Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0205820 | XP_042969196.1 | 40.399 | 552 | 240 | 10 | 32 | 501 | 7 | 551 | 5.69e-119 | 376 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0205820 | sp|Q9SWG3|FAR1_ARATH | 35.829 | 187 | 108 | 1 | 213 | 387 | 368 | 554 | 2.01e-28 | 124 |
| Msa0205820 | sp|Q9SWG3|FAR1_ARATH | 26.316 | 247 | 144 | 8 | 39 | 272 | 48 | 269 | 3.67e-15 | 82.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0205820 | A0A287QZU0 | 52.802 | 339 | 156 | 3 | 20 | 357 | 34 | 369 | 2.42e-121 | 373 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0205820 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0205820 | Msa1207930 | 0.802059 | 6.715096e-49 | -8.615850e-47 |
| Msa0205820 | Msa1207940 | 0.858973 | 5.701813e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0205820 | MtrunA17_Chr1g0196541 | 43.925 | 428 | 138 | 9 | 232 | 592 | 339 | 731 | 2.53e-94 | 305 |
| Msa0205820 | MtrunA17_Chr1g0196541 | 56.284 | 183 | 80 | 0 | 48 | 230 | 3 | 185 | 5.56e-63 | 221 |
| Msa0205820 | MtrunA17_Chr2g0296781 | 75.000 | 184 | 46 | 0 | 48 | 231 | 3 | 186 | 2.24e-92 | 300 |
| Msa0205820 | MtrunA17_Chr2g0296781 | 78.916 | 166 | 35 | 0 | 229 | 394 | 336 | 501 | 8.65e-87 | 285 |
| Msa0205820 | MtrunA17_Chr2g0296781 | 54.861 | 144 | 52 | 5 | 399 | 530 | 573 | 715 | 1.12e-25 | 112 |
| Msa0205820 | MtrunA17_Chr6g0477261 | 81.928 | 166 | 30 | 0 | 229 | 394 | 225 | 390 | 1.13e-90 | 293 |
| Msa0205820 | MtrunA17_Chr6g0477261 | 89.333 | 75 | 8 | 0 | 157 | 231 | 1 | 75 | 5.37e-37 | 146 |
| Msa0205820 | MtrunA17_Chr6g0477261 | 45.161 | 186 | 79 | 5 | 399 | 562 | 462 | 646 | 1.73e-31 | 129 |
| Msa0205820 | MtrunA17_Chr5g0441581 | 49.123 | 171 | 83 | 1 | 232 | 398 | 367 | 537 | 1.12e-45 | 172 |
| Msa0205820 | MtrunA17_Chr5g0441581 | 31.801 | 261 | 145 | 7 | 18 | 272 | 5 | 238 | 2.70e-27 | 117 |
| Msa0205820 | MtrunA17_Chr6g0476441 | 44.131 | 213 | 76 | 5 | 399 | 569 | 78 | 289 | 4.22e-34 | 131 |
| Msa0205820 | MtrunA17_Chr6g0476431 | 61.628 | 86 | 33 | 0 | 48 | 133 | 3 | 88 | 4.38e-32 | 119 |
| Msa0205820 | MtrunA17_Chr1g0207551 | 41.447 | 152 | 89 | 0 | 234 | 385 | 381 | 532 | 1.76e-29 | 124 |
| Msa0205820 | MtrunA17_Chr1g0207551 | 26.761 | 213 | 138 | 4 | 39 | 241 | 31 | 235 | 1.30e-13 | 74.3 |
| Msa0205820 | MtrunA17_Chr3g0080351 | 37.419 | 155 | 97 | 0 | 233 | 387 | 414 | 568 | 5.80e-29 | 122 |
| Msa0205820 | MtrunA17_Chr5g0448761 | 41.085 | 129 | 76 | 0 | 233 | 361 | 415 | 543 | 2.69e-26 | 114 |
| Msa0205820 | MtrunA17_Chr5g0448761 | 27.941 | 204 | 135 | 7 | 39 | 232 | 57 | 258 | 7.58e-14 | 74.7 |
| Msa0205820 | MtrunA17_Chr2g0291581 | 31.754 | 211 | 135 | 4 | 208 | 412 | 381 | 588 | 3.08e-25 | 110 |
| Msa0205820 | MtrunA17_Chr2g0291581 | 27.315 | 216 | 133 | 6 | 17 | 231 | 58 | 250 | 2.24e-11 | 67.0 |
| Msa0205820 | MtrunA17_Chr2g0329031 | 36.735 | 147 | 89 | 1 | 222 | 364 | 338 | 484 | 5.06e-24 | 107 |
| Msa0205820 | MtrunA17_Chr2g0329031 | 30.570 | 193 | 113 | 5 | 48 | 232 | 20 | 199 | 6.66e-18 | 87.8 |
| Msa0205820 | MtrunA17_Chr1g0202341 | 36.806 | 144 | 89 | 1 | 215 | 358 | 383 | 524 | 4.72e-23 | 103 |
| Msa0205820 | MtrunA17_Chr6g0451441 | 31.120 | 241 | 152 | 7 | 10 | 241 | 52 | 287 | 6.03e-23 | 102 |
| Msa0205820 | MtrunA17_Chr5g0440451 | 35.795 | 176 | 103 | 6 | 238 | 411 | 401 | 568 | 1.85e-19 | 92.8 |
| Msa0205820 | MtrunA17_Chr3g0118611 | 33.333 | 180 | 112 | 6 | 233 | 411 | 293 | 465 | 8.29e-19 | 90.5 |
| Msa0205820 | MtrunA17_Chr5g0448511 | 33.333 | 129 | 86 | 0 | 233 | 361 | 187 | 315 | 9.33e-19 | 90.1 |
| Msa0205820 | MtrunA17_Chr2g0291591 | 35.115 | 131 | 85 | 0 | 233 | 363 | 407 | 537 | 2.66e-18 | 88.6 |
| Msa0205820 | MtrunA17_Chr2g0291591 | 27.027 | 259 | 168 | 6 | 18 | 270 | 39 | 282 | 4.45e-16 | 81.6 |
| Msa0205820 | MtrunA17_Chr7g0258861 | 26.047 | 215 | 148 | 4 | 39 | 245 | 7 | 218 | 1.07e-15 | 78.2 |
| Msa0205820 | MtrunA17_Chr8g0363841 | 27.778 | 216 | 148 | 4 | 38 | 245 | 10 | 225 | 1.87e-13 | 73.6 |
| Msa0205820 | MtrunA17_Chr3g0077731 | 47.222 | 108 | 44 | 4 | 435 | 530 | 1 | 107 | 3.42e-13 | 66.6 |
