AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1364210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1364210 MtrunA17_Chr2g0329821 99.600 250 1 0 1 250 1 250 0.0 514
Msa1364210 MtrunA17_Chr8g0343441 80.081 246 48 1 6 250 10 255 1.12e-123 352
Msa1364210 MtrunA17_Chr2g0300241 72.177 248 58 5 6 250 13 252 1.13e-113 326
Msa1364210 MtrunA17_Chr4g0076771 67.857 252 76 1 1 247 1 252 1.37e-111 321
Msa1364210 MtrunA17_Chr1g0150821 68.775 253 70 3 6 250 11 262 2.02e-108 313
Msa1364210 MtrunA17_Chr4g0006381 61.600 250 85 5 1 250 3 241 1.49e-91 270
Msa1364210 MtrunA17_Chr7g0242511 58.607 244 91 4 1 244 3 236 2.30e-86 256
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1364210 AT3G42790.1 72.653 245 61 3 6 250 11 249 2.46e-118 338
Msa1364210 AT5G20510.1 69.200 250 71 2 6 250 11 259 1.37e-113 327
Msa1364210 AT1G14510.1 67.755 245 76 3 6 250 10 251 7.18e-106 306
Msa1364210 AT2G02470.1 68.340 259 69 6 1 250 1 255 6.79e-105 304
Msa1364210 AT2G02470.2 68.504 254 68 6 1 250 1 246 4.83e-103 299
Msa1364210 AT5G26210.1 70.732 246 70 2 6 250 10 254 1.98e-93 275
Msa1364210 AT5G20510.2 68.519 216 62 2 40 250 4 218 5.28e-92 270
Msa1364210 AT5G05610.2 60.331 242 84 5 6 247 9 238 3.61e-88 261
Msa1364210 AT5G05610.1 60.331 242 84 5 6 247 9 238 3.61e-88 261
Msa1364210 AT3G11200.1 61.570 242 84 5 6 247 11 243 9.78e-86 255
Msa1364210 AT5G20510.3 74.194 155 40 0 6 160 11 165 1.02e-75 228
Msa1364210 AT3G11200.2 61.538 208 71 5 40 247 32 230 4.83e-72 220
Msa1364210 AT2G02470.3 72.785 158 38 2 1 154 1 157 1.04e-66 207

Find 93 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTCTTCCTCCTCATCTTT+TGG 0.240666 tig0018106:+272199 None:intergenic
GGTTGTCTGCTCTGAGCTTC+AGG 0.243347 tig0018106:+272238 None:intergenic
AAAACGATGTCGTTTGGATT+AGG 0.261991 tig0018106:+275454 None:intergenic
TTCTACTTTGGAGCCAGATT+TGG 0.290182 tig0018106:-274318 Msa1364210:CDS
GATTCAATGGGTTATGGTTA+AGG 0.299628 tig0018106:+275398 None:intergenic
ACGGATTGCTTAATGAGAAT+TGG 0.301755 tig0018106:-274485 Msa1364210:CDS
CATTGTTCAATTCGATTCAA+TGG 0.307254 tig0018106:+275385 None:intergenic
AAGGAGAATTTGTGCTTATA+CGG 0.310260 tig0018106:-274504 Msa1364210:CDS
CAAAATGTCATTCCTTCATT+TGG 0.312555 tig0018106:+271723 None:intergenic
AAACGATGTCGTTTGGATTA+GGG 0.318784 tig0018106:+275455 None:intergenic
AATCACATACAAAACTTTGT+TGG 0.336175 tig0018106:-271965 Msa1364210:three_prime_UTR
AACAGGGCGAAGCCACTTGC+GGG 0.339120 tig0018106:-272156 Msa1364210:CDS
CAATTCGATTCAATGGGTTA+TGG 0.346327 tig0018106:+275392 None:intergenic
TTTGGCTGTAATGCCGCTTT+TGG 0.349429 tig0018106:+272217 None:intergenic
GTAACGGGGCTGATGAGTTC+TGG 0.350703 tig0018106:-272120 Msa1364210:CDS
TGCTGGGTATCAACTTTGCC+AGG 0.351612 tig0018106:-274413 Msa1364210:CDS
CTTTGATGATTCCAGTTCTT+CGG 0.353581 tig0018106:+275315 None:intergenic
AAGAAATTATACCGACGGTT+AGG 0.356361 tig0018106:+275291 None:intergenic
ATTATTTACCGCTTTAGAAC+TGG 0.360765 tig0018106:+273492 None:intergenic
GGGCTTGTGGTGATAGTAAC+GGG 0.362851 tig0018106:-272135 Msa1364210:CDS
ATTCAATGGGTTATGGTTAA+GGG 0.365057 tig0018106:+275399 None:intergenic
CATTTCTTGCACTGCGAGAT+AGG 0.367114 tig0018106:-275487 Msa1364210:five_prime_UTR
AGAGATTCCTGAGCCTGTGC+TGG 0.371017 tig0018106:-274430 Msa1364210:CDS
GATTTCAAGAGCCGAAGAAC+TGG 0.371977 tig0018106:-275326 Msa1364210:CDS
ACAGTATTTGAAGTTGTAAC+TGG 0.378246 tig0018106:-273580 Msa1364210:CDS
AGATTGAAAACGATGTCGTT+TGG 0.383693 tig0018106:+275448 None:intergenic
CTTTCCCTTGCATTCTACTT+TGG 0.386606 tig0018106:-274330 Msa1364210:CDS
CGGATTGCTTAATGAGAATT+GGG 0.394937 tig0018106:-274484 Msa1364210:CDS
TTTCTCTTGCATTCCATCCC+TGG 0.397443 tig0018106:+274395 None:intergenic
AGAGCAGGATGATGATGAAC+AGG 0.397479 tig0018106:-272173 Msa1364210:CDS
