Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0201320 | XP_039686401.1 | 85.380 | 171 | 20 | 2 | 1 | 166 | 1 | 171 | 2.47e-95 | 298 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0201320 | A0A072V7U2 | 85.380 | 171 | 20 | 2 | 1 | 166 | 1 | 171 | 1.18e-95 | 298 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0201320 | Msa0201340 | 0.844232 | 8.589469e-59 | -8.615850e-47 |
| Msa0201320 | Msa0201360 | 0.859091 | 5.255536e-63 | -8.615850e-47 |
| Msa0201320 | Msa0243900 | 0.856600 | 2.882526e-62 | -8.615850e-47 |
| Msa0201320 | Msa0243920 | 0.823838 | 1.116300e-53 | -8.615850e-47 |
| Msa0201320 | Msa0282580 | 0.869255 | 3.549900e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0201320 | MtrunA17_Chr2g0297651 | 85.380 | 171 | 20 | 2 | 1 | 166 | 1 | 171 | 1.53e-98 | 298 |
| Msa0201320 | MtrunA17_Chr2g0297681 | 74.706 | 170 | 38 | 2 | 1 | 166 | 1 | 169 | 1.02e-83 | 260 |
| Msa0201320 | MtrunA17_Chr2g0297691 | 72.093 | 172 | 41 | 4 | 1 | 166 | 1 | 171 | 1.03e-78 | 247 |
| Msa0201320 | MtrunA17_Chr2g0297541 | 64.088 | 181 | 49 | 2 | 1 | 166 | 1 | 180 | 7.53e-78 | 229 |
| Msa0201320 | MtrunA17_Chr2g0297631 | 68.715 | 179 | 40 | 4 | 1 | 166 | 1 | 176 | 2.35e-70 | 228 |
| Msa0201320 | MtrunA17_Chr2g0297511 | 69.737 | 76 | 22 | 1 | 5 | 80 | 1 | 75 | 5.41e-32 | 109 |
| Msa0201320 | MtrunA17_Chr7g0224661 | 35.922 | 103 | 62 | 2 | 5 | 107 | 7 | 105 | 1.27e-14 | 70.1 |
| Msa0201320 | MtrunA17_Chr8g0356571 | 33.945 | 109 | 69 | 2 | 1 | 107 | 1 | 108 | 1.48e-14 | 67.8 |
| Msa0201320 | MtrunA17_Chr0c01g0489151 | 35.922 | 103 | 62 | 2 | 5 | 107 | 7 | 105 | 1.54e-14 | 69.3 |
| Msa0201320 | MtrunA17_Chr3g0108461 | 37.113 | 97 | 56 | 3 | 5 | 98 | 7 | 101 | 6.13e-14 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 144 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCACCATCTATCATTATTT+TGG | 0.052409 | 2_1:+22638220 | None:intergenic |
| ATGCACAACATAAAATATTT+TGG | 0.081186 | 2_1:+22638129 | None:intergenic |
| GCTGCAGAAGTTGGAAATTT+TGG | 0.142363 | 2_1:-22636047 | Msa0201320:three_prime_UTR |
| AATCCACATATTAGCTTTAA+AGG | 0.152207 | 2_1:+22635196 | None:intergenic |
| AGTCAACTTGAATTGGTTTC+TGG | 0.187623 | 2_1:-22635810 | Msa0201320:three_prime_UTR |
| TCCAATTGGTTAAATTTCTT+TGG | 0.210384 | 2_1:-22636151 | Msa0201320:three_prime_UTR |
| ATTAAATTTGTATTATGTTA+TGG | 0.217761 | 2_1:-22634690 | Msa0201320:three_prime_UTR |
| TTTGAATAAAACATCATTCT+TGG | 0.233931 | 2_1:-22635329 | Msa0201320:three_prime_UTR |
| GTGTTTATCCTAGCTTGATA+TGG | 0.254743 | 2_1:-22636004 | Msa0201320:three_prime_UTR |
| CATGGTTCGACGTGGGTTCC+TGG | 0.258999 | 2_1:-22635103 | Msa0201320:three_prime_UTR |
| TTAAATTTGTATTATGTTAT+GGG | 0.259336 | 2_1:-22634689 | Msa0201320:three_prime_UTR |
| CCTTTATATGCCCTATTTGA+TGG | 0.261228 | 2_1:+22635907 | None:intergenic |
| TACTCTTATTGTAATATATA+TGG | 0.274023 | 2_1:-22634732 | Msa0201320:three_prime_UTR |
| AAGAGAAGAATGCATGAAAA+AGG | 0.277740 | 2_1:+22634782 | None:intergenic |
| TTCCATCTGGTCCATCAAAT+AGG | 0.287291 | 2_1:-22635918 | Msa0201320:three_prime_UTR |
| GCGCACAGTTACCTGTAAAA+AGG | 0.290128 | 2_1:-22637365 | Msa0201320:three_prime_UTR |
| AATCGAATGCCTTTGGATTC+CGG | 0.297251 | 2_1:-22636326 | Msa0201320:three_prime_UTR |
| TCATTTACTCAACCTACTAT+TGG | 0.299582 | 2_1:-22635009 | Msa0201320:three_prime_UTR |
| CCAGGCGGTACCGATGATTC+TGG | 0.301717 | 2_1:-22635364 | Msa0201320:three_prime_UTR |
| TCTATTCTTGTCTCGCGTTA+TGG | 0.309263 | 2_1:-22635244 | Msa0201320:three_prime_UTR |
| CCTATGGACACAACGAAGTA+TGG | 0.322567 | 2_1:-22638393 | Msa0201320:exon |
| AATCCGTTGACTTTGATCTT+TGG | 0.340329 | 2_1:-22638271 | Msa0201320:CDS |
| TCCAAAGAAATTTAACCAAT+TGG | 0.347460 | 2_1:+22636150 | None:intergenic |
| GGCTCAAAATCGAATGCCTT+TGG | 0.350235 | 2_1:-22636333 | Msa0201320:three_prime_UTR |
| ACCACGAAGTCAACTTGAAT+TGG | 0.364937 | 2_1:-22635817 | Msa0201320:three_prime_UTR |
| CCATCAAATAGGGCATATAA+AGG | 0.365171 | 2_1:-22635907 | Msa0201320:three_prime_UTR |
| CTCATCTTCAAAACGATGTA+TGG | 0.380144 | 2_1:+22637263 | None:intergenic |
| TGGTGAAGATAAGAAGAATA+TGG | 0.381835 | 2_1:-22638168 | Msa0201320:CDS |
| AATAAACTCAAGAAATCAAC+GGG | 0.383405 | 2_1:-22634886 | Msa0201320:three_prime_UTR |
| ATTGTATGAATATCTTTATA+CGG | 0.392614 | 2_1:+22638291 | None:intergenic |
| GAAATTCTTCTAAGACCATC+TGG | 0.396268 | 2_1:+22638101 | None:intergenic |
| TCCATCTGGTCCATCAAATA+GGG | 0.399442 | 2_1:-22635917 | Msa0201320:three_prime_UTR |
| AACCTATGTACAAAAGTATT+GGG | 0.399981 | 2_1:+22635056 | None:intergenic |
| CTTTGGCTTGTGATTAAGAA+TGG | 0.405117 | 2_1:-22638254 | Msa0201320:CDS |
| TGTATGCCACCCATTTGTTA+TGG | 0.409339 | 2_1:+22637553 | None:intergenic |