| Msa0205820 | MtrunA17_Chr2g0308841 | 34.066 | 91 | 60 | 0 | 234 | 324 | 17 | 107 | 4.49e-13 | 69.7 |
| Msa0205820 | MtrunA17_Chr1g0203051 | 31.967 | 122 | 82 | 1 | 234 | 354 | 424 | 545 | 4.84e-13 | 72.0 |
| Msa0205820 | MtrunA17_Chr2g0324011 | 25.822 | 213 | 150 | 5 | 39 | 245 | 7 | 217 | 9.08e-13 | 71.2 |
| Msa0205820 | MtrunA17_Chr2g0287061 | 33.533 | 167 | 95 | 4 | 233 | 393 | 493 | 649 | 2.01e-12 | 70.5 |
| Msa0205820 | MtrunA17_Chr2g0276841 | 28.125 | 160 | 95 | 3 | 233 | 377 | 424 | 578 | 8.46e-12 | 68.2 |
| Msa0205820 | MtrunA17_Chr2g0287651 | 23.605 | 233 | 164 | 4 | 227 | 448 | 415 | 644 | 1.25e-11 | 67.8 |
| Msa0205820 | MtrunA17_Chr1g0198761 | 30.872 | 149 | 95 | 3 | 233 | 379 | 406 | 548 | 2.54e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0205820 | AT4G15090.1 | 35.829 | 187 | 108 | 1 | 213 | 387 | 368 | 554 | 2.05e-29 | 124 |
| Msa0205820 | AT4G15090.1 | 26.316 | 247 | 144 | 8 | 39 | 272 | 48 | 269 | 3.73e-16 | 82.8 |
| Msa0205820 | AT4G15090.5 | 35.829 | 187 | 108 | 1 | 213 | 387 | 368 | 554 | 2.05e-29 | 124 |
| Msa0205820 | AT4G15090.5 | 26.316 | 247 | 144 | 8 | 39 | 272 | 48 | 269 | 3.73e-16 | 82.8 |
| Msa0205820 | AT4G15090.3 | 35.829 | 187 | 108 | 1 | 213 | 387 | 368 | 554 | 2.05e-29 | 124 |
| Msa0205820 | AT4G15090.3 | 26.316 | 247 | 144 | 8 | 39 | 272 | 48 | 269 | 3.73e-16 | 82.8 |
| Msa0205820 | AT4G15090.2 | 35.829 | 187 | 108 | 1 | 213 | 387 | 368 | 554 | 2.05e-29 | 124 |
| Msa0205820 | AT4G15090.2 | 26.316 | 247 | 144 | 8 | 39 | 272 | 48 | 269 | 3.73e-16 | 82.8 |
| Msa0205820 | AT4G15090.4 | 35.829 | 187 | 108 | 1 | 213 | 387 | 368 | 554 | 2.05e-29 | 124 |
| Msa0205820 | AT4G15090.4 | 26.316 | 247 | 144 | 8 | 39 | 272 | 48 | 269 | 3.73e-16 | 82.8 |
| Msa0205820 | AT3G22170.2 | 38.710 | 155 | 95 | 0 | 233 | 387 | 409 | 563 | 8.46e-29 | 122 |
| Msa0205820 | AT3G22170.1 | 38.710 | 155 | 95 | 0 | 233 | 387 | 409 | 563 | 8.46e-29 | 122 |
| Msa0205820 | AT4G38180.1 | 41.085 | 129 | 76 | 0 | 233 | 361 | 424 | 552 | 3.21e-27 | 117 |
| Msa0205820 | AT4G38180.1 | 26.728 | 217 | 148 | 6 | 25 | 232 | 56 | 270 | 1.43e-13 | 74.3 |
| Msa0205820 | AT1G76320.1 | 38.710 | 155 | 89 | 2 | 233 | 387 | 337 | 485 | 1.39e-25 | 112 |
| Msa0205820 | AT1G76320.1 | 32.836 | 201 | 108 | 7 | 48 | 236 | 3 | 188 | 6.47e-21 | 97.8 |
| Msa0205820 | AT1G76320.4 | 38.710 | 155 | 89 | 2 | 233 | 387 | 337 | 485 | 1.39e-25 | 112 |
| Msa0205820 | AT1G76320.4 | 32.836 | 201 | 108 | 7 | 48 | 236 | 3 | 188 | 6.47e-21 | 97.8 |
| Msa0205820 | AT1G76320.2 | 38.710 | 155 | 89 | 2 | 233 | 387 | 337 | 485 | 1.40e-25 | 112 |
| Msa0205820 | AT1G76320.2 | 32.836 | 201 | 108 | 7 | 48 | 236 | 3 | 188 | 6.74e-21 | 97.8 |
| Msa0205820 | AT1G76320.3 | 38.710 | 155 | 89 | 2 | 233 | 387 | 337 | 485 | 1.64e-25 | 112 |
| Msa0205820 | AT1G76320.3 | 32.836 | 201 | 108 | 7 | 48 | 236 | 3 | 188 | 8.00e-21 | 97.4 |
| Msa0205820 | AT2G32250.8 | 36.774 | 155 | 96 | 1 | 234 | 386 | 304 | 458 | 2.16e-23 | 105 |
| Msa0205820 | AT2G32250.2 | 36.774 | 155 | 96 | 1 | 234 | 386 | 345 | 499 | 2.17e-23 | 105 |
| Msa0205820 | AT2G32250.4 | 36.774 | 155 | 96 | 1 | 234 | 386 | 345 | 499 | 2.17e-23 | 105 |
| Msa0205820 | AT2G32250.5 | 36.774 | 155 | 96 | 1 | 234 | 386 | 345 | 499 | 2.33e-23 | 105 |
| Msa0205820 | AT2G32250.6 | 36.774 | 155 | 96 | 1 | 234 | 386 | 345 | 499 | 2.35e-23 | 105 |
| Msa0205820 | AT2G32250.1 | 36.774 | 155 | 96 | 1 | 234 | 386 | 345 | 499 | 2.35e-23 | 105 |
| Msa0205820 | AT2G32250.3 | 36.774 | 155 | 96 | 1 | 234 | 386 | 345 | 499 | 2.35e-23 | 105 |
| Msa0205820 | AT2G32250.7 | 36.774 | 155 | 96 | 1 | 234 | 386 | 304 | 458 | 2.52e-23 | 105 |
| Msa0205820 | AT1G52520.1 | 33.121 | 157 | 102 | 2 | 208 | 363 | 397 | 551 | 9.01e-23 | 103 |
| Msa0205820 | AT4G19990.1 | 37.879 | 132 | 82 | 0 | 233 | 364 | 291 | 422 | 8.83e-21 | 97.1 |
| Msa0205820 | AT4G19990.3 | 37.879 | 132 | 82 | 0 | 233 | 364 | 348 | 479 | 9.71e-21 | 97.1 |
| Msa0205820 | AT4G19990.4 | 37.879 | 132 | 82 | 0 | 233 | 364 | 348 | 479 | 9.71e-21 | 97.1 |
| Msa0205820 | AT4G19990.6 | 37.879 | 132 | 82 | 0 | 233 | 364 | 348 | 479 | 9.98e-21 | 97.1 |