TTCGAGGTAGTGCTTGTTTG+TGG 0.407783 tig0018106:+275612 None:intergenic
AGCTTTATCAAATCCAAATC+TGG 0.410286 tig0018106:+274305 None:intergenic
TTTATATTTACGCAAGGATT+GGG 0.413551 tig0018106:+275637 None:intergenic
AGCACAGGCTCAGGAATCTC+TGG 0.425752 tig0018106:+274432 None:intergenic
AAAAGATGAGGAGGAAGAAC+TGG 0.426868 tig0018106:-272197 Msa1364210:CDS
TTTATGAAGTTTGAGACATA+GGG 0.431717 tig0018106:-271886 Msa1364210:three_prime_UTR
TCTTGTTACTGCTGCATGAT+GGG 0.433135 tig0018106:+272008 None:intergenic
TCTGGAGGAACTTCTTCAAC+AGG 0.445499 tig0018106:+274450 None:intergenic
CAGTGGCCACCTTAGTGTTA+TGG 0.446538 tig0018106:-271771 Msa1364210:three_prime_UTR
AGAAAGAAAAGCATATTAAC+CGG 0.449243 tig0018106:+271929 None:intergenic
ATTGTTCAATTCGATTCAAT+GGG 0.450426 tig0018106:+275386 None:intergenic
AGAAATTATACCGACGGTTA+GGG 0.452362 tig0018106:+275292 None:intergenic
GGAGGAAGAACTGGAAGAGC+AGG 0.470600 tig0018106:-272188 Msa1364210:CDS
ACGACATTTGCACCAAATGA+AGG 0.471559 tig0018106:-271735 Msa1364210:three_prime_UTR
CCAGAACTAAAGAAAAGACT+TGG 0.475902 tig0018106:+271795 None:intergenic
CATTAATTTCCATAACACTA+AGG 0.480224 tig0018106:+271762 None:intergenic
CTCTTGTTACTGCTGCATGA+TGG 0.480424 tig0018106:+272007 None:intergenic
TGTTGGAGTCTTCACTGATC+CGG 0.484963 tig0018106:-271948 Msa1364210:three_prime_UTR
TTCTACAGACAATGTGATCC+TGG 0.488698 tig0018106:-275105 Msa1364210:intron
TTGATACCCAGCACAGGCTC+AGG 0.497706 tig0018106:+274423 None:intergenic
ATCACTGTGAACAGCAACTA+AGG 0.498800 tig0018106:+274362 None:intergenic
TTGCTGTTCACAGTGATACA+TGG 0.507689 tig0018106:-274356 Msa1364210:CDS
GTAGTTGAAACATTGTTGAC+TGG 0.509936 tig0018106:-271825 Msa1364210:three_prime_UTR
ATCTGCGAGAAGTGGTTCCA+TGG 0.517485 tig0018106:-272085 Msa1364210:CDS
GGTATCAACTTTGCCAGGGA+TGG 0.520071 tig0018106:-274408 Msa1364210:CDS
GAGATTCCTGAGCCTGTGCT+GGG 0.523852 tig0018106:-274429 Msa1364210:CDS
TTTCTTTCTAGACGCATTGG+TGG 0.530027 tig0018106:-271915 Msa1364210:three_prime_UTR
ATGGAATGCAAGAGAAAGAC+TGG 0.533268 tig0018106:-274389 Msa1364210:CDS
GAAGCCACTTGCGGGGCTTG+TGG 0.543776 tig0018106:-272148 Msa1364210:CDS
TTGATATGCTCAGCACGAGC+AGG 0.552258 tig0018106:+272043 None:intergenic
GAATCGAATTGAACAATGGA+AGG 0.552287 tig0018106:-275380 Msa1364210:exon
TTGGATTTGATAAAGCTGAC+AGG 0.552742 tig0018106:-274299 Msa1364210:intron
GGGGCTTGTGGTGATAGTAA+CGG 0.558893 tig0018106:-272136 Msa1364210:CDS
GTTACAACTTCAAATACTGT+TGG 0.565683 tig0018106:+273583 None:intergenic
GCTGCGACATCTGCGAGAAG+TGG 0.566172 tig0018106:-272093 Msa1364210:CDS
GAACAGGGCGAAGCCACTTG+CGG 0.571946 tig0018106:-272157 Msa1364210:CDS
TGGCTCCAAAGTAGAATGCA+AGG 0.572860 tig0018106:+274325 None:intergenic
TAGTTGAAACATTGTTGACT+GGG 0.579913 tig0018106:-271824 Msa1364210:three_prime_UTR
ATCTAAGTCCAGTTCTAAAG+CGG 0.587642 tig0018106:-273500 Msa1364210:intron
CATAACACTAAGGTGGCCAC+TGG 0.593168 tig0018106:+271772 None:intergenic
AGTCAACAATGTTTCAACTA+CGG 0.597010 tig0018106:+271827 None:intergenic
ATCACCACAAGCCCCGCAAG+TGG 0.598002 tig0018106:+272144 None:intergenic
TCAGAGCAGACAACCAAAAG+CGG 0.606960 tig0018106:-272230 Msa1364210:CDS
CAGAACTAAAGAAAAGACTT+GGG 0.612076 tig0018106:+271796 None:intergenic
ATCAGATTATGATGACGTGA+TGG 0.614427 tig0018106:+275688 None:intergenic
CATTGAATCGAATTGAACAA+TGG 0.620243 tig0018106:-275384 Msa1364210:exon
GCTGGGTATCAACTTTGCCA+GGG 0.620748 tig0018106:-274412 Msa1364210:CDS
TTATGAAGTTTGAGACATAG+GGG 0.621103 tig0018106:-271885 Msa1364210:three_prime_UTR
TCATAATCTGATTATTACAG+TGG 0.623153 tig0018106:-275677 Msa1364210:five_prime_UTR
TAATTTCCATAACACTAAGG+TGG 0.623750 tig0018106:+271765 None:intergenic
GCAAAGTTGATACCCAGCAC+AGG 0.629760 tig0018106:+274417 None:intergenic
ATCATCAAAGCCCTAACCGT+CGG 0.634254 tig0018106:-275302 Msa1364210:intron
