Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0282580 | KEH37406.1 | 93.079 | 708 | 49 | 0 | 1 | 708 | 1 | 708 | 0.0 | 1375 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0282580 | A0A072V720 | 93.079 | 708 | 49 | 0 | 1 | 708 | 1 | 708 | 0.0 | 1375 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0201320 | Msa0282580 | 0.869255 | 3.549900e-66 | -8.615850e-47 |
Msa0201340 | Msa0282580 | 0.844344 | 8.012155e-59 | -8.615850e-47 |
Msa0201360 | Msa0282580 | 0.802416 | 5.668646e-49 | -8.615850e-47 |
Msa0243900 | Msa0282580 | 0.919964 | 2.327337e-87 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0282580 | MtrunA17_Chr2g0297681 | 93.079 | 708 | 49 | 0 | 1 | 708 | 1 | 708 | 0.0 | 1371 |
Msa0282580 | MtrunA17_Chr2g0297691 | 89.859 | 710 | 70 | 2 | 1 | 708 | 1 | 710 | 0.0 | 1318 |
Msa0282580 | MtrunA17_Chr2g0297651 | 86.338 | 710 | 94 | 2 | 1 | 708 | 1 | 709 | 0.0 | 1270 |
Msa0282580 | MtrunA17_Chr2g0297481 | 83.838 | 495 | 75 | 2 | 214 | 708 | 1 | 490 | 0.0 | 847 |
Msa0282580 | MtrunA17_Chr2g0297491 | 82.620 | 397 | 68 | 1 | 312 | 708 | 1 | 396 | 0.0 | 677 |
Msa0282580 | MtrunA17_Chr2g0297701 | 51.031 | 582 | 271 | 7 | 126 | 703 | 12 | 583 | 0.0 | 585 |
Msa0282580 | MtrunA17_Chr2g0297631 | 74.722 | 360 | 75 | 5 | 1 | 350 | 1 | 354 | 1.55e-173 | 520 |
Msa0282580 | MtrunA17_Chr2g0297711 | 45.504 | 556 | 244 | 6 | 151 | 703 | 41 | 540 | 7.81e-163 | 480 |
Msa0282580 | MtrunA17_Chr2g0297531 | 79.902 | 204 | 40 | 1 | 214 | 417 | 1 | 203 | 4.70e-115 | 344 |
Msa0282580 | MtrunA17_Chr2g0297541 | 68.947 | 190 | 48 | 1 | 1 | 179 | 1 | 190 | 2.16e-87 | 272 |
Msa0282580 | MtrunA17_Chr5g0410171 | 29.018 | 703 | 376 | 20 | 76 | 689 | 63 | 731 | 9.66e-69 | 239 |
Msa0282580 | MtrunA17_Chr5g0443001 | 31.196 | 577 | 344 | 11 | 160 | 690 | 33 | 602 | 3.13e-67 | 232 |
Msa0282580 | MtrunA17_Chr2g0297621 | 82.927 | 123 | 20 | 1 | 361 | 483 | 1 | 122 | 1.12e-64 | 210 |
Msa0282580 | MtrunA17_Chr5g0410201 | 38.806 | 335 | 195 | 6 | 361 | 692 | 1 | 328 | 6.09e-61 | 207 |
Msa0282580 | MtrunA17_Chr5g0410271 | 39.796 | 294 | 172 | 4 | 399 | 689 | 33 | 324 | 1.69e-58 | 201 |
Msa0282580 | MtrunA17_Chr6g0457101 | 28.947 | 646 | 374 | 20 | 94 | 688 | 73 | 684 | 2.55e-56 | 204 |
Msa0282580 | MtrunA17_Chr6g0456141 | 35.562 | 329 | 204 | 5 | 361 | 688 | 59 | 380 | 2.84e-51 | 183 |
Msa0282580 | MtrunA17_Chr5g0410341 | 36.735 | 294 | 181 | 4 | 399 | 689 | 452 | 743 | 8.89e-51 | 189 |
Msa0282580 | MtrunA17_Chr5g0410341 | 25.231 | 325 | 187 | 13 | 36 | 340 | 33 | 321 | 4.76e-11 | 66.2 |
Msa0282580 | MtrunA17_Chr3g0100741 | 25.719 | 556 | 375 | 9 | 159 | 679 | 34 | 586 | 1.23e-47 | 177 |
Msa0282580 | MtrunA17_Chr5g0410461 | 38.462 | 299 | 178 | 3 | 397 | 690 | 166 | 463 | 1.24e-47 | 175 |
Msa0282580 | MtrunA17_Chr5g0410371 | 38.176 | 296 | 172 | 5 | 402 | 690 | 4 | 295 | 1.39e-47 | 170 |
Msa0282580 | MtrunA17_Chr3g0100301 | 30.512 | 449 | 252 | 14 | 246 | 686 | 11 | 407 | 6.48e-47 | 171 |
Msa0282580 | MtrunA17_Chr6g0456101 | 35.061 | 328 | 206 | 5 | 362 | 688 | 416 | 737 | 9.03e-46 | 174 |
Msa0282580 | MtrunA17_Chr2g0297501 | 78.495 | 93 | 20 | 0 | 214 | 306 | 1 | 93 | 3.79e-45 | 156 |
Msa0282580 | MtrunA17_Chr2g0297521 | 84.706 | 85 | 13 | 0 | 493 | 577 | 1 | 85 | 5.62e-44 | 152 |
Msa0282580 | MtrunA17_Chr3g0096941 | 24.954 | 549 | 373 | 11 | 159 | 671 | 34 | 579 | 4.93e-42 | 161 |
Msa0282580 | MtrunA17_Chr2g0297611 | 81.928 | 83 | 15 | 0 | 507 | 589 | 1 | 83 | 1.39e-41 | 146 |
Msa0282580 | MtrunA17_Chr2g0286601 | 34.286 | 315 | 190 | 7 | 389 | 690 | 378 | 688 | 1.55e-41 | 161 |
Msa0282580 | MtrunA17_Chr1g0211541 | 25.187 | 536 | 357 | 11 | 165 | 690 | 3 | 504 | 1.61e-41 | 159 |
Msa0282580 | MtrunA17_Chr5g0410581 | 33.106 | 293 | 191 | 2 | 402 | 689 | 502 | 794 | 2.76e-41 | 161 |
Msa0282580 | MtrunA17_Chr1g0211531 | 25.865 | 549 | 354 | 12 | 161 | 695 | 23 | 532 | 2.49e-40 | 155 |
Msa0282580 | MtrunA17_Chr5g0439061 | 35.517 | 290 | 180 | 3 | 402 | 686 | 440 | 727 | 2.46e-39 | 155 |
Msa0282580 | MtrunA17_Chr3g0098481 | 32.237 | 304 | 195 | 6 | 402 | 698 | 39 | 338 | 2.53e-39 | 148 |
Msa0282580 | MtrunA17_Chr2g0286551 | 35.333 | 300 | 184 | 5 | 399 | 690 | 370 | 667 | 1.61e-38 | 152 |
Msa0282580 | MtrunA17_Chr3g0098531 | 32.616 | 279 | 168 | 8 | 420 | 686 | 10 | 280 | 1.37e-35 | 136 |
Msa0282580 | MtrunA17_Chr2g0284501 | 34.572 | 269 | 163 | 4 | 418 | 682 | 388 | 647 | 1.52e-35 | 143 |
Msa0282580 | MtrunA17_Chr5g0410191 | 39.474 | 190 | 113 | 2 | 501 | 689 | 2 | 190 | 1.36e-34 | 130 |
Msa0282580 | MtrunA17_Chr2g0297511 | 74.324 | 74 | 19 | 0 | 5 | 78 | 1 | 74 | 5.22e-34 | 124 |
Msa0282580 | MtrunA17_Chr3g0102001 | 33.221 | 298 | 187 | 7 | 399 | 688 | 441 | 734 | 1.50e-32 | 134 |
Msa0282580 | MtrunA17_Chr3g0098301 | 29.553 | 291 | 196 | 4 | 402 | 685 | 105 | 393 | 4.81e-31 | 126 |
Msa0282580 | MtrunA17_Chr2g0284541 | 34.397 | 282 | 176 | 4 | 402 | 682 | 356 | 629 | 6.81e-31 | 129 |
Msa0282580 | MtrunA17_Chr5g0439081 | 33.880 | 183 | 119 | 2 | 501 | 682 | 15 | 196 | 1.42e-27 | 111 |
Msa0282580 | MtrunA17_Chr5g0439051 | 38.743 | 191 | 112 | 3 | 501 | 688 | 19 | 207 | 1.50e-26 | 108 |
Msa0282580 | MtrunA17_Chr5g0410541 | 34.359 | 195 | 120 | 3 | 501 | 689 | 23 | 215 | 9.37e-26 | 105 |
Msa0282580 | MtrunA17_Chr5g0410181 | 41.667 | 132 | 75 | 2 | 559 | 689 | 1 | 131 | 1.64e-24 | 99.8 |
Msa0282580 | MtrunA17_Chr2g0286561 | 31.683 | 202 | 125 | 5 | 500 | 690 | 14 | 213 | 7.27e-24 | 100 |
Msa0282580 | MtrunA17_Chr5g0410451 | 36.735 | 147 | 92 | 1 | 499 | 644 | 39 | 185 | 4.86e-23 | 99.0 |
Msa0282580 | MtrunA17_Chr5g0410511 | 32.308 | 195 | 123 | 4 | 501 | 688 | 2 | 194 | 1.10e-20 | 90.9 |
Msa0282580 | MtrunA17_Chr1g0211511 | 24.775 | 222 | 155 | 5 | 394 | 610 | 12 | 226 | 5.13e-15 | 77.0 |
Msa0282580 | MtrunA17_Chr8g0356571 | 31.250 | 112 | 75 | 1 | 1 | 110 | 1 | 112 | 1.82e-13 | 69.3 |
Msa0282580 | MtrunA17_Chr0c01g0489151 | 32.075 | 106 | 69 | 1 | 5 | 110 | 7 | 109 | 7.92e-13 | 69.3 |
Msa0282580 | MtrunA17_Chr3g0100921 | 31.061 | 132 | 90 | 1 | 549 | 679 | 1 | 132 | 1.16e-12 | 65.9 |
Msa0282580 | MtrunA17_Chr7g0224661 | 32.075 | 106 | 69 | 1 | 5 | 110 | 7 | 109 | 5.42e-12 | 68.2 |
Msa0282580 | MtrunA17_Chr3g0108461 | 32.632 | 95 | 62 | 1 | 5 | 97 | 7 | 101 | 6.61e-11 | 59.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0282580 | AT3G18670.1 | 30.153 | 587 | 382 | 8 | 129 | 700 | 21 | 594 | 2.71e-80 | 268 |
Msa0282580 | AT3G18670.2 | 29.199 | 637 | 378 | 10 | 129 | 700 | 21 | 649 | 4.69e-80 | 268 |
Msa0282580 | AT5G35810.1 | 40.923 | 325 | 186 | 1 | 387 | 705 | 23 | 347 | 2.09e-76 | 249 |
Msa0282580 | AT5G04700.1 | 31.512 | 549 | 324 | 13 | 190 | 690 | 112 | 656 | 5.50e-66 | 231 |
Msa0282580 | AT5G04690.2 | 31.349 | 504 | 300 | 11 | 228 | 690 | 148 | 646 | 6.46e-66 | 230 |
Msa0282580 | AT5G04690.3 | 30.739 | 501 | 293 | 11 | 228 | 690 | 148 | 632 | 3.21e-64 | 225 |
Msa0282580 | AT5G04690.1 | 32.135 | 473 | 303 | 10 | 228 | 690 | 148 | 612 | 9.57e-64 | 223 |
Msa0282580 | AT5G04680.2 | 31.021 | 519 | 305 | 12 | 223 | 690 | 12 | 528 | 2.78e-57 | 204 |
Msa0282580 | AT5G04680.4 | 30.645 | 558 | 325 | 15 | 190 | 690 | 99 | 651 | 2.80e-57 | 206 |
Msa0282580 | AT5G04680.3 | 30.270 | 555 | 317 | 15 | 190 | 690 | 99 | 637 | 1.57e-55 | 201 |
Msa0282580 | AT5G04730.1 | 29.831 | 533 | 305 | 16 | 228 | 704 | 76 | 595 | 5.64e-54 | 196 |
Msa0282580 | AT5G04680.1 | 36.213 | 301 | 178 | 5 | 402 | 690 | 382 | 680 | 1.19e-46 | 177 |
Msa0282580 | AT3G54065.1 | 42.654 | 211 | 114 | 1 | 487 | 690 | 8 | 218 | 2.56e-45 | 162 |
Msa0282580 | AT5G35830.1 | 43.624 | 149 | 83 | 1 | 159 | 306 | 89 | 237 | 5.74e-29 | 117 |