| Msa0205820 | AT4G19990.2 | 37.879 | 132 | 82 | 0 | 233 | 364 | 348 | 479 | 9.98e-21 | 97.1 |
| Msa0205820 | AT4G19990.5 | 37.879 | 132 | 82 | 0 | 233 | 364 | 348 | 479 | 1.02e-20 | 97.1 |
| Msa0205820 | AT4G19990.7 | 37.879 | 132 | 82 | 0 | 233 | 364 | 362 | 493 | 1.09e-20 | 97.1 |
| Msa0205820 | AT4G38170.1 | 29.730 | 148 | 104 | 0 | 232 | 379 | 188 | 335 | 1.15e-19 | 93.2 |
| Msa0205820 | AT1G80010.1 | 30.769 | 182 | 122 | 3 | 233 | 411 | 445 | 625 | 3.95e-19 | 92.0 |
| Msa0205820 | AT2G27110.3 | 34.899 | 149 | 91 | 4 | 233 | 379 | 226 | 370 | 1.35e-17 | 87.0 |
| Msa0205820 | AT2G27110.2 | 34.899 | 149 | 91 | 4 | 233 | 379 | 371 | 515 | 1.51e-17 | 87.0 |
| Msa0205820 | AT2G27110.1 | 34.899 | 149 | 91 | 4 | 233 | 379 | 371 | 515 | 1.51e-17 | 87.0 |
| Msa0205820 | AT3G06250.2 | 30.952 | 126 | 84 | 1 | 233 | 358 | 497 | 619 | 2.15e-13 | 73.9 |
| Msa0205820 | AT3G06250.1 | 30.952 | 126 | 84 | 1 | 233 | 358 | 497 | 619 | 2.15e-13 | 73.9 |
| Msa0205820 | AT3G06250.3 | 30.952 | 126 | 84 | 1 | 233 | 358 | 497 | 619 | 2.15e-13 | 73.9 |
| Msa0205820 | AT5G18960.2 | 30.216 | 139 | 93 | 2 | 233 | 371 | 521 | 655 | 5.37e-13 | 72.8 |
| Msa0205820 | AT5G18960.1 | 30.216 | 139 | 93 | 2 | 233 | 371 | 521 | 655 | 5.37e-13 | 72.8 |
| Msa0205820 | AT1G10240.2 | 27.950 | 161 | 98 | 4 | 233 | 379 | 402 | 558 | 2.06e-11 | 67.4 |
| Msa0205820 | AT1G10240.1 | 27.950 | 161 | 98 | 4 | 233 | 379 | 402 | 558 | 2.06e-11 | 67.4 |
Find 73 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCATTGGTGAATGCTTTC+TGG | 0.174694 | 2_1:+33082662 | None:intergenic |
| TCACTCATAAGTATTGAATT+TGG | 0.202186 | 2_1:+33081657 | None:intergenic |
| AAGGAAAACAAGGCTGATTT+TGG | 0.221363 | 2_1:-33082739 | Msa0205820:CDS |
| ATAGCTTGTATCAGTCATTT+TGG | 0.235652 | 2_1:-33082700 | Msa0205820:CDS |
| CAAGAGTTATGCCCAATCTA+TGG | 0.242427 | 2_1:-33083967 | Msa0205820:CDS |
| AATGCATGTATTTCTTTAGA+TGG | 0.249459 | 2_1:-33083792 | Msa0205820:CDS |
| CTAAAATAGCGTGCTTTGTC+AGG | 0.272247 | 2_1:+33083720 | None:intergenic |
| CCTTTACTTCGAGTCGGTAT+AGG | 0.276780 | 2_1:+33082093 | None:intergenic |
| TTTGAGTAAGAGTGATTTCA+TGG | 0.279123 | 2_1:-33083001 | Msa0205820:intron |
| TATGCCCAATCTATGGGTTT+TGG | 0.292447 | 2_1:-33083960 | Msa0205820:CDS |
| CATATGTGAGAGACACGTTT+TGG | 0.314193 | 2_1:-33082888 | Msa0205820:CDS |
| CTTTACTTCGAGTCGGTATA+GGG | 0.334776 | 2_1:+33082094 | None:intergenic |
| ATTTGTTTAAAATGAGGAAT+TGG | 0.340063 | 2_1:-33082212 | Msa0205820:CDS |
| TCATACTTGCTTTGAGAGAT+TGG | 0.350261 | 2_1:-33082596 | Msa0205820:CDS |
| GACAGGGGATGCTTCTTTAG+AGG | 0.364055 | 2_1:+33082164 | None:intergenic |
| TACCTGTAACAATTCAAAAT+AGG | 0.377069 | 2_1:+33081505 | None:intergenic |
| TTCATGACTTGAGAATAAAA+TGG | 0.385023 | 2_1:+33081539 | None:intergenic |
| AATTAAAGATATAGTGTTTG+AGG | 0.408957 | 2_1:-33082521 | Msa0205820:intron |
| TAACTCCAAAACCCATAGAT+TGG | 0.409903 | 2_1:+33083955 | None:intergenic |
| AAGTGAGGAGACTACGACTT+GGG | 0.414907 | 2_1:-33083539 | Msa0205820:CDS |
| ACTTATGAGTGAAGTAAATC+AGG | 0.421958 | 2_1:-33081646 | Msa0205820:intron |
| TATTCTCAAGTCATGAATCA+TGG | 0.442758 | 2_1:-33081533 | Msa0205820:CDS |
| AAGTATTGAATTTGGATTGA+AGG | 0.452798 | 2_1:+33081665 | None:intergenic |
| ATTTGATGAAAGAAATCGTT+GGG | 0.454237 | 2_1:-33082917 | Msa0205820:CDS |
| AACTCCAAAACCCATAGATT+GGG | 0.455626 | 2_1:+33083956 | None:intergenic |
| GAATATGACATTTGGTGAAA+AGG | 0.456326 | 2_1:-33083583 | Msa0205820:CDS |
| GTTCAAGTAGTTGATGTAGT+TGG | 0.457215 | 2_1:-33081863 | Msa0205820:CDS |
| ATGATGATTTGTTTAAAATG+AGG | 0.460118 | 2_1:-33082218 | Msa0205820:CDS |
| TAAAATGAGGAATTGGATCA+AGG | 0.463705 | 2_1:-33082205 | Msa0205820:CDS |
| GGCTATGAGAATATGACATT+TGG | 0.466582 | 2_1:-33083591 | Msa0205820:CDS |
| ATTGAGAGATAAAGTTGAAA+AGG | 0.468812 | 2_1:-33082758 | Msa0205820:CDS |
| AGAGTGATTTCATGGAAAAG+TGG | 0.471372 | 2_1:-33082993 | Msa0205820:CDS |
| AAGGTCGTCCTCCTTCAAAA+AGG | 0.483624 | 2_1:-33082074 | Msa0205820:CDS |
| AGTATTGAATTTGGATTGAA+GGG | 0.484124 | 2_1:+33081666 | None:intergenic |
| TGTCATTGTGGAAGAAGGTT+CGG | 0.494454 | 2_1:-33082145 | Msa0205820:CDS |