GATTATGATGACGTGATGGA+CGG 0.635988 tig0018106:+275692 None:intergenic
GGCATTACAGCCAAAAGATG+AGG 0.636479 tig0018106:-272209 Msa1364210:CDS
GGCTCCAAAGTAGAATGCAA+GGG 0.639786 tig0018106:+274326 None:intergenic
ACAGGGCGAAGCCACTTGCG+GGG 0.643480 tig0018106:-272155 Msa1364210:CDS
ACAGGCTCAGGAATCTCTGG+AGG 0.651339 tig0018106:+274435 None:intergenic
ATTACAGCCAAAAGATGAGG+AGG 0.661732 tig0018106:-272206 Msa1364210:CDS
GAGCAGGATGATGATGAACA+GGG 0.682274 tig0018106:-272172 Msa1364210:CDS
GGCTTGTGGTGATAGTAACG+GGG 0.707309 tig0018106:-272134 Msa1364210:CDS
AACAAAACAAGACACAACGC+AGG 0.709831 tig0018106:+275583 None:intergenic
TCTTCAGTCTCAAACAACAG+TGG 0.724521 tig0018106:-273529 Msa1364210:CDS
TACAGTGGAAGCGAACACAG+AGG 0.787896 tig0018106:-275662 Msa1364210:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAAATACAACTATTTTAA+GGG + tig0018106:272869-272888 None:intergenic 10.0%
!!! AAATAAATACAACTATTTTA+AGG + tig0018106:272870-272889 None:intergenic 10.0%
!! ATAAAGAAAATGATATTATT+AGG + tig0018106:274786-274805 None:intergenic 10.0%
!!! TTCAATCTTTTTCAAAATTT+TGG - tig0018106:272165-272184 Msa1364210:CDS 15.0%
!! TAAATAAAATTCAAAAACCT+TGG + tig0018106:272253-272272 None:intergenic 15.0%
!!! TTTTATTTTCCATCAATTTT+AGG - tig0018106:272420-272439 Msa1364210:intron 15.0%
!!! TTTATTTTCCATCAATTTTA+GGG - tig0018106:272421-272440 Msa1364210:intron 15.0%
!!! AAATGCCTTAATTTTAAAAA+GGG + tig0018106:274267-274286 None:intergenic 15.0%
!!! AAAATGCCTTAATTTTAAAA+AGG + tig0018106:274268-274287 None:intergenic 15.0%
!!! AAATTAAGGCATTTTTTAAA+TGG - tig0018106:274273-274292 Msa1364210:intron 15.0%
!! ATTTGTGAATAAAAAAGTAA+AGG - tig0018106:274319-274338 Msa1364210:CDS 15.0%
!! AAATAAATAAGTTAACAATG+TGG - tig0018106:274446-274465 Msa1364210:CDS 15.0%
!!! TTTATTGTCATTTTGAATTT+CGG - tig0018106:274801-274820 Msa1364210:intron 15.0%
!! GTATATAAACATAACTTATT+TGG + tig0018106:275054-275073 None:intergenic 15.0%
!!! ATCATCAAAAATTTGTTCAA+CGG + tig0018106:272089-272108 None:intergenic 20.0%
!!! TTTTTCAAAATTTTGGCAAA+AGG - tig0018106:272172-272191 Msa1364210:CDS 20.0%
!!! TTTTCAAAATTTTGGCAAAA+GGG - tig0018106:272173-272192 Msa1364210:CDS 20.0%
!!! TTTCATTAAATTTTCTACCA+AGG - tig0018106:272233-272252 Msa1364210:CDS 20.0%
!!! ATAAAAGAGCATTCAAATAT+CGG + tig0018106:272406-272425 None:intergenic 20.0%
!! TGATAATTCATTGTTCTTTA+TGG - tig0018106:272505-272524 Msa1364210:intron 20.0%
!! AGATAAAAATAGTTATGCTT+CGG + tig0018106:273169-273188 None:intergenic 20.0%
!! AGAAAAATCTTATTCAACAA+GGG + tig0018106:273306-273325 None:intergenic 20.0%
!! AAGAAAAATCTTATTCAACA+AGG + tig0018106:273307-273326 None:intergenic 20.0%
!!! CGCTATTATTATTTTAAACA+GGG + tig0018106:274079-274098 None:intergenic 20.0%
!!! TCGCTATTATTATTTTAAAC+AGG + tig0018106:274080-274099 None:intergenic 20.0%
!! TCTATTGTTTATCCTATAAT+GGG - tig0018106:274159-274178 Msa1364210:intron 20.0%
!!! AGAATCCCTTTTTAAAATTA+AGG - tig0018106:274259-274278 Msa1364210:intron 20.0%
!!! TTTTTTTGCAATAAACAACA+AGG + tig0018106:274424-274443 None:intergenic 20.0%
!!! TTATTGTCATTTTGAATTTC+GGG - tig0018106:274802-274821 Msa1364210:intron 20.0%
!! AAGTATACATATCATTAACA+GGG + tig0018106:274888-274907 None:intergenic 20.0%
!! TATCTAATTGATATCTTGTT+TGG - tig0018106:275106-275125 Msa1364210:CDS 20.0%
!!! ATCTAATTGATATCTTGTTT+GGG - tig0018106:275107-275126 Msa1364210:CDS 20.0%
!! TTAACAATTAGATAAGAACA+CGG + tig0018106:275156-275175 None:intergenic 20.0%
! TCATAATCTGATTATTACAG+TGG - tig0018106:271755-271774 Msa1364210:three_prime_UTR 25.0%
! TTTATATTTACGCAAGGATT+GGG + tig0018106:271798-271817 None:intergenic 25.0%
!! TTTTATATTTACGCAAGGAT+TGG + tig0018106:271799-271818 None:intergenic 25.0%