Msa0282580 | AT3G54070.1 | 34.054 | 185 | 111 | 4 | 161 | 336 | 54 | 236 | 7.71e-19 | 87.4 |
Msa0282580 | AT5G04700.2 | 26.257 | 358 | 214 | 12 | 190 | 501 | 112 | 465 | 1.57e-16 | 83.6 |
Find 138 sgRNAs with CRISPR-Local
Find 455 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTAAGATCATCTGGATTTA+TGG | 0.100523 | 2_3:+18895643 | None:intergenic |
GCTGCAGAAGTTGGAAATTT+TGG | 0.142363 | 2_3:-18892451 | Msa0282580:CDS |
AATCCACATATTAGCTTTAA+AGG | 0.145386 | 2_3:+18891600 | None:intergenic |
AGTCAACTTGAATTGGTTTC+TGG | 0.187623 | 2_3:-18892214 | Msa0282580:CDS |
TCCAATTGGTTAAATTTCTT+TGG | 0.210384 | 2_3:-18892555 | Msa0282580:CDS |
AATCGAATGCCTTTGGATTC+TGG | 0.211817 | 2_3:-18892729 | Msa0282580:CDS |
TTTGAATAAAACATCATTCT+TGG | 0.233931 | 2_3:-18891733 | Msa0282580:CDS |
ACCCACTGTTACCTGTAAAA+AGG | 0.245812 | 2_3:-18893905 | Msa0282580:CDS |
GTGTTTATCCTAGCTTGATA+TGG | 0.254743 | 2_3:-18892408 | Msa0282580:CDS |
CATAAAGGAATGGAAAATTA+AGG | 0.260572 | 2_3:+18898731 | None:intergenic |
CCTTTATATGCCCTATTTGA+TGG | 0.261228 | 2_3:+18892311 | None:intergenic |
TTTACCAGGATTGGTCATTA+TGG | 0.270043 | 2_3:+18892677 | None:intergenic |
TACTCTTCTTGTAATATATA+TGG | 0.271851 | 2_3:-18891136 | Msa0282580:three_prime_UTR |
ATTCACAAGCATGCTCTAAA+TGG | 0.276178 | 2_3:-18894173 | Msa0282580:CDS |
AAGAGAAGAATGCATGAAAA+AGG | 0.277740 | 2_3:+18891186 | None:intergenic |
CCTGGAGGAAATACGATAAA+AGG | 0.284931 | 2_3:+18898534 | None:intergenic |
TTCCATCTGGTCCATCAAAT+AGG | 0.287291 | 2_3:-18892322 | Msa0282580:CDS |
GCGGGTGCTTGTGGTGATAC+TGG | 0.298679 | 2_3:+18895429 | None:intergenic |
TCATTTACTCAACCTACTAT+TGG | 0.299582 | 2_3:-18891413 | Msa0282580:CDS |
TCTATTCTTGTCTCGCGTTA+TGG | 0.309263 | 2_3:-18891648 | Msa0282580:CDS |
TGTATCTACACTGGCATCTA+TGG | 0.319961 | 2_3:-18893756 | Msa0282580:intron |
GTGCTTCCCTTTGGCCGATT+TGG | 0.323368 | 2_3:+18898896 | None:intergenic |
AAATGTGCGTCGAGTTACTA+TGG | 0.340402 | 2_3:-18892180 | Msa0282580:CDS |
AAAATTCTCTTAAGATCATC+TGG | 0.343970 | 2_3:+18895635 | None:intergenic |
TCCAAAGAAATTTAACCAAT+TGG | 0.347460 | 2_3:+18892554 | None:intergenic |
GGCTCAAAATCGAATGCCTT+TGG | 0.350235 | 2_3:-18892736 | Msa0282580:CDS |
ACCACGAAGTCAACTTGAAT+TGG | 0.364937 | 2_3:-18892221 | Msa0282580:CDS |
CCATCAAATAGGGCATATAA+AGG | 0.365171 | 2_3:-18892311 | Msa0282580:CDS |
TTACCAGGATTGGTCATTAT+GGG | 0.370620 | 2_3:+18892678 | None:intergenic |
TCCATCTGGTCCATCAAATA+GGG | 0.399442 | 2_3:-18892321 | Msa0282580:CDS |
ATGGGATTATGATCATGTTC+AGG | 0.399531 | 2_3:+18892696 | None:intergenic |
AACCTATGTACAAAAGTATT+GGG | 0.399981 | 2_3:+18891460 | None:intergenic |
TGCAAAGGGTTTACCAGGAT+TGG | 0.404450 | 2_3:+18892668 | None:intergenic |
AGAGACAGCTTTGCATCTCT+TGG | 0.406984 | 2_3:-18892757 | Msa0282580:CDS |
TTTGAAGAATTATTGCTGAT+TGG | 0.412876 | 2_3:+18898776 | None:intergenic |
AGCATGCTCTAAATGGAAAC+TGG | 0.416905 | 2_3:-18894166 | Msa0282580:CDS |
TGTAGGCCACCCATTTGTTA+TGG | 0.417839 | 2_3:+18894094 | None:intergenic |
TGTTTATCCTAGCTTGATAT+GGG | 0.418566 | 2_3:-18892407 | Msa0282580:CDS |
ATATTTGATGCTGCAGAAGT+TGG | 0.423304 | 2_3:-18892460 | Msa0282580:CDS |
CAGTTTGTACCATCGAAGTA+TGG | 0.429133 | 2_3:+18895863 | None:intergenic |
ATTTAGAGCATGCTTGTGAA+TGG | 0.431297 | 2_3:+18894175 | None:intergenic |
TTTCTCATCTTTATCTGTGC+AGG | 0.431900 | 2_3:+18891942 | None:intergenic |
AAACCTATGTACAAAAGTAT+TGG | 0.433272 | 2_3:+18891459 | None:intergenic |
GATAAATGAAGGAGAGAAGA+AGG | 0.433386 | 2_3:+18898855 | None:intergenic |
ACTTCAGCACTTCACCAATC+CGG | 0.437107 | 2_3:+18891212 | None:intergenic |
TCTAAGATGCGCTTGGCTGC+TGG | 0.440589 | 2_3:+18894143 | None:intergenic |
TTTAAAGCTAATATGTGGAT+TGG | 0.447933 | 2_3:-18891598 | Msa0282580:CDS |
GAAGTATGGTGGCTTTGAAA+TGG | 0.449020 | 2_3:+18895877 | None:intergenic |
AATCAGTTGACTACAAACTT+TGG | 0.451937 | 2_3:-18895805 | Msa0282580:CDS |
CAGAAACACTTTATTGCACT+TGG | 0.454500 | 2_3:-18892257 | Msa0282580:CDS |
TGCTACCATCATGCTTGTTA+CGG | 0.458985 | 2_3:+18891560 | None:intergenic |
ATAAAGGAATGGAAAATTAA+GGG | 0.460218 | 2_3:+18898732 | None:intergenic |
CTTCCTTTAAAGCTAATATG+TGG | 0.469346 | 2_3:-18891603 | Msa0282580:CDS |
AATAAACTCAAGAAATCTAC+GGG | 0.470860 | 2_3:-18891290 | Msa0282580:three_prime_UTR |
TCCTAGCTTGATATGGGATG+TGG | 0.473173 | 2_3:-18892401 | Msa0282580:CDS |
CTTCAGCACTTCACCAATCC+GGG | 0.474136 | 2_3:+18891213 | None:intergenic |
AAGAAGATTGTGATAAATGA+AGG | 0.478631 | 2_3:+18898844 | None:intergenic |
GCCGACCATACCTACGAGAT+TGG | 0.480450 | 2_3:+18891236 | None:intergenic |
ACCAATTCAAGTTGACTTCG+TGG | 0.480782 | 2_3:+18892220 | None:intergenic |
CGTCGAGTTACTATGGTTTG+AGG | 0.481581 | 2_3:-18892173 | Msa0282580:intron |
GCATGCTAGTATATTCCATC+TGG | 0.484064 | 2_3:-18892335 | Msa0282580:CDS |
GCTGCTGCAACTACTTTACC+AGG | 0.491983 | 2_3:-18891786 | Msa0282580:CDS |
TGCAAAGCAGCATACTGAAT+AGG | 0.493023 | 2_3:+18893864 | None:intergenic |
AGGTATGGTCGGCCCCGGAT+TGG | 0.494350 | 2_3:-18891226 | Msa0282580:three_prime_UTR |
TTTAGAGCATGCTTGTGAAT+GGG | 0.494360 | 2_3:+18894176 | None:intergenic |
ATGGACAATACCATCATTGA+AGG | 0.496388 | 2_3:-18895905 | Msa0282580:CDS |
AATGGATCTTCCTTCAATGA+TGG | 0.496725 | 2_3:+18895895 | None:intergenic |
ATGGTACAAACTGTACTGAA+TGG | 0.500357 | 2_3:-18895853 | Msa0282580:CDS |
CTCTATGTCTAAGATGCGCT+TGG | 0.501048 | 2_3:+18894136 | None:intergenic |
CCAGAGTCATCGGTACCGCC+TGG | 0.504086 | 2_3:+18891768 | None:intergenic |
ACACTATTGCATATTGCTGC+AGG | 0.507047 | 2_3:-18894074 | Msa0282580:CDS |
GGAAATTGTTGACTTAATGT+TGG | 0.507791 | 2_3:-18893934 | Msa0282580:CDS |
TAATAAACTCAAGAAATCTA+CGG | 0.508333 | 2_3:-18891291 | Msa0282580:three_prime_UTR |
ATTTCAACTGTCATTGCTAC+CGG | 0.510096 | 2_3:-18891816 | Msa0282580:CDS |
TTGTTGACTTAATGTTGGAT+AGG | 0.510612 | 2_3:-18893929 | Msa0282580:CDS |
AGATAGAGTACTCCAATAGT+AGG | 0.512344 | 2_3:+18891401 | None:intergenic |
CTCGTAGGTATGGTCGGCCC+CGG | 0.514293 | 2_3:-18891231 | Msa0282580:three_prime_UTR |
AATCCCATAATGACCAATCC+TGG | 0.518539 | 2_3:-18892681 | Msa0282580:intron |
CATCAAATAGGGCATATAAA+GGG | 0.524642 | 2_3:-18892310 | Msa0282580:CDS |
ATAATTGTACAGACTAGTGC+TGG | 0.525374 | 2_3:-18898570 | Msa0282580:intron |
GTCAAACGGCAAAGGAAATG+TGG | 0.527792 | 2_3:-18895607 | Msa0282580:CDS |
GGAAAATTAAGGGAAGAGTA+AGG | 0.528254 | 2_3:+18898742 | None:intergenic |
AGAGCTGCTGCGGGTGCTTG+TGG | 0.528314 | 2_3:+18895420 | None:intergenic |
GCCCTATTTGATGGACCAGA+TGG | 0.528474 | 2_3:+18892320 | None:intergenic |
ACGCAACTAAAACGAGAAAG+AGG | 0.529754 | 2_3:+18898809 | None:intergenic |
ACGATCCAATCTCGTAGGTA+TGG | 0.530992 | 2_3:-18891241 | Msa0282580:three_prime_UTR |
ACTCCTTCACAAAGTGGATG+TGG | 0.531177 | 2_3:+18894045 | None:intergenic |
ATAAATGAAGGAGAGAAGAA+GGG | 0.535615 | 2_3:+18898856 | None:intergenic |
TGGAGTACTCTATCTAAGCC+TGG | 0.538215 | 2_3:-18891393 | Msa0282580:CDS |
TGCTGCTGCAGCTGGAAACA+TGG | 0.539534 | 2_3:-18893955 | Msa0282580:CDS |
GAGAATATTGAGATGAAACT+AGG | 0.541523 | 2_3:+18891489 | None:intergenic |
TTTAAGTTGTCAAACGGCAA+AGG | 0.541893 | 2_3:-18895615 | Msa0282580:CDS |
TGAAATTAGCATGCAAGACT+CGG | 0.543920 | 2_3:+18891833 | None:intergenic |
ATTCAGTATGCTGCTTTGCA+AGG | 0.548505 | 2_3:-18893861 | Msa0282580:CDS |
TGTGGTGATACTGGAGGTGT+AGG | 0.552573 | 2_3:+18895438 | None:intergenic |
AGTACTGCTATTTGTTACAA+AGG | 0.553032 | 2_3:+18891155 | None:intergenic |
GCATCAAATATTAGTTGAGA+AGG | 0.553049 | 2_3:+18892472 | None:intergenic |
TCAATAACTCCTTCACAAAG+TGG | 0.554262 | 2_3:+18894039 | None:intergenic |
TTAATGATTTCATTTAACTC+CGG | 0.556416 | 2_3:+18892499 | None:intergenic |
TTTATGCCAAATCGGCCAAA+GGG | 0.563656 | 2_3:-18898902 | Msa0282580:five_prime_UTR |
