Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0204820 | XP_003595077.1 | 92.623 | 244 | 18 | 0 | 1 | 244 | 1 | 244 | 6.45e-165 | 465 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0204820 | sp|Q2HIV9|BH035_ARATH | 61.224 | 245 | 86 | 6 | 1 | 241 | 1 | 240 | 4.29e-91 | 271 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0204820 | G7IG90 | 92.623 | 244 | 18 | 0 | 1 | 244 | 1 | 244 | 3.08e-165 | 465 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0204820 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0204820 | Msa0204830 | 0.805986 | 1.024400e-49 | -8.615850e-47 |
| Msa0204820 | Msa0331970 | 0.824915 | 6.229957e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0204820 | MtrunA17_Chr2g0298751 | 92.623 | 244 | 18 | 0 | 1 | 244 | 1 | 244 | 5.93e-169 | 465 |
| Msa0204820 | MtrunA17_Chr8g0365711 | 30.588 | 170 | 110 | 2 | 51 | 220 | 243 | 404 | 2.75e-22 | 94.4 |
| Msa0204820 | MtrunA17_Chr1g0211081 | 32.911 | 237 | 128 | 7 | 6 | 213 | 258 | 492 | 5.18e-22 | 94.4 |
| Msa0204820 | MtrunA17_Chr2g0320291 | 29.319 | 191 | 112 | 4 | 51 | 236 | 132 | 304 | 7.38e-19 | 84.0 |
| Msa0204820 | MtrunA17_Chr3g0131691 | 32.258 | 186 | 112 | 5 | 48 | 227 | 294 | 471 | 1.70e-18 | 84.0 |
| Msa0204820 | MtrunA17_Chr7g0252041 | 33.158 | 190 | 114 | 6 | 49 | 232 | 283 | 465 | 8.20e-18 | 82.0 |
| Msa0204820 | MtrunA17_Chr4g0028071 | 31.707 | 164 | 95 | 3 | 51 | 211 | 148 | 297 | 4.12e-17 | 79.3 |
| Msa0204820 | MtrunA17_Chr7g0275821 | 60.000 | 55 | 22 | 0 | 53 | 107 | 253 | 307 | 2.50e-15 | 74.7 |
| Msa0204820 | MtrunA17_Chr5g0411341 | 30.000 | 150 | 103 | 2 | 53 | 202 | 494 | 641 | 1.12e-14 | 73.2 |
| Msa0204820 | MtrunA17_Chr8g0366751 | 29.487 | 156 | 96 | 3 | 53 | 202 | 463 | 610 | 1.41e-14 | 72.8 |
| Msa0204820 | MtrunA17_Chr7g0260841 | 29.714 | 175 | 86 | 4 | 53 | 227 | 356 | 493 | 1.99e-14 | 72.0 |
| Msa0204820 | MtrunA17_Chr2g0333611 | 23.902 | 205 | 124 | 4 | 27 | 214 | 3 | 192 | 4.16e-13 | 66.6 |
| Msa0204820 | MtrunA17_Chr8g0346161 | 60.000 | 45 | 18 | 0 | 53 | 97 | 292 | 336 | 5.40e-13 | 67.8 |
| Msa0204820 | MtrunA17_Chr8g0346151 | 60.000 | 45 | 18 | 0 | 53 | 97 | 280 | 324 | 7.27e-13 | 67.4 |
| Msa0204820 | MtrunA17_Chr4g0048851 | 29.341 | 167 | 98 | 3 | 50 | 215 | 45 | 192 | 2.47e-12 | 64.3 |
| Msa0204820 | MtrunA17_Chr8g0336681 | 27.108 | 166 | 107 | 4 | 53 | 214 | 157 | 312 | 3.69e-12 | 65.1 |
| Msa0204820 | MtrunA17_Chr2g0333641 | 27.273 | 198 | 114 | 6 | 53 | 242 | 138 | 313 | 6.29e-12 | 64.3 |
| Msa0204820 | MtrunA17_Chr4g0049331 | 30.556 | 180 | 91 | 7 | 53 | 204 | 136 | 309 | 1.20e-11 | 63.5 |
| Msa0204820 | MtrunA17_Chr5g0400661 | 26.257 | 179 | 109 | 6 | 53 | 219 | 150 | 317 | 1.56e-11 | 63.2 |
| Msa0204820 | MtrunA17_Chr1g0185621 | 50.909 | 55 | 27 | 0 | 43 | 97 | 466 | 520 | 1.74e-11 | 63.5 |
| Msa0204820 | MtrunA17_Chr3g0141091 | 55.882 | 68 | 29 | 1 | 48 | 115 | 169 | 235 | 3.41e-11 | 62.4 |
| Msa0204820 | MtrunA17_Chr2g0280161 | 49.091 | 55 | 28 | 0 | 53 | 107 | 178 | 232 | 4.26e-11 | 62.0 |
| Msa0204820 | MtrunA17_Chr5g0400621 | 39.189 | 74 | 42 | 1 | 37 | 107 | 139 | 212 | 6.08e-11 | 61.6 |
| Msa0204820 | MtrunA17_Chr5g0411541 | 34.810 | 158 | 81 | 4 | 48 | 205 | 152 | 287 | 9.45e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0204820 | AT5G57150.1 | 62.295 | 244 | 84 | 6 | 1 | 241 | 1 | 239 | 2.57e-93 | 275 |
| Msa0204820 | AT4G29930.1 | 54.400 | 250 | 100 | 3 | 1 | 238 | 1 | 248 | 9.53e-90 | 266 |
| Msa0204820 | AT4G29930.6 | 54.167 | 240 | 90 | 2 | 1 | 238 | 1 | 222 | 1.04e-86 | 257 |
| Msa0204820 | AT4G29930.2 | 54.167 | 240 | 87 | 3 | 1 | 238 | 1 | 219 | 5.08e-86 | 255 |
| Msa0204820 | AT5G57150.5 | 64.679 | 218 | 69 | 6 | 1 | 215 | 1 | 213 | 1.57e-83 | 249 |
| Msa0204820 | AT5G57150.3 | 63.470 | 219 | 71 | 6 | 1 | 215 | 1 | 214 | 2.22e-82 | 246 |
| Msa0204820 | AT5G57150.2 | 62.896 | 221 | 73 | 6 | 1 | 217 | 1 | 216 | 2.33e-82 | 246 |
| Msa0204820 | AT5G57150.4 | 63.470 | 219 | 71 | 6 | 1 | 215 | 1 | 214 | 6.73e-81 | 243 |
| Msa0204820 | AT4G29930.3 | 54.386 | 228 | 90 | 3 | 1 | 216 | 1 | 226 | 6.64e-80 | 241 |
| Msa0204820 | AT4G29930.7 | 54.386 | 228 | 90 | 3 | 1 | 216 | 1 | 226 | 6.64e-80 | 241 |
| Msa0204820 | AT4G29930.5 | 54.128 | 218 | 77 | 3 | 1 | 216 | 1 | 197 | 4.17e-76 | 230 |
| Msa0204820 | AT4G29930.4 | 53.714 | 175 | 67 | 3 | 1 | 163 | 1 | 173 | 8.94e-54 | 172 |
| Msa0204820 | AT1G12860.1 | 34.225 | 187 | 110 | 6 | 49 | 232 | 264 | 440 | 9.33e-20 | 87.8 |
| Msa0204820 | AT3G26744.1 | 32.979 | 188 | 115 | 5 | 49 | 232 | 304 | 484 | 5.39e-19 | 85.9 |
| Msa0204820 | AT3G26744.4 | 32.979 | 188 | 115 | 5 | 49 | 232 | 304 | 484 | 5.39e-19 | 85.9 |
| Msa0204820 | AT3G26744.2 | 32.979 | 188 | 115 | 5 | 49 | 232 | 304 | 484 | 5.39e-19 | 85.9 |
| Msa0204820 | AT2G28160.2 | 31.646 | 158 | 92 | 4 | 51 | 205 | 130 | 274 | 3.66e-17 | 79.3 |
| Msa0204820 | AT3G26744.6 | 35.185 | 162 | 94 | 5 | 49 | 206 | 304 | 458 | 4.35e-17 | 80.5 |
| Msa0204820 | AT2G16910.1 | 28.638 | 213 | 131 | 5 | 51 | 244 | 313 | 523 | 4.66e-17 | 80.5 |
| Msa0204820 | AT2G28160.1 | 31.646 | 158 | 92 | 4 | 51 | 205 | 130 | 274 | 5.03e-17 | 79.3 |
| Msa0204820 | AT1G01260.1 | 31.395 | 172 | 83 | 4 | 53 | 224 | 434 | 570 | 7.02e-17 | 79.7 |
| Msa0204820 | AT1G01260.2 | 31.395 | 172 | 83 | 4 | 53 | 224 | 434 | 570 | 7.02e-17 | 79.7 |
| Msa0204820 | AT1G01260.3 | 31.395 | 172 | 83 | 4 | 53 | 224 | 434 | 570 | 7.02e-17 | 79.7 |