! ATTGTTCAATTCGATTCAAT+GGG + tig0018106:272049-272068 None:intergenic 25.0%
! TATTCTTGCACTAAAATGTT+TGG - tig0018106:272271-272290 Msa1364210:intron 25.0%
! ACATTGAAATTAAACTAACC+AGG + tig0018106:272348-272367 None:intergenic 25.0%
! TAATTGAACCCTAAAATTGA+TGG + tig0018106:272432-272451 None:intergenic 25.0%
! ATTGACTGATAAATAAAAGG+CGG + tig0018106:272573-272592 None:intergenic 25.0%
!!! CTTTTATTTATCAGTCAATG+CGG - tig0018106:272574-272593 Msa1364210:intron 25.0%
!!! TAAGCTATTTCTAAGGAAAA+TGG + tig0018106:272771-272790 None:intergenic 25.0%
!!! AATAATTTGCTTATCCAAAC+AGG - tig0018106:272843-272862 Msa1364210:intron 25.0%
! GATAAAAATAGTTATGCTTC+GGG + tig0018106:273168-273187 None:intergenic 25.0%
! GCAAATAAAATTGCAAATCA+AGG + tig0018106:273380-273399 None:intergenic 25.0%
! TTGCTTATAAATCATTGTTG+AGG - tig0018106:273396-273415 Msa1364210:intron 25.0%
!!! ATACCATTTTTTCCTGAAAA+AGG - tig0018106:273465-273484 Msa1364210:intron 25.0%
!!! TACCATTTTTTCCTGAAAAA+GGG - tig0018106:273466-273485 Msa1364210:intron 25.0%
! TAAAGAAAAAACCACTTGAT+AGG + tig0018106:273670-273689 None:intergenic 25.0%
!! AATCATCTGTGTATTTGTTT+TGG - tig0018106:273724-273743 Msa1364210:intron 25.0%
! GTCTATTGTTTATCCTATAA+TGG - tig0018106:274158-274177 Msa1364210:intron 25.0%
!! AAAGGAACAACTAGTTTAAT+TGG - tig0018106:274337-274356 Msa1364210:CDS 25.0%
!! ACTAAAGAATCGTTTCATTT+TGG + tig0018106:274378-274397 None:intergenic 25.0%
! TTGTCTCCTTCTTTATTAAT+CGG - tig0018106:274504-274523 Msa1364210:CDS 25.0%
! GTGAAGTATGATGAATATAT+TGG - tig0018106:274637-274656 Msa1364210:intron 25.0%
! GAATTTGGACTGAATATTTA+TGG - tig0018106:274701-274720 Msa1364210:intron 25.0%
! CAAGTATACATATCATTAAC+AGG + tig0018106:274889-274908 None:intergenic 25.0%
! CTGTTAATGATATGTATACT+TGG - tig0018106:274887-274906 Msa1364210:intron 25.0%
! TAATGATATGTATACTTGGT+TGG - tig0018106:274891-274910 Msa1364210:intron 25.0%
! TATCTCTCATCATTATTAAG+CGG + tig0018106:274999-275018 None:intergenic 25.0%
! AAACATAACTTATTTGGAAG+TGG + tig0018106:275048-275067 None:intergenic 25.0%
! AATCACATACAAAACTTTGT+TGG - tig0018106:275467-275486 Msa1364210:five_prime_UTR 25.0%
!! AGAAAGAAAAGCATATTAAC+CGG + tig0018106:275506-275525 None:intergenic 25.0%
!!! TTTTATGAAGTTTGAGACAT+AGG - tig0018106:275545-275564 Msa1364210:five_prime_UTR 25.0%
!! TTTATGAAGTTTGAGACATA+GGG - tig0018106:275546-275565 Msa1364210:five_prime_UTR 25.0%
! CATTAATTTCCATAACACTA+AGG + tig0018106:275673-275692 None:intergenic 25.0%
! GTGGATTTTATATTTACGCA+AGG + tig0018106:271804-271823 None:intergenic 30.0%
!! ATTCAATGGGTTATGGTTAA+GGG + tig0018106:272036-272055 None:intergenic 30.0%
CATTGTTCAATTCGATTCAA+TGG + tig0018106:272050-272069 None:intergenic 30.0%
CATTGAATCGAATTGAACAA+TGG - tig0018106:272048-272067 Msa1364210:CDS 30.0%
TGAACAAGAAATTATACCGA+CGG + tig0018106:272149-272168 None:intergenic 30.0%
CAAAATTTGTAGATCAAGCA+AGG + tig0018106:272209-272228 None:intergenic 30.0%
! CTTGCTTGATCTACAAATTT+TGG - tig0018106:272207-272226 Msa1364210:CDS 30.0%
AGGGTTCAATTATTTGCAAT+TGG - tig0018106:272440-272459 Msa1364210:intron 30.0%
!! CGCATTGACTGATAAATAAA+AGG + tig0018106:272576-272595 None:intergenic 30.0%
! TGCGACAAATTTTGCATTAT+AGG + tig0018106:272607-272626 None:intergenic 30.0%
TTGTCGCATTTCTATGATTT+AGG - tig0018106:272619-272638 Msa1364210:intron 30.0%
!! ATAAGTTTTGTGAGACTGTT+TGG - tig0018106:272680-272699 Msa1364210:intron 30.0%
!! TAAGTTTTGTGAGACTGTTT+GGG - tig0018106:272681-272700 Msa1364210:intron 30.0%
!! GCTTACATAAGCTATTTCTA+AGG + tig0018106:272778-272797 None:intergenic 30.0%
CTGTTGTATTCTTTCAGAAA+AGG - tig0018106:272909-272928 Msa1364210:intron 30.0%
AAGGAGAATTTGTGCTTATA+CGG - tig0018106:272928-272947 Msa1364210:intron 30.0%
! AGCTTTATCAAATCCAAATC+TGG + tig0018106:273130-273149 None:intergenic 30.0%