| TGTCAAGCTCCTTGGCCGTC+TGG | 0.409685 | 2_1:+22638072 | None:intergenic |
| AGAGACAGCTTTGCATCTCT+TGG | 0.409789 | 2_1:-22636354 | Msa0201320:three_prime_UTR |
| TTGCTCTTGTAGGGAGTGGT+AGG | 0.410146 | 2_1:+22638440 | None:intergenic |
| TGTTTATCCTAGCTTGATAT+GGG | 0.418566 | 2_1:-22636003 | Msa0201320:three_prime_UTR |
| ATTCCCAAAATAATGATAGA+TGG | 0.418869 | 2_1:-22638224 | Msa0201320:CDS |
| TTTCTCATCTTTATCTGTGC+AGG | 0.420439 | 2_1:+22635538 | None:intergenic |
| TTTAGAGCATGCTCGTGAAC+GGG | 0.421346 | 2_1:+22637635 | None:intergenic |
| ATATTTGATGCTGCAGAAGT+TGG | 0.423304 | 2_1:-22636056 | Msa0201320:three_prime_UTR |
| ATGGGATTATGATCATGTTC+AGG | 0.430094 | 2_1:+22636293 | None:intergenic |
| ACTTCAGTACTTCACCAATC+CGG | 0.431391 | 2_1:+22634808 | None:intergenic |
| AAACCTATGTACAAAAGTAT+TGG | 0.433272 | 2_1:+22635055 | None:intergenic |
| TTTGTTGTACCATCGAAGTA+TGG | 0.440420 | 2_1:+22638332 | None:intergenic |
| TTTAAAGCTAATATGTGGAT+TGG | 0.447933 | 2_1:-22635194 | Msa0201320:three_prime_UTR |
| GAAGTATGGTGGCTTTGAAA+TGG | 0.449020 | 2_1:+22638346 | None:intergenic |
| TGAAATTAGCATGCAAGACT+TGG | 0.449551 | 2_1:+22635429 | None:intergenic |
| ATGTAAGGATTTACCAGGAT+TGG | 0.452846 | 2_1:+22636265 | None:intergenic |
| CAGAAACACTTTATTGCACT+TGG | 0.454500 | 2_1:-22635853 | Msa0201320:three_prime_UTR |
| GCCGACCATACCTAGGAGAT+TGG | 0.455937 | 2_1:+22634832 | None:intergenic |
| CTTCAGTACTTCACCAATCC+GGG | 0.456366 | 2_1:+22634809 | None:intergenic |
| TGCTACCATCATGCTTGTTA+CGG | 0.458985 | 2_1:+22635156 | None:intergenic |
| ATTTAACTTGTCAAGCTCCT+TGG | 0.468925 | 2_1:+22638064 | None:intergenic |
| CTTCCTTTAAAGCTAATATG+TGG | 0.469346 | 2_1:-22635199 | Msa0201320:three_prime_UTR |
| AATGATAGATGGTGAAGAAT+CGG | 0.470180 | 2_1:-22638213 | Msa0201320:CDS |
| GTTCACGAGCATGCTCTAAA+CGG | 0.470720 | 2_1:-22637632 | Msa0201320:CDS |
| TCCTAGCTTGATATGGGATG+TGG | 0.473173 | 2_1:-22635997 | Msa0201320:three_prime_UTR |
| AGGTATGGTCGGCCCCGGAT+TGG | 0.476832 | 2_1:-22634822 | Msa0201320:three_prime_UTR |
| AATCCCATCATGACCAATCC+TGG | 0.477685 | 2_1:-22636278 | Msa0201320:intron |
| ACCAATTCAAGTTGACTTCG+TGG | 0.480782 | 2_1:+22635816 | None:intergenic |
| CGTCGAGTTACCATGGTTTG+AGG | 0.483877 | 2_1:-22635769 | Msa0201320:intron |
| GCATGCTAGTATATTCCATC+TGG | 0.484064 | 2_1:-22635931 | Msa0201320:three_prime_UTR |
| TAGGTAATGATCCAAGGAAA+AGG | 0.484891 | 2_1:-22637676 | Msa0201320:CDS |
| GCTGCTGCAACTACTTTACC+AGG | 0.491983 | 2_1:-22635382 | Msa0201320:three_prime_UTR |
| TGCAAAGCAGCATACTGAAT+AGG | 0.493023 | 2_1:+22637324 | None:intergenic |
| CTCCTAGGTATGGTCGGCCC+CGG | 0.494830 | 2_1:-22634827 | Msa0201320:three_prime_UTR |
| TCTAAGATGCGCTTGGCTGC+TGG | 0.496824 | 2_1:+22637602 | None:intergenic |
| CTCTATGTCTAAGATGCGCT+TGG | 0.501048 | 2_1:+22637595 | None:intergenic |
| TGCTCTTGTAGGGAGTGGTA+GGG | 0.501072 | 2_1:+22638441 | None:intergenic |
| CCAGAATCATCGGTACCGCC+TGG | 0.502455 | 2_1:+22635364 | None:intergenic |
| AGTATGCTGCTTTGCAAGGA+AGG | 0.503678 | 2_1:-22637317 | Msa0201320:three_prime_UTR |
| AAGTCATCAACAATTTCCTA+TGG | 0.504056 | 2_1:-22638409 | Msa0201320:five_prime_UTR |
| ATGGACACAACGATCGTTGA+AGG | 0.505152 | 2_1:-22638374 | Msa0201320:CDS |
| TGAAATTGTTGACTTAATGT+TGG | 0.507791 | 2_1:-22637394 | Msa0201320:three_prime_UTR |
| ATTTCAACTGTCATTGCTAC+CGG | 0.510096 | 2_1:-22635412 | Msa0201320:three_prime_UTR |
| TAATAACGATCCAATCTCCT+AGG | 0.511436 | 2_1:-22634842 | Msa0201320:three_prime_UTR |
| AGATAGAGTACTCCAATAGT+AGG | 0.512344 | 2_1:+22634997 | None:intergenic |
| CCATACTTCGTTGTGTCCAT+AGG | 0.512794 | 2_1:+22638393 | None:intergenic |
| GTTTAGAGCATGCTCGTGAA+CGG | 0.514171 | 2_1:+22637634 | None:intergenic |
| TTGTTGACTTAATGTTGGAT+AGG | 0.518766 | 2_1:-22637389 | Msa0201320:three_prime_UTR |
| ATGTTCAGGACAATGACAAC+CGG | 0.523013 | 2_1:+22636307 | None:intergenic |
| TTTACCAGGATTGGTCATGA+TGG | 0.523830 | 2_1:+22636274 | None:intergenic |
| CATCAAATAGGGCATATAAA+GGG | 0.524642 | 2_1:-22635906 | Msa0201320:three_prime_UTR |
| TTACCAGGATTGGTCATGAT+GGG | 0.525504 | 2_1:+22636275 | None:intergenic |
| GCCCTATTTGATGGACCAGA+TGG | 0.528474 | 2_1:+22635916 | None:intergenic |
| TGTATCCACAATGGCATCTA+CGG | 0.531082 | 2_1:-22637216 | Msa0201320:intron |
| TTAATGATTTCATTTAACTC+CGG | 0.540403 | 2_1:+22636095 | None:intergenic |
| GGTTAAATTTCTTTGGACCA+TGG | 0.541884 | 2_1:-22636144 | Msa0201320:three_prime_UTR |
| TGGAGTACTCTATCTAAGCC+TGG | 0.542948 | 2_1:-22634989 | Msa0201320:three_prime_UTR |
| ACACTACTGCATATTGCTGC+AGG | 0.544223 | 2_1:-22637533 | Msa0201320:three_prime_UTR |
| GCATCAAATATTAGTTGAGA+AGG | 0.545905 | 2_1:+22636068 | None:intergenic |