| TGGATCAAAGTATGTGAGTA+AGG | 0.495275 | 2_1:-33083871 | Msa0205820:CDS |
| TCATGATAATGAATGGTTGA+AGG | 0.498087 | 2_1:-33082944 | Msa0205820:CDS |
| CATGATAATGAATGGTTGAA+GGG | 0.498314 | 2_1:-33082943 | Msa0205820:CDS |
| TTGAACTTCATGATAATGAA+TGG | 0.502013 | 2_1:-33082951 | Msa0205820:CDS |
| AAGAGTTATGCCCAATCTAT+GGG | 0.502102 | 2_1:-33083966 | Msa0205820:CDS |
| GAACCTTCTTCCACAATGAC+AGG | 0.503057 | 2_1:+33082147 | None:intergenic |
| GAGTGATTTCATGGAAAAGT+GGG | 0.506412 | 2_1:-33082992 | Msa0205820:CDS |
| AGGAGACTACGACTTGGGGC+TGG | 0.514634 | 2_1:-33083534 | Msa0205820:CDS |
| TCCCCTGTCATTGTGGAAGA+AGG | 0.515186 | 2_1:-33082150 | Msa0205820:CDS |
| ACTTGCTTTGAGAGATTGGA+AGG | 0.519549 | 2_1:-33082592 | Msa0205820:CDS |
| TGGATCCTCGTTTGAAAAGG+AGG | 0.528466 | 2_1:-33083683 | Msa0205820:CDS |
| ATTTGTATCTTCTGATGAAG+AGG | 0.529351 | 2_1:-33084108 | Msa0205820:CDS |
| AACGTGTCTCTCACATATGC+AGG | 0.530851 | 2_1:+33082892 | None:intergenic |
| TCAATGGTTGTTGAAGCAAA+TGG | 0.534602 | 2_1:-33083612 | Msa0205820:CDS |
| CCTATACCGACTCGAAGTAA+AGG | 0.536102 | 2_1:-33082093 | Msa0205820:CDS |
| ATTCAAAGAATTTCAAGTGG+AGG | 0.539575 | 2_1:-33082638 | Msa0205820:CDS |
| TTAGAACTTAATGATCAAGC+TGG | 0.546528 | 2_1:-33083660 | Msa0205820:CDS |
| TAAAATAGCGTGCTTTGTCA+GGG | 0.562727 | 2_1:+33083721 | None:intergenic |
| GAAACTATATAGATAAAGTG+AGG | 0.579861 | 2_1:-33083554 | Msa0205820:CDS |
| AGAAGCATCCCCTGTCATTG+TGG | 0.581674 | 2_1:-33082157 | Msa0205820:CDS |
| ATTCAATCTAGCCTTGCACT+TGG | 0.584905 | 2_1:+33083812 | None:intergenic |
| CGTGTTATTGATGACGACAA+CGG | 0.597290 | 2_1:+33081375 | None:intergenic |
| GATGAAGAGGATATCAGAGA+AGG | 0.605305 | 2_1:-33084095 | Msa0205820:CDS |
| TATTTGATGAAAGAAATCGT+TGG | 0.605577 | 2_1:-33082918 | Msa0205820:CDS |
| ATGATAATGAATGGTTGAAG+GGG | 0.618077 | 2_1:-33082942 | Msa0205820:CDS |
| AACCTTCTTCCACAATGACA+GGG | 0.618602 | 2_1:+33082148 | None:intergenic |
| TAAAGTTGAAAAGGAAAACA+AGG | 0.627416 | 2_1:-33082749 | Msa0205820:CDS |
| CTTGTACTTTAGACGCACAC+AGG | 0.627505 | 2_1:+33081891 | None:intergenic |
| AGTGAGGAGACTACGACTTG+GGG | 0.641932 | 2_1:-33083538 | Msa0205820:CDS |
| AAAATTCAAAGAATTTCAAG+TGG | 0.644675 | 2_1:-33082641 | Msa0205820:CDS |
| CTAAATATAGTTCCAACCTG+AGG | 0.648571 | 2_1:+33084017 | None:intergenic |
| AAAGTGAGGAGACTACGACT+TGG | 0.649574 | 2_1:-33083540 | Msa0205820:CDS |
| TTTGGGAGGAATGGACATGG+TGG | 0.651520 | 2_1:-33081705 | Msa0205820:CDS |
| TTTACTCTAGCATGTAGTCG+TGG | 0.653028 | 2_1:-33083891 | Msa0205820:CDS |
| ACAGAGTGGAAATCAACAAG+AGG | 0.665527 | 2_1:-33081986 | Msa0205820:intron |
| ACCTTCTTCCACAATGACAG+GGG | 0.672393 | 2_1:+33082149 | None:intergenic |
| GGACGACCTTTACTTCGAGT+CGG | 0.678639 | 2_1:+33082087 | None:intergenic |
| ACGACAACGGATCATTCACA+TGG | 0.697567 | 2_1:+33081388 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATTCATATATGTTTTT+AGG | - | chr2_1:33083979-33083998 | Msa0205820:CDS | 10.0% |
| !!! | TTAATTCATATATGTTTTTA+GGG | - | chr2_1:33083980-33083999 | Msa0205820:CDS | 10.0% |
| !! | TAAGCATTAAATACAAATTT+AGG | + | chr2_1:33081505-33081524 | None:intergenic | 15.0% |
| !!! | TTTTTAATTTATTGCATTAG+TGG | - | chr2_1:33081583-33081602 | Msa0205820:intron | 15.0% |
| !!! | GTCTAATTTTCAATATTTAA+TGG | - | chr2_1:33083802-33083821 | Msa0205820:CDS | 15.0% |
| !!! | TAATTCATATATGTTTTTAG+GGG | - | chr2_1:33083981-33084000 | Msa0205820:CDS | 15.0% |
| !! | TAAGTTAACTACCTTAAATT+GGG | - | chr2_1:33081385-33081404 | Msa0205820:CDS | 20.0% |
| !!! | TTTTGATATTGAAACTGATT+TGG | - | chr2_1:33081474-33081493 | Msa0205820:intron | 20.0% |
| !!! | TTTTAGAAGTAGTAAGTTTT+TGG | - | chr2_1:33082018-33082037 | Msa0205820:CDS | 20.0% |
| !!! | AAATTCTTTGAATTTTGCAT+TGG | + | chr2_1:33083076-33083095 | None:intergenic | 20.0% |
| !! | AAAATTCAAAGAATTTCAAG+TGG | - | chr2_1:33083080-33083099 | Msa0205820:intron | 20.0% |
| !! | AATTAAAGATATAGTGTTTG+AGG | - | chr2_1:33083200-33083219 | Msa0205820:intron | 20.0% |
| !!! | AATTCAAAGGTATTTTATGT+AGG | - | chr2_1:33083274-33083293 | Msa0205820:intron | 20.0% |
| !! | ATCAAAACCACATTTAATAA+GGG | + | chr2_1:33083397-33083416 | None:intergenic | 20.0% |
| !!! | CATTTTAAACAAATCATCAT+CGG | + | chr2_1:33083503-33083522 | None:intergenic | 20.0% |
| !!! | ATGATGATTTGTTTAAAATG+AGG | - | chr2_1:33083503-33083522 | Msa0205820:CDS | 20.0% |
| !!! | ATTTGTTTAAAATGAGGAAT+TGG | - | chr2_1:33083509-33083528 | Msa0205820:CDS | 20.0% |
| !!! | AATTTTCAATATTTAATGGC+AGG | - | chr2_1:33083806-33083825 | Msa0205820:CDS | 20.0% |
| !!! | ATTTTCAATATTTAATGGCA+GGG | - | chr2_1:33083807-33083826 | Msa0205820:CDS | 20.0% |
| !!! | AATTCATATATGTTTTTAGG+GGG | - | chr2_1:33083982-33084001 | Msa0205820:CDS | 20.0% |
| !!! | AAGTATTTTCCATGTTATTT+AGG | - | chr2_1:33084157-33084176 | Msa0205820:intron | 20.0% |
| ! | GTAAGTTAACTACCTTAAAT+TGG | - | chr2_1:33081384-33081403 | Msa0205820:CDS | 25.0% |
| ! | AGTAACAAAAATACAGATGA+TGG | - | chr2_1:33081797-33081816 | Msa0205820:intron | 25.0% |
| ! | GTAACAAAAATACAGATGAT+GGG | - | chr2_1:33081798-33081817 | Msa0205820:intron | 25.0% |
| !! | TGGTTTTTGTTAAAGGATTT+GGG | + | chr2_1:33081892-33081911 | None:intergenic | 25.0% |
| !!! | TTGGTTTTTGTTAAAGGATT+TGG | + | chr2_1:33081893-33081912 | None:intergenic | 25.0% |
| ! | AATGCATGTATTTCTTTAGA+TGG | - | chr2_1:33081929-33081948 | Msa0205820:intron | 25.0% |
| ! | GAAACTATATAGATAAAGTG+AGG | - | chr2_1:33082167-33082186 | Msa0205820:CDS | 25.0% |
| ! | TTTGTGGCATATAATGAAAA+AGG | - | chr2_1:33082624-33082643 | Msa0205820:CDS | 25.0% |
| !! | TGTTTTCATAGACTCATAAT+CGG | + | chr2_1:33082674-33082693 | None:intergenic | 25.0% |
| !! | TTGAACTTCATGATAATGAA+TGG | - | chr2_1:33082770-33082789 | Msa0205820:CDS | 25.0% |
| ! | TATTTGATGAAAGAAATCGT+TGG | - | chr2_1:33082803-33082822 | Msa0205820:CDS | 25.0% |
| ! | ATTTGATGAAAGAAATCGTT+GGG | - | chr2_1:33082804-33082823 | Msa0205820:CDS | 25.0% |
| ! | ATTGAGAGATAAAGTTGAAA+AGG | - | chr2_1:33082963-33082982 | Msa0205820:CDS | 25.0% |
| ! | TAAAGTTGAAAAGGAAAACA+AGG | - | chr2_1:33082972-33082991 | Msa0205820:CDS | 25.0% |
| !! | TGTTGTTTGTTTCAATTCAA+AGG | - | chr2_1:33083261-33083280 | Msa0205820:intron | 25.0% |
| ! | GATCAAAACCACATTTAATA+AGG | + | chr2_1:33083398-33083417 | None:intergenic | 25.0% |
| !! | AGTATTGAATTTGGATTGAA+GGG | + | chr2_1:33084058-33084077 | None:intergenic | 25.0% |
| !!! | AAGTATTGAATTTGGATTGA+AGG | + | chr2_1:33084059-33084078 | None:intergenic | 25.0% |
| !!! | TCACTCATAAGTATTGAATT+TGG | + | chr2_1:33084067-33084086 | None:intergenic | 25.0% |
| ! | TTCCTGTAACATTAATATTG+TGG | - | chr2_1:33084127-33084146 | Msa0205820:intron | 25.0% |
| ! | ATCCACAATATTAATGTTAC+AGG | + | chr2_1:33084132-33084151 | None:intergenic | 25.0% |
| ! | AAAATGGAACCTAAATAACA+TGG | + | chr2_1:33084169-33084188 | None:intergenic | 25.0% |
| ! | TTCATGACTTGAGAATAAAA+TGG | + | chr2_1:33084185-33084204 | None:intergenic | 25.0% |
| !!! | TTCCTATTTTGAATTGTTAC+AGG | - | chr2_1:33084214-33084233 | Msa0205820:intron | 25.0% |
| ! | TACCTGTAACAATTCAAAAT+AGG | + | chr2_1:33084219-33084238 | None:intergenic | 25.0% |
| !! | ATAGTTTGATCAGTTGATGA+GGG | + | chr2_1:33081422-33081441 | None:intergenic | 30.0% |
| ATTTGTATCTTCTGATGAAG+AGG | - | chr2_1:33081613-33081632 | Msa0205820:intron | 30.0% | |
| !! | TTGCACTTGGTTTTTGTTAA+AGG | + | chr2_1:33081899-33081918 | None:intergenic | 30.0% |
| TTTAACAAAAACCAAGTGCA+AGG | - | chr2_1:33081898-33081917 | Msa0205820:intron | 30.0% | |
| TTAGAACTTAATGATCAAGC+TGG | - | chr2_1:33082061-33082080 | Msa0205820:CDS | 30.0% | |
| ! | AAGCAGAAATTTTCGATCAA+TGG | - | chr2_1:33082093-33082112 | Msa0205820:CDS | 30.0% |
| ! | GAATATGACATTTGGTGAAA+AGG | - | chr2_1:33082138-33082157 | Msa0205820:CDS | 30.0% |
| !!! | TCGCTTACGAAATGTTTTTT+GGG | - | chr2_1:33082297-33082316 | Msa0205820:CDS | 30.0% |
| ! | TGTTTGGAATAACCAAGTAA+AGG | + | chr2_1:33082494-33082513 | None:intergenic | 30.0% |
| TTACTTGGTTATTCCAAACA+TGG | - | chr2_1:33082494-33082513 | Msa0205820:intron | 30.0% | |
| TGATCAGTAATTATGGCATT+CGG | + | chr2_1:33082544-33082563 | None:intergenic | 30.0% | |
| TCTGTCTTGATCAGTAATTA+TGG | + | chr2_1:33082551-33082570 | None:intergenic | 30.0% | |
| TTTGAGTAAGAGTGATTTCA+TGG | - | chr2_1:33082720-33082739 | Msa0205820:CDS | 30.0% | |
| ! | TCATGATAATGAATGGTTGA+AGG | - | chr2_1:33082777-33082796 | Msa0205820:CDS | 30.0% |
| ! | CATGATAATGAATGGTTGAA+GGG | - | chr2_1:33082778-33082797 | Msa0205820:CDS | 30.0% |
| ! | ATGATAATGAATGGTTGAAG+GGG | - | chr2_1:33082779-33082798 | Msa0205820:CDS | 30.0% |
| !!! | AGTATGAACTCGTTTTTTGA+TGG | - | chr2_1:33082886-33082905 | Msa0205820:CDS | 30.0% |
| !! | ATAGCTTGTATCAGTCATTT+TGG | - | chr2_1:33083021-33083040 | Msa0205820:intron | 30.0% |
| ! | ATTCAAAGAATTTCAAGTGG+AGG | - | chr2_1:33083083-33083102 | Msa0205820:intron | 30.0% |
| CTGTTAACTTAAGAACACAA+AGG | + | chr2_1:33083305-33083324 | None:intergenic | 30.0% | |
| CTTTGTGTTCTTAAGTTAAC+AGG | - | chr2_1:33083303-33083322 | Msa0205820:intron | 30.0% | |
| TGAGAGAAAATATAAGAGGA+TGG | + | chr2_1:33083345-33083364 | None:intergenic | 30.0% | |
| AGACATACCCTTATTAAATG+TGG | - | chr2_1:33083387-33083406 | Msa0205820:intron | 30.0% | |
| !!! | TGTGGTTTTGATCATTTAGT+TGG | - | chr2_1:33083405-33083424 | Msa0205820:intron | 30.0% |
| TAAAATGAGGAATTGGATCA+AGG | - | chr2_1:33083516-33083535 | Msa0205820:CDS | 30.0% | |
| ! | TTAGAAGACTTCCTTTTTGA+AGG | + | chr2_1:33083661-33083680 | None:intergenic | 30.0% |
| !!! | ACTCTGTTGACTTCTTTTTT+GGG | + | chr2_1:33083722-33083741 | None:intergenic | 30.0% |
| ACTTATGAGTGAAGTAAATC+AGG | - | chr2_1:33084075-33084094 | Msa0205820:CDS | 30.0% | |
| TATTCTCAAGTCATGAATCA+TGG | - | chr2_1:33084188-33084207 | Msa0205820:intron | 30.0% | |
| !! | TGTCAGTTTGTTCTTTTTGT+AGG | - | chr2_1:33084303-33084322 | Msa0205820:intron | 30.0% |
| ATGGGTGATAACCCAATTTA+AGG | + | chr2_1:33081399-33081418 | None:intergenic | 35.0% | |
| ! | GATAGTTTGATCAGTTGATG+AGG | + | chr2_1:33081423-33081442 | None:intergenic | 35.0% |
| TCATGAAGATGAAAAACCTC+AGG | - | chr2_1:33081688-33081707 | Msa0205820:CDS | 35.0% | |
| CTAAATATAGTTCCAACCTG+AGG | + | chr2_1:33081707-33081726 | None:intergenic | 35.0% | |
| AAGAGTTATGCCCAATCTAT+GGG | - | chr2_1:33081755-33081774 | Msa0205820:intron | 35.0% | |
| AACTCCAAAACCCATAGATT+GGG | + | chr2_1:33081768-33081787 | None:intergenic | 35.0% | |
| TAACTCCAAAACCCATAGAT+TGG | + | chr2_1:33081769-33081788 | None:intergenic | 35.0% | |
| TGGATCAAAGTATGTGAGTA+AGG | - | chr2_1:33081850-33081869 | Msa0205820:CDS | 35.0% | |
| TAAAATAGCGTGCTTTGTCA+GGG | + | chr2_1:33082003-33082022 | None:intergenic | 35.0% | |
| ! | TTTTGGATCCTCGTTTGAAA+AGG | - | chr2_1:33082035-33082054 | Msa0205820:CDS | 35.0% |
| TCAATGGTTGTTGAAGCAAA+TGG | - | chr2_1:33082109-33082128 | Msa0205820:CDS | 35.0% | |
| GGCTATGAGAATATGACATT+TGG | - | chr2_1:33082130-33082149 | Msa0205820:CDS | 35.0% | |
| !!! | GTCGCTTACGAAATGTTTTT+TGG | - | chr2_1:33082296-33082315 | Msa0205820:CDS | 35.0% |
| ! | AGGGCTGCATATGAATATTT+TGG | - | chr2_1:33082334-33082353 | Msa0205820:intron | 35.0% |
| ATGGTTTACTCCAACAAATG+GGG | + | chr2_1:33082416-33082435 | None:intergenic | 35.0% | |
| GATGGTTTACTCCAACAAAT+GGG | + | chr2_1:33082417-33082436 | None:intergenic | 35.0% | |
| TGATGGTTTACTCCAACAAA+TGG | + | chr2_1:33082418-33082437 | None:intergenic | 35.0% | |
| TTTGTTGGAGTAAACCATCA+TGG | - | chr2_1:33082418-33082437 | Msa0205820:intron | 35.0% | |
| AGGATACTAAGTCCTTTACT+TGG | - | chr2_1:33082479-33082498 | Msa0205820:intron | 35.0% | |
| ATCCATGCAAAATGCAATTG+CGG | - | chr2_1:33082570-33082589 | Msa0205820:CDS | 35.0% | |
| !! | GAGTATCTACTTAGCTTTTC+TGG | + | chr2_1:33082652-33082671 | None:intergenic | 35.0% |
| AGAGTGATTTCATGGAAAAG+TGG | - | chr2_1:33082728-33082747 | Msa0205820:CDS | 35.0% | |
| GAGTGATTTCATGGAAAAGT+GGG | - | chr2_1:33082729-33082748 | Msa0205820:CDS | 35.0% | |
| ! | ATATGTGAGAGACACGTTTT+GGG | - | chr2_1:33082834-33082853 | Msa0205820:CDS | 35.0% |
| !! | AAGGAAAACAAGGCTGATTT+TGG | - | chr2_1:33082982-33083001 | Msa0205820:CDS | 35.0% |
| !! | TCATACTTGCTTTGAGAGAT+TGG | - | chr2_1:33083125-33083144 | Msa0205820:intron | 35.0% |
| CTCAAAGTCTTTCTCATTGA+AGG | + | chr2_1:33083229-33083248 | None:intergenic | 35.0% | |
| CCACTGAGAGAAAATATAAG+AGG | + | chr2_1:33083349-33083368 | None:intergenic | 35.0% | |
| ! | CCTCTTATATTTTCTCTCAG+TGG | - | chr2_1:33083346-33083365 | Msa0205820:intron | 35.0% |
| ! | CTTATATTTTCTCTCAGTGG+AGG | - | chr2_1:33083349-33083368 | Msa0205820:intron | 35.0% |
| ! | CTTTTATGAAGTTGCTTCTG+AGG | - | chr2_1:33083468-33083487 | Msa0205820:intron | 35.0% |
| !!! | CACTCTGTTGACTTCTTTTT+TGG | + | chr2_1:33083723-33083742 | None:intergenic | 35.0% |
| CAAAAAAGAAGTCAACAGAG+TGG | - | chr2_1:33083721-33083740 | Msa0205820:CDS | 35.0% | |
| ! | GTTCAAGTAGTTGATGTAGT+TGG | - | chr2_1:33083858-33083877 | Msa0205820:CDS | 35.0% |
| !! | TAGGGGGAACATATTAGTTT+TGG | - | chr2_1:33083998-33084017 | Msa0205820:CDS | 35.0% |
| !!! | AGGGGGAACATATTAGTTTT+GGG | - | chr2_1:33083999-33084018 | Msa0205820:CDS | 35.0% |
| !!! | CATATTAGTTTTGGGAGGAA+TGG | - | chr2_1:33084007-33084026 | Msa0205820:CDS | 35.0% |
| !! | TTGATCAGTTGATGAGGGAT+GGG | + | chr2_1:33081417-33081436 | None:intergenic | 40.0% |
| !! | TTTGATCAGTTGATGAGGGA+TGG | + | chr2_1:33081418-33081437 | None:intergenic | 40.0% |
| GATGAAGAGGATATCAGAGA+AGG | - | chr2_1:33081626-33081645 | Msa0205820:intron | 40.0% | |
| GAAGATGAAAAACCTCAGGT+TGG | - | chr2_1:33081692-33081711 | Msa0205820:CDS | 40.0% | |
| CAAGAGTTATGCCCAATCTA+TGG | - | chr2_1:33081754-33081773 | Msa0205820:intron | 40.0% | |
| ! | TATGCCCAATCTATGGGTTT+TGG | - | chr2_1:33081761-33081780 | Msa0205820:intron | 40.0% |
| TTTACTCTAGCATGTAGTCG+TGG | - | chr2_1:33081830-33081849 | Msa0205820:intron | 40.0% | |
| !! | ATTCAATCTAGCCTTGCACT+TGG | + | chr2_1:33081912-33081931 | None:intergenic | 40.0% |
| CTAAAATAGCGTGCTTTGTC+AGG | + | chr2_1:33082004-33082023 | None:intergenic | 40.0% | |
| ! | TCTAACCTCCTTTTCAAACG+AGG | + | chr2_1:33082046-33082065 | None:intergenic | 40.0% |
| ! | AACCGCAATTGCATTTTGCA+TGG | + | chr2_1:33082575-33082594 | None:intergenic | 40.0% |
| ! | ACCATCAATGACGAGCTTTT+GGG | + | chr2_1:33082603-33082622 | None:intergenic | 40.0% |
| ! | CATATGTGAGAGACACGTTT+TGG | - | chr2_1:33082833-33082852 | Msa0205820:CDS | 40.0% |
| ! | TTGCATTGGTGAATGCTTTC+TGG | + | chr2_1:33083062-33083081 | None:intergenic | 40.0% |
| !! | ACTTGCTTTGAGAGATTGGA+AGG | - | chr2_1:33083129-33083148 | Msa0205820:intron | 40.0% |
| ! | TATTTTCTCTCAGTGGAGGA+AGG | - | chr2_1:33083353-33083372 | Msa0205820:intron | 40.0% |
| AACCTTCTTCCACAATGACA+GGG | + | chr2_1:33083576-33083595 | None:intergenic | 40.0% | |
| TGTCATTGTGGAAGAAGGTT+CGG | - | chr2_1:33083576-33083595 | Msa0205820:CDS | 40.0% | |
| CTTTACTTCGAGTCGGTATA+GGG | + | chr2_1:33083630-33083649 | None:intergenic | 40.0% | |
| !! | GAAGACTTCCTTTTTGAAGG+AGG | + | chr2_1:33083658-33083677 | None:intergenic | 40.0% |
| ACAGAGTGGAAATCAACAAG+AGG | - | chr2_1:33083735-33083754 | Msa0205820:CDS | 40.0% | |
| !!! | GGGAACATATTAGTTTTGGG+AGG | - | chr2_1:33084002-33084021 | Msa0205820:CDS | 40.0% |
| !! | CGTGTTATTGATGACGACAA+CGG | + | chr2_1:33084349-33084368 | None:intergenic | 40.0% |
| TGGATCCTCGTTTGAAAAGG+AGG | - | chr2_1:33082038-33082057 | Msa0205820:CDS | 45.0% | |
| AAAGTGAGGAGACTACGACT+TGG | - | chr2_1:33082181-33082200 | Msa0205820:CDS | 45.0% | |
| AAGTGAGGAGACTACGACTT+GGG | - | chr2_1:33082182-33082201 | Msa0205820:CDS | 45.0% | |
| ! | ATGCCTTTTGCCCCATTTGT+TGG | - | chr2_1:33082403-33082422 | Msa0205820:intron | 45.0% |
| ACTCCAACAAATGGGGCAAA+AGG | + | chr2_1:33082409-33082428 | None:intergenic | 45.0% | |
| ! | ACAACACAGATTGGCCATGA+TGG | + | chr2_1:33082435-33082454 | None:intergenic | 45.0% |
| TCATGGCCAATCTGTGTTGT+TGG | - | chr2_1:33082435-33082454 | Msa0205820:intron | 45.0% | |
| ! | CATGGCCAATCTGTGTTGTT+GGG | - | chr2_1:33082436-33082455 | Msa0205820:intron | 45.0% |
| ! | CTGTGCTTTATTGTCGAAGG+AGG | - | chr2_1:33082459-33082478 | Msa0205820:intron | 45.0% |
| GCATGCACTCTAACCATGTT+TGG | + | chr2_1:33082510-33082529 | None:intergenic | 45.0% | |
| ACATGGTTAGAGTGCATGCA+TGG | - | chr2_1:33082511-33082530 | Msa0205820:intron | 45.0% | |
| TCCCAAAAGCTCGTCATTGA+TGG | - | chr2_1:33082599-33082618 | Msa0205820:CDS | 45.0% | |
| ! | CACCATCAATGACGAGCTTT+TGG | + | chr2_1:33082604-33082623 | None:intergenic | 45.0% |
| !! | CTCGTCATTGATGGTGTTTG+TGG | - | chr2_1:33082608-33082627 | Msa0205820:CDS | 45.0% |
| AACGTGTCTCTCACATATGC+AGG | + | chr2_1:33082832-33082851 | None:intergenic | 45.0% | |
| ACCTTCTTCCACAATGACAG+GGG | + | chr2_1:33083575-33083594 | None:intergenic | 45.0% | |
| GAACCTTCTTCCACAATGAC+AGG | + | chr2_1:33083577-33083596 | None:intergenic | 45.0% | |
| CCTTTACTTCGAGTCGGTAT+AGG | + | chr2_1:33083631-33083650 | None:intergenic | 45.0% | |
| !! | CCTATACCGACTCGAAGTAA+AGG | - | chr2_1:33083628-33083647 | Msa0205820:CDS | 45.0% |
| AAGGTCGTCCTCCTTCAAAA+AGG | - | chr2_1:33083647-33083666 | Msa0205820:CDS | 45.0% | |
| CTTGTACTTTAGACGCACAC+AGG | + | chr2_1:33083833-33083852 | None:intergenic | 45.0% | |
| !!! | AGTTTTGGGAGGAATGGACA+TGG | - | chr2_1:33084013-33084032 | Msa0205820:CDS | 45.0% |
| ACGACAACGGATCATTCACA+TGG | + | chr2_1:33084336-33084355 | None:intergenic | 45.0% | |
| AGTGAGGAGACTACGACTTG+GGG | - | chr2_1:33082183-33082202 | Msa0205820:CDS | 50.0% | |
| TTTGGGCAGATGCGAGATGT+AGG | - | chr2_1:33082314-33082333 | Msa0205820:intron | 50.0% | |
| TTGGGCAGATGCGAGATGTA+GGG | - | chr2_1:33082315-33082334 | Msa0205820:intron | 50.0% | |
| CACAGCCCAACAACACAGAT+TGG | + | chr2_1:33082444-33082463 | None:intergenic | 50.0% | |
| ! | GGGCTGTGCTTTATTGTCGA+AGG | - | chr2_1:33082456-33082475 | Msa0205820:intron | 50.0% |
| !! | TGTGAGAGACACGTTTTGGG+CGG | - | chr2_1:33082837-33082856 | Msa0205820:CDS | 50.0% |
| GACAGGGGATGCTTCTTTAG+AGG | + | chr2_1:33083560-33083579 | None:intergenic | 50.0% | |
| !! | AGAAGCATCCCCTGTCATTG+TGG | - | chr2_1:33083564-33083583 | Msa0205820:CDS | 50.0% |
| TCCCCTGTCATTGTGGAAGA+AGG | - | chr2_1:33083571-33083590 | Msa0205820:CDS | 50.0% | |
| GGACGACCTTTACTTCGAGT+CGG | + | chr2_1:33083637-33083656 | None:intergenic | 50.0% | |
| TTTGGGAGGAATGGACATGG+TGG | - | chr2_1:33084016-33084035 | Msa0205820:CDS | 50.0% | |
| !! | GTGAGAGACACGTTTTGGGC+GGG | - | chr2_1:33082838-33082857 | Msa0205820:CDS | 55.0% |
| ! | AGGAGACTACGACTTGGGGC+TGG | - | chr2_1:33082187-33082206 | Msa0205820:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 33081362 | 33084381 | 33081362 | ID=Msa0205820;Name=Msa0205820 |
| chr2_1 | mRNA | 33081362 | 33084381 | 33081362 | ID=Msa0205820-mRNA-1;Parent=Msa0205820;Name=Msa0205820-mRNA-1;_AED=0.41;_eAED=0.41;_QI=0|0.42|0.12|1|1|1|8|0|599 |
| chr2_1 | exon | 33084360 | 33084381 | 33084360 | ID=Msa0205820-mRNA-1:exon:11472;Parent=Msa0205820-mRNA-1 |
| chr2_1 | exon | 33083470 | 33084140 | 33083470 | ID=Msa0205820-mRNA-1:exon:11471;Parent=Msa0205820-mRNA-1 |
| chr2_1 | exon | 33082522 | 33083013 | 33082522 | ID=Msa0205820-mRNA-1:exon:11470;Parent=Msa0205820-mRNA-1 |
| chr2_1 | exon | 33081987 | 33082319 | 33081987 | ID=Msa0205820-mRNA-1:exon:11469;Parent=Msa0205820-mRNA-1 |
| chr2_1 | exon | 33081844 | 33081915 | 33081844 | ID=Msa0205820-mRNA-1:exon:11468;Parent=Msa0205820-mRNA-1 |
| chr2_1 | exon | 33081647 | 33081742 | 33081647 | ID=Msa0205820-mRNA-1:exon:11467;Parent=Msa0205820-mRNA-1 |
| chr2_1 | exon | 33081508 | 33081564 | 33081508 | ID=Msa0205820-mRNA-1:exon:11466;Parent=Msa0205820-mRNA-1 |
| chr2_1 | exon | 33081362 | 33081418 | 33081362 | ID=Msa0205820-mRNA-1:exon:11465;Parent=Msa0205820-mRNA-1 |
| chr2_1 | CDS | 33084360 | 33084381 | 33084360 | ID=Msa0205820-mRNA-1:cds;Parent=Msa0205820-mRNA-1 |
| chr2_1 | CDS | 33083470 | 33084140 | 33083470 | ID=Msa0205820-mRNA-1:cds;Parent=Msa0205820-mRNA-1 |
| chr2_1 | CDS | 33082522 | 33083013 | 33082522 | ID=Msa0205820-mRNA-1:cds;Parent=Msa0205820-mRNA-1 |
| chr2_1 | CDS | 33081987 | 33082319 | 33081987 | ID=Msa0205820-mRNA-1:cds;Parent=Msa0205820-mRNA-1 |
| chr2_1 | CDS | 33081844 | 33081915 | 33081844 | ID=Msa0205820-mRNA-1:cds;Parent=Msa0205820-mRNA-1 |
| chr2_1 | CDS | 33081647 | 33081742 | 33081647 | ID=Msa0205820-mRNA-1:cds;Parent=Msa0205820-mRNA-1 |
| chr2_1 | CDS | 33081508 | 33081564 | 33081508 | ID=Msa0205820-mRNA-1:cds;Parent=Msa0205820-mRNA-1 |
| chr2_1 | CDS | 33081362 | 33081418 | 33081362 | ID=Msa0205820-mRNA-1:cds;Parent=Msa0205820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