| Msa0204820 | AT1G12860.2 | 35.404 | 161 | 91 | 6 | 49 | 206 | 264 | 414 | 1.44e-16 | 78.6 |
| Msa0204820 | AT2G46510.1 | 61.818 | 55 | 21 | 0 | 53 | 107 | 396 | 450 | 5.16e-16 | 77.4 |
| Msa0204820 | AT5G46760.1 | 29.570 | 186 | 114 | 7 | 53 | 233 | 416 | 589 | 9.61e-16 | 76.6 |
| Msa0204820 | AT4G17880.1 | 31.481 | 162 | 74 | 5 | 53 | 202 | 417 | 553 | 3.55e-15 | 74.7 |
| Msa0204820 | AT4G16430.1 | 46.053 | 76 | 40 | 1 | 53 | 127 | 321 | 396 | 9.78e-15 | 73.6 |
| Msa0204820 | AT1G32640.1 | 31.333 | 150 | 91 | 3 | 53 | 202 | 453 | 590 | 1.29e-14 | 73.2 |
| Msa0204820 | AT5G46830.1 | 27.473 | 182 | 111 | 3 | 53 | 228 | 344 | 510 | 3.28e-13 | 68.9 |
| Msa0204820 | AT1G63650.3 | 30.675 | 163 | 106 | 3 | 56 | 212 | 409 | 570 | 7.40e-13 | 68.2 |
| Msa0204820 | AT1G63650.1 | 30.675 | 163 | 106 | 3 | 56 | 212 | 409 | 570 | 7.40e-13 | 68.2 |
| Msa0204820 | AT1G63650.2 | 30.675 | 163 | 106 | 3 | 56 | 212 | 409 | 570 | 7.40e-13 | 68.2 |
| Msa0204820 | AT4G21330.1 | 30.357 | 168 | 107 | 4 | 51 | 218 | 31 | 188 | 1.00e-12 | 65.5 |
| Msa0204820 | AT4G37850.2 | 30.286 | 175 | 102 | 6 | 53 | 223 | 153 | 311 | 1.26e-12 | 66.6 |
| Msa0204820 | AT4G37850.1 | 30.286 | 175 | 102 | 6 | 53 | 223 | 153 | 311 | 1.26e-12 | 66.6 |
| Msa0204820 | AT1G10610.1 | 29.310 | 174 | 104 | 4 | 51 | 219 | 263 | 422 | 6.36e-12 | 65.1 |
| Msa0204820 | AT1G10610.3 | 29.310 | 174 | 104 | 4 | 51 | 219 | 166 | 325 | 7.27e-12 | 64.7 |
| Msa0204820 | AT1G10610.2 | 29.310 | 174 | 104 | 4 | 51 | 219 | 233 | 392 | 7.88e-12 | 64.7 |
| Msa0204820 | AT4G00870.1 | 43.333 | 60 | 34 | 0 | 53 | 112 | 250 | 309 | 2.07e-11 | 63.5 |
| Msa0204820 | AT2G22770.1 | 24.352 | 193 | 116 | 3 | 33 | 209 | 113 | 291 | 7.80e-11 | 61.6 |
Find 70 sgRNAs with CRISPR-Local
Find 318 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAAGGTGGTTGGTTTATT+TGG | 0.165944 | 2_1:-30728870 | None:intergenic |
| TTGTGGATCTATATCGATTT+AGG | 0.197301 | 2_1:+30734342 | Msa0204820:three_prime_UTR |
| CTGATCTGTTCTCTTCTTCT+TGG | 0.200519 | 2_1:-30730075 | None:intergenic |
| TAGCAAAACTCCTTAATAAT+TGG | 0.235419 | 2_1:-30734239 | None:intergenic |
| TGATGATTGAAAGAAGTTTA+AGG | 0.235606 | 2_1:-30728886 | None:intergenic |
| GGATAAAGCTTCAATTATTA+AGG | 0.255192 | 2_1:+30729914 | Msa0204820:CDS |
| ACCTATCAAGCTCTTGGGTT+TGG | 0.289916 | 2_1:-30729012 | None:intergenic |
| ATGGTTGTTAAAGTTGAAAT+TGG | 0.301895 | 2_1:-30728938 | None:intergenic |
| GTGATGAGTACAAGCTTTAC+TGG | 0.315934 | 2_1:+30728972 | Msa0204820:CDS |
| TAGATTGGATTAATACTATT+AGG | 0.340877 | 2_1:-30730017 | None:intergenic |
| GCATTTCATTAGATGCTCAT+AGG | 0.341879 | 2_1:-30734088 | None:intergenic |
| GAGATAATGGAACTTGAATC+TGG | 0.344427 | 2_1:+30729990 | Msa0204820:CDS |
| ATGTTTACCTTGCTAATGTT+TGG | 0.350291 | 2_1:-30729292 | None:intergenic |
| TGTTTACCTTGCTAATGTTT+GGG | 0.357210 | 2_1:-30729291 | None:intergenic |
| GATTATTCAAGCAGAGATAA+TGG | 0.360892 | 2_1:+30729977 | Msa0204820:CDS |
| TGAGAGCTGCAACGGCTGTT+TGG | 0.367368 | 2_1:-30734051 | None:intergenic |
| TTTACCTCAAGAACTTCAAT+TGG | 0.370892 | 2_1:-30730128 | None:intergenic |
| ATAACATGTTAAGAAATAAA+TGG | 0.379183 | 2_1:-30734288 | None:intergenic |
| AGCCACTAGTATATAAGTAT+TGG | 0.383506 | 2_1:+30734133 | Msa0204820:three_prime_UTR |
| ATTGTTACCTATCAAGCTCT+TGG | 0.383647 | 2_1:-30729018 | None:intergenic |
| CCTGATGATGCTGCACCATC+GGG | 0.391505 | 2_1:-30729187 | None:intergenic |
| GCCACTAGTATATAAGTATT+GGG | 0.404265 | 2_1:+30734134 | Msa0204820:three_prime_UTR |
| TAGATGCTCATAGGGCTTAG+AGG | 0.411365 | 2_1:-30734079 | None:intergenic |
| TTGTGGTTGCAGCTGGGGAT+TGG | 0.412240 | 2_1:+30729129 | Msa0204820:intron |
| TTGTTACCTATCAAGCTCTT+GGG | 0.420680 | 2_1:-30729017 | None:intergenic |
| TCCTGATGATGCTGCACCAT+CGG | 0.430185 | 2_1:-30729188 | None:intergenic |
| TCCAAACCCAAGAGCTTGAT+AGG | 0.430262 | 2_1:+30729011 | Msa0204820:CDS |
| CATTTCATTAGATGCTCATA+GGG | 0.433690 | 2_1:-30734087 | None:intergenic |
| CCCGATGGTGCAGCATCATC+AGG | 0.443280 | 2_1:+30729187 | Msa0204820:CDS |
| TGAAAGAAGTTTAAGGTGGT+TGG | 0.451251 | 2_1:-30728879 | None:intergenic |
| TATCAAGCTCTTGGGTTTGG+AGG | 0.453409 | 2_1:-30729009 | None:intergenic |
| AATTGAGTAGGAAGAAGAAA+GGG | 0.460818 | 2_1:-30734214 | None:intergenic |
| TCTTGATCAAAATCATAGAT+TGG | 0.462231 | 2_1:-30730032 | None:intergenic |
| TGAGCTTGACATGTAACAAA+AGG | 0.468788 | 2_1:+30730738 | Msa0204820:CDS |
| GTTGTTAAAGTTGAAATTGG+AGG | 0.484698 | 2_1:-30728935 | None:intergenic |
| TCACTATATATATACAAAGT+AGG | 0.497510 | 2_1:+30728833 | None:intergenic |
| AAATTGAGTAGGAAGAAGAA+AGG | 0.501022 | 2_1:-30734215 | None:intergenic |
| TGATGAACTGCTATGAAAAT+CGG | 0.502899 | 2_1:-30734175 | None:intergenic |
| GCAGCTTAGGGTTACATACA+TGG | 0.504078 | 2_1:+30730697 | Msa0204820:intron |
| CTTTCCAATTGAAGTTCTTG+AGG | 0.510871 | 2_1:+30730124 | Msa0204820:CDS |
| ACATTGACTCTGAGAGGAAG+AGG | 0.514432 | 2_1:+30729224 | Msa0204820:CDS |
| AGTATATAAGTATTGGGTTG+AGG | 0.521733 | 2_1:+30734140 | Msa0204820:three_prime_UTR |
| AAGAGCTTCCTGTGTTGCTA+AGG | 0.527358 | 2_1:+30730051 | Msa0204820:CDS |
| TTGGGTTTGGAGGAACATGT+TGG | 0.533281 | 2_1:-30728999 | None:intergenic |
| AATTTCAACTTTAACAACCA+TGG | 0.540733 | 2_1:+30728940 | Msa0204820:exon |
| GAGCTTGACATGTAACAAAA+GGG | 0.547151 | 2_1:+30730739 | Msa0204820:CDS |
| TTCTTGGACCTTAGCAACAC+AGG | 0.566724 | 2_1:-30730059 | None:intergenic |
| CTCATCACCAATGTTCTCCA+TGG | 0.572679 | 2_1:-30728957 | None:intergenic |
| AGGGTCATTGAGAGCTGCAA+CGG | 0.580316 | 2_1:-30734059 | None:intergenic |
| AGATGCTCATAGGGCTTAGA+GGG | 0.580755 | 2_1:-30734078 | None:intergenic |
| TGATGATGCTGCACCATCGG+GGG | 0.580991 | 2_1:-30729185 | None:intergenic |
| TAATAATTGGAAAATTGAGT+AGG | 0.581054 | 2_1:-30734226 | None:intergenic |
| TGATGAGTACAAGCTTTACT+GGG | 0.584970 | 2_1:+30728973 | Msa0204820:CDS |
| TTTGAAGACAGTCTTCATTG+AGG | 0.586246 | 2_1:+30730850 | Msa0204820:CDS |
| AGATAATGGAACTTGAATCT+GGG | 0.592460 | 2_1:+30729991 | Msa0204820:CDS |
| TTAACAACCATGGAGAACAT+TGG | 0.592898 | 2_1:+30728950 | Msa0204820:exon |
| ACCCAATACTTATATACTAG+TGG | 0.593092 | 2_1:-30734135 | None:intergenic |
| ATTGAGTAGGAAGAAGAAAG+GGG | 0.596958 | 2_1:-30734213 | None:intergenic |
| CTAAGAACATTGACTCTGAG+AGG | 0.615826 | 2_1:+30729218 | Msa0204820:CDS |
| TTGAGTAGGAAGAAGAAAGG+GGG | 0.617979 | 2_1:-30734212 | None:intergenic |
| TTGACTCTGAGAGGAAGAGG+AGG | 0.620990 | 2_1:+30729227 | Msa0204820:CDS |
| TAACAAAAGGGCAGACACAA+TGG | 0.621554 | 2_1:+30730751 | Msa0204820:CDS |
| ACTCTTTGCACTTAGAGCAG+TGG | 0.626022 | 2_1:+30729267 | Msa0204820:CDS |
| CAGCTTAGGGTTACATACAT+GGG | 0.636587 | 2_1:+30730698 | Msa0204820:intron |
| CTATGAAAATCGGAAAGCCA+CGG | 0.645370 | 2_1:-30734165 | None:intergenic |
| CTGATGATGCTGCACCATCG+GGG | 0.660135 | 2_1:-30729186 | None:intergenic |
| AGTGGTCCCAAACATTAGCA+AGG | 0.661525 | 2_1:+30729285 | Msa0204820:CDS |
| AGTATTGGGTTGAGGAACCG+TGG | 0.669067 | 2_1:+30734148 | Msa0204820:three_prime_UTR |
| TGATTGAAAGAAGTTTAAGG+TGG | 0.686687 | 2_1:-30728883 | None:intergenic |
| ATACATGGGAGAGAATACAA+TGG | 0.777577 | 2_1:+30730712 | Msa0204820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATTAATAATTAAATAA+TGG | - | chr2_1:30729334-30729353 | None:intergenic | 0.0% |
| !!! | ATATTTTAATTTTTAATATT+CGG | + | chr2_1:30732827-30732846 | Msa0204820:intron | 0.0% |
| !!! | TTTTAAAAAAAAATTATTTT+TGG | + | chr2_1:30733003-30733022 | Msa0204820:intron | 0.0% |
| !!! | TTATAATATTTTTTTTTTTT+TGG | - | chr2_1:30733677-30733696 | None:intergenic | 0.0% |
| !!! | TAGGTAATTTAATTTTTTAA+GGG | + | chr2_1:30729559-30729578 | Msa0204820:intron | 10.0% |
| !! | TCCAATTTAAAAAAAAAAAA+AGG | + | chr2_1:30730241-30730260 | Msa0204820:intron | 10.0% |
| !!! | TCCTTTTTTTTTTTTTAAAT+TGG | - | chr2_1:30730245-30730264 | None:intergenic | 10.0% |
| !!! | TTCTTTTTTTTTTTTTTTTG+AGG | - | chr2_1:30731888-30731907 | None:intergenic | 10.0% |
| !! | CAAAAAAAAAAAAAAATTAC+AGG | - | chr2_1:30732008-30732027 | None:intergenic | 10.0% |
| !!! | AAAAATATATATTTTACAGA+GGG | - | chr2_1:30732036-30732055 | None:intergenic | 10.0% |
| !!! | AAAAAATATATATTTTACAG+AGG | - | chr2_1:30732037-30732056 | None:intergenic | 10.0% |
| !! | TCTTGAAAAAAAAATAAAAT+TGG | + | chr2_1:30732094-30732113 | Msa0204820:intron | 10.0% |
| !! | GTAAATAAAAAAAAATTACA+GGG | + | chr2_1:30732138-30732157 | Msa0204820:intron | 10.0% |
| !! | TAAATAAAAAAAAATTACAG+GGG | + | chr2_1:30732139-30732158 | Msa0204820:intron | 10.0% |
| !!! | AATCAAAAAAAATATTTTAC+AGG | + | chr2_1:30732166-30732185 | Msa0204820:intron | 10.0% |
| !!! | ATCAAAAAAAATATTTTACA+GGG | + | chr2_1:30732167-30732186 | Msa0204820:intron | 10.0% |
| !! | ATTCTAATTATTATATGTAT+AGG | + | chr2_1:30732400-30732419 | Msa0204820:intron | 10.0% |
| !! | AAAAAAAAAAAAAGGAAAAT+AGG | + | chr2_1:30732687-30732706 | Msa0204820:intron | 10.0% |
| !! | TAAAAATTAAAATATGAATG+TGG | - | chr2_1:30732822-30732841 | None:intergenic | 10.0% |
| !!! | CATTAATAAATACTTTTTAA+GGG | - | chr2_1:30732892-30732911 | None:intergenic | 10.0% |
| !!! | ACATTAATAAATACTTTTTA+AGG | - | chr2_1:30732893-30732912 | None:intergenic | 10.0% |
| !!! | TATGTTTCATTTTATATTAT+AGG | - | chr2_1:30733268-30733287 | None:intergenic | 10.0% |
| !!! | ATTATTAAGTACTATTTTTT+TGG | - | chr2_1:30733388-30733407 | None:intergenic | 10.0% |
| !! | AAAAATATTATAACTTATCA+TGG | + | chr2_1:30733684-30733703 | Msa0204820:intron | 10.0% |
| !! | AAAAAAAAGAAAAAAATGAA+AGG | + | chr2_1:30733917-30733936 | Msa0204820:intron | 10.0% |
| !!! | TGCTTATATTTTATTACAAA+CGG | + | chr2_1:30729508-30729527 | Msa0204820:intron | 15.0% |
| !!! | GTAGGTAATTTAATTTTTTA+AGG | + | chr2_1:30729558-30729577 | Msa0204820:intron | 15.0% |
| !!! | ATTTCCTATTTTTTTTAAGT+TGG | - | chr2_1:30730270-30730289 | None:intergenic | 15.0% |
| !! | GTTAGCAAAAAAAAAAATAA+TGG | - | chr2_1:30730505-30730524 | None:intergenic | 15.0% |
| !!! | TTGTTGTTTTATATTATTTG+AGG | - | chr2_1:30731018-30731037 | None:intergenic | 15.0% |
| !! | TATTAACCTAATCATTTATA+AGG | - | chr2_1:30731942-30731961 | None:intergenic | 15.0% |
| !! | TTATAAATGATTAGGTTAAT+AGG | + | chr2_1:30731941-30731960 | Msa0204820:intron | 15.0% |
| !!! | AAATAAAATTGGTTTTTGTT+TGG | + | chr2_1:30732105-30732124 | Msa0204820:intron | 15.0% |
| !! | GGTAAATAAAAAAAAATTAC+AGG | + | chr2_1:30732137-30732156 | Msa0204820:intron | 15.0% |
| !! | AAATAAAAAAAAATTACAGG+GGG | + | chr2_1:30732140-30732159 | Msa0204820:intron | 15.0% |
| !!! | TCAAAAAAAATATTTTACAG+GGG | + | chr2_1:30732168-30732187 | Msa0204820:intron | 15.0% |
| !! | TTTCCTCAAAAAAAAAAAAA+AGG | + | chr2_1:30732679-30732698 | Msa0204820:intron | 15.0% |
| !!! | TTTCCTTTTTTTTTTTTTTG+AGG | - | chr2_1:30732685-30732704 | None:intergenic | 15.0% |
| !!! | AAATTTAACTTATTTAGCAT+AGG | + | chr2_1:30733174-30733193 | Msa0204820:intron | 15.0% |
| !!! | ATTTTATTTTTGGTTACAAT+TGG | - | chr2_1:30733423-30733442 | None:intergenic | 15.0% |