| AATGTGAATTCTACACCTCT+AGG | 0.546328 | 2_1:-22637927 | Msa0201320:CDS |
| TTCAAGTTGCCAGACGGCCA+AGG | 0.547694 | 2_1:-22638081 | Msa0201320:CDS |
| ACGATCCAATCTCCTAGGTA+TGG | 0.547796 | 2_1:-22634837 | Msa0201320:three_prime_UTR |
| ATTCAGTATGCTGCTTTGCA+AGG | 0.548505 | 2_1:-22637321 | Msa0201320:three_prime_UTR |
| TTTATGTACTAGAGAAGTAG+TGG | 0.552755 | 2_1:-22634955 | Msa0201320:three_prime_UTR |
| AGTACTGCTATTTGTTACAA+AGG | 0.553032 | 2_1:+22634751 | None:intergenic |
| GTGTCGTATAGAGCTGCTGT+GGG | 0.557435 | 2_1:+22637891 | None:intergenic |
| CTAACCACATTCACTTTGTG+AGG | 0.563515 | 2_1:-22637508 | Msa0201320:three_prime_UTR |
| AAGAATTTCAAGTTGCCAGA+CGG | 0.564936 | 2_1:-22638087 | Msa0201320:CDS |
| TGTTGTGCATTAAATCCAGA+TGG | 0.578074 | 2_1:-22638116 | Msa0201320:CDS |
| TCAAAGCCACCATACTTCGA+TGG | 0.580044 | 2_1:-22638341 | Msa0201320:CDS |
| TTCTTTGCTTGTATCCACAA+TGG | 0.580760 | 2_1:-22637225 | Msa0201320:three_prime_UTR |
| TCCACATCCCATATCAAGCT+AGG | 0.582284 | 2_1:+22635996 | None:intergenic |
| TCCAATCTCCTAGGTATGGT+CGG | 0.583065 | 2_1:-22634833 | Msa0201320:three_prime_UTR |
| TACACATAGCTGTATTGCAT+CGG | 0.583100 | 2_1:-22635953 | Msa0201320:three_prime_UTR |
| AAAATGTTGCCATAACAAAT+GGG | 0.585367 | 2_1:-22637562 | Msa0201320:three_prime_UTR |
| AAATCTGAAGATGAATTCAA+TGG | 0.587897 | 2_1:-22638188 | Msa0201320:CDS |
| GAAAATATTGAAATGAAACC+AGG | 0.589569 | 2_1:+22635085 | None:intergenic |
| AACTCCTCACAAAGTGAATG+TGG | 0.593737 | 2_1:+22637504 | None:intergenic |
| TAATAAACTCAAGAAATCAA+CGG | 0.598557 | 2_1:-22634887 | Msa0201320:three_prime_UTR |
| GTCGTATAGAGCTGCTGTGG+GGG | 0.602063 | 2_1:+22637893 | None:intergenic |
| TATCTCCGTAACAAGCATGA+TGG | 0.602474 | 2_1:-22635161 | Msa0201320:three_prime_UTR |
| GTTGTACCATCGAAGTATGG+TGG | 0.603955 | 2_1:+22638335 | None:intergenic |
| AAATGTGCGTCGAGTTACCA+TGG | 0.604931 | 2_1:-22635776 | Msa0201320:three_prime_UTR |
| AGTGTCGTATAGAGCTGCTG+TGG | 0.606874 | 2_1:+22637890 | None:intergenic |
| ATAGCGTTGCAAGACATGAA+AGG | 0.608732 | 2_1:-22637456 | Msa0201320:three_prime_UTR |
| TTCTTCATAGTATACTACCA+TGG | 0.609618 | 2_1:-22635121 | Msa0201320:three_prime_UTR |
| CAGGAACCCACGTCGAACCA+TGG | 0.611714 | 2_1:+22635104 | None:intergenic |
| ATAAAGATGAGAAACTCTGA+AGG | 0.617010 | 2_1:-22635529 | Msa0201320:three_prime_UTR |
| TAAGAGAAAACGCAGAGTCG+TGG | 0.621726 | 2_1:-22635465 | Msa0201320:three_prime_UTR |
| ATTGCATGTACCTCAAACCA+TGG | 0.622315 | 2_1:+22635759 | None:intergenic |
| CAATGACAACCGGAATCCAA+AGG | 0.631658 | 2_1:+22636317 | None:intergenic |
| AAAACACTACTCATCAAAGC+CGG | 0.635811 | 2_1:-22636114 | Msa0201320:three_prime_UTR |
| TGGACACAACGATCGTTGAA+GGG | 0.640798 | 2_1:-22638373 | Msa0201320:CDS |
| AAGCCAAAGATCAAAGTCAA+CGG | 0.644107 | 2_1:+22638268 | None:intergenic |
| GTACAACAAATTGTACTGAG+TGG | 0.652782 | 2_1:-22638319 | Msa0201320:CDS |
| AAGGAAGGTGTAAAACGACA+TGG | 0.656459 | 2_1:-22637302 | Msa0201320:three_prime_UTR |
| ATCCGGGGCCGACCATACCT+AGG | 0.658154 | 2_1:+22634825 | None:intergenic |
| ACTTACCGTAGATGCCATTG+TGG | 0.660309 | 2_1:+22637211 | None:intergenic |
| TGTCGTATAGAGCTGCTGTG+GGG | 0.665831 | 2_1:+22637892 | None:intergenic |
| AGTTGCAGCAGCAAACACTC+CGG | 0.666075 | 2_1:+22635393 | None:intergenic |
| TATACTACCATGGTTCGACG+TGG | 0.679800 | 2_1:-22635111 | Msa0201320:three_prime_UTR |
| AGACAAGAAAATCAATATCG+CGG | 0.681208 | 2_1:+22635264 | None:intergenic |
| CTATGTACAAAAGTATTGGG+AGG | 0.681529 | 2_1:+22635059 | None:intergenic |
| ATGTTGCCATAACAAATGGG+TGG | 0.683420 | 2_1:-22637559 | Msa0201320:three_prime_UTR |
| TTCAGTACTTCACCAATCCG+GGG | 0.688257 | 2_1:+22634810 | None:intergenic |
| GGGGTTTGTTGTGATCCTAG+AGG | 0.701809 | 2_1:+22637912 | None:intergenic |
| ATACTACCATGGTTCGACGT+GGG | 0.703497 | 2_1:-22635110 | Msa0201320:three_prime_UTR |
| GCTGCAACTACTTTACCAGG+CGG | 0.805075 | 2_1:-22635379 | Msa0201320:three_prime_UTR |
| ATAAACTCAAGAAATCAACG+GGG | 0.867246 | 2_1:-22634885 | Msa0201320:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTTTTAATTCTTTTAAAT+TGG | - | chr2_1:22636874-22636893 | Msa0201320:intron | 10.0% |
| !! | TCAATAAAATGAATAAAAAT+GGG | + | chr2_1:22637376-22637395 | None:intergenic | 10.0% |
| !! | TATATAAATAAAACTCTTAA+TGG | - | chr2_1:22637436-22637455 | Msa0201320:three_prime_UTR | 10.0% |
| !! | ATTAAATTTGTATTATGTTA+TGG | - | chr2_1:22638415-22638434 | Msa0201320:five_prime_UTR | 10.0% |
| !! | TTAAATTTGTATTATGTTAT+GGG | - | chr2_1:22638416-22638435 | Msa0201320:five_prime_UTR | 10.0% |
| !! | ATTGTATGAATATCTTTATA+CGG | + | chr2_1:22634817-22634836 | None:intergenic | 15.0% |
| !!! | AAATATATATTTTCATTGAC+AGG | - | chr2_1:22635140-22635159 | Msa0201320:three_prime_UTR | 15.0% |