ACTCGTGAAAAAGTTATATC+AGG - tig0018106:273196-273215 Msa1364210:intron 30.0%
ATATCAGGATGAGTATGTTA+AGG - tig0018106:273211-273230 Msa1364210:intron 30.0%
!!! ACCATTTTTTCCTGAAAAAG+GGG - tig0018106:273467-273486 Msa1364210:intron 30.0%
!!! TGTTTTAAGATAGTGCAAGA+AGG - tig0018106:273601-273620 Msa1364210:CDS 30.0%
AATTGAAGATTCCTATCAAG+TGG - tig0018106:273656-273675 Msa1364210:intron 30.0%
GTTACAACTTCAAATACTGT+TGG + tig0018106:273852-273871 None:intergenic 30.0%
! ACAGTATTTGAAGTTGTAAC+TGG - tig0018106:273852-273871 Msa1364210:intron 30.0%
!! ATTATTTACCGCTTTAGAAC+TGG + tig0018106:273943-273962 None:intergenic 30.0%
TTCAAGTGTAGACTGTATAT+AGG - tig0018106:274235-274254 Msa1364210:intron 30.0%
! TTAATTGGTTTCTTTGAGCA+AGG - tig0018106:274352-274371 Msa1364210:CDS 30.0%
TAGACTCCGATTAATAAAGA+AGG + tig0018106:274513-274532 None:intergenic 30.0%
! AATCGGAGTCTAAAATACTT+TGG - tig0018106:274521-274540 Msa1364210:intron 30.0%
!!! TTTGGTGTTTCGTTACATTT+TGG - tig0018106:274539-274558 Msa1364210:intron 30.0%
!! TTGGTGTTTCGTTACATTTT+GGG - tig0018106:274540-274559 Msa1364210:intron 30.0%
! TGTACTTGTATGATGGAATT+TGG - tig0018106:274686-274705 Msa1364210:intron 30.0%
AAGGTATGCAGAAATAAAAG+AGG - tig0018106:274748-274767 Msa1364210:intron 30.0%
TATACATATCATTAACAGGG+TGG + tig0018106:274885-274904 None:intergenic 30.0%
TATGTATACTTGGTTGGAAA+TGG - tig0018106:274897-274916 Msa1364210:intron 30.0%
AGTTTCCACTAACTATGATA+TGG - tig0018106:274971-274990 Msa1364210:intron 30.0%
ACTTTCAATGCAAAATTGTG+TGG - tig0018106:275072-275091 Msa1364210:intron 30.0%
! TTATGAAGTTTGAGACATAG+GGG - tig0018106:275547-275566 Msa1364210:five_prime_UTR 30.0%
AGTCAACAATGTTTCAACTA+CGG + tig0018106:275608-275627 None:intergenic 30.0%
! TAGTTGAAACATTGTTGACT+GGG - tig0018106:275608-275627 Msa1364210:five_prime_UTR 30.0%
CAGAACTAAAGAAAAGACTT+GGG + tig0018106:275639-275658 None:intergenic 30.0%
TAATTTCCATAACACTAAGG+TGG + tig0018106:275670-275689 None:intergenic 30.0%
CAAAATGTCATTCCTTCATT+TGG + tig0018106:275712-275731 None:intergenic 30.0%
! ATCAGATTATGATGACGTGA+TGG + tig0018106:271747-271766 None:intergenic 35.0%
! AAACGATGTCGTTTGGATTA+GGG + tig0018106:271980-271999 None:intergenic 35.0%
! AAAACGATGTCGTTTGGATT+AGG + tig0018106:271981-272000 None:intergenic 35.0%
AGATTGAAAACGATGTCGTT+TGG + tig0018106:271987-272006 None:intergenic 35.0%
!! GATTCAATGGGTTATGGTTA+AGG + tig0018106:272037-272056 None:intergenic 35.0%
!! CAATTCGATTCAATGGGTTA+TGG + tig0018106:272043-272062 None:intergenic 35.0%
GAATCGAATTGAACAATGGA+AGG - tig0018106:272052-272071 Msa1364210:CDS 35.0%
! CTTTGATGATTCCAGTTCTT+CGG + tig0018106:272120-272139 None:intergenic 35.0%
AGAAATTATACCGACGGTTA+GGG + tig0018106:272143-272162 None:intergenic 35.0%
AAGAAATTATACCGACGGTT+AGG + tig0018106:272144-272163 None:intergenic 35.0%
!! CTTGTAGCTTTGAATTCTGA+TGG - tig0018106:272533-272552 Msa1364210:intron 35.0%
! TCTATGATTTAGGACCTGTT+TGG - tig0018106:272629-272648 Msa1364210:intron 35.0%
TCAAATAAGCCAATCCAAAC+AGG + tig0018106:272646-272665 None:intergenic 35.0%
GCTTATTTGAGCTTATCTAC+TGG - tig0018106:272656-272675 Msa1364210:intron 35.0%
!! AACTATTTTAAGGGCCTGTT+TGG + tig0018106:272860-272879 None:intergenic 35.0%
! ACGGATTGCTTAATGAGAAT+TGG - tig0018106:272947-272966 Msa1364210:intron 35.0%
CGGATTGCTTAATGAGAATT+GGG - tig0018106:272948-272967 Msa1364210:intron 35.0%
TTGGATTTGATAAAGCTGAC+AGG - tig0018106:273133-273152 Msa1364210:intron 35.0%
AGTATGTTAAGGCAGTAGTT+TGG - tig0018106:273222-273241 Msa1364210:intron 35.0%
TTGTTTAGTCATCGTTGTGT+TGG - tig0018106:273268-273287 Msa1364210:intron 35.0%
GCTAGAAAGCAGTTATAAAG+TGG + tig0018106:273352-273371 None:intergenic 35.0%