CCAGGCGGTACCGATGACTC+TGG | 0.565328 | 2_3:-18891768 | Msa0282580:CDS |
TCAAAGCCACCATACTTCGA+TGG | 0.580044 | 2_3:-18895872 | Msa0282580:CDS |
TTTACGTACTAGAGAAGTAG+TGG | 0.582109 | 2_3:-18891359 | Msa0282580:exon |
TCCACATCCCATATCAAGCT+AGG | 0.582284 | 2_3:+18892400 | None:intergenic |
TACACATAGCTGTATTGCAT+CGG | 0.583100 | 2_3:-18892357 | Msa0282580:CDS |
TCCAATCTCGTAGGTATGGT+CGG | 0.583437 | 2_3:-18891237 | Msa0282580:three_prime_UTR |
TTCTTCGCTTGTATCTACAC+TGG | 0.585964 | 2_3:-18893765 | Msa0282580:CDS |
TGATGAAGATATGAAGAACA+TGG | 0.592847 | 2_3:-18895702 | Msa0282580:CDS |
TAAATGAAGGAGAGAAGAAG+GGG | 0.593492 | 2_3:+18898857 | None:intergenic |
AAAATGCTGCCATAACAAAT+GGG | 0.593942 | 2_3:-18894103 | Msa0282580:CDS |
ATACTACCATGGTTCGACAT+TGG | 0.601191 | 2_3:-18891514 | Msa0282580:CDS |
TATCTCCGTAACAAGCATGA+TGG | 0.602474 | 2_3:-18891565 | Msa0282580:CDS |
GTGTCGTATAGAGCTGCTGC+GGG | 0.603208 | 2_3:+18895411 | None:intergenic |
TCAAACGGCAAAGGAAATGT+GGG | 0.610564 | 2_3:-18895606 | Msa0282580:CDS |
AAATGAAGGAGAGAAGAAGG+GGG | 0.618081 | 2_3:+18898858 | None:intergenic |
TAAGAGAAAACGCAGAGTCG+TGG | 0.621726 | 2_3:-18891869 | Msa0282580:CDS |
TAATAACGATCCAATCTCGT+AGG | 0.624877 | 2_3:-18891246 | Msa0282580:three_prime_UTR |
AGTGTCGTATAGAGCTGCTG+CGG | 0.631974 | 2_3:+18895410 | None:intergenic |
ACAGATAAAGATGAGAAACT+CGG | 0.632292 | 2_3:-18891937 | Msa0282580:CDS |
ATCGCATTGCAAGATGTCAA+CGG | 0.632830 | 2_3:-18893996 | Msa0282580:CDS |
GCAGCAATATGCAATAGTGT+AGG | 0.635326 | 2_3:+18894077 | None:intergenic |
AAAACACTACTCATCAAAGC+CGG | 0.635811 | 2_3:-18892518 | Msa0282580:CDS |
TTCTTCATAGTATACTACCA+TGG | 0.636479 | 2_3:-18891525 | Msa0282580:CDS |
AAGGAAGATGCAAAATGACA+TGG | 0.640102 | 2_3:-18893842 | Msa0282580:CDS |
TTTGTACCATCGAAGTATGG+TGG | 0.655271 | 2_3:+18895866 | None:intergenic |
ATAAAGATGAGAAACTCGGA+AGG | 0.662531 | 2_3:-18891933 | Msa0282580:CDS |
AGTTGCAGCAGCAAACACTC+CGG | 0.666075 | 2_3:+18891797 | None:intergenic |
CAATGACAACCAGAATCCAA+AGG | 0.669131 | 2_3:+18892720 | None:intergenic |
AAACCACATCCACTTTGTGA+AGG | 0.674610 | 2_3:-18894048 | Msa0282580:CDS |
ATGCTGCCATAACAAATGGG+TGG | 0.675092 | 2_3:-18894100 | Msa0282580:CDS |
AGACAAGAAAATCAATATCG+CGG | 0.681208 | 2_3:+18891668 | None:intergenic |
CTATGTACAAAAGTATTGGG+AGG | 0.681529 | 2_3:+18891463 | None:intergenic |
TAGGAACCAATGTCGAACCA+TGG | 0.693129 | 2_3:+18891508 | None:intergenic |
TTCAGCACTTCACCAATCCG+GGG | 0.696514 | 2_3:+18891214 | None:intergenic |
GGTGCTTGTGGTGATACTGG+AGG | 0.737175 | 2_3:+18895432 | None:intergenic |
GCTTGTGAATGGGAACACAA+AGG | 0.763909 | 2_3:+18894186 | None:intergenic |
GCTGCAACTACTTTACCAGG+CGG | 0.805075 | 2_3:-18891783 | Msa0282580:CDS |
ATAAACTCAAGAAATCTACG+GGG | 0.823252 | 2_3:-18891289 | Msa0282580:three_prime_UTR |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAATATAAATATATACAGAA+TGG | - | chr2_3:18891577-18891596 | Msa0282580:CDS | 10.0% |
!!! | TTTAATAAAAGTACTTATTA+AGG | - | chr2_3:18891933-18891952 | Msa0282580:CDS | 10.0% |
!! | ATTATTTAAATAATAGATGA+TGG | - | chr2_3:18892410-18892429 | Msa0282580:CDS | 10.0% |
!! | AAAATACAATAATATTATAC+AGG | - | chr2_3:18893065-18893084 | Msa0282580:intron | 10.0% |
!! | AAATACAATAATATTATACA+GGG | - | chr2_3:18893066-18893085 | Msa0282580:intron | 10.0% |
!!! | AATAAATAAACGTTTTATTA+AGG | + | chr2_3:18893291-18893310 | None:intergenic | 10.0% |
!!! | GGTTTAAAATATATTTTTAA+GGG | + | chr2_3:18893487-18893506 | None:intergenic | 10.0% |
!!! | AGGTTTAAAATATATTTTTA+AGG | + | chr2_3:18893488-18893507 | None:intergenic | 10.0% |
!! | AAGTTTAATAAAAATACTAT+AGG | + | chr2_3:18893508-18893527 | None:intergenic | 10.0% |
!! | TAACATAAAATATTATATAC+TGG | + | chr2_3:18893726-18893745 | None:intergenic | 10.0% |
!!! | ATTAATTTTTTTGGAATTTT+TGG | + | chr2_3:18894247-18894266 | None:intergenic | 10.0% |
!! | ATTCCAAAAAAATTAATAAA+TGG | - | chr2_3:18894250-18894269 | Msa0282580:intron | 10.0% |
!!! | TTGTATTTTATTTAATTTTG+TGG | - | chr2_3:18895063-18895082 | Msa0282580:intron | 10.0% |
!!! | TAAATTGTCTTTTTTTTTTT+TGG | - | chr2_3:18895125-18895144 | Msa0282580:intron | 10.0% |
!! | ATTAAAAATATTAATATACG+AGG | - | chr2_3:18895270-18895289 | Msa0282580:intron | 10.0% |
!! | AATATAAAATTTAATGCAAA+GGG | + | chr2_3:18897357-18897376 | None:intergenic | 10.0% |
!! | AAATATAAAATTTAATGCAA+AGG | + | chr2_3:18897358-18897377 | None:intergenic | 10.0% |
!!! | TTTTTTAAATTCTTTTACAT+TGG | - | chr2_3:18897375-18897394 | Msa0282580:intron | 10.0% |
!! | TCAATAAAATGAATAAAAAA+GGG | + | chr2_3:18897875-18897894 | None:intergenic | 10.0% |
!! | TATATAAATAAAACTCTTAA+TGG | - | chr2_3:18897935-18897954 | Msa0282580:intron | 10.0% |
!! | ATTTATTGCTATAAAAAATC+TGG | - | chr2_3:18891316-18891335 | Msa0282580:three_prime_UTR | 15.0% |
!! | TTTATTGCTATAAAAAATCT+GGG | - | chr2_3:18891317-18891336 | Msa0282580:three_prime_UTR | 15.0% |
!! | TTATAAAGTCTTCAAATATA+TGG | - | chr2_3:18891644-18891663 | Msa0282580:CDS | 15.0% |
!!! | CATATTTAAATACTTTTCAT+TGG | + | chr2_3:18891996-18892015 | None:intergenic | 15.0% |
!!! | TATTATTCATTTTTACAAGT+GGG | - | chr2_3:18892054-18892073 | Msa0282580:intron | 15.0% |
!!! | ACTTTTTATATTTTGTTTTG+AGG | - | chr2_3:18892656-18892675 | Msa0282580:intron | 15.0% |
!!! | CATTTGTAATTTTGTAATAA+GGG | + | chr2_3:18893442-18893461 | None:intergenic | 15.0% |
!!! | TCATTTGTAATTTTGTAATA+AGG | + | chr2_3:18893443-18893462 | None:intergenic | 15.0% |
!! | AAAAGAAAAAGTTATATTCT+TGG | - | chr2_3:18893582-18893601 | Msa0282580:intron | 15.0% |
!! | GTAACACAATTAAAAAAATA+TGG | - | chr2_3:18894084-18894103 | Msa0282580:CDS | 15.0% |
!!! | TGACCATTTATTAATTTTTT+TGG | + | chr2_3:18894256-18894275 | None:intergenic | 15.0% |
!!! | AAATATATATTTTCTTTGAC+AGG | - | chr2_3:18894523-18894542 | Msa0282580:intron | 15.0% |
!!! | AATATATATTTTCTTTGACA+GGG | - | chr2_3:18894524-18894543 | Msa0282580:intron | 15.0% |
!! | AAATTAATAGTAATCACATT+AGG | - | chr2_3:18894931-18894950 | Msa0282580:intron | 15.0% |
!!! | TAATTATATTAAAAGTGCAA+TGG | + | chr2_3:18895100-18895119 | None:intergenic | 15.0% |
!!! | AGGCAAATAATTTTTTTTTA+AGG | - | chr2_3:18896689-18896708 | Msa0282580:intron | 15.0% |
!! | CTCAATAAAATGAATAAAAA+AGG | + | chr2_3:18897876-18897895 | None:intergenic | 15.0% |
!!! | TAAGAGTTTTATTTATATAG+TGG | + | chr2_3:18897934-18897953 | None:intergenic | 15.0% |
!! | ATAAAGGAATGGAAAATTAA+GGG | + | chr2_3:18891279-18891298 | None:intergenic | 20.0% |
!! | GTAATAAATAATACAAGTAC+AGG | + | chr2_3:18891350-18891369 | None:intergenic | 20.0% |
!! | GTTTAATATGTAAAGATAGT+GGG | + | chr2_3:18892020-18892039 | None:intergenic | 20.0% |
!! | TGTTTAATATGTAAAGATAG+TGG | + | chr2_3:18892021-18892040 | None:intergenic | 20.0% |
!!! | CTATTATTCATTTTTACAAG+TGG | - | chr2_3:18892053-18892072 | Msa0282580:intron | 20.0% |
!! | TTAAAAATACACTTAAATCG+AGG | + | chr2_3:18892525-18892544 | None:intergenic | 20.0% |
!! | AATATAAAAAGTTTGATCTG+TGG | + | chr2_3:18892648-18892667 | None:intergenic | 20.0% |
!!! | TTTTATATTTTGTTTTGAGG+AGG | - | chr2_3:18892659-18892678 | Msa0282580:intron | 20.0% |
!! | ACAAATAATATTCACTATGA+TGG | - | chr2_3:18892810-18892829 | Msa0282580:CDS | 20.0% |
!! | TAGAGTAAAGAAAATATCTA+TGG | + | chr2_3:18892918-18892937 | None:intergenic | 20.0% |
!! | TTTAGTATTATTCATATCAG+TGG | + | chr2_3:18892948-18892967 | None:intergenic | 20.0% |
!! | TTTCCTTAATAAAACGTAAA+AGG | - | chr2_3:18893333-18893352 | Msa0282580:intron | 20.0% |
!!! | TTTCCTTTTACGTTTTATTA+AGG | + | chr2_3:18893339-18893358 | None:intergenic | 20.0% |
!! | AGCAAAAACTATCAATAAAA+TGG | + | chr2_3:18893890-18893909 | None:intergenic | 20.0% |
!!! | TTAAATAATGTTTTGTCGTT+GGG | + | chr2_3:18893986-18894005 | None:intergenic | 20.0% |