| !!! | TTAATTTTGAAATGTTGAAT+TGG | - | chr2_1:30733455-30733474 | None:intergenic | 15.0% |
| !! | ATAACATGTTAAGAAATAAA+TGG | - | chr2_1:30734291-30734310 | None:intergenic | 15.0% |
| !!! | ATTAGTACTACTCAATTTTT+TGG | + | chr2_1:30729351-30729370 | Msa0204820:intron | 20.0% |
| !!! | TTAGTACTACTCAATTTTTT+GGG | + | chr2_1:30729352-30729371 | Msa0204820:intron | 20.0% |
| !!! | TTTGTTTGAATTAAGTGTTT+TGG | + | chr2_1:30729401-30729420 | Msa0204820:intron | 20.0% |
| !!! | TTGTTTGAATTAAGTGTTTT+GGG | + | chr2_1:30729402-30729421 | Msa0204820:intron | 20.0% |
| !! | CTACTATCTTCATAAAATAT+AGG | + | chr2_1:30729431-30729450 | Msa0204820:intron | 20.0% |
| !! | CTAACAACATGTTTAAAAAA+TGG | - | chr2_1:30729755-30729774 | None:intergenic | 20.0% |
| !!! | TTTTTTAAACATGTTGTTAG+AGG | + | chr2_1:30729755-30729774 | Msa0204820:intron | 20.0% |
| !! | GAAATAATTAAACCATATGA+TGG | - | chr2_1:30729827-30729846 | None:intergenic | 20.0% |
| !! | AATTTCTTTCTAATTATGAG+TGG | + | chr2_1:30729868-30729887 | Msa0204820:intron | 20.0% |
| !! | TAGATTGGATTAATACTATT+AGG | - | chr2_1:30730020-30730039 | None:intergenic | 20.0% |
| !! | GAAACCAACTTAAAAAAAAT+AGG | + | chr2_1:30730263-30730282 | Msa0204820:intron | 20.0% |
| !! | AACTTCAAAAAAATAGATAG+TGG | + | chr2_1:30730330-30730349 | Msa0204820:intron | 20.0% |
| !! | ACTTCAAAAAAATAGATAGT+GGG | + | chr2_1:30730331-30730350 | Msa0204820:intron | 20.0% |
| !!! | TCTTTAATCTATTTGTTGTT+GGG | - | chr2_1:30730536-30730555 | None:intergenic | 20.0% |
| !!! | TTCTTTAATCTATTTGTTGT+TGG | - | chr2_1:30730537-30730556 | None:intergenic | 20.0% |
| !! | TGATGCTAAAAAAATAAATG+TGG | + | chr2_1:30730591-30730610 | Msa0204820:intron | 20.0% |
| !! | GATGCTAAAAAAATAAATGT+GGG | + | chr2_1:30730592-30730611 | Msa0204820:intron | 20.0% |
| !! | ATGCTAAAAAAATAAATGTG+GGG | + | chr2_1:30730593-30730612 | Msa0204820:intron | 20.0% |
| !! | AGAAAGTGAAATGAAATTAA+AGG | - | chr2_1:30730888-30730907 | None:intergenic | 20.0% |
| !! | ACTTGTAATAGAAAAATGTT+TGG | - | chr2_1:30731073-30731092 | None:intergenic | 20.0% |
| !!! | TATGCTTTTAATTTTTGTGT+TGG | - | chr2_1:30731105-30731124 | None:intergenic | 20.0% |
| !! | TACAACATGAATATTAAAAC+TGG | + | chr2_1:30731134-30731153 | Msa0204820:intron | 20.0% |
| !! | ACTGGAATTTAGATAAATTT+AGG | + | chr2_1:30731152-30731171 | Msa0204820:intron | 20.0% |
| !! | CTGGAATTTAGATAAATTTA+GGG | + | chr2_1:30731153-30731172 | Msa0204820:intron | 20.0% |
| !!! | TCATTACTTTTTGTAAACTT+TGG | + | chr2_1:30731232-30731251 | Msa0204820:intron | 20.0% |
| !!! | TATCTGAATTTATCTCTTTT+TGG | - | chr2_1:30731334-30731353 | None:intergenic | 20.0% |
| !! | GTAAATATAATATGTGTTGT+TGG | + | chr2_1:30731419-30731438 | Msa0204820:intron | 20.0% |
| !!! | TTGTGTTACCTTATTTATTT+CGG | + | chr2_1:30731542-30731561 | Msa0204820:intron | 20.0% |
| !! | TTATGACCTTATAAATGATT+AGG | + | chr2_1:30731933-30731952 | Msa0204820:intron | 20.0% |
| !!! | AAGAAATTTTCGTTTTTGTT+TGG | - | chr2_1:30732078-30732097 | None:intergenic | 20.0% |
| !!! | TTTTTTTATTTACCCCTAAT+AGG | - | chr2_1:30732131-30732150 | None:intergenic | 20.0% |
| !! | AATAAAAAAAAATTACAGGG+GGG | + | chr2_1:30732141-30732160 | Msa0204820:intron | 20.0% |
| !!! | CAAAAAAAATATTTTACAGG+GGG | + | chr2_1:30732169-30732188 | Msa0204820:intron | 20.0% |
| !!! | AAAAAAAATATTTTACAGGG+GGG | + | chr2_1:30732170-30732189 | Msa0204820:intron | 20.0% |
| !! | ATAAAAAAGAGTTGAATCAT+GGG | - | chr2_1:30732240-30732259 | None:intergenic | 20.0% |
| !! | AATAAAAAAGAGTTGAATCA+TGG | - | chr2_1:30732241-30732260 | None:intergenic | 20.0% |
| !! | ATTAGAATAATCCATTTCTA+TGG | - | chr2_1:30732388-30732407 | None:intergenic | 20.0% |
| !! | AATGTGTGCATAATTAATAT+TGG | + | chr2_1:30732538-30732557 | Msa0204820:intron | 20.0% |
| !!! | TATTTTCCTATTTTGTGAAA+AGG | - | chr2_1:30732657-30732676 | None:intergenic | 20.0% |
| !!! | TTTTCACAAAATAGGAAAAT+AGG | + | chr2_1:30732656-30732675 | Msa0204820:intron | 20.0% |
| !!! | AAGTCAAAAGAGAAAATTTT+AGG | - | chr2_1:30733029-30733048 | None:intergenic | 20.0% |
| !!! | GAGAGATAGAATTTTATTTT+TGG | - | chr2_1:30733433-30733452 | None:intergenic | 20.0% |
| !! | AGAATTTAGAAGGAATAAAA+AGG | - | chr2_1:30733538-30733557 | None:intergenic | 20.0% |
| !! | TTATTCCTTCTAAATTCTAA+TGG | + | chr2_1:30733540-30733559 | Msa0204820:intron | 20.0% |
| !! | ATAATCCATTAGAATTTAGA+AGG | - | chr2_1:30733548-30733567 | None:intergenic | 20.0% |
| !!! | CTAAATTCTAATGGATTATT+TGG | + | chr2_1:30733549-30733568 | Msa0204820:intron | 20.0% |
| !! | TTTAACTAAAAAATATGGAC+TGG | - | chr2_1:30733631-30733650 | None:intergenic | 20.0% |
| !!! | ATTATGAGGTACTTTTTATA+GGG | - | chr2_1:30733754-30733773 | None:intergenic | 20.0% |
| !!! | AATTATGAGGTACTTTTTAT+AGG | - | chr2_1:30733755-30733774 | None:intergenic | 20.0% |
| !! | TATTACAATGACAAATTATG+AGG | - | chr2_1:30733768-30733787 | None:intergenic | 20.0% |
| !!! | TTTTAATTCAAAATTAGGGA+AGG | + | chr2_1:30733874-30733893 | Msa0204820:intron | 20.0% |
| !! | TTTAATTCAAAATTAGGGAA+GGG | + | chr2_1:30733875-30733894 | Msa0204820:intron | 20.0% |
| !!! | TCCTTTTTTTTTTTTCTTTC+AGG | + | chr2_1:30733991-30734010 | Msa0204820:intron | 20.0% |
| !! | TAATAATTGGAAAATTGAGT+AGG | - | chr2_1:30734229-30734248 | None:intergenic | 20.0% |
| !!! | ACTCAATTTTCCAATTATTA+AGG | + | chr2_1:30734229-30734248 | Msa0204820:three_prime_UTR | 20.0% |
| !!! | AAGTTCATTTTAAACAATTG+TGG | + | chr2_1:30734325-30734344 | Msa0204820:three_prime_UTR | 20.0% |
| ! | TGATGATTGAAAGAAGTTTA+AGG | - | chr2_1:30728889-30728908 | None:intergenic | 25.0% |
| ! | ATGGTTGTTAAAGTTGAAAT+TGG | - | chr2_1:30728941-30728960 | None:intergenic | 25.0% |
| ! | AATTTCAACTTTAACAACCA+TGG | + | chr2_1:30728940-30728959 | Msa0204820:exon | 25.0% |
| ! | ATCATGGTAATTGAGATATA+TGG | + | chr2_1:30729106-30729125 | Msa0204820:intron | 25.0% |
| ! | GGTACAAAAGTAAATGAATT+TGG | + | chr2_1:30729452-30729471 | Msa0204820:intron | 25.0% |
| ! | AATGCAAAATTGCTCTATTT+AGG | - | chr2_1:30729623-30729642 | None:intergenic | 25.0% |
| !! | TAAATAGAGCAATTTTGCAT+TGG | + | chr2_1:30729622-30729641 | Msa0204820:intron | 25.0% |
| ! | GAAAACTATTAACCATCATA+TGG | + | chr2_1:30729812-30729831 | Msa0204820:intron | 25.0% |
| ! | GGATAAAGCTTCAATTATTA+AGG | + | chr2_1:30729914-30729933 | Msa0204820:CDS | 25.0% |
| ! | TCTTGATCAAAATCATAGAT+TGG | - | chr2_1:30730035-30730054 | None:intergenic | 25.0% |
| !!! | TTTATATTTGGTTCTAAGCA+TGG | - | chr2_1:30730366-30730385 | None:intergenic | 25.0% |
| ! | ATAAGGTGGTGATTTATATT+TGG | - | chr2_1:30730378-30730397 | None:intergenic | 25.0% |
| ! | TAAATCACCACCTTATAATA+AGG | + | chr2_1:30730382-30730401 | Msa0204820:intron | 25.0% |
| !!! | ATAATGGATAAAGTCTGATT+TGG | - | chr2_1:30730489-30730508 | None:intergenic | 25.0% |
| !!! | TTTAATCTATTTGTTGTTGG+GGG | - | chr2_1:30730534-30730553 | None:intergenic | 25.0% |
| !!! | CTTTAATCTATTTGTTGTTG+GGG | - | chr2_1:30730535-30730554 | None:intergenic | 25.0% |
| ! | AGATTAAAGAAGAGATTGTA+AGG | + | chr2_1:30730546-30730565 | Msa0204820:intron | 25.0% |
| ! | TGAGTGTGTAATTTGATATA+TGG | + | chr2_1:30730668-30730687 | Msa0204820:intron | 25.0% |
| !!! | TCCTATTTAATTTGCTTTGT+AGG | + | chr2_1:30730963-30730982 | Msa0204820:intron | 25.0% |
| ! | ACCTACAAAGCAAATTAAAT+AGG | - | chr2_1:30730967-30730986 | None:intergenic | 25.0% |
| ! | AAATTTAGGGAGATATATCA+AGG | + | chr2_1:30731166-30731185 | Msa0204820:intron | 25.0% |
| !! | TATATCAAGGTGTATTCTTT+TGG | + | chr2_1:30731179-30731198 | Msa0204820:intron | 25.0% |
| ! | ATAGTGTGATACATGAATTA+GGG | + | chr2_1:30731456-30731475 | Msa0204820:intron | 25.0% |
| ! | ACATAGAAAGACCAATAATT+AGG | + | chr2_1:30731502-30731521 | Msa0204820:intron | 25.0% |
| ! | AAAAACAAAATTAAACCACG+CGG | - | chr2_1:30731586-30731605 | None:intergenic | 25.0% |
| !! | TTTTCTTCTTCGTCTAATAA+TGG | + | chr2_1:30731622-30731641 | Msa0204820:intron | 25.0% |
| !! | CATGCTATAATTTGCAAAAT+GGG | + | chr2_1:30731673-30731692 | Msa0204820:intron | 25.0% |
| !! | AAGTTTAAGTGTAGTGTTTT+AGG | + | chr2_1:30731798-30731817 | Msa0204820:intron | 25.0% |
| !! | AGTTTAAGTGTAGTGTTTTA+GGG | + | chr2_1:30731799-30731818 | Msa0204820:intron | 25.0% |
| ! | AGTTTAACGAACATTAATTG+AGG | + | chr2_1:30731848-30731867 | Msa0204820:intron | 25.0% |
| !!! | TTTTTGATTTACCCTCTAAT+AGG | + | chr2_1:30732052-30732071 | Msa0204820:intron | 25.0% |
| ! | TACAGTATAGTATTACCATA+CGG | - | chr2_1:30732630-30732649 | None:intergenic | 25.0% |
| !! | TACTTTCCTTTTCACAAAAT+AGG | + | chr2_1:30732648-30732667 | Msa0204820:intron | 25.0% |
| !!! | CTTTTAGTTCTTCTTTCAAA+AGG | - | chr2_1:30732791-30732810 | None:intergenic | 25.0% |
| ! | AAAATGAAACATATTGACGT+AGG | + | chr2_1:30733275-30733294 | Msa0204820:intron | 25.0% |
| !! | TTTTTATAGGGTACATAATG+AGG | - | chr2_1:30733742-30733761 | None:intergenic | 25.0% |
| ! | TTAATTCAAAATTAGGGAAG+GGG | + | chr2_1:30733876-30733895 | Msa0204820:intron | 25.0% |
| ! | GCCTGAAAGAAAAAAAAAAA+AGG | - | chr2_1:30733995-30734014 | None:intergenic | 25.0% |
| ! | TAGCAAAACTCCTTAATAAT+TGG | - | chr2_1:30734242-30734261 | None:intergenic | 25.0% |
| !! | TTTAAGGTGGTTGGTTTATT+TGG | - | chr2_1:30728873-30728892 | None:intergenic | 30.0% |
| TGATTGAAAGAAGTTTAAGG+TGG | - | chr2_1:30728886-30728905 | None:intergenic | 30.0% | |
| GTTGTTAAAGTTGAAATTGG+AGG | - | chr2_1:30728938-30728957 | None:intergenic | 30.0% | |
| TCACTTTGATTCAAGTATGA+AGG | + | chr2_1:30729051-30729070 | Msa0204820:intron | 30.0% | |
| GTAATTGAGATATATGGTTG+TGG | + | chr2_1:30729112-30729131 | Msa0204820:intron | 30.0% | |
| TGTTTACCTTGCTAATGTTT+GGG | - | chr2_1:30729294-30729313 | None:intergenic | 30.0% | |
| ATGTTTACCTTGCTAATGTT+TGG | - | chr2_1:30729295-30729314 | None:intergenic | 30.0% | |
| ACTAATATTATGTGACACAG+TGG | + | chr2_1:30729535-30729554 | Msa0204820:intron | 30.0% | |
| CTAATATTATGTGACACAGT+GGG | + | chr2_1:30729536-30729555 | Msa0204820:intron | 30.0% | |
| GTGATGTCTTTGATATCTAT+TGG | + | chr2_1:30729790-30729809 | Msa0204820:intron | 30.0% | |
| !!! | GTGACTTTTTCTTTTTCAGA+TGG | + | chr2_1:30729893-30729912 | Msa0204820:intron | 30.0% |
| GATTATTCAAGCAGAGATAA+TGG | + | chr2_1:30729977-30729996 | Msa0204820:CDS | 30.0% | |
| !! | AGATAATGGAACTTGAATCT+GGG | + | chr2_1:30729991-30730010 | Msa0204820:CDS | 30.0% |
| TTTACCTCAAGAACTTCAAT+TGG | - | chr2_1:30730131-30730150 | None:intergenic | 30.0% | |
| TTGAAGTTCTTGAGGTAAAT+TGG | + | chr2_1:30730132-30730151 | Msa0204820:intron | 30.0% | |
| CTTTCTCTCTTTCTCTATTA+GGG | - | chr2_1:30730433-30730452 | None:intergenic | 30.0% | |
| TCTTTCTCTCTTTCTCTATT+AGG | - | chr2_1:30730434-30730453 | None:intergenic | 30.0% | |
| TGGTATTTGATAGGTTGTAA+TGG | - | chr2_1:30730469-30730488 | None:intergenic | 30.0% | |
| !! | AGTCTGATTTGGTATTTGAT+AGG | - | chr2_1:30730478-30730497 | None:intergenic | 30.0% |
| TTTGAGGAAGAAGAAAATGA+AGG | - | chr2_1:30731002-30731021 | None:intergenic | 30.0% | |
| TGTTTGGCTAAAATATCGTT+TGG | - | chr2_1:30731057-30731076 | None:intergenic | 30.0% | |
| TCTATGAAATATGCTTGAGA+AGG | - | chr2_1:30731268-30731287 | None:intergenic | 30.0% | |
| GATAGTGTGATACATGAATT+AGG | + | chr2_1:30731455-30731474 | Msa0204820:intron | 30.0% | |
| GAAACACGTTTCCTAATTAT+TGG | - | chr2_1:30731516-30731535 | None:intergenic | 30.0% | |
| GTCATATGCCGAAATAAATA+AGG | - | chr2_1:30731553-30731572 | None:intergenic | 30.0% | |
| TCTAATAATGGCAAAATGTC+AGG | + | chr2_1:30731634-30731653 | Msa0204820:intron | 30.0% | |
| ! | GCATGCTATAATTTGCAAAA+TGG | + | chr2_1:30731672-30731691 | Msa0204820:intron | 30.0% |
| ! | TTTGAAATCAACCCTAACTT+TGG | - | chr2_1:30731829-30731848 | None:intergenic | 30.0% |
| TAACTTAACTTTCGCTATCA+AGG | - | chr2_1:30731916-30731935 | None:intergenic | 30.0% | |
| TATTTACCTCCCTGTAATAT+AGG | + | chr2_1:30731964-30731983 | Msa0204820:intron | 30.0% | |
| CAGAAATGACCTATATTACA+GGG | - | chr2_1:30731976-30731995 | None:intergenic | 30.0% | |
| !! | TTTTTGTTTGGCCTATTAGA+GGG | - | chr2_1:30732066-30732085 | None:intergenic | 30.0% |
| GGAAATGACCTATATTACAT+GGG | + | chr2_1:30732199-30732218 | Msa0204820:intron | 30.0% | |
| GAAATGACCTATATTACATG+GGG | + | chr2_1:30732200-30732219 | Msa0204820:intron | 30.0% | |
| ! | GTTTTTACCCCATGTAATAT+AGG | - | chr2_1:30732210-30732229 | None:intergenic | 30.0% |
| CAACATACGTTAATGAATGT+TGG | - | chr2_1:30732271-30732290 | None:intergenic | 30.0% | |
| ! | CCATTTCTATGGTTTAGAAT+GGG | - | chr2_1:30732377-30732396 | None:intergenic | 30.0% |
| TCCATTTCTATGGTTTAGAA+TGG | - | chr2_1:30732378-30732397 | None:intergenic | 30.0% | |
| !!! | TTTTGACTTTCTTAACTCTG+TGG | + | chr2_1:30733040-30733059 | Msa0204820:intron | 30.0% |
| TAAATTAGTCCCAAAAGAGA+GGG | + | chr2_1:30733481-30733500 | Msa0204820:intron | 30.0% | |
| ! | TTTACTAAACCCTCTCTTTT+GGG | - | chr2_1:30733493-30733512 | None:intergenic | 30.0% |
| ! | TTTTACTAAACCCTCTCTTT+TGG | - | chr2_1:30733494-30733513 | None:intergenic | 30.0% |
| !! | CTAATGGATTATTTGGTTCA+AGG | + | chr2_1:30733556-30733575 | Msa0204820:intron | 30.0% |
| TAGCTAGAAAACAAAGAAAC+AGG | + | chr2_1:30733714-30733733 | Msa0204820:intron | 30.0% | |
| TAATTCAAAATTAGGGAAGG+GGG | + | chr2_1:30733877-30733896 | Msa0204820:intron | 30.0% | |
| !!! | TTTTTTCTTTCAGGCAAATG+AGG | + | chr2_1:30734000-30734019 | Msa0204820:intron | 30.0% |
| CATTTCATTAGATGCTCATA+GGG | - | chr2_1:30734090-30734109 | None:intergenic | 30.0% | |
| AGCCACTAGTATATAAGTAT+TGG | + | chr2_1:30734133-30734152 | Msa0204820:three_prime_UTR | 30.0% | |
| GCCACTAGTATATAAGTATT+GGG | + | chr2_1:30734134-30734153 | Msa0204820:three_prime_UTR | 30.0% | |
| ACCCAATACTTATATACTAG+TGG | - | chr2_1:30734138-30734157 | None:intergenic | 30.0% | |
| !! | AGTATATAAGTATTGGGTTG+AGG | + | chr2_1:30734140-30734159 | Msa0204820:three_prime_UTR | 30.0% |
| TGATGAACTGCTATGAAAAT+CGG | - | chr2_1:30734178-30734197 | None:intergenic | 30.0% | |
| AATTGAGTAGGAAGAAGAAA+GGG | - | chr2_1:30734217-30734236 | None:intergenic | 30.0% | |
| AAATTGAGTAGGAAGAAGAA+AGG | - | chr2_1:30734218-30734237 | None:intergenic | 30.0% | |
| !! | TTGTGGATCTATATCGATTT+AGG | + | chr2_1:30734342-30734361 | Msa0204820:three_prime_UTR | 30.0% |
| ! | TGAAAGAAGTTTAAGGTGGT+TGG | - | chr2_1:30728882-30728901 | None:intergenic | 35.0% |
| TTAACAACCATGGAGAACAT+TGG | + | chr2_1:30728950-30728969 | Msa0204820:exon | 35.0% | |
| TGATGAGTACAAGCTTTACT+GGG | + | chr2_1:30728973-30728992 | Msa0204820:CDS | 35.0% | |
| TTGTTACCTATCAAGCTCTT+GGG | - | chr2_1:30729020-30729039 | None:intergenic | 35.0% | |
| ATTGTTACCTATCAAGCTCT+TGG | - | chr2_1:30729021-30729040 | None:intergenic | 35.0% | |
| TATCTTAACATGTGCCTTGA+GGG | + | chr2_1:30729713-30729732 | Msa0204820:intron | 35.0% | |
| !!! | AATTTTAACTTGTGCCCTCA+AGG | - | chr2_1:30729730-30729749 | None:intergenic | 35.0% |
| !! | GAGATAATGGAACTTGAATC+TGG | + | chr2_1:30729990-30730009 | Msa0204820:CDS | 35.0% |
| CTTTCCAATTGAAGTTCTTG+AGG | + | chr2_1:30730124-30730143 | Msa0204820:CDS | 35.0% | |
| AAGATGATGATAGAGAGAGT+GGG | - | chr2_1:30730158-30730177 | None:intergenic | 35.0% | |
| AAAGATGATGATAGAGAGAG+TGG | - | chr2_1:30730159-30730178 | None:intergenic | 35.0% | |
| !! | CAATGGTAGGCCTTATTATA+AGG | - | chr2_1:30730395-30730414 | None:intergenic | 35.0% |
| GCATCAAAAATACAAGAGAG+AGG | - | chr2_1:30730577-30730596 | None:intergenic | 35.0% | |
| ATACATGGGAGAGAATACAA+TGG | + | chr2_1:30730712-30730731 | Msa0204820:CDS | 35.0% | |
| TGAGCTTGACATGTAACAAA+AGG | + | chr2_1:30730738-30730757 | Msa0204820:CDS | 35.0% | |
| GAGCTTGACATGTAACAAAA+GGG | + | chr2_1:30730739-30730758 | Msa0204820:CDS | 35.0% | |
| TTTGAAGACAGTCTTCATTG+AGG | + | chr2_1:30730850-30730869 | Msa0204820:CDS | 35.0% | |
| AGGAAGAAGAAAATGAAGGT+TGG | - | chr2_1:30730998-30731017 | None:intergenic | 35.0% | |
| ATGTATCACACTATCACTAG+TGG | - | chr2_1:30731450-30731469 | None:intergenic | 35.0% | |
| GTTACCTTGTATTCATGAGA+GGG | + | chr2_1:30731478-30731497 | Msa0204820:intron | 35.0% | |
| TTACCTTGTATTCATGAGAG+GGG | + | chr2_1:30731479-30731498 | Msa0204820:intron | 35.0% | |
| !! | TGACAAGGATTTTGCCATTT+TGG | - | chr2_1:30731738-30731757 | None:intergenic | 35.0% |
| AAATGACCTATATTACAGGG+AGG | - | chr2_1:30731973-30731992 | None:intergenic | 35.0% | |
| CCAGAAATGACCTATATTAC+AGG | - | chr2_1:30731977-30731996 | None:intergenic | 35.0% | |
| CCTGTAATATAGGTCATTTC+TGG | + | chr2_1:30731974-30731993 | Msa0204820:intron | 35.0% | |
| !! | GTTTTTGTTTGGCCTATTAG+AGG | - | chr2_1:30732116-30732135 | None:intergenic | 35.0% |
| !! | TGGTTTTTGTTTGGCCTATT+AGG | + | chr2_1:30732114-30732133 | Msa0204820:intron | 35.0% |
| !! | GGTTTTTGTTTGGCCTATTA+GGG | + | chr2_1:30732115-30732134 | Msa0204820:intron | 35.0% |
| !! | GTTTTTGTTTGGCCTATTAG+GGG | + | chr2_1:30732116-30732135 | Msa0204820:intron | 35.0% |
| ! | TATTTTACAGGGGGGAAAAT+CGG | + | chr2_1:30732178-30732197 | Msa0204820:intron | 35.0% |
| CGGAAATGACCTATATTACA+TGG | + | chr2_1:30732198-30732217 | Msa0204820:intron | 35.0% | |
| ! | GAGTTGAATCATGGGTTAAT+AGG | - | chr2_1:30732232-30732251 | None:intergenic | 35.0% |
| CCCATTCTAAACCATAGAAA+TGG | + | chr2_1:30732374-30732393 | Msa0204820:intron | 35.0% | |
| TACGGCGGTGAAAAATAAAA+TGG | - | chr2_1:30732612-30732631 | None:intergenic | 35.0% | |
| !!! | TTTTATTTTTCACCGCCGTA+TGG | + | chr2_1:30732612-30732631 | Msa0204820:intron | 35.0% |
| AGTATAGTATTACCATACGG+CGG | - | chr2_1:30732627-30732646 | None:intergenic | 35.0% | |
| CTAAATTAGTCCCAAAAGAG+AGG | + | chr2_1:30733480-30733499 | Msa0204820:intron | 35.0% | |
| ! | TATTTGGTTCAAGGATTCAG+AGG | + | chr2_1:30733565-30733584 | Msa0204820:intron | 35.0% |
| ATTCAGAGGCTAAGTAATTG+TGG | + | chr2_1:30733579-30733598 | Msa0204820:intron | 35.0% | |
| GCATTTCATTAGATGCTCAT+AGG | - | chr2_1:30734091-30734110 | None:intergenic | 35.0% | |
| ATTGAGTAGGAAGAAGAAAG+GGG | - | chr2_1:30734216-30734235 | None:intergenic | 35.0% | |
| GTGATGAGTACAAGCTTTAC+TGG | + | chr2_1:30728972-30728991 | Msa0204820:CDS | 40.0% | |
| !! | GGATTGGATGAAGCTTTTTC+AGG | + | chr2_1:30729145-30729164 | Msa0204820:CDS | 40.0% |
| !! | CTAAGAACATTGACTCTGAG+AGG | + | chr2_1:30729218-30729237 | Msa0204820:CDS | 40.0% |
| TATTATGTGACACAGTGGGT+AGG | + | chr2_1:30729540-30729559 | Msa0204820:intron | 40.0% | |
| !! | TCATGTTAACTTGTGCCCTT+AGG | + | chr2_1:30729582-30729601 | Msa0204820:intron | 40.0% |
| !! | CATGTTAACTTGTGCCCTTA+GGG | + | chr2_1:30729583-30729602 | Msa0204820:intron | 40.0% |
| TTGCTTAACATGTGCCCTAA+GGG | - | chr2_1:30729600-30729619 | None:intergenic | 40.0% | |
| GTATCTTAACATGTGCCTTG+AGG | + | chr2_1:30729712-30729731 | Msa0204820:intron | 40.0% | |
| CTGATCTGTTCTCTTCTTCT+TGG | - | chr2_1:30730078-30730097 | None:intergenic | 40.0% | |
| !! | TGGTAGGCCTTATTATAAGG+TGG | - | chr2_1:30730392-30730411 | None:intergenic | 40.0% |
| ! | TCTTTCTCTATTAGGGTACC+TGG | - | chr2_1:30730426-30730445 | None:intergenic | 40.0% |
| !! | ATCTATTTGTTGTTGGGGGT+TGG | - | chr2_1:30730530-30730549 | None:intergenic | 40.0% |
| TATATGGTTGAGTGCAGCTT+AGG | + | chr2_1:30730684-30730703 | Msa0204820:intron | 40.0% | |
| ATATGGTTGAGTGCAGCTTA+GGG | + | chr2_1:30730685-30730704 | Msa0204820:intron | 40.0% | |
| CAGCTTAGGGTTACATACAT+GGG | + | chr2_1:30730698-30730717 | Msa0204820:intron | 40.0% | |
| TAACAAAAGGGCAGACACAA+TGG | + | chr2_1:30730751-30730770 | Msa0204820:CDS | 40.0% | |
| GGTTACCTTGTATTCATGAG+AGG | + | chr2_1:30731477-30731496 | Msa0204820:intron | 40.0% | |
| CAAAATTAAACCACGCGGTA+AGG | - | chr2_1:30731581-30731600 | None:intergenic | 40.0% | |
| !!! | GGATTTTGCCATTTTGGTGT+GGG | - | chr2_1:30731732-30731751 | None:intergenic | 40.0% |
| !!! | AGGATTTTGCCATTTTGGTG+TGG | - | chr2_1:30731733-30731752 | None:intergenic | 40.0% |
| ATACACACGCAACTATGACA+AGG | - | chr2_1:30731753-30731772 | None:intergenic | 40.0% | |
| !!! | TTTTAGGGCTCACCAAAGTT+AGG | + | chr2_1:30731814-30731833 | Msa0204820:intron | 40.0% |
| ! | TTTAGGGCTCACCAAAGTTA+GGG | + | chr2_1:30731815-30731834 | Msa0204820:intron | 40.0% |
| TGTCTCTAGCTAATGCTAGT+TGG | - | chr2_1:30732734-30732753 | None:intergenic | 40.0% | |
| GAAATGCTAACCAGTGCTTT+CGG | + | chr2_1:30732913-30732932 | Msa0204820:intron | 40.0% | |
| ! | TAATTAGTGTCCGAAAGCAC+TGG | - | chr2_1:30732926-30732945 | None:intergenic | 40.0% |
| GTGCTTTCGGACACTAATTA+AGG | + | chr2_1:30732926-30732945 | Msa0204820:intron | 40.0% | |
| CTTTCTTAACTCTGTGGCAT+TGG | + | chr2_1:30733046-30733065 | Msa0204820:intron | 40.0% | |
| TTGATATGTCGCACAATGAG+TGG | + | chr2_1:30733089-30733108 | Msa0204820:intron | 40.0% | |
| CTATGAAAATCGGAAAGCCA+CGG | - | chr2_1:30734168-30734187 | None:intergenic | 40.0% | |
| TTGAGTAGGAAGAAGAAAGG+GGG | - | chr2_1:30734215-30734234 | None:intergenic | 40.0% | |
| CTCATCACCAATGTTCTCCA+TGG | - | chr2_1:30728960-30728979 | None:intergenic | 45.0% | |
| TTGGGTTTGGAGGAACATGT+TGG | - | chr2_1:30729002-30729021 | None:intergenic | 45.0% | |
| TATCAAGCTCTTGGGTTTGG+AGG | - | chr2_1:30729012-30729031 | None:intergenic | 45.0% | |
| TCCAAACCCAAGAGCTTGAT+AGG | + | chr2_1:30729011-30729030 | Msa0204820:CDS | 45.0% | |
| ACCTATCAAGCTCTTGGGTT+TGG | - | chr2_1:30729015-30729034 | None:intergenic | 45.0% | |
| TATATGGTTGTGGTTGCAGC+TGG | + | chr2_1:30729122-30729141 | Msa0204820:intron | 45.0% | |
| ATATGGTTGTGGTTGCAGCT+GGG | + | chr2_1:30729123-30729142 | Msa0204820:intron | 45.0% | |
| !! | ACATTGACTCTGAGAGGAAG+AGG | + | chr2_1:30729224-30729243 | Msa0204820:CDS | 45.0% |
| ACTCTTTGCACTTAGAGCAG+TGG | + | chr2_1:30729267-30729286 | Msa0204820:CDS | 45.0% | |
| AGTGGTCCCAAACATTAGCA+AGG | + | chr2_1:30729285-30729304 | Msa0204820:CDS | 45.0% | |
| GTTGCTTAACATGTGCCCTA+AGG | - | chr2_1:30729601-30729620 | None:intergenic | 45.0% | |
| ! | AAGAGCTTCCTGTGTTGCTA+AGG | + | chr2_1:30730051-30730070 | Msa0204820:CDS | 45.0% |
| TTCTTGGACCTTAGCAACAC+AGG | - | chr2_1:30730062-30730081 | None:intergenic | 45.0% | |
| ! | TTCTCTATTAGGGTACCTGG+TGG | - | chr2_1:30730423-30730442 | None:intergenic | 45.0% |
| GCAGCTTAGGGTTACATACA+TGG | + | chr2_1:30730697-30730716 | Msa0204820:intron | 45.0% | |
| ! | GCCAACATCACCTCTTTTTC+AGG | + | chr2_1:30730821-30730840 | Msa0204820:CDS | 45.0% |
| GCCTGAAAAAGAGGTGATGT+TGG | - | chr2_1:30730825-30730844 | None:intergenic | 45.0% | |
| !!! | ACATCACCTCTTTTTCAGGC+AGG | + | chr2_1:30730825-30730844 | Msa0204820:CDS | 45.0% |
| CAAAAGCCTGCCTGAAAAAG+AGG | - | chr2_1:30730834-30730853 | None:intergenic | 45.0% | |
| TGTCCCCTCTCATGAATACA+AGG | - | chr2_1:30731485-30731504 | None:intergenic | 45.0% | |
| TCACATCACCCACACCAAAA+TGG | + | chr2_1:30731721-30731740 | Msa0204820:intron | 45.0% | |
| TAAGTAATTGTGGCTGCTGC+AGG | + | chr2_1:30733589-30733608 | Msa0204820:intron | 45.0% | |
| AGATGCTCATAGGGCTTAGA+GGG | - | chr2_1:30734081-30734100 | None:intergenic | 45.0% | |
| TAGATGCTCATAGGGCTTAG+AGG | - | chr2_1:30734082-30734101 | None:intergenic | 45.0% | |
| !! | TAATTAATTATAATTAATCA+TGG | + | chr2_1:30729090-30729109 | Msa0204820:intron | 5.0% |
| !!! | AATATATATTTTTAATAAAG+AGG | - | chr2_1:30730941-30730960 | None:intergenic | 5.0% |
| !! | AAAAAAAAAAAAAAATTACA+GGG | - | chr2_1:30732007-30732026 | None:intergenic | 5.0% |
| !!! | ATTTTTTTTTTTTTTATGAA+TGG | - | chr2_1:30733232-30733251 | None:intergenic | 5.0% |
| !!! | TTTTATTTAACTAAAAAATA+TGG | - | chr2_1:30733636-30733655 | None:intergenic | 5.0% |
| !!! | ATTTTTTTTAATTCAAAATT+AGG | + | chr2_1:30733869-30733888 | Msa0204820:intron | 5.0% |
| !!! | TTTTTTTTAATTCAAAATTA+GGG | + | chr2_1:30733870-30733889 | Msa0204820:intron | 5.0% |
| TATGGTTGTGGTTGCAGCTG+GGG | + | chr2_1:30729124-30729143 | Msa0204820:intron | 50.0% | |
| TATGATTCAAGCTCCCCCGA+TGG | + | chr2_1:30729172-30729191 | Msa0204820:CDS | 50.0% | |
| ! | TCCTGATGATGCTGCACCAT+CGG | - | chr2_1:30729191-30729210 | None:intergenic | 50.0% |
| ! | TTGACTCTGAGAGGAAGAGG+AGG | + | chr2_1:30729227-30729246 | Msa0204820:CDS | 50.0% |
| ! | TATTAGGGTACCTGGTGGTG+TGG | - | chr2_1:30730418-30730437 | None:intergenic | 50.0% |
| TAAACCACGCGGTAAGGTCT+TGG | - | chr2_1:30731575-30731594 | None:intergenic | 50.0% | |
| GATGTGAGAAGGAGTGGCTT+TGG | - | chr2_1:30731708-30731727 | None:intergenic | 50.0% | |
| TTGGTGTGGGTGATGTGAGA+AGG | - | chr2_1:30731719-30731738 | None:intergenic | 50.0% | |
| AGGGTCATTGAGAGCTGCAA+CGG | - | chr2_1:30734062-30734081 | None:intergenic | 50.0% | |
| !! | AGTATTGGGTTGAGGAACCG+TGG | + | chr2_1:30734148-30734167 | Msa0204820:three_prime_UTR | 50.0% |
| TTGTGGTTGCAGCTGGGGAT+TGG | + | chr2_1:30729129-30729148 | Msa0204820:intron | 55.0% | |
| ! | TGATGATGCTGCACCATCGG+GGG | - | chr2_1:30729188-30729207 | None:intergenic | 55.0% |
| ! | CTGATGATGCTGCACCATCG+GGG | - | chr2_1:30729189-30729208 | None:intergenic | 55.0% |
| ! | CCTGATGATGCTGCACCATC+GGG | - | chr2_1:30729190-30729209 | None:intergenic | 55.0% |
| ATGACCAAGACCTTACCGCG+TGG | + | chr2_1:30731568-30731587 | Msa0204820:intron | 55.0% | |
| !! | GAAGGAGTGGCTTTGGTGGA+AGG | - | chr2_1:30731701-30731720 | None:intergenic | 55.0% |
| !! | GTGAGAAGGAGTGGCTTTGG+TGG | - | chr2_1:30731705-30731724 | None:intergenic | 55.0% |
| GTGGGTGATGTGAGAAGGAG+TGG | - | chr2_1:30731714-30731733 | None:intergenic | 55.0% | |
| TGAGAGCTGCAACGGCTGTT+TGG | - | chr2_1:30734054-30734073 | None:intergenic | 55.0% | |
| CCCGATGGTGCAGCATCATC+AGG | + | chr2_1:30729187-30729206 | Msa0204820:CDS | 60.0% | |
| ! | CCTGGTGGTGTGGCAATGGT+AGG | - | chr2_1:30730408-30730427 | None:intergenic | 60.0% |
| CCTACCATTGCCACACCACC+AGG | + | chr2_1:30730405-30730424 | Msa0204820:intron | 60.0% | |
| ! | GGTACCTGGTGGTGTGGCAA+TGG | - | chr2_1:30730412-30730431 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 30728839 | 30734369 | 30728839 | ID=Msa0204820;Name=Msa0204820 |
| chr2_1 | mRNA | 30728839 | 30734369 | 30728839 | ID=Msa0204820-mRNA-1;Parent=Msa0204820;Name=Msa0204820-mRNA-1;_AED=0.10;_eAED=0.10;_QI=120|1|1|1|1|1|5|267|244 |
| chr2_1 | exon | 30728839 | 30729032 | 30728839 | ID=Msa0204820-mRNA-1:exon:10852;Parent=Msa0204820-mRNA-1 |
| chr2_1 | exon | 30729141 | 30729306 | 30729141 | ID=Msa0204820-mRNA-1:exon:10853;Parent=Msa0204820-mRNA-1 |
| chr2_1 | exon | 30729912 | 30730145 | 30729912 | ID=Msa0204820-mRNA-1:exon:10854;Parent=Msa0204820-mRNA-1 |
| chr2_1 | exon | 30730701 | 30730871 | 30730701 | ID=Msa0204820-mRNA-1:exon:10855;Parent=Msa0204820-mRNA-1 |
| chr2_1 | exon | 30734013 | 30734369 | 30734013 | ID=Msa0204820-mRNA-1:exon:10856;Parent=Msa0204820-mRNA-1 |
| chr2_1 | five_prime_UTR | 30728839 | 30728958 | 30728839 | ID=Msa0204820-mRNA-1:five_prime_utr;Parent=Msa0204820-mRNA-1 |
| chr2_1 | CDS | 30728959 | 30729032 | 30728959 | ID=Msa0204820-mRNA-1:cds;Parent=Msa0204820-mRNA-1 |
| chr2_1 | CDS | 30729141 | 30729306 | 30729141 | ID=Msa0204820-mRNA-1:cds;Parent=Msa0204820-mRNA-1 |
| chr2_1 | CDS | 30729912 | 30730145 | 30729912 | ID=Msa0204820-mRNA-1:cds;Parent=Msa0204820-mRNA-1 |
| chr2_1 | CDS | 30730701 | 30730871 | 30730701 | ID=Msa0204820-mRNA-1:cds;Parent=Msa0204820-mRNA-1 |
| chr2_1 | CDS | 30734013 | 30734102 | 30734013 | ID=Msa0204820-mRNA-1:cds;Parent=Msa0204820-mRNA-1 |
| chr2_1 | three_prime_UTR | 30734103 | 30734369 | 30734103 | ID=Msa0204820-mRNA-1:three_prime_utr;Parent=Msa0204820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