!!! TCCCCTTTTTCAGGAAAAAA+TGG + tig0018106:273471-273490 None:intergenic 35.0%
ATAGTGCAAGAAGGAAAAGT+TGG - tig0018106:273610-273629 Msa1364210:CDS 35.0%
AATGGCAAATTAGGACAAGA+AGG + tig0018106:273788-273807 None:intergenic 35.0%
TGCATCACAAATGGCAAATT+AGG + tig0018106:273797-273816 None:intergenic 35.0%
! TAATTTGCCATTTGTGATGC+AGG - tig0018106:273796-273815 Msa1364210:intron 35.0%
!! ATCTAAGTCCAGTTCTAAAG+CGG - tig0018106:273932-273951 Msa1364210:intron 35.0%
TGAATCGCAGTGTAAAACTT+AGG - tig0018106:274018-274037 Msa1364210:intron 35.0%
TTCAAGTGTAGACTGTTCAT+AGG - tig0018106:274047-274066 Msa1364210:intron 35.0%
CATGGACAAAAGACAATACA+TGG + tig0018106:274121-274140 None:intergenic 35.0%
! CATGTATTGTCTTTTGTCCA+TGG - tig0018106:274119-274138 Msa1364210:intron 35.0%
CAATGCATGAAAGATAACCA+TGG + tig0018106:274139-274158 None:intergenic 35.0%
GTCTACACTTGAAAAACCAT+AGG + tig0018106:274228-274247 None:intergenic 35.0%
TGCAATAAACAACAAGGTCT+TGG + tig0018106:274418-274437 None:intergenic 35.0%
! TGGTGTTTCGTTACATTTTG+GGG - tig0018106:274541-274560 Msa1364210:intron 35.0%
!! TCGTTACATTTTGGGGATAA+TGG - tig0018106:274548-274567 Msa1364210:intron 35.0%
GAAGAACTTTACCTTAAGCT+TGG - tig0018106:274570-274589 Msa1364210:intron 35.0%
TTGCAGAATAACCAAGCTTA+AGG + tig0018106:274584-274603 None:intergenic 35.0%
! CAAGCTTTGTACTTGTATGA+TGG - tig0018106:274679-274698 Msa1364210:intron 35.0%
! CACTTGAATTGCTACTTGTA+AGG - tig0018106:274729-274748 Msa1364210:intron 35.0%
!! TGAATTTCGGGTTTAGAATG+TGG - tig0018106:274814-274833 Msa1364210:intron 35.0%
AGTTAGTGGAAACTTGTGAA+GGG + tig0018106:274965-274984 None:intergenic 35.0%
TAGTTAGTGGAAACTTGTGA+AGG + tig0018106:274966-274985 None:intergenic 35.0%
TCAATGCAAAATTGTGTGGA+AGG - tig0018106:275076-275095 Msa1364210:intron 35.0%
! TGATCTTCACACATTTTCCA+TGG + tig0018106:275367-275386 None:intergenic 35.0%
GTAGTTGAAACATTGTTGAC+TGG - tig0018106:275607-275626 Msa1364210:five_prime_UTR 35.0%
CCAGAACTAAAGAAAAGACT+TGG + tig0018106:275640-275659 None:intergenic 35.0%
!! CCAAGTCTTTTCTTTAGTTC+TGG - tig0018106:275637-275656 Msa1364210:five_prime_UTR 35.0%
! GATTATGATGACGTGATGGA+CGG + tig0018106:271743-271762 None:intergenic 40.0%
AACAAAACAAGACACAACGC+AGG + tig0018106:271852-271871 None:intergenic 40.0%
TTCTACAGACAATGTGATCC+TGG - tig0018106:272327-272346 Msa1364210:intron 40.0%
!! GTAGCTTTGAATTCTGATGG+AGG - tig0018106:272536-272555 Msa1364210:intron 40.0%
! GATTTAGGACCTGTTTGGAT+TGG - tig0018106:272634-272653 Msa1364210:intron 40.0%
ATGGAATGCAAGAGAAAGAC+TGG - tig0018106:273043-273062 Msa1364210:intron 40.0%
ATCACTGTGAACAGCAACTA+AGG + tig0018106:273073-273092 None:intergenic 40.0%
! TTGCTGTTCACAGTGATACA+TGG - tig0018106:273076-273095 Msa1364210:intron 40.0%
CTTTCCCTTGCATTCTACTT+TGG - tig0018106:273102-273121 Msa1364210:intron 40.0%
!! TTCTACTTTGGAGCCAGATT+TGG - tig0018106:273114-273133 Msa1364210:intron 40.0%
TGATGTGACTAAGAGGTCAT+AGG + tig0018106:273536-273555 None:intergenic 40.0%
! AGCCACAATTGATGCTCTTT+TGG - tig0018106:273692-273711 Msa1364210:intron 40.0%
!! GACCAAAAGAGCATCAATTG+TGG + tig0018106:273697-273716 None:intergenic 40.0%
TCTTCAGTCTCAAACAACAG+TGG - tig0018106:273903-273922 Msa1364210:intron 40.0%
CAATACATGGAGAGTTTGTC+AGG + tig0018106:274108-274127 None:intergenic 40.0%
CACAGACTAAACAATCTGCA+TGG + tig0018106:274191-274210 None:intergenic 40.0%
TGTTCTCATCTATCTGCCTA+TGG - tig0018106:274209-274228 Msa1364210:intron 40.0%
AAACAACAAGGTCTTGGATG+AGG + tig0018106:274412-274431 None:intergenic 40.0%
! GCACAAGTTTTCAACATGAG+AGG - tig0018106:275020-275039 Msa1364210:intron 40.0%
ATTACAGCCAAAAGATGAGG+AGG - tig0018106:275226-275245 Msa1364210:intron 40.0%
! AGTTCTTCCTCCTCATCTTT+TGG + tig0018106:275236-275255 None:intergenic 40.0%