| !!! | AATATATATTTTCATTGACA+GGG | - | chr2_1:22635141-22635160 | Msa0201320:three_prime_UTR | 15.0% |
| !!! | TTAATATTTATTTTCCTTAG+AGG | + | chr2_1:22636437-22636456 | None:intergenic | 15.0% |
| !! | AAAGTATAAAAGTTAATGTA+AGG | + | chr2_1:22636858-22636877 | None:intergenic | 15.0% |
| !! | CTCAATAAAATGAATAAAAA+TGG | + | chr2_1:22637377-22637396 | None:intergenic | 15.0% |
| !!! | TAAGAGTTTTATTTATATAG+TGG | + | chr2_1:22637435-22637454 | None:intergenic | 15.0% |
| !! | TACTCTTATTGTAATATATA+TGG | - | chr2_1:22638373-22638392 | Msa0201320:CDS | 15.0% |
| !!! | ATCATTATTTTGGGAATTTT+CGG | + | chr2_1:22634878-22634897 | None:intergenic | 20.0% |
| !!! | TGCACAACATAAAATATTTT+GGG | + | chr2_1:22634978-22634997 | None:intergenic | 20.0% |
| !!! | ATGCACAACATAAAATATTT+TGG | + | chr2_1:22634979-22634998 | None:intergenic | 20.0% |
| !!! | GTAGAAGAACTTTTTTTTTT+TGG | - | chr2_1:22635311-22635330 | Msa0201320:three_prime_UTR | 20.0% |
| !!! | ATTATTATAGTCTCTGTTTT+AGG | - | chr2_1:22635410-22635429 | Msa0201320:three_prime_UTR | 20.0% |
| !! | TATTAAAACTTGAACTTGAA+AGG | + | chr2_1:22636220-22636239 | None:intergenic | 20.0% |
| !!! | AACTAATATTAGTTTCCTAT+TGG | - | chr2_1:22636470-22636489 | Msa0201320:intron | 20.0% |
| !! | TTAATGATTTCATTTAACTC+CGG | + | chr2_1:22637013-22637032 | None:intergenic | 20.0% |
| !!! | GTTTTATTTATATAGTGGAA+TGG | + | chr2_1:22637430-22637449 | None:intergenic | 20.0% |
| !! | TTTGAATAAAACATCATTCT+TGG | - | chr2_1:22637776-22637795 | Msa0201320:intron | 20.0% |
| !!! | ACATAAATCATATTTTTACC+AGG | + | chr2_1:22638137-22638156 | None:intergenic | 20.0% |
| !! | TAATAAACTCAAGAAATCAA+CGG | - | chr2_1:22638218-22638237 | Msa0201320:CDS | 20.0% |
| ! | ATTCCCAAAATAATGATAGA+TGG | - | chr2_1:22634881-22634900 | Msa0201320:three_prime_UTR | 25.0% |
| !! | TCACCATCTATCATTATTTT+GGG | + | chr2_1:22634887-22634906 | None:intergenic | 25.0% |
| !! | TTCACCATCTATCATTATTT+TGG | + | chr2_1:22634888-22634907 | None:intergenic | 25.0% |
| ! | AAATCTGAAGATGAATTCAA+TGG | - | chr2_1:22634917-22634936 | Msa0201320:three_prime_UTR | 25.0% |
| !!! | ACAAAATATTTTGAGAGAGA+AGG | + | chr2_1:22635279-22635298 | None:intergenic | 25.0% |
| ! | AAAAATGTTGCCATAACAAA+TGG | - | chr2_1:22635542-22635561 | Msa0201320:three_prime_UTR | 25.0% |
| ! | AAAATGTTGCCATAACAAAT+GGG | - | chr2_1:22635543-22635562 | Msa0201320:three_prime_UTR | 25.0% |
| !!! | TGAAATTGTTGACTTAATGT+TGG | - | chr2_1:22635711-22635730 | Msa0201320:intron | 25.0% |
| !! | TTTTGCTACATTATGCAAAT+TGG | - | chr2_1:22636016-22636035 | Msa0201320:three_prime_UTR | 25.0% |
| ! | AAATGAAGACTACAACAATT+CGG | - | chr2_1:22636092-22636111 | Msa0201320:three_prime_UTR | 25.0% |
| ! | AAAATTCTATAGTTAGAGAC+CGG | + | chr2_1:22636126-22636145 | None:intergenic | 25.0% |
| !!! | AGAATTTTGAGTAGTTCATA+TGG | - | chr2_1:22636138-22636157 | Msa0201320:three_prime_UTR | 25.0% |
| ! | AGAAAGGTTAAAAGAAAACA+AGG | - | chr2_1:22636281-22636300 | Msa0201320:three_prime_UTR | 25.0% |
| !!! | GGCAAACAATTTTTGTTTAA+AGG | - | chr2_1:22636302-22636321 | Msa0201320:three_prime_UTR | 25.0% |
| !! | TTTAAAGCTAAGTCTACAAT+TGG | + | chr2_1:22636683-22636702 | None:intergenic | 25.0% |
| !!! | TGTAGACTTAGCTTTAAAAA+TGG | - | chr2_1:22636685-22636704 | Msa0201320:intron | 25.0% |
| !! | CTTTAAAAATGGTAAGAGAT+AGG | - | chr2_1:22636696-22636715 | Msa0201320:intron | 25.0% |
| ! | TCCAATTGGTTAAATTTCTT+TGG | - | chr2_1:22636954-22636973 | Msa0201320:intron | 25.0% |
| ! | TCCAAAGAAATTTAACCAAT+TGG | + | chr2_1:22636958-22636977 | None:intergenic | 25.0% |
| !!! | GATGTTTTATTCAAATAGTG+TGG | + | chr2_1:22637771-22637790 | None:intergenic | 25.0% |
| !!! | AATCCACATATTAGCTTTAA+AGG | + | chr2_1:22637912-22637931 | None:intergenic | 25.0% |
| !! | TTTAAAGCTAATATGTGGAT+TGG | - | chr2_1:22637911-22637930 | Msa0201320:CDS | 25.0% |
| ! | GAAAATATTGAAATGAAACC+AGG | + | chr2_1:22638023-22638042 | None:intergenic | 25.0% |
| !!! | AACCTATGTACAAAAGTATT+GGG | + | chr2_1:22638052-22638071 | None:intergenic | 25.0% |
| !! | AAACCTATGTACAAAAGTAT+TGG | + | chr2_1:22638053-22638072 | None:intergenic | 25.0% |
| ! | AATAAACTCAAGAAATCAAC+GGG | - | chr2_1:22638219-22638238 | Msa0201320:CDS | 25.0% |
| !!! | TGATGTTTTTTGCTCTTGTA+GGG | + | chr2_1:22634677-22634696 | None:intergenic | 30.0% |
| !!! | TTGATGTTTTTTGCTCTTGT+AGG | + | chr2_1:22634678-22634697 | None:intergenic | 30.0% |
| AAGTCATCAACAATTTCCTA+TGG | - | chr2_1:22634696-22634715 | Msa0201320:three_prime_UTR | 30.0% | |
| AATGATAGATGGTGAAGAAT+CGG | - | chr2_1:22634892-22634911 | Msa0201320:three_prime_UTR | 30.0% | |
| TGGTGAAGATAAGAAGAATA+TGG | - | chr2_1:22634937-22634956 | Msa0201320:three_prime_UTR | 30.0% | |