!! | ATTTACCAATATTATGTTAC+CGG | - | chr2_3:18894740-18894759 | Msa0282580:intron | 20.0% |
!! | AGAACATCCAAAAATATATA+CGG | - | chr2_3:18894902-18894921 | Msa0282580:intron | 20.0% |
!! | GGAATTAATAACATTTGAAA+TGG | - | chr2_3:18895591-18895610 | Msa0282580:intron | 20.0% |
!! | CATATATAAATAGATGTGTT+CGG | + | chr2_3:18895727-18895746 | None:intergenic | 20.0% |
!! | AATTGTTGAAATCTTAATAG+TGG | + | chr2_3:18896482-18896501 | None:intergenic | 20.0% |
!! | ATTAATATTTGTTTGCGTTA+GGG | + | chr2_3:18896931-18896950 | None:intergenic | 20.0% |
!! | CTAATATAAGTTGTGTATTA+AGG | + | chr2_3:18896955-18896974 | None:intergenic | 20.0% |
!!! | AACTTATATTAGTTTCCTAT+TGG | - | chr2_3:18896963-18896982 | Msa0282580:intron | 20.0% |
!! | TTAATGATTTCATTTAACTC+CGG | + | chr2_3:18897512-18897531 | None:intergenic | 20.0% |
!!! | GTTTTATTTATATAGTGGAA+TGG | + | chr2_3:18897929-18897948 | None:intergenic | 20.0% |
!! | TTTGAATAAAACATCATTCT+TGG | - | chr2_3:18898275-18898294 | Msa0282580:intron | 20.0% |
!! | TAATAAACTCAAGAAATCTA+CGG | - | chr2_3:18898717-18898736 | Msa0282580:five_prime_UTR | 20.0% |
!! | TACTCTTCTTGTAATATATA+TGG | - | chr2_3:18898872-18898891 | Msa0282580:five_prime_UTR | 20.0% |
! | AAGAAGATTGTGATAAATGA+AGG | + | chr2_3:18891167-18891186 | None:intergenic | 25.0% |
! | TTTGAAGAATTATTGCTGAT+TGG | + | chr2_3:18891235-18891254 | None:intergenic | 25.0% |
! | CATAAAGGAATGGAAAATTA+AGG | + | chr2_3:18891280-18891299 | None:intergenic | 25.0% |
!! | AATTTTCCATTCCTTTATGA+AGG | - | chr2_3:18891281-18891300 | Msa0282580:three_prime_UTR | 25.0% |
!!! | TTTTTTCCTTCATAAAGGAA+TGG | + | chr2_3:18891290-18891309 | None:intergenic | 25.0% |
! | TTCCTTTATGAAGGAAAAAA+AGG | - | chr2_3:18891290-18891309 | Msa0282580:three_prime_UTR | 25.0% |
! | TCCTTTATGAAGGAAAAAAA+GGG | - | chr2_3:18891291-18891310 | Msa0282580:three_prime_UTR | 25.0% |
! | TTGCTTTAACATTTCTTTGT+CGG | - | chr2_3:18891502-18891521 | Msa0282580:CDS | 25.0% |
! | CTAGTATAACCAAAAATTTG+CGG | + | chr2_3:18891548-18891567 | None:intergenic | 25.0% |
! | ATATTAGACACCAATCAAAA+TGG | + | chr2_3:18891614-18891633 | None:intergenic | 25.0% |
!!! | ATTTTGATTGGTGTCTAATA+TGG | - | chr2_3:18891613-18891632 | Msa0282580:CDS | 25.0% |
! | GTAATAAAATGTGTACTACT+TGG | + | chr2_3:18892081-18892100 | None:intergenic | 25.0% |
! | TTATTACTTCTTTATGCAAG+TGG | - | chr2_3:18892094-18892113 | Msa0282580:intron | 25.0% |
! | TATTACTTCTTTATGCAAGT+GGG | - | chr2_3:18892095-18892114 | Msa0282580:intron | 25.0% |
! | GTAATAAAATGTGTACTACT+TGG | + | chr2_3:18892081-18892100 | None:intergenic | 25.0% |
! | TTATTACTTCTTTATGCAAG+TGG | - | chr2_3:18892094-18892113 | Msa0282580:intron | 25.0% |
! | TATTACTTCTTTATGCAAGT+GGG | - | chr2_3:18892095-18892114 | Msa0282580:intron | 25.0% |
! | GTAATAAAATGTGTACTACT+TGG | + | chr2_3:18892081-18892100 | None:intergenic | 25.0% |
!! | AATTAACTTGGAAGAGTATA+TGG | + | chr2_3:18893219-18893238 | None:intergenic | 25.0% |
! | AATGAACTGACAAATTAACT+TGG | + | chr2_3:18893231-18893250 | None:intergenic | 25.0% |
! | AAATCTAAAAGTCAGTTTCA+TGG | + | chr2_3:18893769-18893788 | None:intergenic | 25.0% |
! | CAATAAAATGGAAGCAATTA+TGG | + | chr2_3:18893878-18893897 | None:intergenic | 25.0% |
!!! | GTTTTTGCTCTTTGAAAAAT+TGG | - | chr2_3:18893901-18893920 | Msa0282580:CDS | 25.0% |
!! | CTTAAATAATGTTTTGTCGT+TGG | + | chr2_3:18893987-18894006 | None:intergenic | 25.0% |
! | AAAATTCTCTTAAGATCATC+TGG | + | chr2_3:18894376-18894395 | None:intergenic | 25.0% |
!!! | GAGAATTTTAAGTTGTCAAA+CGG | - | chr2_3:18894387-18894406 | Msa0282580:intron | 25.0% |
!! | ACAAATTAATTTGAGAGAGA+GGG | + | chr2_3:18894662-18894681 | None:intergenic | 25.0% |
!! | TACAAATTAATTTGAGAGAG+AGG | + | chr2_3:18894663-18894682 | None:intergenic | 25.0% |
!! | TAAATCAATTTTGCAGAACA+TGG | + | chr2_3:18894725-18894744 | None:intergenic | 25.0% |
!! | ATTAATAGGCTTTGTAGATT+TGG | + | chr2_3:18894774-18894793 | None:intergenic | 25.0% |
!! | TCTGGTTTCTATTCATTAAT+AGG | + | chr2_3:18894788-18894807 | None:intergenic | 25.0% |
! | CAAGAAAATATGTACTATGT+TGG | - | chr2_3:18894982-18895001 | Msa0282580:intron | 25.0% |
! | AATACAAAATCAAGTACGAA+TGG | + | chr2_3:18895050-18895069 | None:intergenic | 25.0% |
! | AAATACAATTTAACAACGCT+TGG | + | chr2_3:18895223-18895242 | None:intergenic | 25.0% |
!!! | AAGGTGTTGTGTATTTTATA+TGG | + | chr2_3:18895504-18895523 | None:intergenic | 25.0% |
!!! | CAATTTTTTTATTTAGCCAG+TGG | + | chr2_3:18895534-18895553 | None:intergenic | 25.0% |
!! | CACTGGCTAAATAAAAAAAT+TGG | - | chr2_3:18895532-18895551 | Msa0282580:intron | 25.0% |
! | AGAAGAATAGATGAAATTTG+TGG | - | chr2_3:18895689-18895708 | Msa0282580:CDS | 25.0% |
!! | AAACTATTAGTCTCTAATGT+TGG | + | chr2_3:18896348-18896367 | None:intergenic | 25.0% |
!!! | AGAATTTTGAGTAGTTCATA+TGG | - | chr2_3:18896528-18896547 | Msa0282580:intron | 25.0% |
! | TATTAAAACTTGCACTTGAA+AGG | + | chr2_3:18896611-18896630 | None:intergenic | 25.0% |
! | AATTGTCTTCACAAATGAAA+CGG | - | chr2_3:18896633-18896652 | Msa0282580:intron | 25.0% |
! | TTAATATTTGTTTGCGTTAG+GGG | + | chr2_3:18896930-18896949 | None:intergenic | 25.0% |
! | CATTAATATTTGTTTGCGTT+AGG | + | chr2_3:18896932-18896951 | None:intergenic | 25.0% |
! | CAAATTCATTATAGCTGAAA+CGG | + | chr2_3:18897017-18897036 | None:intergenic | 25.0% |
! | TTTCAGCTATAATGAATTTG+AGG | - | chr2_3:18897017-18897036 | Msa0282580:intron | 25.0% |
! | GTCTCTAAACTTCTATTTAA+AGG | - | chr2_3:18897039-18897058 | Msa0282580:intron | 25.0% |
! | TCTAAACTTCTATTTAAAGG+TGG | - | chr2_3:18897042-18897061 | Msa0282580:intron | 25.0% |
! | TCCAATTGGTTAAATTTCTT+TGG | - | chr2_3:18897453-18897472 | Msa0282580:intron | 25.0% |
! | TCCAAAGAAATTTAACCAAT+TGG | + | chr2_3:18897457-18897476 | None:intergenic | 25.0% |
!!! | GATGTTTTATTCAAATAGTG+TGG | + | chr2_3:18898270-18898289 | None:intergenic | 25.0% |
!!! | AATCCACATATTAGCTTTAA+AGG | + | chr2_3:18898411-18898430 | None:intergenic | 25.0% |
!! | TTTAAAGCTAATATGTGGAT+TGG | - | chr2_3:18898410-18898429 | Msa0282580:intron | 25.0% |
!!! | AACCTATGTACAAAAGTATT+GGG | + | chr2_3:18898551-18898570 | None:intergenic | 25.0% |
!! | AAACCTATGTACAAAAGTAT+TGG | + | chr2_3:18898552-18898571 | None:intergenic | 25.0% |
! | AATAAACTCAAGAAATCTAC+GGG | - | chr2_3:18898718-18898737 | Msa0282580:five_prime_UTR | 25.0% |
ATAAATGAAGGAGAGAAGAA+GGG | + | chr2_3:18891155-18891174 | None:intergenic | 30.0% | |
!!! | ACCCTTTTTTTCCTTCATAA+AGG | + | chr2_3:18891295-18891314 | None:intergenic | 30.0% |
TGCTTTAACATTTCTTTGTC+GGG | - | chr2_3:18891503-18891522 | Msa0282580:CDS | 30.0% | |
! | AAATCTTAGCCGCAAATTTT+TGG | - | chr2_3:18891536-18891555 | Msa0282580:CDS | 30.0% |
!! | CTAACTTTGAGATGAATTCA+AGG | + | chr2_3:18891687-18891706 | None:intergenic | 30.0% |
! | TTTTTACTGTTTAAGCCACA+CGG | - | chr2_3:18891774-18891793 | Msa0282580:CDS | 30.0% |
TATTTAAGGAGTCCTTGTTA+GGG | + | chr2_3:18891880-18891899 | None:intergenic | 30.0% | |
AAATAAGTGATGTATCACGT+GGG | + | chr2_3:18891906-18891925 | None:intergenic | 30.0% | |
TAAATAAGTGATGTATCACG+TGG | + | chr2_3:18891907-18891926 | None:intergenic | 30.0% | |
CCTTATTAGTGTATTGTCAT+TGG | + | chr2_3:18891970-18891989 | None:intergenic | 30.0% | |
CCAATGACAATACACTAATA+AGG | - | chr2_3:18891967-18891986 | Msa0282580:intron | 30.0% | |
TAAATCGAGGCTATATATAC+AGG | + | chr2_3:18892512-18892531 | None:intergenic | 30.0% | |
ATGAGCTTCATATAAACTAG+AGG | + | chr2_3:18892704-18892723 | None:intergenic | 30.0% | |
!!! | TTTTAGCTTACTGCATAACT+CGG | - | chr2_3:18892764-18892783 | Msa0282580:CDS | 30.0% |
ATCCACTAATAAGGAATCAT+AGG | - | chr2_3:18893106-18893125 | Msa0282580:intron | 30.0% | |