AAAAGATGAGGAGGAAGAAC+TGG - tig0018106:275235-275254 Msa1364210:intron 40.0%
TCTTGTTACTGCTGCATGAT+GGG + tig0018106:275427-275446 None:intergenic 40.0%
! GCTTTTCTTTCTAGACGCAT+TGG - tig0018106:275514-275533 Msa1364210:five_prime_UTR 40.0%
TTTCTTTCTAGACGCATTGG+TGG - tig0018106:275517-275536 Msa1364210:five_prime_UTR 40.0%
!!! TTTTCTTTAGTTCTGGCCAG+TGG - tig0018106:275644-275663 Msa1364210:five_prime_UTR 40.0%
ACGACATTTGCACCAAATGA+AGG - tig0018106:275697-275716 Msa1364210:five_prime_UTR 40.0%
TTCGAGGTAGTGCTTGTTTG+TGG + tig0018106:271823-271842 None:intergenic 45.0%
! ACAACGCAGGTTTTTCTTCG+AGG + tig0018106:271839-271858 None:intergenic 45.0%
CATTTCTTGCACTGCGAGAT+AGG - tig0018106:271945-271964 Msa1364210:three_prime_UTR 45.0%
GATTTCAAGAGCCGAAGAAC+TGG - tig0018106:272106-272125 Msa1364210:CDS 45.0%
ATCATCAAAGCCCTAACCGT+CGG - tig0018106:272130-272149 Msa1364210:CDS 45.0%
TCTGGAGGAACTTCTTCAAC+AGG + tig0018106:272985-273004 None:intergenic 45.0%
TTTCTCTTGCATTCCATCCC+TGG + tig0018106:273040-273059 None:intergenic 45.0%
GGCTCCAAAGTAGAATGCAA+GGG + tig0018106:273109-273128 None:intergenic 45.0%
TGGCTCCAAAGTAGAATGCA+AGG + tig0018106:273110-273129 None:intergenic 45.0%
GTTGAGGCAGTATTCCAACA+CGG - tig0018106:273412-273431 Msa1364210:intron 45.0%
! AAGTAAGGCTCCCCTTTTTC+AGG + tig0018106:273480-273499 None:intergenic 45.0%
CCTCTTGCAGATGCAAAGTA+AGG + tig0018106:273495-273514 None:intergenic 45.0%
CCTTACTTTGCATCTGCAAG+AGG - tig0018106:273492-273511 Msa1364210:intron 45.0%
CCATGTGTGATGTGACTAAG+AGG + tig0018106:273543-273562 None:intergenic 45.0%
CCTCTTAGTCACATCACACA+TGG - tig0018106:273540-273559 Msa1364210:CDS 45.0%
CATGGCAGCATTTCTATAGC+AGG - tig0018106:273558-273577 Msa1364210:CDS 45.0%
GCAAGAAGGAAAAGTTGGAC+TGG - tig0018106:273615-273634 Msa1364210:CDS 45.0%
GACGTTTCCTGCATCACAAA+TGG + tig0018106:273806-273825 None:intergenic 45.0%
!! GCATGGAGAGTACCCATTAT+AGG + tig0018106:274174-274193 None:intergenic 45.0%
GAAGGAGACAAGCTGTAAAC+TGG + tig0018106:274495-274514 None:intergenic 45.0%
TGGAAACTTGTGAAGGGAGA+TGG + tig0018106:274959-274978 None:intergenic 45.0%
!! CGGTGCCATATCATAGTTAG+TGG + tig0018106:274979-274998 None:intergenic 45.0%
TCAGAGCAGACAACCAAAAG+CGG - tig0018106:275202-275221 Msa1364210:intron 45.0%
!!! TTTGGCTGTAATGCCGCTTT+TGG + tig0018106:275218-275237 None:intergenic 45.0%
GGCATTACAGCCAAAAGATG+AGG - tig0018106:275223-275242 Msa1364210:intron 45.0%
! AGAGCAGGATGATGATGAAC+AGG - tig0018106:275259-275278 Msa1364210:intron 45.0%
! GAGCAGGATGATGATGAACA+GGG - tig0018106:275260-275279 Msa1364210:intron 45.0%
CTCTTGTTACTGCTGCATGA+TGG + tig0018106:275428-275447 None:intergenic 45.0%
TGTTGGAGTCTTCACTGATC+CGG - tig0018106:275484-275503 Msa1364210:five_prime_UTR 45.0%
TACAGTGGAAGCGAACACAG+AGG - tig0018106:271770-271789 Msa1364210:three_prime_UTR 50.0%
!! GCAAAGTTGATACCCAGCAC+AGG + tig0018106:273018-273037 None:intergenic 50.0%
TGCTGGGTATCAACTTTGCC+AGG - tig0018106:273019-273038 Msa1364210:intron 50.0%
GCTGGGTATCAACTTTGCCA+GGG - tig0018106:273020-273039 Msa1364210:intron 50.0%
GGTATCAACTTTGCCAGGGA+TGG - tig0018106:273024-273043 Msa1364210:intron 50.0%
GCAGTATTCCAACACGGAGA+CGG - tig0018106:273418-273437 Msa1364210:intron 50.0%
TTCAACATCCGTCTCCGTGT+TGG + tig0018106:273429-273448 None:intergenic 50.0%
GGGGCTTGTGGTGATAGTAA+CGG - tig0018106:275296-275315 Msa1364210:intron 50.0%
GGGCTTGTGGTGATAGTAAC+GGG - tig0018106:275297-275316 Msa1364210:intron 50.0%
GGCTTGTGGTGATAGTAACG+GGG - tig0018106:275298-275317 Msa1364210:intron 50.0%
ATCTGCGAGAAGTGGTTCCA+TGG - tig0018106:275347-275366 Msa1364210:CDS 50.0%
TTGATATGCTCAGCACGAGC+AGG + tig0018106:275392-275411 None:intergenic 50.0%
CATAACACTAAGGTGGCCAC+TGG + tig0018106:275663-275682 None:intergenic 50.0%