| ! | TCCTAATCTTGAGTTTTTAC+AGG | - | chr2_1:22635237-22635256 | Msa0201320:three_prime_UTR | 30.0% |
| TCCTGTAAAAACTCAAGATT+AGG | + | chr2_1:22635241-22635260 | None:intergenic | 30.0% | |
| ! | GTTTTTACAGGAAACAAGTA+TGG | - | chr2_1:22635249-22635268 | Msa0201320:three_prime_UTR | 30.0% |
| !! | TTGTTGACTTAATGTTGGAT+AGG | - | chr2_1:22635716-22635735 | Msa0201320:intron | 30.0% |
| GAGAGATTGAAATTGTCAAT+CGG | - | chr2_1:22635970-22635989 | Msa0201320:three_prime_UTR | 30.0% | |
| AGTAGTTCATATGGTCTATT+GGG | - | chr2_1:22636147-22636166 | Msa0201320:three_prime_UTR | 30.0% | |
| ! | GTTTTCTTTTAACCTTTCTC+CGG | + | chr2_1:22636280-22636299 | None:intergenic | 30.0% |
| ! | TTATTTTCCTTAGAGGAGTT+TGG | + | chr2_1:22636430-22636449 | None:intergenic | 30.0% |
| TAAATATCCCATGTTGTCTA+TGG | + | chr2_1:22636617-22636636 | None:intergenic | 30.0% | |
| AGTTAATGTAAGGATTTACC+AGG | + | chr2_1:22636848-22636867 | None:intergenic | 30.0% | |
| GCATCAAATATTAGTTGAGA+AGG | + | chr2_1:22637040-22637059 | None:intergenic | 30.0% | |
| TGTTTATCCTAGCTTGATAT+GGG | - | chr2_1:22637102-22637121 | Msa0201320:intron | 30.0% | |
| CATCAAATAGGGCATATAAA+GGG | - | chr2_1:22637199-22637218 | Msa0201320:intron | 30.0% | |
| ! | TTATATTGCTATTGACACAG+TGG | + | chr2_1:22637474-22637493 | None:intergenic | 30.0% |
| ATAAAGATGAGAAACTCTGA+AGG | - | chr2_1:22637576-22637595 | Msa0201320:three_prime_UTR | 30.0% | |
| AGACAAGAAAATCAATATCG+CGG | + | chr2_1:22637844-22637863 | None:intergenic | 30.0% | |
| !! | CTTCCTTTAAAGCTAATATG+TGG | - | chr2_1:22637906-22637925 | Msa0201320:CDS | 30.0% |
| TTCTTCATAGTATACTACCA+TGG | - | chr2_1:22637984-22638003 | Msa0201320:intron | 30.0% | |
| TCATTTACTCAACCTACTAT+TGG | - | chr2_1:22638096-22638115 | Msa0201320:CDS | 30.0% | |
| TTTATGTACTAGAGAAGTAG+TGG | - | chr2_1:22638150-22638169 | Msa0201320:CDS | 30.0% | |
| ATAAACTCAAGAAATCAACG+GGG | - | chr2_1:22638220-22638239 | Msa0201320:CDS | 30.0% | |
| AGAGAAGAATGCATGAAAAA+GGG | + | chr2_1:22638325-22638344 | None:intergenic | 30.0% | |
| AAGAGAAGAATGCATGAAAA+AGG | + | chr2_1:22638326-22638345 | None:intergenic | 30.0% | |
| ! | AGTACTGCTATTTGTTACAA+AGG | + | chr2_1:22638357-22638376 | None:intergenic | 30.0% |
| ! | TTTGTTGTACCATCGAAGTA+TGG | + | chr2_1:22634776-22634795 | None:intergenic | 35.0% |
| GTACAACAAATTGTACTGAG+TGG | - | chr2_1:22634786-22634805 | Msa0201320:three_prime_UTR | 35.0% | |
| !! | AATCCGTTGACTTTGATCTT+TGG | - | chr2_1:22634834-22634853 | Msa0201320:three_prime_UTR | 35.0% |
| AAGCCAAAGATCAAAGTCAA+CGG | + | chr2_1:22634840-22634859 | None:intergenic | 35.0% | |
| !! | CTTTGGCTTGTGATTAAGAA+TGG | - | chr2_1:22634851-22634870 | Msa0201320:three_prime_UTR | 35.0% |
| TGTTGTGCATTAAATCCAGA+TGG | - | chr2_1:22634989-22635008 | Msa0201320:three_prime_UTR | 35.0% | |
| !! | GAAATTCTTCTAAGACCATC+TGG | + | chr2_1:22635007-22635026 | None:intergenic | 35.0% |
| !! | AAGAATTTCAAGTTGCCAGA+CGG | - | chr2_1:22635018-22635037 | Msa0201320:three_prime_UTR | 35.0% |
| !! | ATTTAACTTGTCAAGCTCCT+TGG | + | chr2_1:22635044-22635063 | None:intergenic | 35.0% |
| AATGTGAATTCTACACCTCT+AGG | - | chr2_1:22635178-22635197 | Msa0201320:three_prime_UTR | 35.0% | |
| !! | CTGTTTTAGGTAATGATCCA+AGG | - | chr2_1:22635423-22635442 | Msa0201320:three_prime_UTR | 35.0% |
| TAGGTAATGATCCAAGGAAA+AGG | - | chr2_1:22635429-22635448 | Msa0201320:three_prime_UTR | 35.0% | |
| CTCATCTTCAAAACGATGTA+TGG | + | chr2_1:22635845-22635864 | None:intergenic | 35.0% | |
| !!! | CATACATCGTTTTGAAGATG+AGG | - | chr2_1:22635843-22635862 | Msa0201320:three_prime_UTR | 35.0% |
| TTCTTTGCTTGTATCCACAA+TGG | - | chr2_1:22635880-22635899 | Msa0201320:three_prime_UTR | 35.0% | |
| CAACAATTCGGTAACTAAAC+CGG | - | chr2_1:22636104-22636123 | Msa0201320:three_prime_UTR | 35.0% | |
| GAGTAGTTCATATGGTCTAT+TGG | - | chr2_1:22636146-22636165 | Msa0201320:three_prime_UTR | 35.0% | |
| GGGCAAAACTGCTTAAAAAA+AGG | - | chr2_1:22636167-22636186 | Msa0201320:three_prime_UTR | 35.0% | |
| TGAGCTAAATGTTAAGGAGT+TGG | + | chr2_1:22636393-22636412 | None:intergenic | 35.0% | |
| ! | CTGGTTTGAGCTAAATGTTA+AGG | + | chr2_1:22636399-22636418 | None:intergenic | 35.0% |
| AGCTGAAACAGTGATCTAAT+CGG | + | chr2_1:22636512-22636531 | None:intergenic | 35.0% | |
| AGATCACTGTTTCAGCTATA+AGG | - | chr2_1:22636515-22636534 | Msa0201320:intron | 35.0% | |
| TTTCAGCTATAAGGAAGTTG+AGG | - | chr2_1:22636524-22636543 | Msa0201320:intron | 35.0% | |
| GGAAGTTGAGGTCTATTTAA+AGG | - | chr2_1:22636536-22636555 | Msa0201320:intron | 35.0% | |
| AGTTGAGGTCTATTTAAAGG+TGG | - | chr2_1:22636539-22636558 | Msa0201320:intron | 35.0% | |
| ! | CAGTTGTCTTCTAAGTTTTG+AGG | - | chr2_1:22636568-22636587 | Msa0201320:intron | 35.0% |
| ATGGGATTATGATCATGTTC+AGG | + | chr2_1:22636815-22636834 | None:intergenic | 35.0% | |
| ATGTAAGGATTTACCAGGAT+TGG | + | chr2_1:22636843-22636862 | None:intergenic | 35.0% | |
| GTAACCATATCACTTATTGC+AGG | - | chr2_1:22636911-22636930 | Msa0201320:intron | 35.0% | |
| ! | AAATCACGTGGTTTTCCAAT+TGG | - | chr2_1:22636940-22636959 | Msa0201320:intron | 35.0% |
| GGTTAAATTTCTTTGGACCA+TGG | - | chr2_1:22636961-22636980 | Msa0201320:intron | 35.0% | |
| !!! | GTAGTGTTTTTCAAGAACCA+TGG | + | chr2_1:22636981-22637000 | None:intergenic | 35.0% |
| AAAACACTACTCATCAAAGC+CGG | - | chr2_1:22636991-22637010 | Msa0201320:intron | 35.0% | |
| ATATTTGATGCTGCAGAAGT+TGG | - | chr2_1:22637049-22637068 | Msa0201320:intron | 35.0% | |
| GTGTTTATCCTAGCTTGATA+TGG | - | chr2_1:22637101-22637120 | Msa0201320:intron | 35.0% | |
| TACACATAGCTGTATTGCAT+CGG | - | chr2_1:22637152-22637171 | Msa0201320:intron | 35.0% | |
| CCTTTATATGCCCTATTTGA+TGG | + | chr2_1:22637201-22637220 | None:intergenic | 35.0% | |
| CCATCAAATAGGGCATATAA+AGG | - | chr2_1:22637198-22637217 | Msa0201320:intron | 35.0% | |
| CAGAAACACTTTATTGCACT+TGG | - | chr2_1:22637252-22637271 | Msa0201320:three_prime_UTR | 35.0% | |
| ! | AGTCAACTTGAATTGGTTTC+TGG | - | chr2_1:22637295-22637314 | Msa0201320:three_prime_UTR | 35.0% |
| ! | TATAGTGGAATGGATAAGAG+TGG | + | chr2_1:22637420-22637439 | None:intergenic | 35.0% |
| TTTCTCATCTTTATCTGTGC+AGG | + | chr2_1:22637570-22637589 | None:intergenic | 35.0% | |
| TGAAATTAGCATGCAAGACT+TGG | + | chr2_1:22637679-22637698 | None:intergenic | 35.0% | |
| ATTTCAACTGTCATTGCTAC+CGG | - | chr2_1:22637693-22637712 | Msa0201320:intron | 35.0% | |
| !! | CTATGTACAAAAGTATTGGG+AGG | + | chr2_1:22638049-22638068 | None:intergenic | 35.0% |
| ! | CTCCCAATACTTTTGTACAT+AGG | - | chr2_1:22638047-22638066 | Msa0201320:intron | 35.0% |
| ! | AGATAGAGTACTCCAATAGT+AGG | + | chr2_1:22638111-22638130 | None:intergenic | 35.0% |
| TAATAACGATCCAATCTCCT+AGG | - | chr2_1:22638263-22638282 | Msa0201320:CDS | 35.0% | |
| !!! | TTTTTTGCTCTTGTAGGGAG+TGG | + | chr2_1:22634672-22634691 | None:intergenic | 40.0% |
| !! | GAAGTATGGTGGCTTTGAAA+TGG | + | chr2_1:22634762-22634781 | None:intergenic | 40.0% |
| ! | AGCTTGAGAAACCTTTTCCT+TGG | + | chr2_1:22635443-22635462 | None:intergenic | 40.0% |
| ATGTTGCCATAACAAATGGG+TGG | - | chr2_1:22635546-22635565 | Msa0201320:three_prime_UTR | 40.0% | |
| ! | TGTATGCCACCCATTTGTTA+TGG | + | chr2_1:22635555-22635574 | None:intergenic | 40.0% |
| CTAACCACATTCACTTTGTG+AGG | - | chr2_1:22635597-22635616 | Msa0201320:intron | 40.0% | |
| AACTCCTCACAAAGTGAATG+TGG | + | chr2_1:22635604-22635623 | None:intergenic | 40.0% | |
| ATAGCGTTGCAAGACATGAA+AGG | - | chr2_1:22635649-22635668 | Msa0201320:intron | 40.0% | |
| CGCACAGTTACCTGTAAAAA+GGG | - | chr2_1:22635741-22635760 | Msa0201320:intron | 40.0% | |
| GCACAGTTACCTGTAAAAAG+GGG | - | chr2_1:22635742-22635761 | Msa0201320:intron | 40.0% | |
| TGCAAAGCAGCATACTGAAT+AGG | + | chr2_1:22635784-22635803 | None:intergenic | 40.0% | |
| !! | ATTCAGTATGCTGCTTTGCA+AGG | - | chr2_1:22635784-22635803 | Msa0201320:three_prime_UTR | 40.0% |
| ! | AAGGAAGGTGTAAAACGACA+TGG | - | chr2_1:22635803-22635822 | Msa0201320:three_prime_UTR | 40.0% |
| !!! | ATCGTTTTGAAGATGAGGAC+TGG | - | chr2_1:22635848-22635867 | Msa0201320:three_prime_UTR | 40.0% |
| !!! | TCGTTTTGAAGATGAGGACT+GGG | - | chr2_1:22635849-22635868 | Msa0201320:three_prime_UTR | 40.0% |
| TGTATCCACAATGGCATCTA+CGG | - | chr2_1:22635889-22635908 | Msa0201320:three_prime_UTR | 40.0% | |
| TAACCTTTCTCCGGTCAATT+GGG | + | chr2_1:22636271-22636290 | None:intergenic | 40.0% | |
| TTAACCTTTCTCCGGTCAAT+TGG | + | chr2_1:22636272-22636291 | None:intergenic | 40.0% | |
| !! | GGAGGTACTAAGTTCAAACT+CGG | + | chr2_1:22636372-22636391 | None:intergenic | 40.0% |
| GCTAAATGTTAAGGAGTTGG+AGG | + | chr2_1:22636390-22636409 | None:intergenic | 40.0% | |
| ATATCCCATGTTGTCTATGG+TGG | + | chr2_1:22636614-22636633 | None:intergenic | 40.0% | |
| AATCGAATGCCTTTGGATTC+CGG | - | chr2_1:22636779-22636798 | Msa0201320:intron | 40.0% | |
| ATGTTCAGGACAATGACAAC+CGG | + | chr2_1:22636801-22636820 | None:intergenic | 40.0% | |
| !! | TTACCAGGATTGGTCATGAT+GGG | + | chr2_1:22636833-22636852 | None:intergenic | 40.0% |
| !! | TTTACCAGGATTGGTCATGA+TGG | + | chr2_1:22636834-22636853 | None:intergenic | 40.0% |
| CATGCCTGCAATAAGTGATA+TGG | + | chr2_1:22636918-22636937 | None:intergenic | 40.0% | |
| ! | GCTGCAGAAGTTGGAAATTT+TGG | - | chr2_1:22637058-22637077 | Msa0201320:intron | 40.0% |
| GCATGCTAGTATATTCCATC+TGG | - | chr2_1:22637174-22637193 | Msa0201320:intron | 40.0% | |
| TTCCATCTGGTCCATCAAAT+AGG | - | chr2_1:22637187-22637206 | Msa0201320:intron | 40.0% | |
| TCCATCTGGTCCATCAAATA+GGG | - | chr2_1:22637188-22637207 | Msa0201320:intron | 40.0% | |
| ACCACGAAGTCAACTTGAAT+TGG | - | chr2_1:22637288-22637307 | Msa0201320:three_prime_UTR | 40.0% | |
| !! | ACCAATTCAAGTTGACTTCG+TGG | + | chr2_1:22637292-22637311 | None:intergenic | 40.0% |
| ATTGCATGTACCTCAAACCA+TGG | + | chr2_1:22637349-22637368 | None:intergenic | 40.0% | |
| ! | GTGTGGTTTTCCAGAATCAT+CGG | + | chr2_1:22637754-22637773 | None:intergenic | 40.0% |
| TCTATTCTTGTCTCGCGTTA+TGG | - | chr2_1:22637861-22637880 | Msa0201320:intron | 40.0% | |
| TATCTCCGTAACAAGCATGA+TGG | - | chr2_1:22637944-22637963 | Msa0201320:CDS | 40.0% | |
| ! | TGCTACCATCATGCTTGTTA+CGG | + | chr2_1:22637952-22637971 | None:intergenic | 40.0% |
| ACTTCAGTACTTCACCAATC+CGG | + | chr2_1:22638300-22638319 | None:intergenic | 40.0% | |
| CCATACTTCGTTGTGTCCAT+AGG | + | chr2_1:22634715-22634734 | None:intergenic | 45.0% | |
| CCTATGGACACAACGAAGTA+TGG | - | chr2_1:22634712-22634731 | Msa0201320:three_prime_UTR | 45.0% | |
| ATGGACACAACGATCGTTGA+AGG | - | chr2_1:22634731-22634750 | Msa0201320:three_prime_UTR | 45.0% | |
| TGGACACAACGATCGTTGAA+GGG | - | chr2_1:22634732-22634751 | Msa0201320:three_prime_UTR | 45.0% | |
| TCAAAGCCACCATACTTCGA+TGG | - | chr2_1:22634764-22634783 | Msa0201320:three_prime_UTR | 45.0% | |
| GTTGTACCATCGAAGTATGG+TGG | + | chr2_1:22634773-22634792 | None:intergenic | 45.0% | |
| ! | GAGCAGATATGCTACTTGCT+TGG | + | chr2_1:22635362-22635381 | None:intergenic | 45.0% |
| ! | TTTAGAGCATGCTCGTGAAC+GGG | + | chr2_1:22635473-22635492 | None:intergenic | 45.0% |
| ! | GTTTAGAGCATGCTCGTGAA+CGG | + | chr2_1:22635474-22635493 | None:intergenic | 45.0% |
| ! | GTTCACGAGCATGCTCTAAA+CGG | - | chr2_1:22635473-22635492 | Msa0201320:three_prime_UTR | 45.0% |
| ! | CTCTATGTCTAAGATGCGCT+TGG | + | chr2_1:22635513-22635532 | None:intergenic | 45.0% |
| ACACTACTGCATATTGCTGC+AGG | - | chr2_1:22635572-22635591 | Msa0201320:intron | 45.0% | |
| GCGCACAGTTACCTGTAAAA+AGG | - | chr2_1:22635740-22635759 | Msa0201320:intron | 45.0% | |
| CAGTTACCTGTAAAAAGGGG+TGG | - | chr2_1:22635745-22635764 | Msa0201320:intron | 45.0% | |
| ! | CCTTTTCCACCCCTTTTTAC+AGG | + | chr2_1:22635754-22635773 | None:intergenic | 45.0% |
| CCTGTAAAAAGGGGTGGAAA+AGG | - | chr2_1:22635751-22635770 | Msa0201320:intron | 45.0% | |
| !! | AGTATGCTGCTTTGCAAGGA+AGG | - | chr2_1:22635788-22635807 | Msa0201320:three_prime_UTR | 45.0% |
| ACTTACCGTAGATGCCATTG+TGG | + | chr2_1:22635897-22635916 | None:intergenic | 45.0% | |
| ! | GAGAGACTGATTTAGCGACT+AGG | - | chr2_1:22636068-22636087 | Msa0201320:three_prime_UTR | 45.0% |
| TGAGCTACCAAACTCCTCTA+AGG | - | chr2_1:22636420-22636439 | Msa0201320:intron | 45.0% | |
| GTTGAGTGGACAAAGCCAAT+AGG | + | chr2_1:22636488-22636507 | None:intergenic | 45.0% | |
| !! | GTGATCTAATCGGTGTTGAG+TGG | + | chr2_1:22636502-22636521 | None:intergenic | 45.0% |
| TTGGTCCACCATAGACAACA+TGG | - | chr2_1:22636606-22636625 | Msa0201320:intron | 45.0% | |
| TGGTCCACCATAGACAACAT+GGG | - | chr2_1:22636607-22636626 | Msa0201320:intron | 45.0% | |
| AGAGACAGCTTTGCATCTCT+TGG | - | chr2_1:22636751-22636770 | Msa0201320:intron | 45.0% | |
| GGCTCAAAATCGAATGCCTT+TGG | - | chr2_1:22636772-22636791 | Msa0201320:intron | 45.0% | |
| CAATGACAACCGGAATCCAA+AGG | + | chr2_1:22636791-22636810 | None:intergenic | 45.0% | |
| AATCCCATCATGACCAATCC+TGG | - | chr2_1:22636827-22636846 | Msa0201320:intron | 45.0% | |
| TGCAGGCATGAAAAATCACG+TGG | - | chr2_1:22636928-22636947 | Msa0201320:intron | 45.0% | |
| TCCTAGCTTGATATGGGATG+TGG | - | chr2_1:22637108-22637127 | Msa0201320:intron | 45.0% | |
| TCCACATCCCATATCAAGCT+AGG | + | chr2_1:22637112-22637131 | None:intergenic | 45.0% | |
| AAATGTGCGTCGAGTTACCA+TGG | - | chr2_1:22637329-22637348 | Msa0201320:three_prime_UTR | 45.0% | |
| TAAGAGAAAACGCAGAGTCG+TGG | - | chr2_1:22637640-22637659 | Msa0201320:CDS | 45.0% | |
| TATACTACCATGGTTCGACG+TGG | - | chr2_1:22637994-22638013 | Msa0201320:intron | 45.0% | |
| ATACTACCATGGTTCGACGT+GGG | - | chr2_1:22637995-22638014 | Msa0201320:intron | 45.0% | |
| ! | TGGAGTACTCTATCTAAGCC+TGG | - | chr2_1:22638116-22638135 | Msa0201320:CDS | 45.0% |
| ACGATCCAATCTCCTAGGTA+TGG | - | chr2_1:22638268-22638287 | Msa0201320:CDS | 45.0% | |
| TCCAATCTCCTAGGTATGGT+CGG | - | chr2_1:22638272-22638291 | Msa0201320:CDS | 45.0% | |
| TTCAGTACTTCACCAATCCG+GGG | + | chr2_1:22638298-22638317 | None:intergenic | 45.0% | |
| CTTCAGTACTTCACCAATCC+GGG | + | chr2_1:22638299-22638318 | None:intergenic | 45.0% | |
| !!! | AATATTTTGTATTTATTTTT+TGG | - | chr2_1:22635289-22635308 | Msa0201320:three_prime_UTR | 5.0% |
| TGCTCTTGTAGGGAGTGGTA+GGG | + | chr2_1:22634667-22634686 | None:intergenic | 50.0% | |
| TTGCTCTTGTAGGGAGTGGT+AGG | + | chr2_1:22634668-22634687 | None:intergenic | 50.0% | |
| !! | GGGGTTTGTTGTGATCCTAG+AGG | + | chr2_1:22635196-22635215 | None:intergenic | 50.0% |
| TGTCGTATAGAGCTGCTGTG+GGG | + | chr2_1:22635216-22635235 | None:intergenic | 50.0% | |
| GTGTCGTATAGAGCTGCTGT+GGG | + | chr2_1:22635217-22635236 | None:intergenic | 50.0% | |
| AGTGTCGTATAGAGCTGCTG+TGG | + | chr2_1:22635218-22635237 | None:intergenic | 50.0% | |
| ! | TTTTGCTTTGCTGCTGCAGC+TGG | - | chr2_1:22635682-22635701 | Msa0201320:intron | 50.0% |
| GAGACAGTAGCCCAATTGAC+CGG | - | chr2_1:22636258-22636277 | Msa0201320:intron | 50.0% | |
| TAGCCCAATTGACCGGAGAA+AGG | - | chr2_1:22636265-22636284 | Msa0201320:intron | 50.0% | |
| ! | GAGGAGTTTGGTAGCTCAAC+TGG | + | chr2_1:22636418-22636437 | None:intergenic | 50.0% |
| ! | GAGGTACTTGCCATCATCGT+TGG | - | chr2_1:22636587-22636606 | Msa0201320:intron | 50.0% |
| !! | CTATGGTGGACCAACGATGA+TGG | + | chr2_1:22636600-22636619 | None:intergenic | 50.0% |
| ! | GCCCTATTTGATGGACCAGA+TGG | + | chr2_1:22637192-22637211 | None:intergenic | 50.0% |
| CGTCGAGTTACCATGGTTTG+AGG | - | chr2_1:22637336-22637355 | Msa0201320:three_prime_UTR | 50.0% | |
| AGTTGCAGCAGCAAACACTC+CGG | + | chr2_1:22637715-22637734 | None:intergenic | 50.0% | |
| GCTGCTGCAACTACTTTACC+AGG | - | chr2_1:22637723-22637742 | Msa0201320:intron | 50.0% | |
| GCTGCAACTACTTTACCAGG+CGG | - | chr2_1:22637726-22637745 | Msa0201320:intron | 50.0% | |
| !! | TTCAAGTTGCCAGACGGCCA+AGG | - | chr2_1:22635024-22635043 | Msa0201320:three_prime_UTR | 55.0% |
| GTCGTATAGAGCTGCTGTGG+GGG | + | chr2_1:22635215-22635234 | None:intergenic | 55.0% | |
| ! | TCTAAGATGCGCTTGGCTGC+TGG | + | chr2_1:22635506-22635525 | None:intergenic | 55.0% |
| GCCGACCATACCTAGGAGAT+TGG | + | chr2_1:22638276-22638295 | None:intergenic | 55.0% | |
| TGTCAAGCTCCTTGGCCGTC+TGG | + | chr2_1:22635036-22635055 | None:intergenic | 60.0% | |
| CCAGAATCATCGGTACCGCC+TGG | + | chr2_1:22637744-22637763 | None:intergenic | 60.0% | |
| !! | CCAGGCGGTACCGATGATTC+TGG | - | chr2_1:22637741-22637760 | Msa0201320:intron | 60.0% |
| CAGGAACCCACGTCGAACCA+TGG | + | chr2_1:22638004-22638023 | None:intergenic | 60.0% | |
| CATGGTTCGACGTGGGTTCC+TGG | - | chr2_1:22638002-22638021 | Msa0201320:intron | 60.0% | |
| CTCCTAGGTATGGTCGGCCC+CGG | - | chr2_1:22638278-22638297 | Msa0201320:CDS | 65.0% | |
| ATCCGGGGCCGACCATACCT+AGG | + | chr2_1:22638283-22638302 | None:intergenic | 65.0% | |
| AGGTATGGTCGGCCCCGGAT+TGG | - | chr2_1:22638283-22638302 | Msa0201320:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 22634662 | 22638465 | 22634662 | ID=Msa0201320;Name=Msa0201320 |
| chr2_1 | mRNA | 22634662 | 22638465 | 22634662 | ID=Msa0201320-mRNA-1;Parent=Msa0201320;Name=Msa0201320-mRNA-1;_AED=0.04;_eAED=0.04;_QI=69|1|1|1|1|0.83|6|1912|166 |
| chr2_1 | exon | 22634662 | 22635581 | 22634662 | ID=Msa0201320-mRNA-1:exon:8917;Parent=Msa0201320-mRNA-1 |
| chr2_1 | exon | 22635770 | 22636194 | 22635770 | ID=Msa0201320-mRNA-1:exon:8916;Parent=Msa0201320-mRNA-1 |
| chr2_1 | exon | 22636279 | 22636437 | 22636279 | ID=Msa0201320-mRNA-1:exon:8915;Parent=Msa0201320-mRNA-1 |
| chr2_1 | exon | 22637217 | 22637695 | 22637217 | ID=Msa0201320-mRNA-1:exon:8914;Parent=Msa0201320-mRNA-1 |
| chr2_1 | exon | 22637862 | 22637965 | 22637862 | ID=Msa0201320-mRNA-1:exon:8913;Parent=Msa0201320-mRNA-1 |
| chr2_1 | exon | 22638071 | 22638465 | 22638071 | ID=Msa0201320-mRNA-1:exon:8912;Parent=Msa0201320-mRNA-1 |
| chr2_1 | five_prime_UTR | 22638397 | 22638465 | 22638397 | ID=Msa0201320-mRNA-1:five_prime_utr;Parent=Msa0201320-mRNA-1 |
| chr2_1 | CDS | 22638071 | 22638396 | 22638071 | ID=Msa0201320-mRNA-1:cds;Parent=Msa0201320-mRNA-1 |
| chr2_1 | CDS | 22637862 | 22637965 | 22637862 | ID=Msa0201320-mRNA-1:cds;Parent=Msa0201320-mRNA-1 |
| chr2_1 | CDS | 22637625 | 22637695 | 22637625 | ID=Msa0201320-mRNA-1:cds;Parent=Msa0201320-mRNA-1 |
| chr2_1 | three_prime_UTR | 22637217 | 22637624 | 22637217 | ID=Msa0201320-mRNA-1:three_prime_utr;Parent=Msa0201320-mRNA-1 |
| chr2_1 | three_prime_UTR | 22636279 | 22636437 | 22636279 | ID=Msa0201320-mRNA-1:three_prime_utr;Parent=Msa0201320-mRNA-1 |
| chr2_1 | three_prime_UTR | 22635770 | 22636194 | 22635770 | ID=Msa0201320-mRNA-1:three_prime_utr;Parent=Msa0201320-mRNA-1 |
| chr2_1 | three_prime_UTR | 22634662 | 22635581 | 22634662 | ID=Msa0201320-mRNA-1:three_prime_utr;Parent=Msa0201320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