GTTTGATTGTTAAAGACTCT+TGG | + | chr2_3:18893154-18893173 | None:intergenic | 30.0% | |
!! | TTGGCTTTTGCTAAAAACAA+AGG | - | chr2_3:18893601-18893620 | Msa0282580:intron | 30.0% |
AATTATGTGGAAGCTTAACT+CGG | + | chr2_3:18893801-18893820 | None:intergenic | 30.0% | |
TAAGCTTCCACATAATTTAC+TGG | - | chr2_3:18893804-18893823 | Msa0282580:CDS | 30.0% | |
TACAAAACTTAGACTTAACG+AGG | - | chr2_3:18894041-18894060 | Msa0282580:CDS | 30.0% | |
AATCAGTTGACTACAAACTT+TGG | - | chr2_3:18894203-18894222 | Msa0282580:CDS | 30.0% | |
!! | CTTTGGCTTGTGATTAAAAA+TGG | - | chr2_3:18894220-18894239 | Msa0282580:intron | 30.0% |
TGATGAAGATATGAAGAACA+TGG | - | chr2_3:18894306-18894325 | Msa0282580:intron | 30.0% | |
CTTAAGATCATCTGGATTTA+TGG | + | chr2_3:18894368-18894387 | None:intergenic | 30.0% | |
!! | TCCTAATCTTGAGTTTTTAG+TGG | - | chr2_3:18894620-18894639 | Msa0282580:intron | 30.0% |
TCCACTAAAAACTCAAGATT+AGG | + | chr2_3:18894624-18894643 | None:intergenic | 30.0% | |
TAATCACATTAGGACAGAAA+TGG | - | chr2_3:18894941-18894960 | Msa0282580:intron | 30.0% | |
AATCACATTAGGACAGAAAT+GGG | - | chr2_3:18894942-18894961 | Msa0282580:intron | 30.0% | |
!!! | CATTTTTTGTGAAAATGACC+CGG | + | chr2_3:18895012-18895031 | None:intergenic | 30.0% |
TGTTCAAGCAGAATAGATTA+TGG | + | chr2_3:18895394-18895413 | None:intergenic | 30.0% | |
AACAAAGACATTATCAGAGT+TGG | + | chr2_3:18895571-18895590 | None:intergenic | 30.0% | |
! | AACTCTGATAATGTCTTTGT+TGG | - | chr2_3:18895570-18895589 | Msa0282580:intron | 30.0% |
TATATGCTGGAACTTAACTT+TGG | - | chr2_3:18895620-18895639 | Msa0282580:CDS | 30.0% | |
TAGATGAAATTTGTGGATGA+TGG | - | chr2_3:18895696-18895715 | Msa0282580:CDS | 30.0% | |
! | GTGAATTGAACTTTCGTTTT+AGG | - | chr2_3:18895772-18895791 | Msa0282580:CDS | 30.0% |
AAAAATGCTGCCATAACAAA+TGG | - | chr2_3:18895904-18895923 | Msa0282580:CDS | 30.0% | |
AAAATGCTGCCATAACAAAT+GGG | - | chr2_3:18895905-18895924 | Msa0282580:CDS | 30.0% | |
!! | GGAAATTGTTGACTTAATGT+TGG | - | chr2_3:18896074-18896093 | Msa0282580:intron | 30.0% |
!!! | AATACATCGTTTTGAAGATG+AGG | - | chr2_3:18896206-18896225 | Msa0282580:intron | 30.0% |
TTTCTAACTAGTCCCTAAAT+CGG | + | chr2_3:18896441-18896460 | None:intergenic | 30.0% | |
! | TCTTAATAGTGGTCGATTTA+GGG | + | chr2_3:18896471-18896490 | None:intergenic | 30.0% |
! | ATCTTAATAGTGGTCGATTT+AGG | + | chr2_3:18896472-18896491 | None:intergenic | 30.0% |
CAACAATTTGATCACTAAAC+CGG | - | chr2_3:18896494-18896513 | Msa0282580:intron | 30.0% | |
AACAATTTGATCACTAAACC+GGG | - | chr2_3:18896495-18896514 | Msa0282580:intron | 30.0% | |
AAAATTCTATAGTTAGAGCC+CGG | + | chr2_3:18896516-18896535 | None:intergenic | 30.0% | |
AGTAGTTCATATGGTCTATT+CGG | - | chr2_3:18896537-18896556 | Msa0282580:intron | 30.0% | |
TAATATTTGTTTGCGTTAGG+GGG | + | chr2_3:18896929-18896948 | None:intergenic | 30.0% | |
! | TTTTTGCAAATGAGAAGTTC+TGG | + | chr2_3:18897139-18897158 | None:intergenic | 30.0% |
!! | CCTATCTCTTACCATTTTTA+AGG | + | chr2_3:18897199-18897218 | None:intergenic | 30.0% |
CCTTAAAAATGGTAAGAGAT+AGG | - | chr2_3:18897196-18897215 | Msa0282580:intron | 30.0% | |
GCATCAAATATTAGTTGAGA+AGG | + | chr2_3:18897539-18897558 | None:intergenic | 30.0% | |
TGTTTATCCTAGCTTGATAT+GGG | - | chr2_3:18897601-18897620 | Msa0282580:intron | 30.0% | |
CATCAAATAGGGCATATAAA+GGG | - | chr2_3:18897698-18897717 | Msa0282580:intron | 30.0% | |
! | TTATATTGCTATTGAGACAG+TGG | + | chr2_3:18897973-18897992 | None:intergenic | 30.0% |
ACAGATAAAGATGAGAAACT+CGG | - | chr2_3:18898071-18898090 | Msa0282580:intron | 30.0% | |
AGACAAGAAAATCAATATCG+CGG | + | chr2_3:18898343-18898362 | None:intergenic | 30.0% | |
!! | CTTCCTTTAAAGCTAATATG+TGG | - | chr2_3:18898405-18898424 | Msa0282580:intron | 30.0% |
TTCTTCATAGTATACTACCA+TGG | - | chr2_3:18898483-18898502 | Msa0282580:intron | 30.0% | |
GAGAATATTGAGATGAAACT+AGG | + | chr2_3:18898522-18898541 | None:intergenic | 30.0% | |
TCATTTACTCAACCTACTAT+TGG | - | chr2_3:18898595-18898614 | Msa0282580:intron | 30.0% | |
!! | ACGTAAATCATATTTTTGCC+AGG | + | chr2_3:18898636-18898655 | None:intergenic | 30.0% |
ATAAACTCAAGAAATCTACG+GGG | - | chr2_3:18898719-18898738 | Msa0282580:five_prime_UTR | 30.0% | |
AGAGAAGAATGCATGAAAAA+GGG | + | chr2_3:18898824-18898843 | None:intergenic | 30.0% | |
AAGAGAAGAATGCATGAAAA+AGG | + | chr2_3:18898825-18898844 | None:intergenic | 30.0% | |
! | AGTACTGCTATTTGTTACAA+AGG | + | chr2_3:18898856-18898875 | None:intergenic | 30.0% |
TAAATGAAGGAGAGAAGAAG+GGG | + | chr2_3:18891154-18891173 | None:intergenic | 35.0% | |
GATAAATGAAGGAGAGAAGA+AGG | + | chr2_3:18891156-18891175 | None:intergenic | 35.0% | |
GGAAAATTAAGGGAAGAGTA+AGG | + | chr2_3:18891269-18891288 | None:intergenic | 35.0% | |
ATAATTGTACAGACTAGTGC+TGG | - | chr2_3:18891438-18891457 | Msa0282580:CDS | 35.0% | |
AATGTTAAAGCAACCATACC+TGG | + | chr2_3:18891495-18891514 | None:intergenic | 35.0% | |
AGACACCAATCAAAATGGTA+CGG | + | chr2_3:18891609-18891628 | None:intergenic | 35.0% | |
CTATTTAAGGAGTCCTTGTT+AGG | + | chr2_3:18891881-18891900 | None:intergenic | 35.0% | |
AATAAGTGATGTATCACGTG+GGG | + | chr2_3:18891905-18891924 | None:intergenic | 35.0% | |
AAGGAACAGGCAACTATATA+AGG | + | chr2_3:18892230-18892249 | None:intergenic | 35.0% | |
TATAGTTGCCTGTTCCTTAA+CGG | - | chr2_3:18892232-18892251 | Msa0282580:CDS | 35.0% | |
! | CTCAATTTTTCTTCCTCCAA+TGG | - | chr2_3:18892258-18892277 | Msa0282580:CDS | 35.0% |
! | AATTTTTCTTCCTCCAATGG+AGG | - | chr2_3:18892261-18892280 | Msa0282580:CDS | 35.0% |
! | ATTTTTCTTCCTCCAATGGA+GGG | - | chr2_3:18892262-18892281 | Msa0282580:CDS | 35.0% |
TATACAGGGAGACATGTTAA+TGG | - | chr2_3:18893080-18893099 | Msa0282580:intron | 35.0% | |
ATACAGGGAGACATGTTAAT+GGG | - | chr2_3:18893081-18893100 | Msa0282580:intron | 35.0% | |
CACCTATGATTCCTTATTAG+TGG | + | chr2_3:18893111-18893130 | None:intergenic | 35.0% | |
CACTAATAAGGAATCATAGG+TGG | - | chr2_3:18893109-18893128 | Msa0282580:intron | 35.0% | |
CTTGGAGACAAATTACTTCA+AGG | + | chr2_3:18893136-18893155 | None:intergenic | 35.0% | |
ATTATGTGGAAGCTTAACTC+GGG | + | chr2_3:18893800-18893819 | None:intergenic | 35.0% | |
TATGTCGATGCTTAACTCAA+GGG | + | chr2_3:18893840-18893859 | None:intergenic | 35.0% | |
TTATGTCGATGCTTAACTCA+AGG | + | chr2_3:18893841-18893860 | None:intergenic | 35.0% | |
GTAATGATCAGTCCATGTAA+GGG | - | chr2_3:18893923-18893942 | Msa0282580:CDS | 35.0% | |
TAATGATCAGTCCATGTAAG+GGG | - | chr2_3:18893924-18893943 | Msa0282580:CDS | 35.0% | |
ATTGTGTTACCTGCAAATGA+TGG | + | chr2_3:18894074-18894093 | None:intergenic | 35.0% | |
ATGGACAATACCATCATTGA+AGG | - | chr2_3:18894103-18894122 | Msa0282580:CDS | 35.0% | |
AATGGATCTTCCTTCAATGA+TGG | + | chr2_3:18894116-18894135 | None:intergenic | 35.0% | |
ATGGTACAAACTGTACTGAA+TGG | - | chr2_3:18894155-18894174 | Msa0282580:CDS | 35.0% | |
!! | TTTAAGTTGTCAAACGGCAA+AGG | - | chr2_3:18894393-18894412 | Msa0282580:intron | 35.0% |
!!! | CTTGAGTTTTTAGTGGAAAC+AGG | - | chr2_3:18894627-18894646 | Msa0282580:intron | 35.0% |
!!! | GTTTTTAGTGGAAACAGGTA+TGG | - | chr2_3:18894632-18894651 | Msa0282580:intron | 35.0% |
! | ATCAATTTTGCAGAACATGG+TGG | + | chr2_3:18894722-18894741 | None:intergenic | 35.0% |
AATATTATGTTACCGGACAC+CGG | - | chr2_3:18894747-18894766 | Msa0282580:intron | 35.0% | |
! | TGAGACGCCGTATATATTTT+TGG | + | chr2_3:18894912-18894931 | None:intergenic | 35.0% |
CAAAATCAAGTACGAATGGT+GGG | + | chr2_3:18895046-18895065 | None:intergenic | 35.0% | |
ACAAAATCAAGTACGAATGG+TGG | + | chr2_3:18895047-18895066 | None:intergenic | 35.0% | |
ATTCTGCTTGAACAATCCAT+CGG | - | chr2_3:18895400-18895419 | Msa0282580:CDS | 35.0% | |