CAGTGGCCACCTTAGTGTTA+TGG - tig0018106:275661-275680 Msa1364210:five_prime_UTR 50.0%
ACAGGCTCAGGAATCTCTGG+AGG + tig0018106:273000-273019 None:intergenic 55.0%
AGCACAGGCTCAGGAATCTC+TGG + tig0018106:273003-273022 None:intergenic 55.0%
AGAGATTCCTGAGCCTGTGC+TGG - tig0018106:273002-273021 Msa1364210:intron 55.0%
GAGATTCCTGAGCCTGTGCT+GGG - tig0018106:273003-273022 Msa1364210:intron 55.0%
TTGATACCCAGCACAGGCTC+AGG + tig0018106:273012-273031 None:intergenic 55.0%
GAGGTCATAGGCTCAAGTCG+TGG + tig0018106:273524-273543 None:intergenic 55.0%
! GGTTGTCTGCTCTGAGCTTC+AGG + tig0018106:275197-275216 None:intergenic 55.0%
GGAGGAAGAACTGGAAGAGC+AGG - tig0018106:275244-275263 Msa1364210:intron 55.0%
! GTAACGGGGCTGATGAGTTC+TGG - tig0018106:275312-275331 Msa1364210:CDS 55.0%
GAACAGGGCGAAGCCACTTG+CGG - tig0018106:275275-275294 Msa1364210:intron 60.0%
AACAGGGCGAAGCCACTTGC+GGG - tig0018106:275276-275295 Msa1364210:intron 60.0%
ATCACCACAAGCCCCGCAAG+TGG + tig0018106:275291-275310 None:intergenic 60.0%
GCTGCGACATCTGCGAGAAG+TGG - tig0018106:275339-275358 Msa1364210:CDS 60.0%
ACAGGGCGAAGCCACTTGCG+GGG - tig0018106:275277-275296 Msa1364210:intron 65.0%
GAAGCCACTTGCGGGGCTTG+TGG - tig0018106:275284-275303 Msa1364210:intron 65.0%
Chromosome Type Strat End Strand Name
tig0018106 gene 271720 275734 271720 ID=Msa1364210;Name=Msa1364210
tig0018106 mRNA 271720 275734 271720 ID=Msa1364210-mRNA-1;Parent=Msa1364210;Name=Msa1364210-mRNA-1;_AED=0.14;_eAED=0.14;_QI=347|1|1|1|1|1|5|277|250
tig0018106 exon 271720 272266 271720 ID=Msa1364210-mRNA-1:exon:13900;Parent=Msa1364210-mRNA-1
tig0018106 exon 273501 273636 273501 ID=Msa1364210-mRNA-1:exon:13899;Parent=Msa1364210-mRNA-1
tig0018106 exon 274300 274528 274300 ID=Msa1364210-mRNA-1:exon:13898;Parent=Msa1364210-mRNA-1
tig0018106 exon 275106 275138 275106 ID=Msa1364210-mRNA-1:exon:13897;Parent=Msa1364210-mRNA-1
tig0018106 exon 275303 275734 275303 ID=Msa1364210-mRNA-1:exon:13896;Parent=Msa1364210-mRNA-1
tig0018106 five_prime_UTR 275388 275734 275388 ID=Msa1364210-mRNA-1:five_prime_utr;Parent=Msa1364210-mRNA-1
tig0018106 CDS 275303 275387 275303 ID=Msa1364210-mRNA-1:cds;Parent=Msa1364210-mRNA-1
tig0018106 CDS 275106 275138 275106 ID=Msa1364210-mRNA-1:cds;Parent=Msa1364210-mRNA-1
tig0018106 CDS 274300 274528 274300 ID=Msa1364210-mRNA-1:cds;Parent=Msa1364210-mRNA-1
tig0018106 CDS 273501 273636 273501 ID=Msa1364210-mRNA-1:cds;Parent=Msa1364210-mRNA-1
tig0018106 CDS 271997 272266 271997 ID=Msa1364210-mRNA-1:cds;Parent=Msa1364210-mRNA-1
tig0018106 three_prime_UTR 271720 271996 271720 ID=Msa1364210-mRNA-1:three_prime_utr;Parent=Msa1364210-mRNA-1
Gene Sequence

>Msa1364210

ATGGAAGGTCGAAGTCGCACCGTTGAACAAATTTTTGATGATTTCAAGAGCCGAAGAACTGGAATCATCAAAGCCCTAACCGTCGATGTTGAAGATTTCTACAGACAATGTGATCCTGAAAAGGAGAATTTGTGCTTATACGGATTGCTTAATGAGAATTGGGAAGTGAATTTACCTGTTGAAGAAGTTCCTCCAGAGATTCCTGAGCCTGTGCTGGGTATCAACTTTGCCAGGGATGGAATGCAAGAGAAAGACTGGTTAGCCTTAGTTGCTGTTCACAGTGATACATGGTTACTTTCCCTTGCATTCTACTTTGGAGCCAGATTTGGATTTGATAAAGCTGACAGGAAACGTCTATTCAATTTGATCAATGAACTGCCAACAGTATTTGAAGTTGTAACTGGTGCTGCAAAGAAACAAGTCAAAGAGAAGTCTTCAGTCTCAAACAACAGTGGCAGCAAATCTAAGTCCAGTTCTAAAGCGCGAGCTCCTGAAGCTCAGAGCAGACAACCAAAAGCGGCATTACAGCCAAAAGATGAGGAGGAAGAACTGGAAGAGCAGGATGATGATGAACAGGGCGAAGCCACTTGCGGGGCTTGTGGTGATAGTAACGGGGCTGATGAGTTCTGGATTTGCTGCGACATCTGCGAGAAGTGGTTCCATGGAAAATGTGTGAAGATCACTCCTGCTCGTGCTGAGCATATCAAGCAATACAAGTGCCCATCATGCAGCAGTAACAAGAGAGCTCGCTAG

Protein sequence

>Msa1364210

MEGRSRTVEQIFDDFKSRRTGIIKALTVDVEDFYRQCDPEKENLCLYGLLNENWEVNLPVEEVPPEIPEPVLGINFARDGMQEKDWLALVAVHSDTWLLSLAFYFGARFGFDKADRKRLFNLINELPTVFEVVTGAAKKQVKEKSSVSNNSGSKSKSSSKARAPEAQSRQPKAALQPKDEEEELEEQDDDEQGEATCGACGDSNGADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSSNKRAR*