG + chr7_3:2660676-2660695 None:intergenic 35.0%
GCTTATTTGAGCTTATCTAC+TGG - chr7_3:2660686-2660705 Msa1089320:intron 35.0%
!! AACTATTTTAAGGGCCTGTT+TGG + chr7_3:2660890-2660909 None:intergenic 35.0%
! ACGGATTGCTTAATGAGAAT+TGG - chr7_3:2660977-2660996 Msa1089320:intron 35.0%
CGGATTGCTTAATGAGAATT+GGG - chr7_3:2660978-2660997 Msa1089320:intron 35.0%
TTGGATTTGATAAAGCTGAC+AGG - chr7_3:2661163-2661182 Msa1089320:intron 35.0%
AGTATGTTAAGGCAGTAGTT+TGG - chr7_3:2661252-2661271 Msa1089320:intron 35.0%
TTGTTTAGTCATCGTTGTGT+TGG - chr7_3:2661298-2661317 Msa1089320:intron 35.0%
GCTAGAAAGCAGTTATAAAG+TGG + chr7_3:2661382-2661401 None:intergenic 35.0%
!!! TCCCCTTTTTCAGGAAAAAA+TGG + chr7_3:2661501-2661520 None:intergenic 35.0%
ATAGTGCAAGAAGGAAAAGT+TGG - chr7_3:2661640-2661659 Msa1089320:CDS 35.0%
AATGGCAAATTAGGACAAGA+AGG + chr7_3:2661818-2661837 None:intergenic 35.0%
TGCATCACAAATGGCAAATT+AGG + chr7_3:2661827-2661846 None:intergenic 35.0%
! TAATTTGCCATTTGTGATGC+AGG - chr7_3:2661826-2661845 Msa1089320:intron 35.0%
!! ATCTAAGTCCAGTTCTAAAG+CGG - chr7_3:2661962-2661981 Msa1089320:intron 35.0%
TGAATCGCAGTGTAAAACTT+AGG - chr7_3:2662048-2662067 Msa1089320:intron 35.0%
TTCAAGTGTAGACTGTTCAT+AGG - chr7_3:2662077-2662096 Msa1089320:intron 35.0%
CATGGACAAAAGACAATACA+TGG + chr7_3:2662151-2662170 None:intergenic 35.0%
! CATGTATTGTCTTTTGTCCA+TGG - chr7_3:2662149-2662168 Msa1089320:intron 35.0%
CAATGCATGAAAGATAACCA+TGG + chr7_3:2662169-2662188 None:intergenic 35.0%
GTCTACACTTGAAAAACCAT+AGG + chr7_3:2662258-2662277 None:intergenic 35.0%
TGCAATAAACAACAAGGTCT+TGG + chr7_3:2662448-2662467 None:intergenic 35.0%
! TGGTGTTTCGTTACATTTTG+GGG - chr7_3:2662571-2662590 Msa1089320:intron 35.0%
!! TCGTTACATTTTGGGGATAA+TGG - chr7_3:2662578-2662597 Msa1089320:intron 35.0%
GAAGAACTTTACCTTAAGCT+TGG - chr7_3:2662600-2662619 Msa1089320:intron 35.0%
TTGCAGAATAACCAAGCTTA+AGG + chr7_3:2662614-2662633 None:intergenic 35.0%
! CAAGCTTTGTACTTGTATGA+TGG - chr7_3:2662709-2662728 Msa1089320:intron 35.0%
! CACTTGAATTGCTACTTGTA+AGG - chr7_3:2662759-2662778 Msa1089320:intron 35.0%
!! TGAATTTCGGGTTTAGAATG+TGG - chr7_3:2662844-2662863 Msa1089320:intron 35.0%
AGTTAGTGGAAACTTGTGAA+GGG + chr7_3:2662995-2663014 None:intergenic 35.0%
TAGTTAGTGGAAACTTGTGA+AGG + chr7_3:2662996-2663015 None:intergenic 35.0%