TGATTCAGTTAGAAGAAGGT+GGG | + | chr2_3:18895432-18895451 | None:intergenic | 35.0% | |
ATGATTCAGTTAGAAGAAGG+TGG | + | chr2_3:18895433-18895452 | None:intergenic | 35.0% | |
GACATGATTCAGTTAGAAGA+AGG | + | chr2_3:18895436-18895455 | None:intergenic | 35.0% | |
ATCAAGAAGCTTAAGATGCA+AGG | - | chr2_3:18895474-18895493 | Msa0282580:intron | 35.0% | |
TCAAGAAGCTTAAGATGCAA+GGG | - | chr2_3:18895475-18895494 | Msa0282580:intron | 35.0% | |
AAAGACATTATCAGAGTTGG+AGG | + | chr2_3:18895568-18895587 | None:intergenic | 35.0% | |
GAAATGGCTTCTTTATATGC+TGG | - | chr2_3:18895607-18895626 | Msa0282580:CDS | 35.0% | |
! | TTTAGAGCATGCTTGTGAAT+GGG | + | chr2_3:18895835-18895854 | None:intergenic | 35.0% |
! | ATTTAGAGCATGCTTGTGAA+TGG | + | chr2_3:18895836-18895855 | None:intergenic | 35.0% |
! | ATTCACAAGCATGCTCTAAA+TGG | - | chr2_3:18895835-18895854 | Msa0282580:CDS | 35.0% |
TCAATAACTCCTTCACAAAG+TGG | + | chr2_3:18895972-18895991 | None:intergenic | 35.0% | |
AAGGAAGATGCAAAATGACA+TGG | - | chr2_3:18896166-18896185 | Msa0282580:intron | 35.0% | |
! | ACTAATTGAGAGACCGATTT+AGG | - | chr2_3:18896425-18896444 | Msa0282580:intron | 35.0% |
! | CTAATTGAGAGACCGATTTA+GGG | - | chr2_3:18896426-18896445 | Msa0282580:intron | 35.0% |
GGTGACAATGCTTAAGAAAA+AGG | - | chr2_3:18896558-18896577 | Msa0282580:intron | 35.0% | |
!!! | CTTGTTTTTTAACCCTTCTC+CGG | + | chr2_3:18896671-18896690 | None:intergenic | 35.0% |
AACGCAGACAAAAGAGTAAA+GGG | + | chr2_3:18896750-18896769 | None:intergenic | 35.0% | |
AAACGCAGACAAAAGAGTAA+AGG | + | chr2_3:18896751-18896770 | None:intergenic | 35.0% | |
TGAGCTAAATGTTAAGGAGT+TGG | + | chr2_3:18896887-18896906 | None:intergenic | 35.0% | |
! | CTGGTTTGAGCTAAATGTTA+AGG | + | chr2_3:18896893-18896912 | None:intergenic | 35.0% |
! | TATGAGCGATTTTCCATCAT+CGG | - | chr2_3:18897087-18897106 | Msa0282580:intron | 35.0% |
GAAATATCCCATGTTGTCTA+TGG | + | chr2_3:18897117-18897136 | None:intergenic | 35.0% | |
! | TTTAAGGCTAAGTCTGCAAT+TGG | + | chr2_3:18897183-18897202 | None:intergenic | 35.0% |
!! | TGCAGACTTAGCCTTAAAAA+TGG | - | chr2_3:18897185-18897204 | Msa0282580:intron | 35.0% |
ATGGGATTATGATCATGTTC+AGG | + | chr2_3:18897315-18897334 | None:intergenic | 35.0% | |
!! | TTACCAGGATTGGTCATTAT+GGG | + | chr2_3:18897333-18897352 | None:intergenic | 35.0% |
!! | TTTACCAGGATTGGTCATTA+TGG | + | chr2_3:18897334-18897353 | None:intergenic | 35.0% |
TTTAATGCAAAGGGTTTACC+AGG | + | chr2_3:18897348-18897367 | None:intergenic | 35.0% | |
GTAACCATATTTCGTATTGC+AGG | - | chr2_3:18897410-18897429 | Msa0282580:intron | 35.0% | |
! | AAATCACGTGGTTTTCCAAT+TGG | - | chr2_3:18897439-18897458 | Msa0282580:intron | 35.0% |
!!! | GTAGTGTTTTTCAAGAATCG+TGG | + | chr2_3:18897480-18897499 | None:intergenic | 35.0% |
AAAACACTACTCATCAAAGC+CGG | - | chr2_3:18897490-18897509 | Msa0282580:intron | 35.0% | |
ATATTTGATGCTGCAGAAGT+TGG | - | chr2_3:18897548-18897567 | Msa0282580:intron | 35.0% | |
GTGTTTATCCTAGCTTGATA+TGG | - | chr2_3:18897600-18897619 | Msa0282580:intron | 35.0% | |
TACACATAGCTGTATTGCAT+CGG | - | chr2_3:18897651-18897670 | Msa0282580:intron | 35.0% | |
CCTTTATATGCCCTATTTGA+TGG | + | chr2_3:18897700-18897719 | None:intergenic | 35.0% | |
CCATCAAATAGGGCATATAA+AGG | - | chr2_3:18897697-18897716 | Msa0282580:intron | 35.0% | |
CAGAAACACTTTATTGCACT+TGG | - | chr2_3:18897751-18897770 | Msa0282580:intron | 35.0% | |
! | AGTCAACTTGAATTGGTTTC+TGG | - | chr2_3:18897794-18897813 | Msa0282580:intron | 35.0% |
! | TATAGTGGAATGGATAAGTG+TGG | + | chr2_3:18897919-18897938 | None:intergenic | 35.0% |
TTTCTCATCTTTATCTGTGC+AGG | + | chr2_3:18898069-18898088 | None:intergenic | 35.0% | |
ATAAAGATGAGAAACTCGGA+AGG | - | chr2_3:18898075-18898094 | Msa0282580:intron | 35.0% | |
TGAAATTAGCATGCAAGACT+CGG | + | chr2_3:18898178-18898197 | None:intergenic | 35.0% | |
ATTTCAACTGTCATTGCTAC+CGG | - | chr2_3:18898192-18898211 | Msa0282580:intron | 35.0% | |
!! | CTATGTACAAAAGTATTGGG+AGG | + | chr2_3:18898548-18898567 | None:intergenic | 35.0% |
! | CTCCCAATACTTTTGTACAT+AGG | - | chr2_3:18898546-18898565 | Msa0282580:five_prime_UTR | 35.0% |
! | AGATAGAGTACTCCAATAGT+AGG | + | chr2_3:18898610-18898629 | None:intergenic | 35.0% |
TTTACGTACTAGAGAAGTAG+TGG | - | chr2_3:18898649-18898668 | Msa0282580:intron | 35.0% | |
TAATAACGATCCAATCTCGT+AGG | - | chr2_3:18898762-18898781 | Msa0282580:five_prime_UTR | 35.0% | |
! | TTTTATGCCAAATCGGCCAA+AGG | - | chr2_3:18891105-18891124 | Msa0282580:three_prime_UTR | 40.0% |
TTTATGCCAAATCGGCCAAA+GGG | - | chr2_3:18891106-18891125 | Msa0282580:three_prime_UTR | 40.0% | |
AAATGAAGGAGAGAAGAAGG+GGG | + | chr2_3:18891153-18891172 | None:intergenic | 40.0% | |
ACGCAACTAAAACGAGAAAG+AGG | + | chr2_3:18891202-18891221 | None:intergenic | 40.0% | |
CCTGGAGGAAATACGATAAA+AGG | + | chr2_3:18891477-18891496 | None:intergenic | 40.0% | |
! | CCTTTTATCGTATTTCCTCC+AGG | - | chr2_3:18891474-18891493 | Msa0282580:CDS | 40.0% |
TATCGTATTTCCTCCAGGTA+TGG | - | chr2_3:18891479-18891498 | Msa0282580:CDS | 40.0% | |
ACCAATCAAAATGGTACGGT+GGG | + | chr2_3:18891605-18891624 | None:intergenic | 40.0% | |
TAAGTTCGCAGTACTTTGCA+TGG | + | chr2_3:18891837-18891856 | None:intergenic | 40.0% | |
! | CGAACTTAGAGCATCTACAA+TGG | - | chr2_3:18891849-18891868 | Msa0282580:CDS | 40.0% |
ACAATGGTAGTTCCCTAACA+AGG | - | chr2_3:18891865-18891884 | Msa0282580:CDS | 40.0% | |
TATCACGTGGGGTCTATTTA+AGG | + | chr2_3:18891894-18891913 | None:intergenic | 40.0% | |
TCTCTCTCCTGAGTAACTAA+CGG | + | chr2_3:18892203-18892222 | None:intergenic | 40.0% | |
TTAGTTACTCAGGAGAGAGA+GGG | - | chr2_3:18892203-18892222 | Msa0282580:CDS | 40.0% | |
ATAGTTGCCTGTTCCTTAAC+GGG | - | chr2_3:18892233-18892252 | Msa0282580:CDS | 40.0% | |
GAAAAATTGAGTCCCCGTTA+AGG | + | chr2_3:18892249-18892268 | None:intergenic | 40.0% | |
GGAGTGATCCTTGTTAAGTA+AGG | - | chr2_3:18892295-18892314 | Msa0282580:CDS | 40.0% | |
!! | AAGTAAGAGCATCTCCAATG+GGG | + | chr2_3:18892324-18892343 | None:intergenic | 40.0% |
!! | CAAGTAAGAGCATCTCCAAT+GGG | + | chr2_3:18892325-18892344 | None:intergenic | 40.0% |
!! | ACAAGTAAGAGCATCTCCAA+TGG | + | chr2_3:18892326-18892345 | None:intergenic | 40.0% |
TACAGGGAGACATGTTAATG+GGG | - | chr2_3:18893082-18893101 | Msa0282580:intron | 40.0% | |
! | TAATGGGGCATCCACTAATA+AGG | - | chr2_3:18893097-18893116 | Msa0282580:intron | 40.0% |
TTCCACATAATTTACTGGCC+TGG | - | chr2_3:18893809-18893828 | Msa0282580:CDS | 40.0% | |
ATGGAAGCAATTATGGTGCT+AGG | + | chr2_3:18893871-18893890 | None:intergenic | 40.0% | |
GGTAATGATCAGTCCATGTA+AGG | - | chr2_3:18893922-18893941 | Msa0282580:CDS | 40.0% | |
AATGATCAGTCCATGTAAGG+GGG | - | chr2_3:18893925-18893944 | Msa0282580:CDS | 40.0% | |
GGAAACATACCATCATTTGC+AGG | - | chr2_3:18894062-18894081 | Msa0282580:CDS | 40.0% | |
!! | GAAGTATGGTGGCTTTGAAA+TGG | + | chr2_3:18894134-18894153 | None:intergenic | 40.0% |
TTTGTACCATCGAAGTATGG+TGG | + | chr2_3:18894145-18894164 | None:intergenic | 40.0% | |
CAGTTTGTACCATCGAAGTA+TGG | + | chr2_3:18894148-18894167 | None:intergenic | 40.0% | |
TCAAACGGCAAAGGAAATGT+GGG | - | chr2_3:18894402-18894421 | Msa0282580:intron | 40.0% | |
GGTGTCCGGTAACATAATAT+TGG | + | chr2_3:18894748-18894767 | None:intergenic | 40.0% | |
! | TAGGCTTTGTAGATTTGGAC+CGG | + | chr2_3:18894769-18894788 | None:intergenic | 40.0% |
GAGACATAGAAGAACTCTTC+TGG | + | chr2_3:18894806-18894825 | None:intergenic | 40.0% | |
!! | TATGTACTATGTTGGCTCAC+CGG | - | chr2_3:18894990-18895009 | Msa0282580:intron | 40.0% |
! | AGCATGCTCTAAATGGAAAC+TGG | - | chr2_3:18895842-18895861 | Msa0282580:CDS | 40.0% |
GCAGCAATATGCAATAGTGT+AGG | + | chr2_3:18895934-18895953 | None:intergenic | 40.0% | |
ACACTATTGCATATTGCTGC+AGG | - | chr2_3:18895934-18895953 | Msa0282580:intron | 40.0% | |
AAACCACATCCACTTTGTGA+AGG | - | chr2_3:18895960-18895979 | Msa0282580:intron | 40.0% | |
ATCGCATTGCAAGATGTCAA+CGG | - | chr2_3:18896012-18896031 | Msa0282580:intron | 40.0% | |
ACCCACTGTTACCTGTAAAA+AGG | - | chr2_3:18896103-18896122 | Msa0282580:intron | 40.0% | |
! | CCCTTTTTACAGGTAACAGT+GGG | + | chr2_3:18896107-18896126 | None:intergenic | 40.0% |
CCCACTGTTACCTGTAAAAA+GGG | - | chr2_3:18896104-18896123 | Msa0282580:intron | 40.0% | |
CCACTGTTACCTGTAAAAAG+GGG | - | chr2_3:18896105-18896124 | Msa0282580:intron | 40.0% | |
TGCAAAGCAGCATACTGAAT+AGG | + | chr2_3:18896147-18896166 | None:intergenic | 40.0% | |
!! | ATTCAGTATGCTGCTTTGCA+AGG | - | chr2_3:18896147-18896166 | Msa0282580:intron | 40.0% |
!!! | ATCGTTTTGAAGATGAGGAC+TGG | - | chr2_3:18896211-18896230 | Msa0282580:intron | 40.0% |
!!! | TCGTTTTGAAGATGAGGACT+GGG | - | chr2_3:18896212-18896231 | Msa0282580:intron | 40.0% |
TTCTTCGCTTGTATCTACAC+TGG | - | chr2_3:18896243-18896262 | Msa0282580:intron | 40.0% | |
TGTATCTACACTGGCATCTA+TGG | - | chr2_3:18896252-18896271 | Msa0282580:intron | 40.0% | |
CGGAGAAGGGTTAAAAAACA+AGG | - | chr2_3:18896669-18896688 | Msa0282580:intron | 40.0% | |
GTTGATTGGACAAAGCCAAT+AGG | + | chr2_3:18896981-18897000 | None:intergenic | 40.0% | |
!! | GTGATCAAATCGGTGTTGAT+TGG | + | chr2_3:18896995-18897014 | None:intergenic | 40.0% |
AGCTGAAACGGTGATCAAAT+CGG | + | chr2_3:18897005-18897024 | None:intergenic | 40.0% | |
ATATCCCATGTTGTCTATGG+TGG | + | chr2_3:18897114-18897133 | None:intergenic | 40.0% | |
AATCGAATGCCTTTGGATTC+TGG | - | chr2_3:18897279-18897298 | Msa0282580:intron | 40.0% | |
CAATGACAACCAGAATCCAA+AGG | + | chr2_3:18897291-18897310 | None:intergenic | 40.0% | |
AATCCCATAATGACCAATCC+TGG | - | chr2_3:18897327-18897346 | Msa0282580:intron | 40.0% | |
CATGCCTGCAATACGAAATA+TGG | + | chr2_3:18897417-18897436 | None:intergenic | 40.0% | |
! | GCTGCAGAAGTTGGAAATTT+TGG | - | chr2_3:18897557-18897576 | Msa0282580:intron | 40.0% |
GCATGCTAGTATATTCCATC+TGG | - | chr2_3:18897673-18897692 | Msa0282580:intron | 40.0% | |
TTCCATCTGGTCCATCAAAT+AGG | - | chr2_3:18897686-18897705 | Msa0282580:intron | 40.0% | |
TCCATCTGGTCCATCAAATA+GGG | - | chr2_3:18897687-18897706 | Msa0282580:intron | 40.0% | |
ACCACGAAGTCAACTTGAAT+TGG | - | chr2_3:18897787-18897806 | Msa0282580:intron | 40.0% | |
!! | ACCAATTCAAGTTGACTTCG+TGG | + | chr2_3:18897791-18897810 | None:intergenic | 40.0% |
AAATGTGCGTCGAGTTACTA+TGG | - | chr2_3:18897828-18897847 | Msa0282580:intron | 40.0% | |
TCTATTCTTGTCTCGCGTTA+TGG | - | chr2_3:18898360-18898379 | Msa0282580:intron | 40.0% | |
TATCTCCGTAACAAGCATGA+TGG | - | chr2_3:18898443-18898462 | Msa0282580:intron | 40.0% | |
! | TGCTACCATCATGCTTGTTA+CGG | + | chr2_3:18898451-18898470 | None:intergenic | 40.0% |
ATACTACCATGGTTCGACAT+TGG | - | chr2_3:18898494-18898513 | Msa0282580:intron | 40.0% | |
GGAAAAATGGTGCTTCCCTT+TGG | + | chr2_3:18891124-18891143 | None:intergenic | 45.0% | |
AAGGGGGTAGTGTGGAAAAA+TGG | + | chr2_3:18891137-18891156 | None:intergenic | 45.0% | |
GTTAAAGCAACCATACCTGG+AGG | + | chr2_3:18891492-18891511 | None:intergenic | 45.0% | |
!! | TCCCACCGTACCATTTTGAT+TGG | - | chr2_3:18891601-18891620 | Msa0282580:CDS | 45.0% |
CACCAATCAAAATGGTACGG+TGG | + | chr2_3:18891606-18891625 | None:intergenic | 45.0% | |
GTCAGAACTAGCAGAATCGA+AGG | + | chr2_3:18891720-18891739 | None:intergenic | 45.0% | |
!! | CTGCTAGTTCTGACTTCTGA+TGG | - | chr2_3:18891726-18891745 | Msa0282580:CDS | 45.0% |
GTTCTGACTTCTGATGGCTA+AGG | - | chr2_3:18891732-18891751 | Msa0282580:CDS | 45.0% | |
ACGTAGGGCATAATCCACAT+CGG | - | chr2_3:18891803-18891822 | Msa0282580:CDS | 45.0% | |
CTCTCTCCTGAGTAACTAAC+GGG | + | chr2_3:18892202-18892221 | None:intergenic | 45.0% | |
GTTAGTTACTCAGGAGAGAG+AGG | - | chr2_3:18892202-18892221 | Msa0282580:CDS | 45.0% | |
TAGTTGCCTGTTCCTTAACG+GGG | - | chr2_3:18892234-18892253 | Msa0282580:CDS | 45.0% | |
!! | AGTAAGAGCATCTCCAATGG+GGG | + | chr2_3:18892323-18892342 | None:intergenic | 45.0% |
AAGATTCCTTCCCCCTTACA+TGG | + | chr2_3:18893938-18893957 | None:intergenic | 45.0% | |
TCAAAGCCACCATACTTCGA+TGG | - | chr2_3:18894136-18894155 | Msa0282580:CDS | 45.0% | |
GTCAAACGGCAAAGGAAATG+TGG | - | chr2_3:18894401-18894420 | Msa0282580:intron | 45.0% | |
!! | ATGTACTATGTTGGCTCACC+GGG | - | chr2_3:18894991-18895010 | Msa0282580:intron | 45.0% |
ATTAGTCGTCCACCTTTGGT+GGG | + | chr2_3:18895170-18895189 | None:intergenic | 45.0% | |
CAGTTAGAAGAAGGTGGGAA+AGG | + | chr2_3:18895427-18895446 | None:intergenic | 45.0% | |
GCGTACTAGAGTAGACATGA+AGG | - | chr2_3:18895644-18895663 | Msa0282580:CDS | 45.0% | |
GCTTGTGAATGGGAACACAA+AGG | + | chr2_3:18895825-18895844 | None:intergenic | 45.0% | |
! | CTCTATGTCTAAGATGCGCT+TGG | + | chr2_3:18895875-18895894 | None:intergenic | 45.0% |
ATGCTGCCATAACAAATGGG+TGG | - | chr2_3:18895908-18895927 | Msa0282580:CDS | 45.0% | |
! | TGTAGGCCACCCATTTGTTA+TGG | + | chr2_3:18895917-18895936 | None:intergenic | 45.0% |
ACTCCTTCACAAAGTGGATG+TGG | + | chr2_3:18895966-18895985 | None:intergenic | 45.0% | |
TGCAGCAGCAAAGCAAAAAG+CGG | + | chr2_3:18896043-18896062 | None:intergenic | 45.0% | |
! | CCCCTTTTTACAGGTAACAG+TGG | + | chr2_3:18896108-18896127 | None:intergenic | 45.0% |
CTGTTACCTGTAAAAAGGGG+TGG | - | chr2_3:18896108-18896127 | Msa0282580:intron | 45.0% | |
ACCTGTAAAAAGGGGTGGAA+AGG | - | chr2_3:18896113-18896132 | Msa0282580:intron | 45.0% | |
CCTGTAAAAAGGGGTGGAAA+GGG | - | chr2_3:18896114-18896133 | Msa0282580:intron | 45.0% | |
TAACCCTTCTCCGGTCAATT+GGG | + | chr2_3:18896662-18896681 | None:intergenic | 45.0% | |
TTAACCCTTCTCCGGTCAAT+TGG | + | chr2_3:18896663-18896682 | None:intergenic | 45.0% | |
TTTGTTTGCGTTAGGGGGTT+TGG | + | chr2_3:18896924-18896943 | None:intergenic | 45.0% | |
AGAGACAGCTTTGCATCTCT+TGG | - | chr2_3:18897251-18897270 | Msa0282580:intron | 45.0% | |
GGCTCAAAATCGAATGCCTT+TGG | - | chr2_3:18897272-18897291 | Msa0282580:intron | 45.0% | |
TGCAAAGGGTTTACCAGGAT+TGG | + | chr2_3:18897343-18897362 | None:intergenic | 45.0% | |
TGCAGGCATGAAAAATCACG+TGG | - | chr2_3:18897427-18897446 | Msa0282580:intron | 45.0% | |
TCCTAGCTTGATATGGGATG+TGG | - | chr2_3:18897607-18897626 | Msa0282580:intron | 45.0% | |
TCCACATCCCATATCAAGCT+AGG | + | chr2_3:18897611-18897630 | None:intergenic | 45.0% | |
CGTCGAGTTACTATGGTTTG+AGG | - | chr2_3:18897835-18897854 | Msa0282580:intron | 45.0% | |
TAAGAGAAAACGCAGAGTCG+TGG | - | chr2_3:18898139-18898158 | Msa0282580:intron | 45.0% | |
! | GTGTGGTTTTCCAGAGTCAT+CGG | + | chr2_3:18898253-18898272 | None:intergenic | 45.0% |
TAGGAACCAATGTCGAACCA+TGG | + | chr2_3:18898503-18898522 | None:intergenic | 45.0% | |
! | TGGAGTACTCTATCTAAGCC+TGG | - | chr2_3:18898615-18898634 | Msa0282580:intron | 45.0% |
ACGATCCAATCTCGTAGGTA+TGG | - | chr2_3:18898767-18898786 | Msa0282580:five_prime_UTR | 45.0% | |
TCCAATCTCGTAGGTATGGT+CGG | - | chr2_3:18898771-18898790 | Msa0282580:five_prime_UTR | 45.0% | |
ACTTCAGCACTTCACCAATC+CGG | + | chr2_3:18898799-18898818 | None:intergenic | 45.0% | |
!!! | ATTGTATTTTTTTTTTTTTA+AGG | + | chr2_3:18893055-18893074 | None:intergenic | 5.0% |
GCATGGCTAAGATACCGATG+TGG | + | chr2_3:18891820-18891839 | None:intergenic | 50.0% | |
GTGTGACCCGTTAGTTACTC+AGG | - | chr2_3:18892193-18892212 | Msa0282580:CDS | 50.0% | |
TTGAGTCCCCGTTAAGGAAC+AGG | + | chr2_3:18892243-18892262 | None:intergenic | 50.0% | |
CAAGGATCACTCCCCGTTAA+GGG | + | chr2_3:18892288-18892307 | None:intergenic | 50.0% | |
ACAAGGATCACTCCCCGTTA+AGG | + | chr2_3:18892289-18892308 | None:intergenic | 50.0% | |
TGGGGGGTCCTTACTTAACA+AGG | + | chr2_3:18892306-18892325 | None:intergenic | 50.0% | |
GTTAAGTAAGGACCCCCCAT+TGG | - | chr2_3:18892307-18892326 | Msa0282580:CDS | 50.0% | |
!! | GTAAGAGCATCTCCAATGGG+GGG | + | chr2_3:18892322-18892341 | None:intergenic | 50.0% |
GGCCAGGCCAGTAAATTATG+TGG | + | chr2_3:18893814-18893833 | None:intergenic | 50.0% | |
! | CATAATTTACTGGCCTGGCC+TGG | - | chr2_3:18893814-18893833 | Msa0282580:CDS | 50.0% |
ATCAGTCCATGTAAGGGGGA+AGG | - | chr2_3:18893929-18893948 | Msa0282580:CDS | 50.0% | |
! | TGTGGTGATACTGGAGGTGT+AGG | + | chr2_3:18894573-18894592 | None:intergenic | 50.0% |
AGTGTCGTATAGAGCTGCTG+CGG | + | chr2_3:18894601-18894620 | None:intergenic | 50.0% | |
TGTAGATTTGGACCGGTGTC+CGG | + | chr2_3:18894762-18894781 | None:intergenic | 50.0% | |
! | ACCTTTGGTGGGTCGGAAAT+CGG | + | chr2_3:18895159-18895178 | None:intergenic | 50.0% |
! | GATTAGTCGTCCACCTTTGG+TGG | + | chr2_3:18895171-18895190 | None:intergenic | 50.0% |
CCAAAGGTGGACGACTAATC+CGG | - | chr2_3:18895171-18895190 | Msa0282580:intron | 50.0% | |
TTTAGCCAGTGGCACTCGAA+AGG | + | chr2_3:18895523-18895542 | None:intergenic | 50.0% | |
! | TTTTGCTTTGCTGCTGCAGC+TGG | - | chr2_3:18896045-18896064 | Msa0282580:intron | 50.0% |
! | CCCTTTCCACCCCTTTTTAC+AGG | + | chr2_3:18896117-18896136 | None:intergenic | 50.0% |
GAAACGGTAGCCCAATTGAC+CGG | - | chr2_3:18896649-18896668 | Msa0282580:intron | 50.0% | |
TAGCCCAATTGACCGGAGAA+GGG | - | chr2_3:18896656-18896675 | Msa0282580:intron | 50.0% | |
!! | TGTCTATGGTGGACCGATGA+TGG | + | chr2_3:18897103-18897122 | None:intergenic | 50.0% |
TCGGTCCACCATAGACAACA+TGG | - | chr2_3:18897106-18897125 | Msa0282580:intron | 50.0% | |
CGGTCCACCATAGACAACAT+GGG | - | chr2_3:18897107-18897126 | Msa0282580:intron | 50.0% | |
! | GCCCTATTTGATGGACCAGA+TGG | + | chr2_3:18897691-18897710 | None:intergenic | 50.0% |
AGTTGCAGCAGCAAACACTC+CGG | + | chr2_3:18898214-18898233 | None:intergenic | 50.0% | |
GCTGCTGCAACTACTTTACC+AGG | - | chr2_3:18898222-18898241 | Msa0282580:intron | 50.0% | |
GCTGCAACTACTTTACCAGG+CGG | - | chr2_3:18898225-18898244 | Msa0282580:intron | 50.0% | |
TTCAGCACTTCACCAATCCG+GGG | + | chr2_3:18898797-18898816 | None:intergenic | 50.0% | |
CTTCAGCACTTCACCAATCC+GGG | + | chr2_3:18898798-18898817 | None:intergenic | 50.0% | |
GTGCTTCCCTTTGGCCGATT+TGG | + | chr2_3:18891115-18891134 | None:intergenic | 55.0% | |
GAGAGAAGAAGGGGGTAGTG+TGG | + | chr2_3:18891145-18891164 | None:intergenic | 55.0% | |
AGCCACACGGATGTAGACGT+AGG | - | chr2_3:18891787-18891806 | Msa0282580:CDS | 55.0% | |
GCCACACGGATGTAGACGTA+GGG | - | chr2_3:18891788-18891807 | Msa0282580:CDS | 55.0% | |
CTCCAATGGAGGGCCCTTAA+CGG | - | chr2_3:18892272-18892291 | Msa0282580:CDS | 55.0% | |
TCCAATGGAGGGCCCTTAAC+GGG | - | chr2_3:18892273-18892292 | Msa0282580:CDS | 55.0% | |
CGATGCTTAACTCAAGGGCC+AGG | + | chr2_3:18893835-18893854 | None:intergenic | 55.0% | |
GGTGCTTGTGGTGATACTGG+AGG | + | chr2_3:18894579-18894598 | None:intergenic | 55.0% | |
GTGTCGTATAGAGCTGCTGC+GGG | + | chr2_3:18894600-18894619 | None:intergenic | 55.0% | |
! | ACCGATTTCCGACCCACCAA+AGG | - | chr2_3:18895155-18895174 | Msa0282580:intron | 55.0% |
GATTTCCGACCCACCAAAGG+TGG | - | chr2_3:18895158-18895177 | Msa0282580:intron | 55.0% | |
!! | CCGGATTAGTCGTCCACCTT+TGG | + | chr2_3:18895174-18895193 | None:intergenic | 55.0% |
CTAATCCGGCTCATGCGTAG+AGG | - | chr2_3:18895185-18895204 | Msa0282580:intron | 55.0% | |
ACATGCCTCTACGCATGAGC+CGG | + | chr2_3:18895193-18895212 | None:intergenic | 55.0% | |
! | ATGCGTAGAGGCATGTGCAC+TGG | - | chr2_3:18895197-18895216 | Msa0282580:intron | 55.0% |
AGAAGGTGGGAAAGGACCGA+TGG | + | chr2_3:18895419-18895438 | None:intergenic | 55.0% | |
! | CAACACCTTTCGAGTGCCAC+TGG | - | chr2_3:18895515-18895534 | Msa0282580:intron | 55.0% |
! | TCTAAGATGCGCTTGGCTGC+TGG | + | chr2_3:18895868-18895887 | None:intergenic | 55.0% |
TGCTGCTGCAGCTGGAAACA+TGG | - | chr2_3:18896053-18896072 | Msa0282580:intron | 55.0% | |
GTAGCCCAATTGACCGGAGA+AGG | - | chr2_3:18896655-18896674 | Msa0282580:intron | 55.0% | |
! | AGGGGGTTTGGTAGCTCAAC+TGG | + | chr2_3:18896912-18896931 | None:intergenic | 55.0% |
GCCGACCATACCTACGAGAT+TGG | + | chr2_3:18898775-18898794 | None:intergenic | 55.0% | |
GCCCTACGTCTACATCCGTG+TGG | + | chr2_3:18891792-18891811 | None:intergenic | 60.0% | |
CGTTAAGGGCCCTCCATTGG+AGG | + | chr2_3:18892274-18892293 | None:intergenic | 60.0% | |
CCAATGGAGGGCCCTTAACG+GGG | - | chr2_3:18892274-18892293 | Msa0282580:CDS | 60.0% | |
CTTAACTCAAGGGCCAGGCC+AGG | + | chr2_3:18893830-18893849 | None:intergenic | 60.0% | |
GCGGGTGCTTGTGGTGATAC+TGG | + | chr2_3:18894582-18894601 | None:intergenic | 60.0% | |
! | GTCGTCCACCTTTGGTGGGT+CGG | + | chr2_3:18895166-18895185 | None:intergenic | 60.0% |
CCCCGTTAAGGGCCCTCCAT+TGG | + | chr2_3:18892277-18892296 | None:intergenic | 65.0% | |
AGAGCTGCTGCGGGTGCTTG+TGG | + | chr2_3:18894591-18894610 | None:intergenic | 65.0% | |
CCAGAGTCATCGGTACCGCC+TGG | + | chr2_3:18898243-18898262 | None:intergenic | 65.0% | |
!! | CCAGGCGGTACCGATGACTC+TGG | - | chr2_3:18898240-18898259 | Msa0282580:intron | 65.0% |
CTCGTAGGTATGGTCGGCCC+CGG | - | chr2_3:18898777-18898796 | Msa0282580:five_prime_UTR | 65.0% | |
AGGTATGGTCGGCCCCGGAT+TGG | - | chr2_3:18898782-18898801 | Msa0282580:five_prime_UTR | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_3 | gene | 18891101 | 18898929 | 18891101 | ID=Msa0282580;Name=Msa0282580 |
chr2_3 | mRNA | 18891101 | 18898929 | 18891101 | ID=Msa0282580-mRNA-1;Parent=Msa0282580;Name=Msa0282580-mRNA-1;_AED=0.28;_eAED=0.28;_QI=303|1|1|1|0.71|0.62|8|261|708 |
chr2_3 | exon | 18891101 | 18891985 | 18891101 | ID=Msa0282580-mRNA-1:exon:7649;Parent=Msa0282580-mRNA-1 |
chr2_3 | exon | 18892174 | 18892598 | 18892174 | ID=Msa0282580-mRNA-1:exon:7648;Parent=Msa0282580-mRNA-1 |
chr2_3 | exon | 18892682 | 18892840 | 18892682 | ID=Msa0282580-mRNA-1:exon:7647;Parent=Msa0282580-mRNA-1 |
chr2_3 | exon | 18893757 | 18894236 | 18893757 | ID=Msa0282580-mRNA-1:exon:7646;Parent=Msa0282580-mRNA-1 |
chr2_3 | exon | 18895382 | 18895485 | 18895382 | ID=Msa0282580-mRNA-1:exon:7645;Parent=Msa0282580-mRNA-1 |
chr2_3 | exon | 18895593 | 18895946 | 18895593 | ID=Msa0282580-mRNA-1:exon:7644;Parent=Msa0282580-mRNA-1 |
chr2_3 | exon | 18898535 | 18898580 | 18898535 | ID=Msa0282580-mRNA-1:exon:7643;Parent=Msa0282580-mRNA-1 |
chr2_3 | exon | 18898692 | 18898929 | 18898692 | ID=Msa0282580-mRNA-1:exon:7642;Parent=Msa0282580-mRNA-1 |
chr2_3 | five_prime_UTR | 18898692 | 18898929 | 18898692 | ID=Msa0282580-mRNA-1:five_prime_utr;Parent=Msa0282580-mRNA-1 |
chr2_3 | five_prime_UTR | 18898535 | 18898580 | 18898535 | ID=Msa0282580-mRNA-1:five_prime_utr;Parent=Msa0282580-mRNA-1 |
chr2_3 | five_prime_UTR | 18895928 | 18895946 | 18895928 | ID=Msa0282580-mRNA-1:five_prime_utr;Parent=Msa0282580-mRNA-1 |
chr2_3 | CDS | 18895593 | 18895927 | 18895593 | ID=Msa0282580-mRNA-1:cds;Parent=Msa0282580-mRNA-1 |
chr2_3 | CDS | 18895382 | 18895485 | 18895382 | ID=Msa0282580-mRNA-1:cds;Parent=Msa0282580-mRNA-1 |
chr2_3 | CDS | 18893757 | 18894236 | 18893757 | ID=Msa0282580-mRNA-1:cds;Parent=Msa0282580-mRNA-1 |
chr2_3 | CDS | 18892682 | 18892840 | 18892682 | ID=Msa0282580-mRNA-1:cds;Parent=Msa0282580-mRNA-1 |
chr2_3 | CDS | 18892174 | 18892598 | 18892174 | ID=Msa0282580-mRNA-1:cds;Parent=Msa0282580-mRNA-1 |
chr2_3 | CDS | 18891362 | 18891985 | 18891362 | ID=Msa0282580-mRNA-1:cds;Parent=Msa0282580-mRNA-1 |
chr2_3 | three_prime_UTR | 18891101 | 18891361 | 18891101 | ID=Msa0282580-mRNA-1:three_prime_utr;Parent=Msa0282580-mRNA-1 |
Gene Sequence |
Protein sequence |