TCAATGCAAAATTGTGTGGA+AGG - chr7_3:2663106-2663125 Msa1089320:intron 35.0%
! TGATCTTCACACATTTTCCA+TGG + chr7_3:2663397-2663416 None:intergenic 35.0%
GTAGTTGAAACATTGTTGAC+TGG - chr7_3:2663637-2663656 Msa1089320:five_prime_UTR 35.0%
CCAGAACTAAAGAAAAGACT+TGG + chr7_3:2663670-2663689 None:intergenic 35.0%
!! CCAAGTCTTTTCTTTAGTTC+TGG - chr7_3:2663667-2663686 Msa1089320:five_prime_UTR 35.0%
! GATTATGATGACGTGATGGA+CGG + chr7_3:2659773-2659792 None:intergenic 40.0%
AACAAAACAAGACACAACGC+AGG + chr7_3:2659882-2659901 None:intergenic 40.0%
TTCTACAGACAATGTGATCC+TGG - chr7_3:2660357-2660376 Msa1089320:intron 40.0%
!! GTAGCTTTGAATTCTGATGG+AGG - chr7_3:2660566-2660585 Msa1089320:intron 40.0%
! GATTTAGGACCTGTTTGGAT+TGG - chr7_3:2660664-2660683 Msa1089320:intron 40.0%
ATGGAATGCAAGAGAAAGAC+TGG - chr7_3:2661073-2661092 Msa1089320:intron 40.0%
ATCACTGTGAACAGCAACTA+AGG + chr7_3:2661103-2661122 None:intergenic 40.0%
! TTGCTGTTCACAGTGATACA+TGG - chr7_3:2661106-2661125 Msa1089320:intron 40.0%
CTTTCCCTTGCATTCTACTT+TGG - chr7_3:2661132-2661151 Msa1089320:intron 40.0%
!! TTCTACTTTGGAGCCAGATT+TGG - chr7_3:2661144-2661163 Msa1089320:intron 40.0%
TGATGTGACTAAGAGGTCAT+AGG + chr7_3:2661566-2661585 None:intergenic 40.0%
! AGCCACAATTGATGCTCTTT+TGG - chr7_3:2661722-2661741 Msa1089320:intron 40.0%
!! GACCAAAAGAGCATCAATTG+TGG + chr7_3:2661727-2661746 None:intergenic 40.0%
TCTTCAGTCTCAAACAACAG+TGG - chr7_3:2661933-2661952 Msa1089320:intron 40.0%
CAATACATGGAGAGTTTGTC+AGG + chr7_3:2662138-2662157 None:intergenic 40.0%
CACAGACTAAACAATCTGCA+TGG + chr7_3:2662221-2662240 None:intergenic 40.0%
TGTTCTCATCTATCTGCCTA+TGG - chr7_3:2662239-2662258 Msa1089320:intron 40.0%
AAACAACAAGGTCTTGGATG+AGG + chr7_3:2662442-2662461 None:intergenic 40.0%
! GCACAAGTTTTCAACATGAG+AGG - chr7_3:2663050-2663069 Msa1089320:intron 40.0%
ATTACAGCCAAAAGATGAGG+AGG - chr7_3:2663256-2663275 Msa1089320:intron 40.0%
! AGTTCTTCCTCCTCATCTTT+TGG + chr7_3:2663266-2663285 None:intergenic 40.0%
AAAAGATGAGGAGGAAGAAC+TGG - chr7_3:2663265-2663284 Msa1089320:intron 40.0%
TCTTGTTACTGCTGCATGAT+GGG + chr7_3:2663457-2663476 None:intergenic 40.0%
! GCTTTTCTTTCTAGACGCAT+TGG - chr7_3:2663544-2663563 Msa1089320:five_prime_UTR 40.0%
TTTCTTTCTAGACGCATTGG+TGG - chr7_3:2663547-2663566 Msa1089320:five_prime_UTR 40.0%
!!! TTTTCTTTAGTTCTGGCCAG+TGG - chr7_3:2663674-2663693 Msa1089320:five_prime_UTR 40.0%
ACGACATTTGCACCAAATGA+AGG - chr7_3:2663727-2663746 Msa1089320:five_prime_UTR 40.0%
TTCGAGGTAGTGCTTGTTTG+TGG + chr7_3:2659853-2659872 None:intergenic 45.0%
! ACAACGCAGGTTTTTCTTCG+AGG + chr7_3:2659869-2659888 None:intergenic 45.0%
CATTTCTTGCACTGCGAGAT+AGG - chr7_3:2659975-2659994 Msa1089320:three_prime_UTR 45.0%
GATTTCAAGAGCCGAAGAAC+TGG - chr7_3:2660136-2660155 Msa1089320:CDS 45.0%
ATCATCAAAGCCCTAACCGT+CGG - chr7_3:2660160-2660179 Msa1089320:CDS 45.0%
TCTGGAGGAACTTCTTCAAC+AGG + chr7_3:2661015-2661034 None:intergenic 45.0%
TTTCTCTTGCATTCCATCCC+TGG + chr7_3:2661070-2661089 None:intergenic 45.0%
GGCTCCAAAGTAGAATGCAA+GGG + chr7_3:2661139-2661158 None:intergenic 45.0%
TGGCTCCAAAGTAGAATGCA+AGG + chr7_3:2661140-2661159 None:intergenic 45.0%
GTTGAGGCAGTATTCCAACA+CGG - chr7_3:2661442-2661461 Msa1089320:intron 45.0%
! AAGTAAGGCTCCCCTTTTTC+AGG + chr7_3:2661510-2661529 None:intergenic 45.0%
CCTCTTGCAGATGCAAAGTA+AGG + chr7_3:2661525-2661544 None:intergenic 45.0%
CCTTACTTTGCATCTGCAAG+AGG - chr7_3:2661522-2661541 Msa1089320:intron 45.0%
CCATGTGTGATGTGACTAAG+AGG + chr7_3:2661573-2661592 None:intergenic 45.0%
CCTCTTAGTCACATCACACA+TGG - chr7_3:2661570-2661589 Msa1089320:CDS 45.0%
CATGGCAGCATTTCTATAGC+AGG - chr7_3:2661588-2661607 Msa1089320:CDS 45.0%
GACGTTTCCTGCATCACAAA+TGG + chr7_3:2661836-2661855 None:intergenic 45.0%
!! GCATGGAGAGTACCCATTAT+AGG + chr7_3:2662204-2662223 None:intergenic 45.0%
GAAGGAGACAAGCTGTAAAC+TGG + chr7_3:2662525-2662544 None:intergenic 45.0%
TGGAAACTTGTGAAGGGAGA+TGG + chr7_3:2662989-2663008 None:intergenic 45.0%
!! CGGTGCCATATCATAGTTAG+TGG + chr7_3:2663009-2663028 None:intergenic 45.0%
TCAGAGCAGACAACCAAAAG+CGG - chr7_3:2663232-2663251 Msa1089320:intron 45.0%
!!! TTTGGCTGTAATGCCGCTTT+TGG + chr7_3:2663248-2663267 None:intergenic 45.0%
GGCATTACAGCCAAAAGATG+AGG - chr7_3:2663253-2663272 Msa1089320:intron 45.0%
! AGAGCAGGATGATGATGAAC+AGG - chr7_3:2663289-2663308 Msa1089320:intron 45.0%
! GAGCAGGATGATGATGAACA+GGG - chr7_3:2663290-2663309 Msa1089320:intron 45.0%
CTCTTGTTACTGCTGCATGA+TGG + chr7_3:2663458-2663477 None:intergenic 45.0%
TGTTGGAGTCTTCACTGATC+CGG - chr7_3:2663514-2663533 Msa1089320:five_prime_UTR 45.0%
TACAGTGGAAGCGAACACAG+AGG - chr7_3:2659800-2659819 Msa1089320:three_prime_UTR 50.0%
!! GCAAAGTTGATACCCAGCAC+AGG + chr7_3:2661048-2661067 None:intergenic 50.0%
TGCTGGGTATCAACTTTGCC+AGG - chr7_3:2661049-2661068 Msa1089320:intron 50.0%
GCTGGGTATCAACTTTGCCA+GGG - chr7_3:2661050-2661069 Msa1089320:intron 50.0%
GGTATCAACTTTGCCAGGGA+TGG - chr7_3:2661054-2661073 Msa1089320:intron 50.0%
GCAGTATTCCAACACGGAGA+CGG - chr7_3:2661448-2661467 Msa1089320:intron 50.0%
TTCAACATCCGTCTCCGTGT+TGG + chr7_3:2661459-2661478 None:intergenic 50.0%
GGGGCTTGTGGTGATAGTAA+CGG - chr7_3:2663326-2663345 Msa1089320:intron 50.0%
GGGCTTGTGGTGATAGTAAC+GGG - chr7_3:2663327-2663346 Msa1089320:intron 50.0%
GGCTTGTGGTGATAGTAACG+GGG - chr7_3:2663328-2663347 Msa1089320:intron 50.0%
ATCTGCGAGAAGTGGTTCCA+TGG - chr7_3:2663377-2663396 Msa1089320:CDS 50.0%
TTGATATGCTCAGCACGAGC+AGG + chr7_3:2663422-2663441 None:intergenic 50.0%
CATAACACTAAGGTGGCCAC+TGG + chr7_3:2663693-2663712 None:intergenic 50.0%
CAGTGGCCACCTTAGTGTTA+TGG - chr7_3:2663691-2663710 Msa1089320:five_prime_UTR 50.0%
ACAGGCTCAGGAATCTCTGG+AGG + chr7_3:2661030-2661049 None:intergenic 55.0%
AGCACAGGCTCAGGAATCTC+TGG + chr7_3:2661033-2661052 None:intergenic 55.0%
AGAGATTCCTGAGCCTGTGC+TGG - chr7_3:2661032-2661051 Msa1089320:intron 55.0%
GAGATTCCTGAGCCTGTGCT+GGG - chr7_3:2661033-2661052 Msa1089320:intron 55.0%
TTGATACCCAGCACAGGCTC+AGG + chr7_3:2661042-2661061 None:intergenic 55.0%
GAGGTCATAGGCTCAAGTCG+TGG + chr7_3:2661554-2661573 None:intergenic 55.0%
! GGTTGTCTGCTCTGAGCTTC+AGG + chr7_3:2663227-2663246 None:intergenic 55.0%
GGAGGAAGAACTGGAAGAGC+AGG - chr7_3:2663274-2663293 Msa1089320:intron 55.0%
! GTAACGGGGCTGATGAGTTC+TGG - chr7_3:2663342-2663361 Msa1089320:CDS 55.0%
GAACAGGGCGAAGCCACTTG+CGG - chr7_3:2663305-2663324 Msa1089320:intron 60.0%
AACAGGGCGAAGCCACTTGC+GGG - chr7_3:2663306-2663325 Msa1089320:intron 60.0%
ATCACCACAAGCCCCGCAAG+TGG + chr7_3:2663321-2663340 None:intergenic 60.0%
GCTGCGACATCTGCGAGAAG+TGG - chr7_3:2663369-2663388 Msa1089320:CDS 60.0%
ACAGGGCGAAGCCACTTGCG+GGG - chr7_3:2663307-2663326 Msa1089320:intron 65.0%
GAAGCCACTTGCGGGGCTTG+TGG - chr7_3:2663314-2663333 Msa1089320:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 2659750 2663764 2659750 ID=Msa1089320;Name=Msa1089320
chr7_3 mRNA 2659750 2663764 2659750 ID=Msa1089320-mRNA-1;Parent=Msa1089320;Name=Msa1089320-mRNA-1;_AED=0.14;_eAED=0.14;_QI=347|1|1|1|1|1|5|277|250
chr7_3 exon 2659750 2660296 2659750 ID=Msa1089320-mRNA-1:exon:1143;Parent=Msa1089320-mRNA-1
chr7_3 exon 2661531 2661666 2661531 ID=Msa1089320-mRNA-1:exon:1142;Parent=Msa1089320-mRNA-1
chr7_3 exon 2662330 2662558 2662330 ID=Msa1089320-mRNA-1:exon:1141;Parent=Msa1089320-mRNA-1
chr7_3 exon 2663136 2663168 2663136 ID=Msa1089320-mRNA-1:exon:1140;Parent=Msa1089320-mRNA-1
chr7_3 exon 2663333 2663764 2663333 ID=Msa1089320-mRNA-1:exon:1139;Parent=Msa1089320-mRNA-1
chr7_3 five_prime_UTR 2663418 2663764 2663418 ID=Msa1089320-mRNA-1:five_prime_utr;Parent=Msa1089320-mRNA-1
chr7_3 CDS 2663333 2663417 2663333 ID=Msa1089320-mRNA-1:cds;Parent=Msa1089320-mRNA-1
chr7_3 CDS 2663136 2663168 2663136 ID=Msa1089320-mRNA-1:cds;Parent=Msa1089320-mRNA-1
chr7_3 CDS 2662330 2662558 2662330 ID=Msa1089320-mRNA-1:cds;Parent=Msa1089320-mRNA-1
chr7_3 CDS 2661531 2661666 2661531 ID=Msa1089320-mRNA-1:cds;Parent=Msa1089320-mRNA-1
chr7_3 CDS 2660027 2660296 2660027 ID=Msa1089320-mRNA-1:cds;Parent=Msa1089320-mRNA-1
chr7_3 three_prime_UTR 2659750 2660026 2659750 ID=Msa1089320-mRNA-1:three_prime_utr;Parent=Msa1089320-mRNA-1
Gene Sequence

>Msa1089320

ATGGAAGGTCGAAGTCGCACCGTTGAACAAATTTTTGATGATTTCAAGAGCCGAAGAACTGGAATCATCAAAGCCCTAACCGTCGATGTTGAAGATTTCTACAGACAATGTGATCCTGAAAAGGAGAATTTGTGCTTATACGGATTGCTTAATGAGAATTGGGAAGTGAATTTACCTGTTGAAGAAGTTCCTCCAGAGATTCCTGAGCCTGTGCTGGGTATCAACTTTGCCAGGGATGGAATGCAAGAGAAAGACTGGTTAGCCTTAGTTGCTGTTCACAGTGATACATGGTTACTTTCCCTTGCATTCTACTTTGGAGCCAGATTTGGATTTGATAAAGCTGACAGGAAACGTCTATTCAATTTGATCAATGAACTGCCAACAGTATTTGAAGTTGTAACTGGTGCTGCAAAGAAACAAGTCAAAGAGAAGTCTTCAGTCTCAAACAACAGTGGCAGCAAATCTAAGTCCAGTTCTAAAGCGCGAGCTCCTGAAGCTCAGAGCAGACAACCAAAAGCGGCATTACAGCCAAAAGATGAGGAGGAAGAACTGGAAGAGCAGGATGATGATGAACAGGGCGAAGCCACTTGCGGGGCTTGTGGTGATAGTAACGGGGCTGATGAGTTCTGGATTTGCTGCGACATCTGCGAGAAGTGGTTCCATGGAAAATGTGTGAAGATCACTCCTGCTCGTGCTGAGCATATCAAGCAATACAAGTGCCCATCATGCAGCAGTAACAAGAGAGCTCGCTAG

Protein sequence

>Msa1089320

MEGRSRTVEQIFDDFKSRRTGIIKALTVDVEDFYRQCDPEKENLCLYGLLNENWEVNLPVEEVPPEIPEPVLGINFARDGMQEKDWLALVAVHSDTWLLSLAFYFGARFGFDKADRKRLFNLINELPTVFEVVTGAAKKQVKEKSSVSNNSGSKSKSSSKARAPEAQSRQPKAALQPKDEEEELEEQDDDEQGEATCGACGDSNGADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSSNKRAR*